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This is my problem as well. @timkucera I have a question, the paper says that family classification is a multi class task but some proteins have multiple Pfam annotations. For example. I have the following labels for one protein:
['PF02324', 'PF19127']
Could you explain to me which annotation should I consider? Or is it a multi label task actually.
For pfam, there are some labels in the validation/test that are not present in the training set
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