Input datasets: bnx, qcmap, rcamp, xmap

Hello! 

My first step of using AllRawDataRefining.jar was killed without error information reported. I doubt whether it is the input datasets problem. My bnx file is for whole genome while my xmap/qcmap/rcmap is for each chromosome. What's your datasets scope? What's your way to combine 24 chromosomes into one for xmap/qcmap/rcmap?
Thanks!

Best,
Linying