diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
index c83e642c..b68c9182 100644
--- a/.github/workflows/deploy.yml
+++ b/.github/workflows/deploy.yml
@@ -37,20 +37,20 @@ jobs:
git fetch origin main
git checkout main
echo "Building main branch output..."
- pnpm build --outDir dist
+ pnpm build
- name: Build dev branch
run: |
git fetch origin dev
git checkout dev
echo "Building dev branch output..."
- pnpm build --outDir dist/dev
- touch dist/.nojekyll
+ pnpm build
+ touch sites/app/dist/.nojekyll
- name: Upload build output
uses: actions/upload-pages-artifact@v3
with:
- path: dist
+ path: sites/app/dist
deploy:
runs-on: ubuntu-latest
diff --git a/.github/workflows/npm-publish-dev.yml b/.github/workflows/npm-publish-dev.yml
index e02fbff5..f8418973 100644
--- a/.github/workflows/npm-publish-dev.yml
+++ b/.github/workflows/npm-publish-dev.yml
@@ -27,15 +27,18 @@ jobs:
- name: Update prerelease version
id: pre-release-version
- uses: adobe/update-prerelease-npm-version@v1.0.0
+ uses: adobe/update-prerelease-npm-version@v1.2.0
with:
pre-release-tag: "dev"
+ - name: Sync package versions
+ run: pnpm -r exec npm version ${{ steps.pre-release-version.outputs.pre-release-version }} --no-git-tag-version
+
- name: Install dependencies
run: pnpm install
- name: Build package
- run: pnpm run build
+ run: pnpm build:viewer
- name: Configure npm authentication
run: |
@@ -46,4 +49,4 @@ jobs:
- name: Publish to npm
env:
NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }}
- run: pnpm publish --tag dev --access public --no-git-checks
+ run: pnpm publish viewer --tag dev --access public --no-git-checks
diff --git a/.github/workflows/npm-publish.yml b/.github/workflows/npm-publish.yml
index 40dac00b..d2c24c66 100644
--- a/.github/workflows/npm-publish.yml
+++ b/.github/workflows/npm-publish.yml
@@ -28,7 +28,7 @@ jobs:
run: pnpm install
- name: Build package
- run: pnpm run build
+ run: pnpm build:viewer
- name: Configure npm authentication
run: |
@@ -39,4 +39,4 @@ jobs:
- name: Publish to npm
env:
NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }}
- run: pnpm publish --access public --no-git-checks
+ run: pnpm publish viewer --access public --no-git-checks
diff --git a/.releaserc.json b/.releaserc.json
index c6b2bac0..2e95fe3e 100644
--- a/.releaserc.json
+++ b/.releaserc.json
@@ -11,6 +11,12 @@
"changelogTitle": "# Changelog"
}
],
+ [
+ "@semantic-release/exec",
+ {
+ "prepareCmd": "pnpm -r exec npm version ${nextRelease.version} --no-git-tag-version"
+ }
+ ],
[
"@semantic-release/npm",
{
@@ -20,7 +26,7 @@
[
"@semantic-release/git",
{
- "assets": ["package.json", "package-lock.json", "CHANGELOG.md"],
+ "assets": ["package.json", "viewer/package.json", "sites/app/package.json", "pnpm-lock.yaml", "CHANGELOG.md"],
"message": "chore(release): ${nextRelease.version} [skip ci]\n\n${nextRelease.notes}"
}
],
diff --git a/.vscode/settings.json b/.vscode/settings.json
index 0506de37..4e21757a 100644
--- a/.vscode/settings.json
+++ b/.vscode/settings.json
@@ -8,5 +8,8 @@
},
"[typescript]": {
"editor.defaultFormatter": "biomejs.biome"
+ },
+ "[javascript]": {
+ "editor.defaultFormatter": "biomejs.biome"
}
}
diff --git a/main.ts b/main.ts
deleted file mode 100644
index 4df6713c..00000000
--- a/main.ts
+++ /dev/null
@@ -1,52 +0,0 @@
-import debounce from "just-debounce-it";
-import * as vizarr from "./src/index";
-
-async function main() {
- console.log(`vizarr v${vizarr.version}: https://github.com/BioNGFF/vizarr`);
- // biome-ignore lint/style/noNonNullAssertion: We know the element exists
- const viewer = await vizarr.createViewer(document.querySelector("#root")!);
- const url = new URL(window.location.href);
-
- if (!url.searchParams.has("source")) {
- return;
- }
-
- // see if we have initial viewState
- const viewStateString = url.searchParams.get("viewState");
- if (viewStateString) {
- const viewState = JSON.parse(viewStateString);
- viewer.setViewState(viewState);
- }
-
- // Add event listener to sync viewState as query param.
- // Debounce to limit how quickly we are pushing to browser history
- viewer.on(
- "viewStateChange",
- debounce((update: vizarr.ViewState) => {
- const url = new URL(window.location.href);
- url.searchParams.set("viewState", JSON.stringify(update));
- window.history.replaceState(window.history.state, "", decodeURIComponent(url.href));
- }, 200),
- );
-
- // parse image config
- // @ts-expect-error - TODO: validate config
- const config: vizarr.ImageLayerConfig = {};
-
- for (const [key, value] of url.searchParams) {
- // @ts-expect-error - TODO: validate config
- config[key] = value;
- }
-
- // Make sure the source URL is decoded.
- viewer.addImage(config);
-
- const newLocation = decodeURIComponent(url.href);
-
- // Only update history if the new location is different from the current
- if (window.location.href !== newLocation) {
- window.history.replaceState(window.history.state, "", newLocation);
- }
-}
-
-main();
diff --git a/netlify.toml b/netlify.toml
new file mode 100644
index 00000000..5f054a9a
--- /dev/null
+++ b/netlify.toml
@@ -0,0 +1,3 @@
+[build]
+ command = "pnpm run build"
+ publish = "sites/app/dist"
diff --git a/package.json b/package.json
index 560449bc..1586ce18 100644
--- a/package.json
+++ b/package.json
@@ -1,41 +1,22 @@
{
- "name": "@biongff/vizarr",
+ "name": "biongff-monorepo",
"version": "1.1.1",
- "type": "module",
+ "author": "BioNGFF",
+ "license": "MIT",
"scripts": {
- "dev": "vite",
- "build": "npm run check && vite build",
- "preview": "vite preview",
+ "dev": "pnpm --filter app dev",
"lint": "biome ci",
"fix": "biome check --write",
- "check": "tsc"
- },
- "dependencies": {
- "@deck.gl/core": "~9.0.0",
- "@deck.gl/geo-layers": "~9.0.0",
- "@deck.gl/layers": "~9.0.0",
- "@emotion/react": "^11.14.0",
- "@emotion/styled": "^11.14.1",
- "@hms-dbmi/viv": "~0.17.2",
- "@mui/icons-material": "^7.2.0",
- "@mui/material": "^7.2.0",
- "@vivjs/types": "~0.17.0",
- "@zarrita/storage": "0.1.3",
- "deck.gl": "~9.0.0",
- "jotai": "^1.0.0",
- "just-debounce-it": "^3.1.1",
- "math.gl": "^4.1.0",
- "p-map": "^7.0.3",
- "quick-lru": "^7.0.0",
- "react": "^18.2.0",
- "react-dom": "^18.2.0",
- "react-is": "18.3.1",
- "zarrita": "0.5.0"
+ "check": "pnpm build:viewer && pnpm -r run check",
+ "build:viewer": "pnpm --filter vizarr build",
+ "build:app": "pnpm --filter app build",
+ "build": "pnpm build:viewer && pnpm build:app"
},
"devDependencies": {
"@biomejs/biome": "^1.9.4",
"@semantic-release/changelog": "^6.0.3",
"@semantic-release/commit-analyzer": "^13.0.1",
+ "@semantic-release/exec": "^7.1.0",
"@semantic-release/git": "^10.0.1",
"@semantic-release/github": "^12.0.2",
"@semantic-release/npm": "^13.1.1",
@@ -48,9 +29,6 @@
"typescript": "^5.8.2",
"vite": "^6.2.7"
},
- "overrides": {
- "react-is": "^18.3.1"
- },
"packageManager": "pnpm@9.5.0",
"pnpm": {
"patchedDependencies": {
diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml
index 51b9fab3..a4e95ac6 100644
--- a/pnpm-lock.yaml
+++ b/pnpm-lock.yaml
@@ -12,6 +12,100 @@ patchedDependencies:
importers:
.:
+ devDependencies:
+ '@biomejs/biome':
+ specifier: ^1.9.4
+ version: 1.9.4
+ '@semantic-release/changelog':
+ specifier: ^6.0.3
+ version: 6.0.3(semantic-release@25.0.2(typescript@5.8.2))
+ '@semantic-release/commit-analyzer':
+ specifier: ^13.0.1
+ version: 13.0.1(semantic-release@25.0.2(typescript@5.8.2))
+ '@semantic-release/exec':
+ specifier: ^7.1.0
+ version: 7.1.0(semantic-release@25.0.2(typescript@5.8.2))
+ '@semantic-release/git':
+ specifier: ^10.0.1
+ version: 10.0.1(semantic-release@25.0.2(typescript@5.8.2))
+ '@semantic-release/github':
+ specifier: ^12.0.2
+ version: 12.0.2(semantic-release@25.0.2(typescript@5.8.2))
+ '@semantic-release/npm':
+ specifier: ^13.1.1
+ version: 13.1.1(semantic-release@25.0.2(typescript@5.8.2))
+ '@semantic-release/release-notes-generator':
+ specifier: ^14.1.0
+ version: 14.1.0(semantic-release@25.0.2(typescript@5.8.2))
+ '@types/node':
+ specifier: ^24.3.0
+ version: 24.3.0
+ '@types/react':
+ specifier: ^18.3.10
+ version: 18.3.18
+ '@types/react-dom':
+ specifier: ^18.2.18
+ version: 18.3.5(@types/react@18.3.18)
+ '@vitejs/plugin-react':
+ specifier: ^4.3.4
+ version: 4.3.4(vite@6.2.7(@types/node@24.3.0))
+ semantic-release:
+ specifier: ^25.0.2
+ version: 25.0.2(typescript@5.8.2)
+ typescript:
+ specifier: ^5.8.2
+ version: 5.8.2
+ vite:
+ specifier: ^6.2.7
+ version: 6.2.7(@types/node@24.3.0)
+
+ sites/app:
+ dependencies:
+ '@biongff/vizarr':
+ specifier: workspace:*
+ version: link:../../viewer
+ '@emotion/react':
+ specifier: ^11.14.0
+ version: 11.14.0(@types/react@18.3.18)(react@18.3.1)
+ '@emotion/styled':
+ specifier: ^11.14.1
+ version: 11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1)
+ '@mui/icons-material':
+ specifier: ^7.2.0
+ version: 7.3.4(@mui/material@7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1))(@types/react@18.3.18)(react@18.3.1)
+ '@mui/material':
+ specifier: ^7.2.0
+ version: 7.3.4(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@emotion/styled@11.14.1(@emotion/react@11.14.0(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react@18.3.1))(@types/react@18.3.18)(react-dom@18.3.1(react@18.3.1))(react@18.3.1)
+ just-debounce-it:
+ specifier: ^3.1.1
+ version: 3.2.0
+ react:
+ specifier: ^18.2.0
+ version: 18.3.1
+ react-dom:
+ specifier: ^18.2.0
+ version: 18.3.1(react@18.3.1)
+ devDependencies:
+ '@types/node':
+ specifier: ^24.3.0
+ version: 24.3.0
+ '@types/react':
+ specifier: ^18.3.10
+ version: 18.3.18
+ '@types/react-dom':
+ specifier: ^18.2.18
+ version: 18.3.5(@types/react@18.3.18)
+ '@vitejs/plugin-react':
+ specifier: ^4.3.4
+ version: 4.3.4(vite@6.2.7(@types/node@24.3.0))
+ typescript:
+ specifier: ^5.8.2
+ version: 5.8.2
+ vite:
+ specifier: ^6.2.7
+ version: 6.2.7(@types/node@24.3.0)
+
+ viewer:
dependencies:
'@deck.gl/core':
specifier: ~9.0.0
@@ -49,9 +143,6 @@ importers:
jotai:
specifier: ^1.0.0
version: 1.13.1(@babel/core@7.26.9)(@babel/template@7.26.9)(react@18.3.1)
- just-debounce-it:
- specifier: ^3.1.1
- version: 3.2.0
math.gl:
specifier: ^4.1.0
version: 4.1.0
@@ -74,27 +165,6 @@ importers:
specifier: 0.5.0
version: 0.5.0
devDependencies:
- '@biomejs/biome':
- specifier: ^1.9.4
- version: 1.9.4
- '@semantic-release/changelog':
- specifier: ^6.0.3
- version: 6.0.3(semantic-release@25.0.2(typescript@5.8.2))
- '@semantic-release/commit-analyzer':
- specifier: ^13.0.1
- version: 13.0.1(semantic-release@25.0.2(typescript@5.8.2))
- '@semantic-release/git':
- specifier: ^10.0.1
- version: 10.0.1(semantic-release@25.0.2(typescript@5.8.2))
- '@semantic-release/github':
- specifier: ^12.0.2
- version: 12.0.2(semantic-release@25.0.2(typescript@5.8.2))
- '@semantic-release/npm':
- specifier: ^13.1.1
- version: 13.1.1(semantic-release@25.0.2(typescript@5.8.2))
- '@semantic-release/release-notes-generator':
- specifier: ^14.1.0
- version: 14.1.0(semantic-release@25.0.2(typescript@5.8.2))
'@types/node':
specifier: ^24.3.0
version: 24.3.0
@@ -107,15 +177,15 @@ importers:
'@vitejs/plugin-react':
specifier: ^4.3.4
version: 4.3.4(vite@6.2.7(@types/node@24.3.0))
- semantic-release:
- specifier: ^25.0.2
- version: 25.0.2(typescript@5.8.2)
typescript:
specifier: ^5.8.2
version: 5.8.2
vite:
specifier: ^6.2.7
version: 6.2.7(@types/node@24.3.0)
+ vite-plugin-dts:
+ specifier: ^4.5.4
+ version: 4.5.4(@types/node@24.3.0)(rollup@4.40.1)(typescript@5.8.2)(vite@6.2.7(@types/node@24.3.0))
packages:
@@ -182,10 +252,18 @@ packages:
resolution: {integrity: sha512-4A/SCr/2KLd5jrtOMFzaKjVtAei3+2r/NChoBNoZ3EyP/+GlhoaEGoWOZUmFmoITP7zOJyHIMm+DYRd8o3PvHA==}
engines: {node: '>=6.9.0'}
+ '@babel/helper-string-parser@7.27.1':
+ resolution: {integrity: sha512-qMlSxKbpRlAridDExk92nSobyDdpPijUq2DW6oDnUqd0iOGxmQjyqhMIihI9+zv4LPyZdRje2cavWPbCbWm3eA==}
+ engines: {node: '>=6.9.0'}
+
'@babel/helper-validator-identifier@7.25.9':
resolution: {integrity: sha512-Ed61U6XJc3CVRfkERJWDz4dJwKe7iLmmJsbOGu9wSloNSFttHV0I8g6UAgb7qnK5ly5bGLPd4oXZlxCdANBOWQ==}
engines: {node: '>=6.9.0'}
+ '@babel/helper-validator-identifier@7.28.5':
+ resolution: {integrity: sha512-qSs4ifwzKJSV39ucNjsvc6WVHs6b7S03sOh2OcHF9UHfVPqWWALUsNUVzhSBiItjRZoLHx7nIarVjqKVusUZ1Q==}
+ engines: {node: '>=6.9.0'}
+
'@babel/helper-validator-option@7.25.9':
resolution: {integrity: sha512-e/zv1co8pp55dNdEcCynfj9X7nyUKUXoUEwfXqaZt0omVOmDe9oOTdKStH4GmAw6zxMFs50ZayuMfHDKlO7Tfw==}
engines: {node: '>=6.9.0'}
@@ -199,6 +277,11 @@ packages:
engines: {node: '>=6.0.0'}
hasBin: true
+ '@babel/parser@7.28.5':
+ resolution: {integrity: sha512-KKBU1VGYR7ORr3At5HAtUQ+TV3SzRCXmA/8OdDZiLDBIZxVyzXuztPjfLd3BV1PRAQGCMWWSHYhL0F8d5uHBDQ==}
+ engines: {node: '>=6.0.0'}
+ hasBin: true
+
'@babel/plugin-transform-react-jsx-self@7.25.9':
resolution: {integrity: sha512-y8quW6p0WHkEhmErnfe58r7x0A70uKphQm8Sp8cV7tjNQwK56sNVK0M73LK3WuYmsuyrftut4xAkjjgU0twaMg==}
engines: {node: '>=6.9.0'}
@@ -227,6 +310,10 @@ packages:
resolution: {integrity: sha512-Y3IR1cRnOxOCDvMmNiym7XpXQ93iGDDPHx+Zj+NM+rg0fBaShfQLkg+hKPaZCEvg5N/LeCo4+Rj/i3FuJsIQaw==}
engines: {node: '>=6.9.0'}
+ '@babel/types@7.28.5':
+ resolution: {integrity: sha512-qQ5m48eI/MFLQ5PxQj4PFaprjyCTLI37ElWMmNs0K8Lk3dVeOdNpB3ks8jc7yM5CDmVC73eMVk/trk3fgmrUpA==}
+ engines: {node: '>=6.9.0'}
+
'@biomejs/biome@1.9.4':
resolution: {integrity: sha512-1rkd7G70+o9KkTn5KLmDYXihGoTaIGO9PIIN2ZB7UJxFrWw04CZHPYiMRjYsaDvVV7hP1dYNRLxSANLaBFGpog==}
engines: {node: '>=14.21.3'}
@@ -609,6 +696,14 @@ packages:
'@interactjs/types@1.10.27':
resolution: {integrity: sha512-BUdv0cvs4H5ODuwft2Xp4eL8Vmi3LcihK42z0Ft/FbVJZoRioBsxH+LlsBdK4tAie7PqlKGy+1oyOncu1nQ6eA==}
+ '@isaacs/balanced-match@4.0.1':
+ resolution: {integrity: sha512-yzMTt9lEb8Gv7zRioUilSglI0c0smZ9k5D65677DLWLtWJaXIS3CqcGyUFByYKlnUj6TkjLVs54fBl6+TiGQDQ==}
+ engines: {node: 20 || >=22}
+
+ '@isaacs/brace-expansion@5.0.0':
+ resolution: {integrity: sha512-ZT55BDLV0yv0RBm2czMiZ+SqCGO7AvmOM3G/w2xhVPH+te0aKgFjmBvGlL1dH+ql2tgGO3MVrbb3jCKyvpgnxA==}
+ engines: {node: 20 || >=22}
+
'@jridgewell/gen-mapping@0.3.8':
resolution: {integrity: sha512-imAbBGkb+ebQyxKgzv5Hu2nmROxoDOXHh80evxdoXNOrvAnVx7zimzc1Oo5h9RlfV4vPXaE2iM5pOFbvOCClWA==}
engines: {node: '>=6.0.0'}
@@ -624,6 +719,9 @@ packages:
'@jridgewell/sourcemap-codec@1.5.0':
resolution: {integrity: sha512-gv3ZRaISU3fjPAgNsriBRqGWQL6quFx04YMPW/zD8XMLsU32mhCCbfbO6KZFLjvYpCZ8zyDEgqsgf+PwPaM7GQ==}
+ '@jridgewell/sourcemap-codec@1.5.5':
+ resolution: {integrity: sha512-cYQ9310grqxueWbl+WuIUIaiUaDcj7WOq5fVhEljNVgRfOUhY9fy2zTvfoqWsnebh8Sl70VScFbICvJnLKB0Og==}
+
'@jridgewell/trace-mapping@0.3.25':
resolution: {integrity: sha512-vNk6aEwybGtawWmy/PzwnGDOjCkLWSD2wqvjGGAgOAwCGWySYXfYoxt00IJkTF+8Lb57DwOb3Aa0o9CApepiYQ==}
@@ -800,6 +898,19 @@ packages:
'@math.gl/web-mercator@4.1.0':
resolution: {integrity: sha512-HZo3vO5GCMkXJThxRJ5/QYUYRr3XumfT8CzNNCwoJfinxy5NtKUd7dusNTXn7yJ40UoB8FMIwkVwNlqaiRZZAw==}
+ '@microsoft/api-extractor-model@7.32.2':
+ resolution: {integrity: sha512-Ussc25rAalc+4JJs9HNQE7TuO9y6jpYQX9nWD1DhqUzYPBr3Lr7O9intf+ZY8kD5HnIqeIRJX7ccCT0QyBy2Ww==}
+
+ '@microsoft/api-extractor@7.55.2':
+ resolution: {integrity: sha512-1jlWO4qmgqYoVUcyh+oXYRztZde/pAi7cSVzBz/rc+S7CoVzDasy8QE13dx6sLG4VRo8SfkkLbFORR6tBw4uGQ==}
+ hasBin: true
+
+ '@microsoft/tsdoc-config@0.18.0':
+ resolution: {integrity: sha512-8N/vClYyfOH+l4fLkkr9+myAoR6M7akc8ntBJ4DJdWH2b09uVfr71+LTMpNyG19fNqWDg8KEDZhx5wxuqHyGjw==}
+
+ '@microsoft/tsdoc@0.16.0':
+ resolution: {integrity: sha512-xgAyonlVVS+q7Vc7qLW0UrJU7rSFcETRWsqdXZtjzRU8dF+6CkozTK4V4y1LwOX7j8r/vHphjDeMeGI4tNGeGA==}
+
'@mui/core-downloads-tracker@7.3.4':
resolution: {integrity: sha512-BIktMapG3r4iXwIhYNpvk97ZfYWTreBBQTWjQKbNbzI64+ULHfYavQEX2w99aSWHS58DvXESWIgbD9adKcUOBw==}
@@ -975,6 +1086,15 @@ packages:
'@probe.gl/stats@4.1.0':
resolution: {integrity: sha512-EI413MkWKBDVNIfLdqbeNSJTs7ToBz/KVGkwi3D+dQrSIkRI2IYbWGAU3xX+D6+CI4ls8ehxMhNpUVMaZggDvQ==}
+ '@rollup/pluginutils@5.3.0':
+ resolution: {integrity: sha512-5EdhGZtnu3V88ces7s53hhfK5KSASnJZv8Lulpc04cWO3REESroJXg73DFsOmgbU2BhwV0E20bu2IDZb3VKW4Q==}
+ engines: {node: '>=14.0.0'}
+ peerDependencies:
+ rollup: ^1.20.0||^2.0.0||^3.0.0||^4.0.0
+ peerDependenciesMeta:
+ rollup:
+ optional: true
+
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cpu: [arm]
@@ -1075,6 +1195,36 @@ packages:
cpu: [x64]
os: [win32]
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engines: {node: '>=18'}
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+ engines: {node: '>=20.8.1'}
+ peerDependencies:
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@@ -1320,6 +1479,35 @@ packages:
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'@deck.gl/layers': ~9.0.33
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+ peerDependencies:
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+ peerDependenciesMeta:
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+
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engines: {bun: '>=0.7.0', deno: '>=1.0.0', node: '>=16.5.0'}
+ acorn@8.15.0:
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+ engines: {node: '>=0.4.0'}
+ hasBin: true
+
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engines: {node: '>=18'}
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+ peerDependencies:
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+ peerDependenciesMeta:
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+ peerDependencies:
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+ peerDependenciesMeta:
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+
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engines: {node: '>=10', npm: '>=6'}
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engines: {node: '>=8'}
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peerDependencies:
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engines: {node: '>=10.13.0'}
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deprecated: Use @arcgis/core instead.
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engines: {node: ^18.19.0 || >=20.5.0}
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engines: {node: '>=4'}
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engines: {node: '>=8'}
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engines: {node: '>=14'}
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engines: {node: '>=0.10.0'}
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engines: {node: '>=8'}
+ supports-color@8.1.1:
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+ engines: {node: '>=10'}
+
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engines: {node: '>=14.18'}
@@ -2913,6 +3245,9 @@ packages:
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hasBin: true
+ ufo@1.6.1:
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engines: {node: '>=0.8.0'}
@@ -2962,6 +3297,9 @@ packages:
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@@ -2975,6 +3313,15 @@ packages:
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+ peerDependencies:
+ typescript: '*'
+ vite: '*'
+ peerDependenciesMeta:
+ vite:
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+
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engines: {node: ^18.0.0 || ^20.0.0 || >=22.0.0}
@@ -3015,6 +3362,9 @@ packages:
yaml:
optional: true
+ vscode-uri@3.1.0:
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+
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+ yallist@4.0.0:
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+
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engines: {node: '>= 6'}
@@ -3213,8 +3566,12 @@ snapshots:
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+ '@babel/helper-string-parser@7.27.1': {}
+
'@babel/helper-validator-identifier@7.25.9': {}
+ '@babel/helper-validator-identifier@7.28.5': {}
+
'@babel/helper-validator-option@7.25.9': {}
'@babel/helpers@7.26.9':
@@ -3226,6 +3583,10 @@ snapshots:
dependencies:
'@babel/types': 7.26.9
+ '@babel/parser@7.28.5':
+ dependencies:
+ '@babel/types': 7.28.5
+
'@babel/plugin-transform-react-jsx-self@7.25.9(@babel/core@7.26.9)':
dependencies:
'@babel/core': 7.26.9
@@ -3261,6 +3622,11 @@ snapshots:
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'@babel/helper-validator-identifier': 7.25.9
+ '@babel/types@7.28.5':
+ dependencies:
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+ '@babel/helper-validator-identifier': 7.28.5
+
'@biomejs/biome@1.9.4':
optionalDependencies:
'@biomejs/cli-darwin-arm64': 1.9.4
@@ -3677,6 +4043,12 @@ snapshots:
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+ '@isaacs/balanced-match@4.0.1': {}
+
+ '@isaacs/brace-expansion@5.0.0':
+ dependencies:
+ '@isaacs/balanced-match': 4.0.1
+
'@jridgewell/gen-mapping@0.3.8':
dependencies:
'@jridgewell/set-array': 1.2.1
@@ -3689,6 +4061,8 @@ snapshots:
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+ '@jridgewell/sourcemap-codec@1.5.5': {}
+
'@jridgewell/trace-mapping@0.3.25':
dependencies:
'@jridgewell/resolve-uri': 3.1.2
@@ -3975,6 +4349,42 @@ snapshots:
dependencies:
'@math.gl/core': 4.1.0
+ '@microsoft/api-extractor-model@7.32.2(@types/node@24.3.0)':
+ dependencies:
+ '@microsoft/tsdoc': 0.16.0
+ '@microsoft/tsdoc-config': 0.18.0
+ '@rushstack/node-core-library': 5.19.1(@types/node@24.3.0)
+ transitivePeerDependencies:
+ - '@types/node'
+
+ '@microsoft/api-extractor@7.55.2(@types/node@24.3.0)':
+ dependencies:
+ '@microsoft/api-extractor-model': 7.32.2(@types/node@24.3.0)
+ '@microsoft/tsdoc': 0.16.0
+ '@microsoft/tsdoc-config': 0.18.0
+ '@rushstack/node-core-library': 5.19.1(@types/node@24.3.0)
+ '@rushstack/rig-package': 0.6.0
+ '@rushstack/terminal': 0.19.5(@types/node@24.3.0)
+ '@rushstack/ts-command-line': 5.1.5(@types/node@24.3.0)
+ diff: 8.0.2
+ lodash: 4.17.21
+ minimatch: 10.0.3
+ resolve: 1.22.10
+ semver: 7.5.4
+ source-map: 0.6.1
+ typescript: 5.8.2
+ transitivePeerDependencies:
+ - '@types/node'
+
+ '@microsoft/tsdoc-config@0.18.0':
+ dependencies:
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+ ajv: 8.12.0
+ jju: 1.4.0
+ resolve: 1.22.10
+
+ '@microsoft/tsdoc@0.16.0': {}
+
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@@ -4155,6 +4565,14 @@ snapshots:
'@probe.gl/stats@4.1.0': {}
+ '@rollup/pluginutils@5.3.0(rollup@4.40.1)':
+ dependencies:
+ '@types/estree': 1.0.7
+ estree-walker: 2.0.2
+ picomatch: 4.0.3
+ optionalDependencies:
+ rollup: 4.40.1
+
'@rollup/rollup-android-arm-eabi@4.40.1':
optional: true
@@ -4215,6 +4633,45 @@ snapshots:
'@rollup/rollup-win32-x64-msvc@4.40.1':
optional: true
+ '@rushstack/node-core-library@5.19.1(@types/node@24.3.0)':
+ dependencies:
+ ajv: 8.13.0
+ ajv-draft-04: 1.0.0(ajv@8.13.0)
+ ajv-formats: 3.0.1(ajv@8.13.0)
+ fs-extra: 11.3.2
+ import-lazy: 4.0.0
+ jju: 1.4.0
+ resolve: 1.22.10
+ semver: 7.5.4
+ optionalDependencies:
+ '@types/node': 24.3.0
+
+ '@rushstack/problem-matcher@0.1.1(@types/node@24.3.0)':
+ optionalDependencies:
+ '@types/node': 24.3.0
+
+ '@rushstack/rig-package@0.6.0':
+ dependencies:
+ resolve: 1.22.10
+ strip-json-comments: 3.1.1
+
+ '@rushstack/terminal@0.19.5(@types/node@24.3.0)':
+ dependencies:
+ '@rushstack/node-core-library': 5.19.1(@types/node@24.3.0)
+ '@rushstack/problem-matcher': 0.1.1(@types/node@24.3.0)
+ supports-color: 8.1.1
+ optionalDependencies:
+ '@types/node': 24.3.0
+
+ '@rushstack/ts-command-line@5.1.5(@types/node@24.3.0)':
+ dependencies:
+ '@rushstack/terminal': 0.19.5(@types/node@24.3.0)
+ '@types/argparse': 1.0.38
+ argparse: 1.0.10
+ string-argv: 0.3.2
+ transitivePeerDependencies:
+ - '@types/node'
+
'@sec-ant/readable-stream@0.4.1': {}
'@semantic-release/changelog@6.0.3(semantic-release@25.0.2(typescript@5.8.2))':
@@ -4243,6 +4700,18 @@ snapshots:
'@semantic-release/error@4.0.0': {}
+ '@semantic-release/exec@7.1.0(semantic-release@25.0.2(typescript@5.8.2))':
+ dependencies:
+ '@semantic-release/error': 4.0.0
+ aggregate-error: 3.1.0
+ debug: 4.4.0
+ execa: 9.6.0
+ lodash-es: 4.17.21
+ parse-json: 8.3.0
+ semantic-release: 25.0.2(typescript@5.8.2)
+ transitivePeerDependencies:
+ - supports-color
+
'@semantic-release/git@10.0.1(semantic-release@25.0.2(typescript@5.8.2))':
dependencies:
'@semantic-release/error': 3.0.0
@@ -4346,6 +4815,8 @@ snapshots:
'@turf/invariant': 5.2.0
'@turf/meta': 5.2.0
+ '@types/argparse@1.0.38': {}
+
'@types/babel__core@7.20.5':
dependencies:
'@babel/parser': 7.26.9
@@ -4619,6 +5090,51 @@ snapshots:
- '@luma.gl/shadertools'
- '@luma.gl/webgl'
+ '@volar/language-core@2.4.26':
+ dependencies:
+ '@volar/source-map': 2.4.26
+
+ '@volar/source-map@2.4.26': {}
+
+ '@volar/typescript@2.4.26':
+ dependencies:
+ '@volar/language-core': 2.4.26
+ path-browserify: 1.0.1
+ vscode-uri: 3.1.0
+
+ '@vue/compiler-core@3.5.25':
+ dependencies:
+ '@babel/parser': 7.28.5
+ '@vue/shared': 3.5.25
+ entities: 4.5.0
+ estree-walker: 2.0.2
+ source-map-js: 1.2.1
+
+ '@vue/compiler-dom@3.5.25':
+ dependencies:
+ '@vue/compiler-core': 3.5.25
+ '@vue/shared': 3.5.25
+
+ '@vue/compiler-vue2@2.7.16':
+ dependencies:
+ de-indent: 1.0.2
+ he: 1.2.0
+
+ '@vue/language-core@2.2.0(typescript@5.8.2)':
+ dependencies:
+ '@volar/language-core': 2.4.26
+ '@vue/compiler-dom': 3.5.25
+ '@vue/compiler-vue2': 2.7.16
+ '@vue/shared': 3.5.25
+ alien-signals: 0.4.14
+ minimatch: 9.0.5
+ muggle-string: 0.4.1
+ path-browserify: 1.0.1
+ optionalDependencies:
+ typescript: 5.8.2
+
+ '@vue/shared@3.5.25': {}
+
'@webcomponents/shadycss@1.11.2': {}
'@zarrita/storage@0.1.3':
@@ -4628,6 +5144,8 @@ snapshots:
'@zip.js/zip.js@2.7.72': {}
+ acorn@8.15.0: {}
+
agent-base@7.1.4: {}
aggregate-error@3.1.0:
@@ -4640,6 +5158,30 @@ snapshots:
clean-stack: 5.3.0
indent-string: 5.0.0
+ ajv-draft-04@1.0.0(ajv@8.13.0):
+ optionalDependencies:
+ ajv: 8.13.0
+
+ ajv-formats@3.0.1(ajv@8.13.0):
+ optionalDependencies:
+ ajv: 8.13.0
+
+ ajv@8.12.0:
+ dependencies:
+ fast-deep-equal: 3.1.3
+ json-schema-traverse: 1.0.0
+ require-from-string: 2.0.2
+ uri-js: 4.4.1
+
+ ajv@8.13.0:
+ dependencies:
+ fast-deep-equal: 3.1.3
+ json-schema-traverse: 1.0.0
+ require-from-string: 2.0.2
+ uri-js: 4.4.1
+
+ alien-signals@0.4.14: {}
+
ansi-escapes@7.2.0:
dependencies:
environment: 1.1.0
@@ -4676,6 +5218,8 @@ snapshots:
cosmiconfig: 7.1.0
resolve: 1.22.10
+ balanced-match@1.0.2: {}
+
base64-js@1.5.1:
optional: true
@@ -4683,6 +5227,10 @@ snapshots:
bottleneck@2.19.5: {}
+ brace-expansion@2.0.2:
+ dependencies:
+ balanced-match: 1.0.2
+
braces@3.0.3:
dependencies:
fill-range: 7.1.1
@@ -4797,10 +5345,16 @@ snapshots:
array-ify: 1.0.0
dot-prop: 5.3.0
+ compare-versions@6.1.1: {}
+
composed-offset-position@0.0.6(@floating-ui/utils@0.2.10):
dependencies:
'@floating-ui/utils': 0.2.10
+ confbox@0.1.8: {}
+
+ confbox@0.2.2: {}
+
config-chain@1.1.13:
dependencies:
ini: 1.3.8
@@ -4903,6 +5457,8 @@ snapshots:
dayjs@1.11.18: {}
+ de-indent@1.0.2: {}
+
debug@4.4.0:
dependencies:
ms: 2.1.3
@@ -4936,6 +5492,8 @@ snapshots:
dependencies:
core-assert: 0.2.1
+ diff@8.0.2: {}
+
dir-glob@3.0.1:
dependencies:
path-type: 4.0.0
@@ -4970,6 +5528,8 @@ snapshots:
graceful-fs: 4.2.11
tapable: 2.2.3
+ entities@4.5.0: {}
+
entities@6.0.1: {}
env-ci@11.2.0:
@@ -5023,6 +5583,8 @@ snapshots:
esri-loader@3.7.0: {}
+ estree-walker@2.0.2: {}
+
eventemitter3@5.0.1: {}
execa@5.1.1:
@@ -5064,6 +5626,8 @@ snapshots:
strip-final-newline: 4.0.0
yoctocolors: 2.1.2
+ exsolve@1.0.8: {}
+
fast-content-type-parse@3.0.0: {}
fast-deep-equal@3.1.3: {}
@@ -5202,6 +5766,8 @@ snapshots:
dependencies:
function-bind: 1.1.2
+ he@1.2.0: {}
+
highlight.js@10.7.3: {}
hoist-non-react-statics@3.3.2:
@@ -5256,6 +5822,8 @@ snapshots:
transitivePeerDependencies:
- supports-color
+ import-lazy@4.0.0: {}
+
import-meta-resolve@4.2.0: {}
indent-string@4.0.0: {}
@@ -5319,6 +5887,8 @@ snapshots:
java-properties@1.0.2: {}
+ jju@1.4.0: {}
+
jotai@1.13.1(@babel/core@7.26.9)(@babel/template@7.26.9)(react@18.3.1):
dependencies:
react: 18.3.1
@@ -5340,6 +5910,8 @@ snapshots:
json-parse-even-better-errors@2.3.1: {}
+ json-schema-traverse@1.0.0: {}
+
json5@2.2.3: {}
jsonfile@6.2.0:
@@ -5357,6 +5929,8 @@ snapshots:
just-debounce-it@3.2.0: {}
+ kolorist@1.8.0: {}
+
ktx-parse@0.7.1: {}
lerc@3.0.0: {}
@@ -5390,6 +5964,12 @@ snapshots:
pify: 3.0.0
strip-bom: 3.0.0
+ local-pkg@1.1.2:
+ dependencies:
+ mlly: 1.8.0
+ pkg-types: 2.3.0
+ quansync: 0.2.11
+
locate-path@2.0.0:
dependencies:
p-locate: 2.0.0
@@ -5425,6 +6005,10 @@ snapshots:
dependencies:
yallist: 3.1.1
+ lru-cache@6.0.0:
+ dependencies:
+ yallist: 4.0.0
+
luxon@3.5.0: {}
lz4js@0.2.0:
@@ -5434,6 +6018,10 @@ snapshots:
lzw-tiff-decoder@0.1.1: {}
+ magic-string@0.30.21:
+ dependencies:
+ '@jridgewell/sourcemap-codec': 1.5.5
+
make-asynchronous@1.0.1:
dependencies:
p-event: 6.0.1
@@ -5478,6 +6066,14 @@ snapshots:
mimic-fn@4.0.0: {}
+ minimatch@10.0.3:
+ dependencies:
+ '@isaacs/brace-expansion': 5.0.0
+
+ minimatch@9.0.5:
+ dependencies:
+ brace-expansion: 2.0.2
+
minimist@1.2.8: {}
mjolnir.js@2.7.3:
@@ -5485,6 +6081,13 @@ snapshots:
'@types/hammerjs': 2.0.46
hammerjs: 2.0.8
+ mlly@1.8.0:
+ dependencies:
+ acorn: 8.15.0
+ pathe: 2.0.3
+ pkg-types: 1.3.1
+ ufo: 1.6.1
+
moment-timezone@0.5.47:
dependencies:
moment: 2.30.1
@@ -5493,6 +6096,8 @@ snapshots:
ms@2.1.3: {}
+ muggle-string@0.4.1: {}
+
mz@2.7.0:
dependencies:
any-promise: 1.3.0
@@ -5646,6 +6251,8 @@ snapshots:
dependencies:
entities: 6.0.1
+ path-browserify@1.0.1: {}
+
path-exists@3.0.0: {}
path-key@3.1.1: {}
@@ -5656,6 +6263,8 @@ snapshots:
path-type@4.0.0: {}
+ pathe@2.0.3: {}
+
pbf@3.3.0:
dependencies:
ieee754: 1.2.1
@@ -5674,6 +6283,18 @@ snapshots:
find-up: 2.1.0
load-json-file: 4.0.0
+ pkg-types@1.3.1:
+ dependencies:
+ confbox: 0.1.8
+ mlly: 1.8.0
+ pathe: 2.0.3
+
+ pkg-types@2.3.0:
+ dependencies:
+ confbox: 0.2.2
+ exsolve: 1.0.8
+ pathe: 2.0.3
+
postcss@8.5.3:
dependencies:
nanoid: 3.3.11
@@ -5698,10 +6319,14 @@ snapshots:
protocol-buffers-schema@3.6.0: {}
+ punycode@2.3.1: {}
+
quadbin@0.2.0:
dependencies:
'@mapbox/tile-cover': 3.0.1
+ quansync@0.2.11: {}
+
quick-lru@6.1.2: {}
quick-lru@7.0.0: {}
@@ -5788,6 +6413,8 @@ snapshots:
require-directory@2.1.1: {}
+ require-from-string@2.0.2: {}
+
resolve-from@4.0.0: {}
resolve-from@5.0.0: {}
@@ -5877,6 +6504,10 @@ snapshots:
semver@6.3.1: {}
+ semver@7.5.4:
+ dependencies:
+ lru-cache: 6.0.0
+
semver@7.7.3: {}
setimmediate@1.0.5: {}
@@ -5938,6 +6569,8 @@ snapshots:
duplexer2: 0.1.4
readable-stream: 2.3.8
+ string-argv@0.3.2: {}
+
string-width@4.2.3:
dependencies:
emoji-regex: 8.0.0
@@ -5972,6 +6605,8 @@ snapshots:
strip-json-comments@2.0.1: {}
+ strip-json-comments@3.1.1: {}
+
strnum@1.1.2: {}
stylis@4.2.0: {}
@@ -5990,6 +6625,10 @@ snapshots:
dependencies:
has-flag: 4.0.0
+ supports-color@8.1.1:
+ dependencies:
+ has-flag: 4.0.0
+
supports-hyperlinks@3.2.0:
dependencies:
has-flag: 4.0.0
@@ -6065,6 +6704,8 @@ snapshots:
typescript@5.8.2: {}
+ ufo@1.6.1: {}
+
uglify-js@3.19.3:
optional: true
@@ -6100,6 +6741,10 @@ snapshots:
escalade: 3.2.0
picocolors: 1.1.1
+ uri-js@4.4.1:
+ dependencies:
+ punycode: 2.3.1
+
url-join@5.0.0: {}
util-deprecate@1.0.2: {}
@@ -6111,6 +6756,25 @@ snapshots:
spdx-correct: 3.2.0
spdx-expression-parse: 3.0.1
+ vite-plugin-dts@4.5.4(@types/node@24.3.0)(rollup@4.40.1)(typescript@5.8.2)(vite@6.2.7(@types/node@24.3.0)):
+ dependencies:
+ '@microsoft/api-extractor': 7.55.2(@types/node@24.3.0)
+ '@rollup/pluginutils': 5.3.0(rollup@4.40.1)
+ '@volar/typescript': 2.4.26
+ '@vue/language-core': 2.2.0(typescript@5.8.2)
+ compare-versions: 6.1.1
+ debug: 4.4.0
+ kolorist: 1.8.0
+ local-pkg: 1.1.2
+ magic-string: 0.30.21
+ typescript: 5.8.2
+ optionalDependencies:
+ vite: 6.2.7(@types/node@24.3.0)
+ transitivePeerDependencies:
+ - '@types/node'
+ - rollup
+ - supports-color
+
vite@6.2.7(@types/node@24.3.0):
dependencies:
esbuild: 0.25.3
@@ -6120,6 +6784,8 @@ snapshots:
'@types/node': 24.3.0
fsevents: 2.3.3
+ vscode-uri@3.1.0: {}
+
web-streams-polyfill@3.3.3: {}
web-worker@1.2.0: {}
@@ -6159,6 +6825,8 @@ snapshots:
yallist@3.1.1: {}
+ yallist@4.0.0: {}
+
yaml@1.10.2: {}
yargs-parser@20.2.9: {}
diff --git a/pnpm-workspace.yaml b/pnpm-workspace.yaml
new file mode 100644
index 00000000..88f2d98a
--- /dev/null
+++ b/pnpm-workspace.yaml
@@ -0,0 +1,3 @@
+packages:
+ - 'viewer'
+ - 'sites/*'
\ No newline at end of file
diff --git a/python/src/vizarr/_widget.js b/python/src/vizarr/_widget.js
index 295e8441..69e23fc6 100644
--- a/python/src/vizarr/_widget.js
+++ b/python/src/vizarr/_widget.js
@@ -1,4 +1,4 @@
-import * as vizarr from "https://hms-dbmi.github.io/vizarr/index.js";
+import { createViewer } from "https://biongff.github.io/vizarr/index.js";
import debounce from "https://esm.sh/just-debounce-it@3";
/**
@@ -82,7 +82,7 @@ export default {
div.style.height = model.get("height");
});
}
- let viewer = await vizarr.createViewer(div);
+ let viewer = await createViewer(div);
{
model.on("change:view_state", () => {
viewer.setViewState(model.get("view_state"));
diff --git a/sites/app/.gitignore b/sites/app/.gitignore
new file mode 100644
index 00000000..1629b9f8
--- /dev/null
+++ b/sites/app/.gitignore
@@ -0,0 +1,8 @@
+node_modules
+.DS_Store
+.venv
+.ipynb_checkpoints
+dist/
+__pycache__
+
+/python/notebooks/*.zarr/
diff --git a/index.html b/sites/app/index.html
similarity index 91%
rename from index.html
rename to sites/app/index.html
index 4af20239..852dab0e 100644
--- a/index.html
+++ b/sites/app/index.html
@@ -13,7 +13,7 @@
-
+