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Issues list

Define and Handle Superseries and Other Complex Queries api backlog database frontend
#169 opened Mar 19, 2018 by Miserlou
2
Salmon -- Alignment-based method and feature counts -- STAR backlog processor RNA-seq
#84 opened Jan 16, 2018 by kurtwheeler
1
Processor for Agilent 2-color data agilent backlog exploration SCIENCE! (A.K.A. research question)
#87 opened Jan 17, 2018 by jaclyn-taroni
7
Consider using alignment-based tools for small RNA quantification backlog SCIENCE! (A.K.A. research question)
#88 opened Jan 17, 2018 by jaclyn-taroni
Detect Agilent one color vs. two color experiments agilent backlog
#89 opened Jan 17, 2018 by jaclyn-taroni
22
Brainstorm: Example Experiments and Queries backlog documentation SCIENCE! (A.K.A. research question)
#97 opened Jan 22, 2018 by Miserlou
@jaclyn-taroni
6
Create genome indices for STAR backlog
#102 opened Jan 24, 2018 by kurtwheeler
Genes Must Become First-Class Data Items backlog database exploration future thoughts A conversation that has content that we want to come back to in the distant future.
#113 opened Feb 7, 2018 by Miserlou
5
Treehouse Data Compendia backlog enhancement
#118 opened Feb 13, 2018 by cgreene
1
How are Super series represented? backlog concept design
#124 opened Feb 19, 2018 by dvenprasad
@dvenprasad
Query Builder/ Advanced Search backlog design frontend low-fi prototype
#125 opened Feb 19, 2018 by dvenprasad
@dvenprasad
Handling of loop design microarray experiments agilent backlog exploration SCIENCE! (A.K.A. research question)
#138 opened Feb 22, 2018 by jaclyn-taroni
7 of 8 tasks
2
Gene fusions are of interest in the childhood cancer space. backlog
#78 opened Dec 5, 2017 by cgreene
Detect Affymetrix HGU133A-HGU133B "pairs" in an expression data-driven manner (automatically) backlog exploration SCIENCE! (A.K.A. research question)
#144 opened Feb 28, 2018 by jaclyn-taroni
7 of 8 tasks
1
Quality control for microarrays (Affymetrix, Illumina, and Agilent) backlog quality control
#202 opened Apr 15, 2018 by jaclyn-taroni
@jaclyn-taroni
Randomize reads before quantification with Salmon question salmon
#209 opened Apr 18, 2018 by jaclyn-taroni
19
Define rules for single experiments (i.e., not SuperSeries) with multiple platforms backlog
#210 opened Apr 19, 2018 by jaclyn-taroni
Perform Principal Component Analysis on Agilent Two Color Dataset agilent backlog data science dataviz SCIENCE! (A.K.A. research question)
#211 opened Apr 19, 2018 by Miserlou
7
GID Map processor for single experiments with multiple platforms backlog
#218 opened Apr 26, 2018 by cgreene
4 tasks done
Add an experiment discovery layer for Array Express to the Surveyor system. backlog surveyor
#224 opened Apr 26, 2018 by kurtwheeler
4 tasks done
Add an experiment discovery layer for GEO to the Surveyor system. backlog surveyor
#225 opened Apr 26, 2018 by kurtwheeler
4 tasks done
Add an experiment discovery layer for SRA to the Surveyor system. backlog surveyor
#226 opened Apr 26, 2018 by kurtwheeler
4 tasks done
Add Applied Filters component backlog design
#235 opened May 1, 2018 by dvenprasad
Support multiple publications associated with an experiment backlog question
#236 opened May 1, 2018 by jaclyn-taroni
4 tasks done
Dataset Request SRP135773
#3525 opened Jan 22, 2025 by alexslemonade-bot
ProTip! Exclude everything labeled bug with -label:bug.