Update nightly tests CI file

Author: melund

.github/workflows/create-compare-reference-linux.yml

@@ -45,11 +45,11 @@ jobs:
           license_server_password: ${{ secrets.LICENSE_PASSWORD }}
           license_server: ${{ secrets.LICENSE_SERVER }}
           run: |
+            cd Tests
             pytest --runslow \
               -n 2 \
               --anytest-output=.output \
-              --anytest-name=${{ env.GIT_REFERENCE }} \
-              Tests
+              --anytest-name=${{ env.GIT_REFERENCE }} 
 
       - name: Azure CLI script
         uses: azure/CLI@v1
@@ -60,9 +60,9 @@ jobs:
             ams_version="${{ steps.RunAnyBody.outputs.anybody_version }}"
             az storage blob delete-batch \
               --source ${ams_version//\./-} \
-              --pattern ${{ env.GIT_REFERENCE }}/**/*
+              --pattern ${{ env.GIT_REFERENCE }}/**/* || true
             
-            az storage blob upload-batch   
+            az storage blob upload-batch \
                --destination ${ams_version//\./-} \
                --source  .output/${{ env.GIT_REFERENCE }} \
                --destination-path ${{ env.GIT_REFERENCE }}

.github/workflows/nighly-tests.yml

@@ -5,12 +5,9 @@ on:
     - cron: 0 3 * * *
   workflow_dispatch:
     inputs:
-      linux_container:
-        description: 'Which container to run AnyBody on Linux.'
-        default: ghcr.io/anybody/anybodycon-linux:latest
-        required: true
       debug_config:
-        description: 'A debug environment varibles which is set when running on linux.'
+        description: 'A debug environment varibles which is set when running tests.'
+        required: false
         default: ""
 
 
@@ -31,13 +28,16 @@ jobs:
     steps:
       - uses: actions/checkout@v2
 
+      - name: Set debug env var
+        echo "${{ github.event.inputs.debug_config }}" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append
+
       - name: Install conda
         run: | 
           Invoke-Webrequest -URI https://anaconda.org/conda-forge/micromamba/0.16.0/download/win-64/micromamba-0.16.0-0.tar.bz2 -OutFile ~\micromamba.tar.bz2
           (Get-FileHash ~\micromamba.tar.bz2).hash -eq "d406ee990640123b05b5b55a720720513d3ad8eed6d3377324e4842c6f141308"
           $env:Path = "C:\PROGRA~1\Git\usr\bin;" + $env:Path
           tar -xvjf ~/micromamba.tar.bz2 --strip-components 2 -C ~ Library/bin/micromamba.exe
-          echo "MAMBA_ROOT_PREFIX=$HOME\micromamba" >> $GITHUB_ENV
+          echo "MAMBA_ROOT_PREFIX=$HOME\micromamba" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append
 
       - name: Create conda environment
         run: | 
@@ -55,7 +55,6 @@ jobs:
 
   test-linux:
     runs-on: [self-hosted, linux]
-    container: ${{ github.event.inputs.linux_container || 'ghcr.io/anybody/anybodycon-linux:latest' }}
 
     env:
       # Triggers a warning at 20 deg muscles angles
@@ -66,16 +65,14 @@ jobs:
 
       - name: Set debug env var
         run: echo ${{ github.event.inputs.debug_config }} >> $GITHUB_ENV
-        
-      - name: use newest anypytools
-        run: |
-          git clone https://github.com/AnyBody-Research-Group/AnyPyTools.git
-          pip install ./AnyPyTools
-          
 
-      - name: Run full AMMR tests
-        env:
-          RLM_LICENSE: [email protected]
-          RLM_LICENSE_PASSWORD: ${{ secrets.LICENSE_PASSWORD }}
-        run: pytest -n 2 Tests
+      - name: Run AnyBody tests
+        uses: anybody/[email protected]
+        with:
+          license_server_password: ${{ secrets.LICENSE_PASSWORD }}
+          license_server: ${{ secrets.LICENSE_SERVER }}
+          run: |
+            cd Tests 
+            pytest --runslow -n 2
+