Uploading to Git - downloaded from Chi and cleaned up in PyCharm

Author: 000generic

Blastp-COG/backup-scripts/000-mv-files Blastp-COG/000-mv-files

@@ -1,7 +1,7 @@
 #! python
 
 input_reports = open( 'trash', 'r' )
-output_command = open( '000-python-mv-files', 'w' )
+output_command = open('000-python-mv-files', 'w')
 # 3-blast-report-Hominidae-Homo_x_Rhabditidae-Caenorhabditis
 for next_report in input_reports:
 

Blastp-COG/backup-scripts/000-python-mv-files Blastp-COG/000-python-mv-files

@@ -3,7 +3,7 @@
 # blastp -db /scratch/eedsinger/database/ncbi/nr/nr -query ../species19/projectdb/Metazoa-Mollusca-Gastropoda-Aplysiida-Aplysiidae-Aplysia-californica-6500-T1.aa -out output/3-blast-report-Aplysia-californica_X_ncbi_nr -num_threads 70 -outfmt "6 qseqid sseqid evalue staxids sscinames scomnames" -evalue 1e-05 -max_hsps 1 -max_target_seqs 5 -negative_taxids 6500
 
 input_blastdbs = open( 'output/1-list-fastas-blastdbs', 'r' )
-output_command = open( '003-blastp-species19-all_x_all', 'w' )
+output_command = open('003-blastp-species19-all_x_all', 'w')
 
 gspp_blastdbs = {}
 for next_blastdb in input_blastdbs: