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exgdas_enkf_update.sh
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#! /usr/bin/env bash
################################################################################
#### UNIX Script Documentation Block
# . .
# Script name: exgdas_enkf_update.sh
# Script description: Make global_enkf update
#
# Author: Rahul Mahajan Org: NCEP/EMC Date: 2017-03-02
#
# Abstract: This script runs the global_enkf update
#
# $Id$
#
# Attributes:
# Language: POSIX shell
#
################################################################################
source "${USHgfs}/preamble.sh"
# Directories.
pwd=$(pwd)
# Utilities
NCLEN=${NCLEN:-${USHgfs}/getncdimlen}
USE_CFP=${USE_CFP:-"NO"}
CFP_MP=${CFP_MP:-"NO"}
nm=""
if [ $CFP_MP = "YES" ]; then
nm=0
fi
APRUNCFP=${APRUNCFP:-""}
APRUN_ENKF=${APRUN_ENKF:-${APRUN:-""}}
NTHREADS_ENKF=${NTHREADS_ENKF:-${NTHREADS:-1}}
# Executables
ENKFEXEC=${ENKFEXEC:-${EXECgfs}/enkf.x}
# Cycling and forecast hour specific parameters
CDATE=${CDATE:-"2001010100"}
# Filenames.
GPREFIX=${GPREFIX:-""}
APREFIX=${APREFIX:-""}
SMOOTH_ENKF=${SMOOTH_ENKF:-"YES"}
GBIASe=${GBIASe:-${APREFIX}abias_int.ensmean}
CNVSTAT=${CNVSTAT:-${APREFIX}cnvstat}
OZNSTAT=${OZNSTAT:-${APREFIX}oznstat}
RADSTAT=${RADSTAT:-${APREFIX}radstat}
ENKFSTAT=${ENKFSTAT:-${APREFIX}enkfstat}
# Namelist parameters
USE_CORRELATED_OBERRS=${USE_CORRELATED_OBERRS:-"NO"}
NAM_ENKF=${NAM_ENKF:-""}
SATOBS_ENKF=${SATOBS_ENKF:-""}
OZOBS_ENKF=${OZOBS_ENKF:-""}
use_correlated_oberrs=${use_correlated_oberrs:-".false."}
if [ $USE_CORRELATED_OBERRS == "YES" ]; then
use_correlated_oberrs=".true."
fi
imp_physics=${imp_physics:-"99"}
lupp=${lupp:-".true."}
corrlength=${corrlength:-1250}
lnsigcutoff=${lnsigcutoff:-2.5}
analpertwt=${analpertwt:-0.85}
readin_localization_enkf=${readin_localization_enkf:-".true."}
reducedgrid=${reducedgrid:-".false."}
letkf_flag=${letkf_flag:-".false."}
getkf=${getkf:-".false."}
denkf=${denkf:-".false."}
nobsl_max=${nobsl_max:-10000}
lobsdiag_forenkf=${lobsdiag_forenkf:-".false."}
write_spread_diag=${write_spread_diag:-".false."}
cnvw_option=${cnvw_option:-".false."}
netcdf_diag=${netcdf_diag:-".true."}
modelspace_vloc=${modelspace_vloc:-".false."} # if true, 'vlocal_eig.dat' is needed
taperanalperts=${taperanalperts:-".false."}
IAUFHRS_ENKF=${IAUFHRS_ENKF:-6}
NMEM_ENS_MAX=${NMEM_ENS:-80}
if [ "${RUN}" = "enkfgfs" ]; then
DO_CALC_INCREMENT=${DO_CALC_INCREMENT_ENKF_GFS:-"NO"}
NMEM_ENS=${NMEM_ENS_GFS:-30}
ec_offset=${NMEM_ENS_GFS_OFFSET:-20}
mem_offset=$((ec_offset * cyc/6))
else
DO_CALC_INCREMENT=${DO_CALC_INCREMENT:-"NO"}
NMEM_ENS=${NMEM_ENS:-80}
mem_offset=0
fi
INCREMENTS_TO_ZERO=${INCREMENTS_TO_ZERO:-"'NONE'"}
GSI_SOILANAL=${GSI_SOILANAL:-"NO"}
################################################################################
ATMGES_ENSMEAN="${COM_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}atmf006.ensmean.nc"
LONB_ENKF=${LONB_ENKF:-$($NCLEN $ATMGES_ENSMEAN grid_xt)} # get LONB_ENKF
LATB_ENKF=${LATB_ENKF:-$($NCLEN $ATMGES_ENSMEAN grid_yt)} # get LATB_ENFK
LEVS_ENKF=${LEVS_ENKF:-$($NCLEN $ATMGES_ENSMEAN pfull)} # get LEVS_ENFK
use_gfs_ncio=".true."
use_gfs_nemsio=".false."
paranc=${paranc:-".true."}
WRITE_INCR_ZERO="incvars_to_zero= $INCREMENTS_TO_ZERO,"
if [ $DO_CALC_INCREMENT = "YES" ]; then
write_fv3_incr=".false."
else
write_fv3_incr=".true."
fi
LATA_ENKF=${LATA_ENKF:-$LATB_ENKF}
LONA_ENKF=${LONA_ENKF:-$LONB_ENKF}
SATANGL=${SATANGL:-${FIXgfs}/gsi/global_satangbias.txt}
SATINFO=${SATINFO:-${FIXgfs}/gsi/global_satinfo.txt}
CONVINFO=${CONVINFO:-${FIXgfs}/gsi/global_convinfo.txt}
OZINFO=${OZINFO:-${FIXgfs}/gsi/global_ozinfo.txt}
SCANINFO=${SCANINFO:-${FIXgfs}/gsi/global_scaninfo.txt}
HYBENSINFO=${HYBENSINFO:-${FIXgfs}/gsi/global_hybens_info.l${LEVS_ENKF}.txt}
ANAVINFO=${ANAVINFO:-${FIXgfs}/gsi/global_anavinfo.l${LEVS_ENKF}.txt}
VLOCALEIG=${VLOCALEIG:-${FIXgfs}/gsi/vlocal_eig_l${LEVS_ENKF}.dat}
ENKF_SUFFIX="s"
[[ $SMOOTH_ENKF = "NO" ]] && ENKF_SUFFIX=""
################################################################################
# Preprocessing
mkdata=NO
if [ ! -d $DATA ]; then
mkdata=YES
mkdir -p $DATA
fi
cd $DATA || exit 99
################################################################################
# Fixed files
$NLN $SATANGL satbias_angle
$NLN $SATINFO satinfo
$NLN $SCANINFO scaninfo
$NLN $CONVINFO convinfo
$NLN $OZINFO ozinfo
$NLN $HYBENSINFO hybens_info
$NLN $ANAVINFO anavinfo
$NLN $VLOCALEIG vlocal_eig.dat
# Bias correction coefficients based on the ensemble mean
${NLN} "${COM_ATMOS_ANALYSIS_STAT}/${GBIASe}" "satbias_in"
################################################################################
if [ $USE_CFP = "YES" ]; then
[[ -f $DATA/untar.sh ]] && rm $DATA/untar.sh
[[ -f $DATA/mp_untar.sh ]] && rm $DATA/mp_untar.sh
cat > $DATA/untar.sh << EOFuntar
#!/bin/sh
memchar=\$1
COM_ATMOS_ANALYSIS=\$2
flist="$CNVSTAT $OZNSTAT $RADSTAT"
for ftype in \$flist; do
if [ \$memchar = "ensmean" ]; then
fname=\${COM_ATMOS_ANALYSIS}/\${ftype}.ensmean
else
fname=\${COM_ATMOS_ANALYSIS}/\${ftype}
fi
tar -xvf \$fname
done
EOFuntar
chmod 755 $DATA/untar.sh
fi
################################################################################
# Ensemble guess, observational data and analyses/increments
flist="$CNVSTAT $OZNSTAT $RADSTAT"
if [ $USE_CFP = "YES" ]; then
echo "${nm} ${DATA}/untar.sh ensmean ${COM_ATMOS_ANALYSIS_STAT}" | tee -a "${DATA}/mp_untar.sh"
if [ ${CFP_MP:-"NO"} = "YES" ]; then
nm=$((nm+1))
fi
else
for ftype in $flist; do
fname="${COM_ATMOS_ANALYSIS_STAT}/${ftype}.ensmean"
tar -xvf $fname
done
fi
nfhrs=$(echo $IAUFHRS_ENKF | sed 's/,/ /g')
for imem in $(seq 1 $NMEM_ENS); do
smem=$((imem + mem_offset))
if (( smem > NMEM_ENS_MAX )); then
smem=$((smem - NMEM_ENS_MAX))
fi
gmemchar="mem"$(printf %03i $smem)
memchar="mem"$(printf %03i $imem)
MEMDIR=${gmemchar} RUN=${GDUMP_ENS} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -x \
COM_ATMOS_HISTORY_MEM_PREV:COM_ATMOS_HISTORY_TMPL
MEMDIR=${memchar} YMD=${PDY} HH=${cyc} declare_from_tmpl -x \
COM_ATMOS_ANALYSIS_MEM:COM_ATMOS_ANALYSIS_TMPL
if [ $lobsdiag_forenkf = ".false." ]; then
if [ $USE_CFP = "YES" ]; then
echo "${nm} ${DATA}/untar.sh ${memchar} ${COM_ATMOS_ANALYSIS_MEM}" | tee -a "${DATA}/mp_untar.sh"
if [ ${CFP_MP:-"NO"} = "YES" ]; then
nm=$((nm+1))
fi
else
for ftype in $flist; do
fname="${COM_ATMOS_ANALYSIS_MEM}/${ftype}"
tar -xvf $fname
done
fi
fi
mkdir -p "${COM_ATMOS_ANALYSIS_MEM}"
for FHR in $nfhrs; do
${NLN} "${COM_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}atmf00${FHR}${ENKF_SUFFIX}.nc" \
"sfg_${PDY}${cyc}_fhr0${FHR}_${memchar}"
if [ $GSI_SOILANAL = "YES" ]; then
${NLN} "${COM_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}sfcf00${FHR}${ENKF_SUFFIX}.nc" \
"bfg_${PDY}${cyc}_fhr0${FHR}_${memchar}"
fi
if [ $cnvw_option = ".true." ]; then
${NLN} "${COM_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}sfcf00${FHR}.nc" \
"sfgsfc_${PDY}${cyc}_fhr0${FHR}_${memchar}"
fi
if [ $FHR -eq 6 ]; then
if [ $DO_CALC_INCREMENT = "YES" ]; then
${NLN} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX}atmanl.nc" \
"sanl_${PDY}${cyc}_fhr0${FHR}_${memchar}"
else
${NLN} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX}atminc.nc" \
"incr_${PDY}${cyc}_fhr0${FHR}_${memchar}"
fi
else
if [ $DO_CALC_INCREMENT = "YES" ]; then
${NLN} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX}atma00${FHR}.nc" \
"sanl_${PDY}${cyc}_fhr0${FHR}_${memchar}"
else
${NLN} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX}atmi00${FHR}.nc" \
"incr_${PDY}${cyc}_fhr0${FHR}_${memchar}"
fi
fi
if [ $GSI_SOILANAL = "YES" ]; then
${NLN} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX}sfci00${FHR}.nc" \
"sfcincr_${PDY}${cyc}_fhr0${FHR}_${memchar}"
fi
done
done
# Ensemble mean guess
for FHR in $nfhrs; do
${NLN} "${COM_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}atmf00${FHR}.ensmean.nc" \
"sfg_${PDY}${cyc}_fhr0${FHR}_ensmean"
if [ $cnvw_option = ".true." ]; then
${NLN} "${COM_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}sfcf00${FHR}.ensmean.nc" \
"sfgsfc_${PDY}${cyc}_fhr0${FHR}_ensmean"
fi
done
if [[ $USE_CFP = "YES" ]]; then
chmod 755 $DATA/mp_untar.sh
ncmd=$(cat $DATA/mp_untar.sh | wc -l)
if [[ $ncmd -gt 0 ]]; then
ncmd_max=$((ncmd < max_tasks_per_node ? ncmd : max_tasks_per_node))
APRUNCFP=$(eval echo $APRUNCFP)
$APRUNCFP $DATA/mp_untar.sh
export err=$?; err_chk
fi
fi
################################################################################
# Create global_enkf namelist
cat > enkf.nml << EOFnml
&nam_enkf
datestring="${PDY}${cyc}",datapath="$DATA/",
analpertwtnh=${analpertwt},analpertwtsh=${analpertwt},analpertwttr=${analpertwt},
covinflatemax=1.e2,covinflatemin=1,pseudo_rh=.false.,iassim_order=0,
corrlengthnh=${corrlength},corrlengthsh=${corrlength},corrlengthtr=${corrlength},
lnsigcutoffnh=${lnsigcutoff},lnsigcutoffsh=${lnsigcutoff},lnsigcutofftr=${lnsigcutoff},
lnsigcutoffpsnh=${lnsigcutoff},lnsigcutoffpssh=${lnsigcutoff},lnsigcutoffpstr=${lnsigcutoff},
lnsigcutoffsatnh=${lnsigcutoff},lnsigcutoffsatsh=${lnsigcutoff},lnsigcutoffsattr=${lnsigcutoff},
obtimelnh=1.e30,obtimelsh=1.e30,obtimeltr=1.e30,
saterrfact=1.0,numiter=0,
sprd_tol=1.e30,paoverpb_thresh=0.98,
nlons=$LONA_ENKF,nlats=$LATA_ENKF,nlevs=$LEVS_ENKF,nanals=$NMEM_ENS,
deterministic=.true.,sortinc=.true.,lupd_satbiasc=.false.,
reducedgrid=${reducedgrid},readin_localization=${readin_localization_enkf}.,
use_gfs_nemsio=${use_gfs_nemsio},use_gfs_ncio=${use_gfs_ncio},imp_physics=$imp_physics,lupp=$lupp,
univaroz=.false.,adp_anglebc=.true.,angord=4,use_edges=.false.,emiss_bc=.true.,
letkf_flag=${letkf_flag},nobsl_max=${nobsl_max},denkf=${denkf},getkf=${getkf}.,
nhr_anal=${IAUFHRS_ENKF},nhr_state=${IAUFHRS_ENKF},
lobsdiag_forenkf=${lobsdiag_forenkf},taperanalperts=${taperanalperts},
write_spread_diag=$write_spread_diag,
modelspace_vloc=$modelspace_vloc,
use_correlated_oberrs=${use_correlated_oberrs},
netcdf_diag=$netcdf_diag,cnvw_option=$cnvw_option,
paranc=$paranc,write_fv3_incr=$write_fv3_incr,
$WRITE_INCR_ZERO
$NAM_ENKF
/
&satobs_enkf
sattypes_rad(1) = 'amsua_n15', dsis(1) = 'amsua_n15',
sattypes_rad(2) = 'amsua_n18', dsis(2) = 'amsua_n18',
sattypes_rad(3) = 'amsua_n19', dsis(3) = 'amsua_n19',
sattypes_rad(4) = 'amsub_n16', dsis(4) = 'amsub_n16',
sattypes_rad(5) = 'amsub_n17', dsis(5) = 'amsub_n17',
sattypes_rad(6) = 'amsua_aqua', dsis(6) = 'amsua_aqua',
sattypes_rad(7) = 'amsua_metop-a', dsis(7) = 'amsua_metop-a',
sattypes_rad(8) = 'airs_aqua', dsis(8) = 'airs_aqua',
sattypes_rad(9) = 'hirs3_n17', dsis(9) = 'hirs3_n17',
sattypes_rad(10)= 'hirs4_n19', dsis(10)= 'hirs4_n19',
sattypes_rad(11)= 'hirs4_metop-a', dsis(11)= 'hirs4_metop-a',
sattypes_rad(12)= 'mhs_n18', dsis(12)= 'mhs_n18',
sattypes_rad(13)= 'mhs_n19', dsis(13)= 'mhs_n19',
sattypes_rad(14)= 'mhs_metop-a', dsis(14)= 'mhs_metop-a',
sattypes_rad(15)= 'goes_img_g11', dsis(15)= 'imgr_g11',
sattypes_rad(16)= 'goes_img_g12', dsis(16)= 'imgr_g12',
sattypes_rad(17)= 'goes_img_g13', dsis(17)= 'imgr_g13',
sattypes_rad(18)= 'goes_img_g14', dsis(18)= 'imgr_g14',
sattypes_rad(19)= 'goes_img_g15', dsis(19)= 'imgr_g15',
sattypes_rad(20)= 'avhrr_n18', dsis(20)= 'avhrr3_n18',
sattypes_rad(21)= 'avhrr_metop-a', dsis(21)= 'avhrr3_metop-a',
sattypes_rad(22)= 'avhrr_n19', dsis(22)= 'avhrr3_n19',
sattypes_rad(23)= 'amsre_aqua', dsis(23)= 'amsre_aqua',
sattypes_rad(24)= 'ssmis_f16', dsis(24)= 'ssmis_f16',
sattypes_rad(25)= 'ssmis_f17', dsis(25)= 'ssmis_f17',
sattypes_rad(26)= 'ssmis_f18', dsis(26)= 'ssmis_f18',
sattypes_rad(27)= 'ssmis_f19', dsis(27)= 'ssmis_f19',
sattypes_rad(28)= 'ssmis_f20', dsis(28)= 'ssmis_f20',
sattypes_rad(29)= 'sndrd1_g11', dsis(29)= 'sndrD1_g11',
sattypes_rad(30)= 'sndrd2_g11', dsis(30)= 'sndrD2_g11',
sattypes_rad(31)= 'sndrd3_g11', dsis(31)= 'sndrD3_g11',
sattypes_rad(32)= 'sndrd4_g11', dsis(32)= 'sndrD4_g11',
sattypes_rad(33)= 'sndrd1_g12', dsis(33)= 'sndrD1_g12',
sattypes_rad(34)= 'sndrd2_g12', dsis(34)= 'sndrD2_g12',
sattypes_rad(35)= 'sndrd3_g12', dsis(35)= 'sndrD3_g12',
sattypes_rad(36)= 'sndrd4_g12', dsis(36)= 'sndrD4_g12',
sattypes_rad(37)= 'sndrd1_g13', dsis(37)= 'sndrD1_g13',
sattypes_rad(38)= 'sndrd2_g13', dsis(38)= 'sndrD2_g13',
sattypes_rad(39)= 'sndrd3_g13', dsis(39)= 'sndrD3_g13',
sattypes_rad(40)= 'sndrd4_g13', dsis(40)= 'sndrD4_g13',
sattypes_rad(41)= 'sndrd1_g14', dsis(41)= 'sndrD1_g14',
sattypes_rad(42)= 'sndrd2_g14', dsis(42)= 'sndrD2_g14',
sattypes_rad(43)= 'sndrd3_g14', dsis(43)= 'sndrD3_g14',
sattypes_rad(44)= 'sndrd4_g14', dsis(44)= 'sndrD4_g14',
sattypes_rad(45)= 'sndrd1_g15', dsis(45)= 'sndrD1_g15',
sattypes_rad(46)= 'sndrd2_g15', dsis(46)= 'sndrD2_g15',
sattypes_rad(47)= 'sndrd3_g15', dsis(47)= 'sndrD3_g15',
sattypes_rad(48)= 'sndrd4_g15', dsis(48)= 'sndrD4_g15',
sattypes_rad(49)= 'iasi_metop-a', dsis(49)= 'iasi_metop-a',
sattypes_rad(50)= 'seviri_m08', dsis(50)= 'seviri_m08',
sattypes_rad(51)= 'seviri_m09', dsis(51)= 'seviri_m09',
sattypes_rad(52)= 'seviri_m10', dsis(52)= 'seviri_m10',
sattypes_rad(53)= 'seviri_m11', dsis(53)= 'seviri_m11',
sattypes_rad(54)= 'amsua_metop-b', dsis(54)= 'amsua_metop-b',
sattypes_rad(55)= 'hirs4_metop-b', dsis(55)= 'hirs4_metop-b',
sattypes_rad(56)= 'mhs_metop-b', dsis(56)= 'mhs_metop-b',
sattypes_rad(57)= 'iasi_metop-b', dsis(57)= 'iasi_metop-b',
sattypes_rad(58)= 'avhrr_metop-b', dsis(58)= 'avhrr3_metop-b',
sattypes_rad(59)= 'atms_npp', dsis(59)= 'atms_npp',
sattypes_rad(60)= 'atms_n20', dsis(60)= 'atms_n20',
sattypes_rad(61)= 'cris_npp', dsis(61)= 'cris_npp',
sattypes_rad(62)= 'cris-fsr_npp', dsis(62)= 'cris-fsr_npp',
sattypes_rad(63)= 'cris-fsr_n20', dsis(63)= 'cris-fsr_n20',
sattypes_rad(64)= 'gmi_gpm', dsis(64)= 'gmi_gpm',
sattypes_rad(65)= 'saphir_meghat', dsis(65)= 'saphir_meghat',
sattypes_rad(66)= 'amsua_metop-c', dsis(66)= 'amsua_metop-c',
sattypes_rad(67)= 'mhs_metop-c', dsis(67)= 'mhs_metop-c',
sattypes_rad(68)= 'ahi_himawari8', dsis(68)= 'ahi_himawari8',
sattypes_rad(69)= 'abi_g16', dsis(69)= 'abi_g16',
sattypes_rad(70)= 'abi_g17', dsis(70)= 'abi_g17',
sattypes_rad(71)= 'iasi_metop-c', dsis(71)= 'iasi_metop-c',
sattypes_rad(72)= 'viirs-m_npp', dsis(72)= 'viirs-m_npp',
sattypes_rad(73)= 'viirs-m_j1', dsis(73)= 'viirs-m_j1',
sattypes_rad(74)= 'avhrr_metop-c', dsis(74)= 'avhrr3_metop-c',
sattypes_rad(75)= 'abi_g18', dsis(75)= 'abi_g18',
sattypes_rad(76)= 'ahi_himawari9', dsis(76)= 'ahi_himawari9',
sattypes_rad(77)= 'viirs-m_j2', dsis(77)= 'viirs-m_j2',
sattypes_rad(78)= 'atms_n21', dsis(78)= 'atms_n21',
sattypes_rad(79)= 'cris-fsr_n21', dsis(79)= 'cris-fsr_n21',
$SATOBS_ENKF
/
&ozobs_enkf
sattypes_oz(1) = 'sbuv2_n16',
sattypes_oz(2) = 'sbuv2_n17',
sattypes_oz(3) = 'sbuv2_n18',
sattypes_oz(4) = 'sbuv2_n19',
sattypes_oz(5) = 'omi_aura',
sattypes_oz(6) = 'gome_metop-a',
sattypes_oz(7) = 'gome_metop-b',
sattypes_oz(8) = 'mls30_aura',
sattypes_oz(9) = 'ompsnp_npp',
sattypes_oz(10) = 'ompstc8_npp',
sattypes_oz(11) = 'ompstc8_n20',
sattypes_oz(12) = 'ompsnp_n20',
sattypes_oz(13) = 'ompslp_npp',
sattypes_oz(14) = 'ompstc8_n21',
sattypes_oz(15) = 'ompsnp_n21',
sattypes_oz(16) = 'gome_metop-c',
$OZOBS_ENKF
/
EOFnml
################################################################################
# Run enkf update
export OMP_NUM_THREADS=$NTHREADS_ENKF
export pgm=$ENKFEXEC
. prep_step
$NCP $ENKFEXEC $DATA
$APRUN_ENKF ${DATA}/$(basename $ENKFEXEC) 1>stdout 2>stderr
export err=$?; err_chk
# Cat runtime output files.
cat stdout stderr > "${COM_ATMOS_ANALYSIS_STAT}/${ENKFSTAT}"
################################################################################
# Postprocessing
cd "$pwd"
[[ $mkdata = "YES" ]] && rm -rf "${DATA}"
exit ${err}