Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Types of changes

Added

for new features.

Changed

for changes in existing functionality.

Deprecated

for soon-to-be removed features.

Removed

for now removed features.

Fixed

for any bug fixes.

Security

in case of vulnerabilities.

[Unreleased] - YYYY-MM-DD

Added

Added support for species tree from gene trees inference using ASTRAL

Changed

Performance and security updates

Removed

Dropping macOS 10.13 / 10.14 support

[2.0.13] - 2024-09-29

Changed

Performance and security updates

Removed

Dropping Windows 7/8/8.1 Support

[2.0.12] - 2024-09-29

Changed

Performance and security updates

[2.0.11] - 2024-09-28

Changed

Updated to include the latest binaries for raxml-ng on Mac and Linux (1.2.2).

[2.0.10] - 2022-09-13

Changed

Performance and security updates

[2.0.9] - 2022-06-30

Added

Added substantially more logging in case an error occurrs

Changed

Some maintenance and smaller UI updates

Removed

Removed ModelTest from Windows 7 and lower

Fixed

Fixed problems using RAxML and ModelTest with Mac M1 laptops

[2.0.8] - 2022-05-09

Changed

Updated example files

Fixed

Left aligned Run buttom to always be visible
Made substitution model options available also on selecting GTRCAT for raxml 8.x
Added GAMMA to non-GTR model labels for raxml 8.x

[2.0.7] - 2022-02-22

Changed

Updated to include the latest binaries for raxml-ng on Mac and Linux (1.1.0).
Allow copy RAxML command

Fixed

Fixed Linux issue running raxml-ng binaries

[2.0.6] - 2021-10-05

Changed

Updated to include the latest binaries for raxml-ng on Mac and Linux (1.0.3).
Updated to include the latest binaries for RAxML on Windows 8 and 10 (8.2.12).
A bit of restyling.

Fixed

Fixed a bug that only one error could be reported.
Fixed a bug in outgroup selection.

[2.0.5] - 2021-05-09

Added

Using RAxML 8 you can now select these substitution models for nucleotide data as well: JC69, K80, HKY85.
ModelTest will also recognize these models if they are the best fit.

Fixed

Fixed an error when restarting the app after an update.

[2.0.4] - 2021-04-22

Fixed

Fixed a crash with ModelTest-NG on Windows.

[2.0.3] - 2021-04-14

Added

Modeltest-NG is now also available on Windows (Tested on Windows 10 only).

Fixed

Fixed some smaller styling issues.

[2.0.2] - 2021-03-29

Added

Display more detailed information when an input alignment has been modified.
Allow completely unknown binary sequences.

Fixed

Small bugfix: Remove "null" showing up in SnackBar text

[2.0.1] - 2021-03-04

Added

Some common errors in alignments will be automatically fixed when loading an alignment. This includes, replacing illegal characters with underscores in taxon names, disambiguating duplicated taxon names, shortening taxon names that are too long.

Changed

Updated to include the latest binaries for raxml-ng on Mac and Linux (1.0.1).

Fixed

Now correctly recognizes ? and N in nucleotide sequences.
Fixed a small bug that showed output files that are not a result of the actual analysis.
Added the correct citation for the release paper.
Fixed a bug where selecting the output dir would lead to the change in all tabs.
Fixed a bug where adding an alignment would add it in all tabs.
Fixed a crash when running ModelTest-NG on binary or multistate alignments.
Fixed a crash when the input alignment did not exist when starting a run.
Fixed a bug that deleted last parts of a taxon names with whitespaces.

[2.0.0] - 2017-06-20