Wrong finishing message when pipeline_manager is aborted

[jaimeozaez]

If pipeline manager is run, and for some reason it is unable to complete successfully, even in this case the final message says "All samples were copied successfully!!".

               ___   ___       ___  ___  ___                           
   \    |--|   |   \ |    |    |    |    |   | \      /  
    \   \  /   |__ / |__  |    |___ |    |   |  \    /   
    /   /  \   |  \  |    |    |    |    |   |   \  /    
   /    |--|   |   \ |___ |___ |___ |___ |___|    \/     

    RELECOV-tools version 1.4.0
 Collecting samples for COD-2402-AND-HUCSC
 Collecting samples for COD-2436-PV-HUD
 Collecting samples for COD-2440-AND-HUVR
 Collecting samples for COD-2450-AND-HUVNG
Found a total of 273 samples
Splitting samples based on ['organism', 'sequencing_instrument_platform', 'enrichment_panel', 'enrichment_panel_version']...
Data splitted into 1 groups
Processing group 20250224_GROUP01 with fields: {'enrichment_panel': 'ARTIC', 'enrichment_panel_version': 'ARTIC v5.3.2', 'organism': 'Severe acute respiratory syndrome coronavirus 2 [NCBITaxon:2697049]', 
'sequencing_instrument_platform': 'Illumina [OBI:0000759]'}...
Creating folder for group 20250224_GROUP01
 Copying sample:  27818178
 Copying sample:  27925009
...
...
...
 Copying sample:  499149971
 Copying sample:  499149972
Unable to copy files from 273 samples in group 20250224_GROUP01
? Do you want to delete analysis folder /data/ucct/bi/scratch_tmp/bi/20250226_RLV_20250224_GROUP01_icasas_C? Y/N Yes
All samples were copied successfully!!
Finished execution