pyproject.toml

[build-system]
requires = ["setuptools>=42", "wheel", "setuptools_scm[toml]>=3.4"]
build-backend = "setuptools.build_meta"

[tool.setuptools_scm]
write_to = "amypet/_dist_ver.py"
write_to_template = "__version__ = '{version}'\n"

[tool.setuptools.packages.find]
exclude = ["tests"]

[project.urls]
documentation = "https://github.com/AMYPAD/AmyPET/#AmyPET"
repository = "https://github.com/AMYPAD/AmyPET"
changelog = "https://github.com/AMYPAD/AmyPET/releases"

[project]
name = "amypet"
dynamic = ["version"]
maintainers = [{name = "Casper da Costa-Luis", email = "casper.dcl@physics.org"}]
description = "Amyloid imaging to prevent Alzheimer's Disease"
readme = "README.rst"
requires-python = ">=3.7"
keywords = ["PET", "Alzheimers", "Neuroimaging", "Endocrinology"]
license = {text = "MPL-2.0"}
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Developers",
    "Intended Audience :: Education",
    "Intended Audience :: Healthcare Industry",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0)",
    "Operating System :: Microsoft :: Windows",
    "Operating System :: POSIX :: Linux",
    "Programming Language :: Other Scripting Engines",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.7",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3 :: Only",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
    "Topic :: Software Development :: Libraries",
    "Topic :: Software Development :: Libraries :: Python Modules",
    "Topic :: Software Development :: User Interfaces",
    "Topic :: System :: Installation/Setup",
    "Topic :: Utilities"]
dependencies = [
    'importlib_resources; python_version < "3.9"',
    "argopt",
    "miutil[cuda,nii]>=0.9.0",
    "mpld3",
    "niftypad>=2.0.0",
    "nimpa[dcm2niix]>=2.6.0",
    "setuptools",
    "shtab>1.3.2",
    "spm12>=2.1.0",
    "streamlit>=0.85.2",
    "toml",
    "tqdm"]

[project.optional-dependencies]
dev = ["pytest>=6", "pytest-cov", "pytest-timeout", "pytest-xdist"]
gui = ["Gooey>=1.0.8"]
web = []
niftypet = ["niftypet>=0.0.1"]

[project.scripts]
amypet = "amypet.web:main"
amypet-cli = "amypet.cli:main"
amypet-gui = "amypet.gui:main"
amypet-web = "amypet.web:main"

[tool.flake8]
max_line_length = 99
extend_ignore = ["E261", "P1"]
exclude = [".git", "__pycache__", "build", "dist", ".eggs"]

[tool.yapf]
spaces_before_comment = [15, 20]
arithmetic_precedence_indication = true
allow_split_before_dict_value = false
coalesce_brackets = true
column_limit = 99
each_dict_entry_on_separate_line = false
space_between_ending_comma_and_closing_bracket = false
split_before_named_assigns = false
split_before_closing_bracket = false
blank_line_before_nested_class_or_def = false

[tool.isort]
profile = "black"
line_length = 99
known_first_party = ["amypet", "tests"]

[tool.pytest.ini_options]
minversion = "6.0"
timeout = 10
log_level = "INFO"
python_files = ["tests/test_*.py"]
testpaths = ["tests"]
addopts = "-v --tb=short -rxs -W=error -n=auto --durations=0 --durations-min=1 --cov=amypet --cov-report=term-missing --cov-report=xml"
filterwarnings = ["ignore:numpy.ufunc size changed.*:RuntimeWarning"]