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Pfam labels #254

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timkucera opened this issue Sep 8, 2023 · 1 comment
Open

Pfam labels #254

timkucera opened this issue Sep 8, 2023 · 1 comment

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@timkucera
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For pfam, there are some labels in the validation/test that are not present in the training set

@mahdip72
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mahdip72 commented Jan 15, 2024

This is my problem as well.
@timkucera I have a question, the paper says that family classification is a multi class task but some proteins have multiple Pfam annotations. For example. I have the following labels for one protein:

['PF02324', 'PF19127']

Could you explain to me which annotation should I consider? Or is it a multi label task actually.

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