from Travis-CI to Github Actions

Author: danro9685

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/check-development.yml

@@ -0,0 +1,45 @@
+on:
+  push:
+    branches: master
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: macOS-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@master
+
+      - uses: r-lib/actions/setup-pandoc@master
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        uses: actions/cache@v1
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install dependencies
+        run: |
+          install.packages("remotes")
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_dev("pkgdown")
+        shell: Rscript {0}
+
+      - name: Install package
+        run: R CMD INSTALL .
+
+      - name: Deploy package
+        run: pkgdown::deploy_to_branch(new_process = FALSE)
+        shell: Rscript {0}

.github/workflows/check-master.yml

@@ -36,5 +36,5 @@ biocViews:
 	BiomedicalInformatics,
 	SingleCell,
 	SomaticMutation
-RoxygenNote: 7.1.0
+RoxygenNote: 7.1.1
 VignetteBuilder: knitr

.github/workflows/pkgdown.yaml

@@ -1,10 +1,9 @@
 # Longitudinal Analysis of Cancer Evolution (LACE)
 ================
 
-| Branch              | Stato CI      |
-|---------------------|---------------|
-| master | [![Build Status](https://travis-ci.org/BIMIB-DISCo/LACE.svg?branch=master)](https://travis-ci.org/BIMIB-DISCo/LACE) |
-| development | [![Build Status](https://travis-ci.org/BIMIB-DISCo/LACE.svg?branch=development)](https://travis-ci.org/BIMIB-DISCo/LACE) |
+[![Actions Status](https://github.com/BIMIB-DISCo/TRONCO/workflows/check-master/badge.svg)](https://github.com/BIMIB-DISCo/TRONCO/actions?query=workflow%3Acheck-master)
+[![Actions Status](https://github.com/BIMIB-DISCo/TRONCO/workflows/check-development/badge.svg)](https://github.com/BIMIB-DISCo/TRONCO/actions?query=workflow%3Acheck-development)
+[![codecov](https://codecov.io/gh/BIMIB-DISCo/TRONCO/branch/master/graph/badge.svg)](https://codecov.io/gh/BIMIB-DISCo/TRONCO)
 
 ================
 

.travis.yml

@@ -2,7 +2,13 @@
 \title{News for package \pkg{LACE}}
 \encoding{UTF-8}
 
-\section{Changes in Version 1.0.0}{
+\section{Changes in Version 1.1.1}{
+    \itemize{
+        \item From Travis-CI to Github Actions.
+    }
+}
+
+\section{Changes in Version 1.1.0}{
     \itemize{
         \item Package released in April 2020.
     }