fixed toml creation issue where files_to_track was not treated as vector for single extension provided.

Author: mduncans

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: slurmtools
 Title: slurm tooling 
-Version: 0.1.1
+Version: 0.1.2
 Authors@R: c(person("Devin", "Pastoor", , "[email protected]", role = c("aut", "cre")),
     person("Jenna", "Elwing", email = "[email protected]", role = "aut"),
     person("Matthew", "Smith", email = "[email protected]", role = "aut"))

R/nmm-config.R

@@ -57,6 +57,10 @@ generate_nmm_config <- function(
     }
   }
 
+  if (length(files_to_track) == 1) {
+    files_to_track <- array(files_to_track, 1)
+  }
+
   toml <- list(
     model_number = model_number,
     files_to_track = files_to_track,

vignettes/slack-alerts.Rmd

@@ -86,6 +86,7 @@ slurmtools::generate_nmm_config(
   watched_dir = "/cluster-data/user-homes/matthews/Packages/slurmtools/vignettes/model/nonmem",
   output_dir = "/cluster-data/user-homes/matthews/Packages/slurmtools/vignettes/model/nonmem/in_progress",
   overwrite = TRUE,
+  files_to_track = c("ext"),
   bbi_config_path = "/cluster-data/user-homes/matthews/Packages/slurmtools/vignettes/model/nonmem/bbi.yaml",
   alerter_opts = list(
     alerter = normalizePath('~/.local/bin/snt'), #binary location of nmm,
@@ -128,7 +129,6 @@ submission_nmm <- slurmtools::submit_slurm_job(
   overwrite = TRUE,
   slurm_job_template_path = file.path(nonmem, "slurm-job-nmm.tmpl"),
   slurm_template_opts = list(
-    nmm_exe_path = normalizePath("~/.local/bin/nmm")
   )
 )