-
Notifications
You must be signed in to change notification settings - Fork 3
Expand file tree
/
Copy path_shared.py
More file actions
356 lines (287 loc) · 11.6 KB
/
_shared.py
File metadata and controls
356 lines (287 loc) · 11.6 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
"""
Shared utilities for advanced visualization sub-modules.
Contains dataclasses, validation, and helper functions used by both
processor.py, network_viz.py, and statistical_viz.py. Exists to
avoid circular imports between processor and sub-modules.
"""
import json
import logging
from dataclasses import dataclass, field
from pathlib import Path
from typing import Any, Dict, List, Optional, cast
try:
import numpy as np
NUMPY_AVAILABLE = True
except ImportError:
np = cast(Any, None)
NUMPY_AVAILABLE = False
try:
import matplotlib
matplotlib.use("Agg")
import matplotlib.pyplot as plt
MATPLOTLIB_AVAILABLE = True
except ImportError:
MATPLOTLIB_AVAILABLE = False
plt = cast(Any, None)
try:
import seaborn as sns
SEABORN_AVAILABLE = True
except ImportError:
sns = cast(Any, None)
SEABORN_AVAILABLE = False
class _LazyMatrixVisualizer:
"""Defer MatrixVisualizer import until advanced visualization actually needs it."""
def __call__(self) -> Any:
from visualization.matrix_visualizer import MatrixVisualizer
return MatrixVisualizer()
_MatrixVisualizer = _LazyMatrixVisualizer()
@dataclass
class AdvancedVisualizationAttempt:
"""Track individual visualization attempts"""
viz_type: str
model_name: str
status: str # "success", "failed", "skipped"
duration_ms: float = 0.0
output_files: List[str] = field(default_factory=list)
error_message: Optional[str] = None
fallback_used: bool = False
@dataclass
class AdvancedVisualizationResults:
"""Aggregate results for advanced visualization processing"""
total_attempts: int = 0
successful: int = 0
failed: int = 0
skipped: int = 0
total_duration_ms: float = 0.0
attempts: List[AdvancedVisualizationAttempt] = field(default_factory=list)
output_files: List[str] = field(default_factory=list)
warnings: List[str] = field(default_factory=list)
errors: List[str] = field(default_factory=list)
def normalize_connection_format(conn_info: Dict[str, Any]) -> Dict[str, Any]:
"""Normalize connection format to handle both old and new formats."""
if "source_variables" in conn_info and "target_variables" in conn_info:
return conn_info
elif "source" in conn_info and "target" in conn_info:
return {
"source_variables": [conn_info["source"]],
"target_variables": [conn_info["target"]],
**{k: v for k, v in conn_info.items() if k not in ["source", "target"]},
}
else:
return conn_info
def _calculate_semantic_positions(
variables: List[Dict], connections: List[Dict]
) -> Any:
"""
Calculate meaningful 3D positions for variables based on semantic relationships.
Args:
variables: List of variable dictionaries
connections: List of connection dictionaries
Returns:
Array of 3D positions for each variable
"""
if not NUMPY_AVAILABLE or np is None:
return []
if not variables:
return np.array([])
n_vars = len(variables)
positions = np.zeros((n_vars, 3))
np.random.seed(42)
positions = np.random.rand(n_vars, 3) * 10
var_names = [var.get("name", f"var_{i}") for i, var in enumerate(variables)]
connection_matrix = np.zeros((n_vars, n_vars))
for conn_info in connections:
normalized_conn = normalize_connection_format(conn_info)
source_vars = normalized_conn.get("source_variables", [])
target_vars = normalized_conn.get("target_variables", [])
for source_var in source_vars:
for target_var in target_vars:
if source_var != target_var:
source_idx = None
target_idx = None
for idx, name in enumerate(var_names):
if name == source_var:
source_idx = idx
if name == target_var:
target_idx = idx
if source_idx is not None and target_idx is not None:
connection_matrix[source_idx, target_idx] = 1
for _ in range(50):
forces = np.zeros_like(positions)
for i in range(n_vars):
for j in range(n_vars):
if i != j:
diff = positions[i] - positions[j]
distance = np.linalg.norm(diff)
if distance > 0:
forces[i] += (diff / distance) * (1 / distance)
for i in range(n_vars):
for j in range(n_vars):
if connection_matrix[i, j] > 0:
diff = positions[j] - positions[i]
distance = np.linalg.norm(diff)
if distance > 0:
forces[i] += diff * (distance / 10)
positions += forces * 0.01
positions = (positions - positions.min()) / (positions.max() - positions.min()) * 10
return positions
def _generate_fallback_report(
model_name: str,
viz_type: str,
output_dir: Path,
model_data: Dict,
logger: logging.Logger,
) -> Any:
"""Generate recovery HTML report when advanced libraries unavailable"""
html_content = f"""<!DOCTYPE html>
<html>
<head>
<title>{model_name} - {viz_type.upper()} Visualization (Recovery)</title>
<style>
body {{ font-family: Arial, sans-serif; margin: 20px; }}
h1 {{ color: #333; }}
.info {{ background: #f0f0f0; padding: 10px; margin: 10px 0; }}
.data {{ background: #fff; border: 1px solid #ddd; padding: 10px; }}
pre {{ background: #f5f5f5; padding: 10px; overflow-x: auto; }}
</style>
</head>
<body>
<h1>{model_name} - {viz_type.upper()} Visualization</h1>
<div class="info">
<p><strong>Note:</strong> Advanced visualization libraries not available.
Showing basic model information instead.</p>
</div>
<div class="data">
<h2>Model Structure</h2>
<pre>{json.dumps(model_data, indent=2)}</pre>
</div>
</body>
</html>"""
output_file = output_dir / f"{model_name}_{viz_type}_fallback.html"
with open(output_file, "w") as f:
f.write(html_content)
logger.info(f"Generated recovery report: {output_file}")
def validate_visualization_data(
model_data: Dict, logger: logging.Logger
) -> Dict[str, Any]:
"""
Validate that visualization data is complete and meaningful.
Args:
model_data: Parsed model data
logger: Logger instance
Returns:
Validation results dictionary
"""
validation_results: dict[str, Any] = {
"overall_valid": True,
"warnings": [],
"errors": [],
"data_quality": {},
"recommendations": [],
}
try:
if not isinstance(model_data, dict):
validation_results["errors"].append("Model data is not a dictionary")
validation_results["overall_valid"] = False
return validation_results
required_keys: list[Any] = ["variables", "connections"]
for key in required_keys:
if key not in model_data:
validation_results["warnings"].append(f"Missing key: {key}")
elif not model_data[key]:
validation_results["warnings"].append(f"Empty data for key: {key}")
variables = model_data.get("variables", [])
if not variables:
validation_results["errors"].append("No variables found in model")
validation_results["overall_valid"] = False
else:
validation_results["data_quality"]["total_variables"] = len(variables)
valid_vars = 0
for var in variables:
if isinstance(var, dict) and "name" in var and "var_type" in var:
valid_vars += 1
else:
validation_results["warnings"].append(
f"Invalid variable structure: {var}"
)
validation_results["data_quality"]["valid_variables"] = valid_vars
validation_results["data_quality"]["variable_validity_rate"] = (
valid_vars / len(variables)
)
if valid_vars < len(variables) * 0.8:
validation_results["warnings"].append("Low variable validity rate")
connections = model_data.get("connections", [])
if not connections:
validation_results["warnings"].append("No connections found in model")
else:
validation_results["data_quality"]["total_connections"] = len(connections)
valid_connections = 0
for conn in connections:
if isinstance(conn, dict) and (
"source_variables" in conn or "target_variables" in conn
):
valid_connections += 1
else:
validation_results["warnings"].append(
f"Invalid connection structure: {conn}"
)
validation_results["data_quality"]["valid_connections"] = valid_connections
validation_results["data_quality"]["connection_validity_rate"] = (
valid_connections / len(connections)
)
pomdp_indicators: dict[str, Any] = {
"likelihood_matrix": 0,
"transition_matrix": 0,
"preference_vector": 0,
"prior_vector": 0,
"hidden_state": 0,
"observation": 0,
"policy": 0,
}
for var in variables:
if isinstance(var, dict):
var_type = var.get("var_type", "")
for indicator in pomdp_indicators:
if indicator in var_type:
pomdp_indicators[indicator] += 1
validation_results["data_quality"]["pomdp_indicators"] = pomdp_indicators
pomdp_score = sum(pomdp_indicators.values())
if pomdp_score >= 3:
validation_results["data_quality"]["is_pomdp_model"] = True
validation_results["data_quality"]["pomdp_completeness"] = (
pomdp_score / len(pomdp_indicators)
)
else:
validation_results["data_quality"]["is_pomdp_model"] = False
validation_results["warnings"].append(
"Model does not appear to be a complete POMDP"
)
if validation_results["data_quality"].get("variable_validity_rate", 1) < 0.9:
validation_results["recommendations"].append(
"Review variable parsing - high invalidity rate"
)
if validation_results["data_quality"].get("connection_validity_rate", 1) < 0.9:
validation_results["recommendations"].append(
"Review connection parsing - high invalidity rate"
)
if pomdp_score < 3:
validation_results["recommendations"].append(
"Model may not be a complete POMDP - check GNN structure"
)
if validation_results["errors"]:
validation_results["overall_valid"] = False
elif len(validation_results["warnings"]) > 2:
validation_results["overall_valid"] = False
validation_results["warnings"].append(
"Too many warnings - data quality may be poor"
)
if logger:
logger.info(
f"Validation completed: {validation_results['overall_valid']} (errors: {len(validation_results['errors'])}, warnings: {len(validation_results['warnings'])})"
)
except Exception as e:
validation_results["errors"].append(f"Validation error: {e}")
validation_results["overall_valid"] = False
if logger:
logger.error(f"Validation failed: {e}")
return validation_results