diff --git a/envs/dev/requirements.txt b/envs/dev/requirements.txt index c8fd1e4..7548af3 100644 --- a/envs/dev/requirements.txt +++ b/envs/dev/requirements.txt @@ -6,147 +6,338 @@ # --index-url https://pypi.python.org/simple/ -alabaster==0.7.12 # via sphinx -apipkg==1.5 # via execnet -attrs==19.3.0 # via jsonschema, pytest -babel==2.8.0 # via nikola, sphinx -backcall==0.1.0 # via ipython -bcrypt==3.1.7 # via paramiko -bleach==3.1.5 # via nbconvert, readme-renderer -blinker==1.4 # via nikola -certifi==2020.4.5.1 # via requests -cffi==1.14.0 # via bcrypt, cryptography, pynacl -chardet==3.0.4 # via requests -click==7.1.2 # via jubeo, pip-tools -cloudpickle==1.4.1 # via doit -contextlib2==0.6.0.post1 # via pytest-shutil -coverage==5.1 # via -r .jubeo/requirements.in (line 6), -r envs/dev/requirements.in (line 25), pytest-cov -cryptography==2.9.2 # via paramiko, secretstorage -decorator==4.4.2 # via ipython, traitlets -defusedxml==0.6.0 # via nbconvert -docutils==0.16 # via nbsphinx, nikola, readme-renderer, sphinx -doit==0.32.0 # via nikola -entrypoints==0.3 # via flake8, nbconvert -execnet==1.7.1 # via pytest-shutil -fabric==2.5.0 # via -r envs/dev/requirements.in (line 19) -fancycompleter==0.9.1 # via pdbpp -flake8==3.7.9 # via -r envs/dev/requirements.in (line 24) -ghp-import==0.5.5 # via -r .jubeo/requirements.in (line 5), -r envs/dev/requirements.in (line 35) -gitdb==4.0.4 # via gitpython -gitpython==3.1.1 # via jubeo -gprof2dot==2019.11.30 # via pytest-profiling -hyperlink==19.0.0 # via jubeo -idna==2.9 # via hyperlink, requests -imagesize==1.2.0 # via sphinx -importlib-metadata==1.6.0 # via jsonschema, keyring, path, pluggy, pytest, twine -invoke==1.4.1 # via -r .jubeo/requirements.in (line 2), -r envs/dev/requirements.in (line 18), fabric -ipykernel==5.2.1 # via notebook -ipython-genutils==0.2.0 # via nbformat, notebook, traitlets -ipython==7.13.0 # via -r envs/dev/requirements.in (line 13), ipykernel -jedi==0.17.0 # via ipython -jeepney==0.4.3 # via keyring, secretstorage -jinja2==2.11.2 # via nbconvert, nbsphinx, notebook, sphinx -jsonschema==3.2.0 # via nbformat -jubeo==0.0.3a0.dev0 # via -r .jubeo/requirements.in (line 1), -r envs/dev/requirements.in (line 20) -jupyter-client==6.1.3 # via ipykernel, notebook -jupyter-core==4.6.3 # via jupyter-client, nbconvert, nbformat, notebook -keyring==21.2.0 # via twine -lizard==1.17.3 # via -r envs/dev/requirements.in (line 23) -lxml==4.5.0 # via nikola -mako==1.1.2 # via nikola -markdown==3.2.1 # via nikola -markupsafe==1.1.1 # via jinja2, mako -mccabe==0.6.1 # via flake8 -mdtraj==1.9.3 # via -r ./requirements.in (line 9) -mistune==0.8.4 # via nbconvert -mock==4.0.2 # via pytest-shutil -more-itertools==8.2.0 # via pytest -natsort==7.0.1 # via nikola -nbconvert==5.6.1 # via nbsphinx, notebook -nbformat==5.0.6 # via nbconvert, nbsphinx, notebook -nbsphinx==0.6.1 # via -r envs/dev/requirements.in (line 30) -nikola[all]==8.0.4 # via -r envs/dev/requirements.in (line 34) -notebook==6.0.3 # via -r envs/dev/requirements.in (line 31) -numpy==1.18.3 # via -r ./requirements.in (line 3), mdtraj, pandas, scipy -packaging==20.3 # via bleach, pytest, sphinx -pandas==1.0.3 # via -r ./requirements.in (line 5) -pandocfilters==1.4.2 # via nbconvert -paramiko==2.7.1 # via fabric -parso==0.7.0 # via jedi -path.py==12.4.0 # via pytest-shutil -path==13.1.0 # via path.py -pdbpp==0.10.2 # via -r envs/dev/requirements.in (line 14) -pexpect==4.8.0 # via ipython -pickleshare==0.7.5 # via ipython -piexif==1.1.3 # via nikola -pillow==7.1.2 # via nikola -pip-tools==5.1.0 # via -r .jubeo/requirements.in (line 3), -r envs/dev/requirements.in (line 10) -pkginfo==1.5.0.1 # via twine -pluggy==0.13.1 # via pytest -pockets==0.9.1 # via sphinxcontrib-napoleon -prometheus-client==0.7.1 # via notebook -prompt-toolkit==3.0.5 # via ipython -ptyprocess==0.6.0 # via pexpect, terminado -py-cpuinfo==5.0.0 # via pytest-benchmark -py==1.8.1 # via pytest -pycodestyle==2.5.0 # via flake8 -pycparser==2.20 # via cffi -pyflakes==2.1.1 # via flake8 -pygments==2.6.1 # via ipython, nbconvert, nikola, pdbpp, readme-renderer, sphinx -pyinotify==0.9.6 # via doit -pynacl==1.3.0 # via paramiko -pyparsing==2.4.7 # via packaging -pyrepl==0.9.0 # via fancycompleter -pyrsistent==0.16.0 # via jsonschema -pyrss2gen==1.1 # via nikola -pytest-benchmark==3.2.3 # via -r ./envs/test/requirements.in (line 22) -pytest-cov==2.8.1 # via -r ./envs/test/requirements.in (line 21) -git+https://github.com/salotz/pytest-datadir.git # via -r ./envs/test/requirements.in (line 14) -pytest-html==2.1.1 # via -r ./envs/test/requirements.in (line 17) -pytest-metadata==1.8.0 # via pytest-html -pytest-mock==3.1.0 # via -r ./envs/test/requirements.in (line 20) -pytest-print==0.1.3 # via -r ./envs/test/requirements.in (line 16), -r ./envs/test/requirements.in (line 19) -pytest-profiling==1.7.0 # via -r ./envs/test/requirements.in (line 23) -pytest-runner==5.2 # via -r ./envs/test/requirements.in (line 11), -r .jubeo/requirements.in (line 8) -pytest-shutil==1.7.0 # via -r ./envs/test/requirements.in (line 18) -pytest==5.4.1 # via -r ./envs/test/requirements.in (line 10), -r .jubeo/requirements.in (line 7), pytest-benchmark, pytest-cov, pytest-datadir, pytest-html, pytest-metadata, pytest-mock, pytest-print, pytest-profiling, pytest-shutil -python-dateutil==2.8.1 # via jupyter-client, nikola, pandas -pytz==2020.1 # via babel, pandas -pyzmq==19.0.0 # via jupyter-client, notebook -readme-renderer==26.0 # via twine -requests-toolbelt==0.9.1 # via twine -requests==2.23.0 # via nikola, requests-toolbelt, sphinx, twine -scipy==1.4.1 # via -r ./requirements.in (line 4), mdtraj -secretstorage==3.1.2 # via keyring -send2trash==1.5.0 # via notebook -six==1.14.0 # via bcrypt, bleach, cryptography, jsonschema, packaging, pip-tools, pockets, pynacl, pyrsistent, pytest-print, pytest-profiling, pytest-shutil, python-dateutil, readme-renderer, sphinxcontrib-napoleon, traitlets -smmap==3.0.2 # via gitdb -snowballstemmer==2.0.0 # via sphinx -sphinx==3.0.3 # via -r envs/dev/requirements.in (line 28), nbsphinx -sphinxcontrib-applehelp==1.0.2 # via sphinx -sphinxcontrib-devhelp==1.0.2 # via sphinx -sphinxcontrib-htmlhelp==1.0.3 # via sphinx -sphinxcontrib-jsmath==1.0.1 # via sphinx -sphinxcontrib-napoleon==0.7 # via -r envs/dev/requirements.in (line 29) -sphinxcontrib-qthelp==1.0.3 # via sphinx -sphinxcontrib-serializinghtml==1.1.4 # via sphinx -termcolor==1.1.0 # via pytest-shutil -terminado==0.8.3 # via notebook -testpath==0.4.4 # via nbconvert -toml==0.10.0 # via jubeo -tornado==6.0.4 # via ipykernel, jupyter-client, notebook, terminado -tqdm==4.45.0 # via twine -traitlets==4.3.3 # via ipykernel, ipython, jupyter-client, jupyter-core, nbconvert, nbformat, nbsphinx, notebook -twine==3.1.1 # via -r envs/dev/requirements.in (line 9) -unidecode==1.1.1 # via nikola -urllib3==1.25.9 # via requests -versioneer==0.18 # via -r .jubeo/requirements.in (line 4) -wcwidth==0.1.9 # via prompt-toolkit, pytest -webencodings==0.5.1 # via bleach -wheel==0.34.2 # via -r envs/dev/requirements.in (line 8) -wmctrl==0.3 # via pdbpp -yapsy==1.12.2 # via nikola -zipp==3.1.0 # via importlib-metadata +alabaster==0.7.12 + # via sphinx +attrs==19.3.0 + # via jsonschema +babel==2.8.0 + # via + # nikola + # sphinx +backcall==0.1.0 + # via ipython +bcrypt==3.1.7 + # via paramiko +beautifulsoup4==4.11.1 + # via nbconvert +bleach==3.1.5 + # via + # nbconvert + # readme-renderer +blinker==1.4 + # via nikola +certifi==2020.4.5.1 + # via requests +cffi==1.14.0 + # via + # bcrypt + # cryptography + # pynacl +chardet==3.0.4 + # via requests +click==7.1.2 + # via + # jubeo + # pip-tools +cloudpickle==1.4.1 + # via doit +coverage==5.1 + # via -r requirements.in +cryptography==2.9.2 + # via + # paramiko + # secretstorage +decorator==4.4.2 + # via ipython +defusedxml==0.6.0 + # via nbconvert +docutils==0.16 + # via + # nbsphinx + # nikola + # readme-renderer + # sphinx +doit==0.32.0 + # via nikola +entrypoints==0.3 + # via + # flake8 + # jupyter-client + # nbconvert +fabric==2.5.0 + # via -r requirements.in +fancycompleter==0.9.1 + # via pdbpp +fastjsonschema==2.16.1 + # via nbformat +flake8==3.7.9 + # via -r requirements.in +ghp-import==0.5.5 + # via -r requirements.in +gitdb==4.0.4 + # via gitpython +gitpython==3.1.1 + # via jubeo +hyperlink==19.0.0 + # via jubeo +idna==2.9 + # via + # hyperlink + # requests +imagesize==1.2.0 + # via sphinx +invoke==1.4.1 + # via + # -r requirements.in + # fabric +ipykernel==5.2.1 + # via notebook +ipython==7.13.0 + # via + # -r requirements.in + # ipykernel +ipython-genutils==0.2.0 + # via notebook +jedi==0.17.0 + # via ipython +jeepney==0.4.3 + # via + # keyring + # secretstorage +jinja2==3.1.2 + # via + # nbconvert + # nbsphinx + # notebook + # sphinx +jsonschema==3.2.0 + # via nbformat +jubeo==0.0.3a0.dev0 + # via -r requirements.in +jupyter-client==7.3.4 + # via + # ipykernel + # nbclient + # notebook +jupyter-core==4.11.1 + # via + # jupyter-client + # nbconvert + # nbformat + # notebook +jupyterlab-pygments==0.2.2 + # via nbconvert +keyring==21.2.0 + # via twine +lizard==1.17.3 + # via -r requirements.in +lxml==4.5.0 + # via + # nbconvert + # nikola +mako==1.1.2 + # via nikola +markdown==3.2.1 + # via nikola +markupsafe==2.1.1 + # via + # jinja2 + # mako + # nbconvert +mccabe==0.6.1 + # via flake8 +mistune==0.8.4 + # via nbconvert +natsort==7.0.1 + # via nikola +nbclient==0.6.7 + # via nbconvert +nbconvert==6.5.1 + # via + # nbsphinx + # notebook +nbformat==5.4.0 + # via + # nbclient + # nbconvert + # nbsphinx + # notebook +nbsphinx==0.6.1 + # via -r requirements.in +nest-asyncio==1.5.5 + # via + # jupyter-client + # nbclient +nikola[all]==8.0.4 + # via -r requirements.in +notebook==6.0.3 + # via -r requirements.in +packaging==20.3 + # via + # bleach + # nbconvert + # sphinx +pandocfilters==1.4.2 + # via nbconvert +paramiko==2.7.1 + # via fabric +parso==0.7.0 + # via jedi +pdbpp==0.10.2 + # via -r requirements.in +pexpect==4.8.0 + # via ipython +pickleshare==0.7.5 + # via ipython +piexif==1.1.3 + # via nikola +pillow==7.1.2 + # via nikola +pip-tools==5.1.0 + # via -r requirements.in +pkginfo==1.5.0.1 + # via twine +pockets==0.9.1 + # via sphinxcontrib-napoleon +prometheus-client==0.7.1 + # via notebook +prompt-toolkit==3.0.5 + # via ipython +ptyprocess==0.6.0 + # via + # pexpect + # terminado +pycodestyle==2.5.0 + # via flake8 +pycparser==2.20 + # via cffi +pyflakes==2.1.1 + # via flake8 +pygments==2.6.1 + # via + # ipython + # nbconvert + # nikola + # pdbpp + # readme-renderer + # sphinx +pyinotify==0.9.6 + # via doit +pynacl==1.3.0 + # via paramiko +pyparsing==2.4.7 + # via packaging +pyrepl==0.9.0 + # via fancycompleter +pyrsistent==0.16.0 + # via jsonschema +pyrss2gen==1.1 + # via nikola +python-dateutil==2.8.2 + # via + # jupyter-client + # nikola +pytz==2020.1 + # via babel +pyzmq==23.2.1 + # via + # jupyter-client + # notebook +readme-renderer==26.0 + # via twine +requests==2.23.0 + # via + # nikola + # requests-toolbelt + # sphinx + # twine +requests-toolbelt==0.9.1 + # via twine +secretstorage==3.1.2 + # via keyring +send2trash==1.5.0 + # via notebook +six==1.14.0 + # via + # bcrypt + # bleach + # cryptography + # jsonschema + # packaging + # pip-tools + # pockets + # pynacl + # pyrsistent + # python-dateutil + # readme-renderer + # sphinxcontrib-napoleon +smmap==3.0.2 + # via gitdb +snowballstemmer==2.0.0 + # via sphinx +soupsieve==2.3.2.post1 + # via beautifulsoup4 +sphinx==3.0.3 + # via + # -r requirements.in + # nbsphinx +sphinxcontrib-applehelp==1.0.2 + # via sphinx +sphinxcontrib-devhelp==1.0.2 + # via sphinx +sphinxcontrib-htmlhelp==1.0.3 + # via sphinx +sphinxcontrib-jsmath==1.0.1 + # via sphinx +sphinxcontrib-napoleon==0.7 + # via -r requirements.in +sphinxcontrib-qthelp==1.0.3 + # via sphinx +sphinxcontrib-serializinghtml==1.1.4 + # via sphinx +terminado==0.8.3 + # via notebook +tinycss2==1.1.1 + # via nbconvert +toml==0.10.0 + # via jubeo +tornado==6.0.4 + # via + # ipykernel + # jupyter-client + # notebook + # terminado +tqdm==4.45.0 + # via twine +traitlets==5.3.0 + # via + # ipykernel + # ipython + # jupyter-client + # jupyter-core + # nbclient + # nbconvert + # nbformat + # nbsphinx + # notebook +twine==3.1.1 + # via -r requirements.in +unidecode==1.1.1 + # via nikola +urllib3==1.25.9 + # via requests +wcwidth==0.1.9 + # via prompt-toolkit +webencodings==0.5.1 + # via + # bleach + # tinycss2 +wheel==0.34.2 + # via -r requirements.in +wmctrl==0.3 + # via pdbpp +yapsy==1.12.2 + # via nikola # The following packages are considered to be unsafe in a requirements file: # pip