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python: can't open file 'update_rsID_bim_ega.py': [Errno 2] No such file or directory #1

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nrosewick opened this issue Jan 22, 2021 · 0 comments

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@nrosewick
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Dear Dr Atkinson,

Thank you for providing the code to execute LAI prior to Tractor.

When exectuing the CohortDataQC_final.sh script I've this error :

python: can't open file 'update_rsID_bim_ega.py': [Errno 2] No such file or directory

In the files listed on the github there is no update_rsID_bim_ega.py file. There is update_rsID_bim_arg.py instead.

Also it seems to be python2 and not python3.

After updating the path to the python script in CohortDataQC_final.sh and forcing the script to use python2, the script is now working well ;)

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