fix: Fix RegisterPilot for V9 with legacy pilots

Author: Robin-Van-de-Merghel

Pilot/pilotCommands.py

@@ -555,8 +555,11 @@ def execute(self):
         Deprecated with DIRAC V9 and DiracX."""
 
         if self.pp.jwt:
-            self.log.warn("Skipping module, normally it is already done via DiracX secret-exchange.")
-            return
+            if not self.pp.isLegacyLogging:
+                self.log.warn("Skipping module, normally it is already done via DiracX secret-exchange.")
+                return
+            
+            # If we're here, this is a legacy pilot with a diracX token embedded in it.
 
         if not self.pp.pilotReference:
             self.log.warn("Skipping module, no pilot reference found")