From 14dcba11c084b685191a0efece533e85f88414d8 Mon Sep 17 00:00:00 2001 From: Christoph Auer Date: Thu, 19 Sep 2024 15:25:37 +0200 Subject: [PATCH 1/9] Support tableformer model choice Signed-off-by: Christoph Auer --- docling/datamodel/base_models.py | 6 ++++++ docling/models/table_structure_model.py | 9 ++++++++- docling/pipeline/standard_model_pipeline.py | 1 + 3 files changed, 15 insertions(+), 1 deletion(-) diff --git a/docling/datamodel/base_models.py b/docling/datamodel/base_models.py index e9c51d69..d828beee 100644 --- a/docling/datamodel/base_models.py +++ b/docling/datamodel/base_models.py @@ -24,6 +24,11 @@ class DocInputType(str, Enum): STREAM = auto() +class TableFormerMode(str, Enum): + FAST = auto() + ACCURATE = auto() + + class CoordOrigin(str, Enum): TOPLEFT = auto() BOTTOMLEFT = auto() @@ -305,6 +310,7 @@ class TableStructureOptions(BaseModel): # are merged across table columns. # False: Let table structure model define the text cells, ignore PDF cells. ) + mode: TableFormerMode = TableFormerMode.FAST class PipelineOptions(BaseModel): diff --git a/docling/models/table_structure_model.py b/docling/models/table_structure_model.py index 388a0f9e..c2af5814 100644 --- a/docling/models/table_structure_model.py +++ b/docling/models/table_structure_model.py @@ -1,4 +1,5 @@ import copy +from pathlib import Path from typing import Iterable, List import numpy @@ -10,6 +11,7 @@ Page, TableCell, TableElement, + TableFormerMode, TableStructurePrediction, ) @@ -18,10 +20,15 @@ class TableStructureModel: def __init__(self, config): self.config = config self.do_cell_matching = config["do_cell_matching"] + self.mode = config["mode"] self.enabled = config["enabled"] if self.enabled: - artifacts_path = config["artifacts_path"] + artifacts_path: Path = config["artifacts_path"] + + if self.mode == TableFormerMode.ACCURATE: + artifacts_path = artifacts_path / "fat" + # Third Party import docling_ibm_models.tableformer.common as c diff --git a/docling/pipeline/standard_model_pipeline.py b/docling/pipeline/standard_model_pipeline.py index 1abf59a3..b43dc421 100644 --- a/docling/pipeline/standard_model_pipeline.py +++ b/docling/pipeline/standard_model_pipeline.py @@ -32,6 +32,7 @@ def __init__(self, artifacts_path: Path, pipeline_options: PipelineOptions): "artifacts_path": artifacts_path / StandardModelPipeline._table_model_path, "enabled": pipeline_options.do_table_structure, + "mode": pipeline_options.table_structure_options.mode, "do_cell_matching": pipeline_options.table_structure_options.do_cell_matching, } ), From d8163b0865f558ab4efff0f447311aaa71a9705f Mon Sep 17 00:00:00 2001 From: Christoph Auer Date: Thu, 19 Sep 2024 16:51:52 +0200 Subject: [PATCH 2/9] Update datamodel structure Signed-off-by: Christoph Auer --- Dockerfile | 4 ++-- docling/datamodel/base_models.py | 22 ------------------ docling/datamodel/document.py | 4 ++-- docling/datamodel/pipeline_options.py | 25 +++++++++++++++++++++ docling/document_converter.py | 2 +- docling/models/table_structure_model.py | 2 +- docling/pipeline/base_model_pipeline.py | 3 ++- docling/pipeline/standard_model_pipeline.py | 2 +- examples/batch_convert.py | 2 +- examples/custom_convert.py | 3 ++- 10 files changed, 37 insertions(+), 32 deletions(-) create mode 100644 docling/datamodel/pipeline_options.py diff --git a/Dockerfile b/Dockerfile index 0c05fda5..a7e9bc6f 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,7 +3,7 @@ FROM python:3.11-slim-bookworm ENV GIT_SSH_COMMAND="ssh -o StrictHostKeyChecking=no" RUN apt-get update \ - && apt-get install -y libgl1 libglib2.0-0 curl wget git \ + && apt-get install -y libgl1 libglib2.0-0 curl wget git vim procps \ && apt-get clean # This will install torch with *only* cpu support @@ -16,7 +16,7 @@ ENV TORCH_HOME=/tmp/ COPY examples/minimal.py /root/minimal.py -RUN python -c 'from deepsearch_glm.utils.load_pretrained_models import load_pretrained_nlp_models; load_pretrained_nlp_models(verbose=True);' +#RUN python -c 'from deepsearch_glm.utils.load_pretrained_models import load_pretrained_nlp_models; load_pretrained_nlp_models(verbose=True);' RUN python -c 'from docling.document_converter import DocumentConverter; artifacts_path = DocumentConverter.download_models_hf(force=True);' # On container environments, always set a thread budget to avoid undesired thread congestion. diff --git a/docling/datamodel/base_models.py b/docling/datamodel/base_models.py index d828beee..8e84ca4c 100644 --- a/docling/datamodel/base_models.py +++ b/docling/datamodel/base_models.py @@ -24,11 +24,6 @@ class DocInputType(str, Enum): STREAM = auto() -class TableFormerMode(str, Enum): - FAST = auto() - ACCURATE = auto() - - class CoordOrigin(str, Enum): TOPLEFT = auto() BOTTOMLEFT = auto() @@ -303,23 +298,6 @@ class DocumentStream(BaseModel): stream: BytesIO -class TableStructureOptions(BaseModel): - do_cell_matching: bool = ( - True - # True: Matches predictions back to PDF cells. Can break table output if PDF cells - # are merged across table columns. - # False: Let table structure model define the text cells, ignore PDF cells. - ) - mode: TableFormerMode = TableFormerMode.FAST - - -class PipelineOptions(BaseModel): - do_table_structure: bool = True # True: perform table structure extraction - do_ocr: bool = True # True: perform OCR, replace programmatic PDF text - - table_structure_options: TableStructureOptions = TableStructureOptions() - - class AssembleOptions(BaseModel): keep_page_images: Annotated[ bool, diff --git a/docling/datamodel/document.py b/docling/datamodel/document.py index b8177730..6669b5b6 100644 --- a/docling/datamodel/document.py +++ b/docling/datamodel/document.py @@ -4,14 +4,14 @@ from typing import ClassVar, Dict, Iterable, List, Optional, Tuple, Type, Union from docling_core.types import BaseCell, BaseText -from docling_core.types import BoundingBox as DsBoundingBox from docling_core.types import Document as DsDocument from docling_core.types import DocumentDescription as DsDocumentDescription from docling_core.types import FileInfoObject as DsFileInfoObject from docling_core.types import PageDimensions, PageReference, Prov, Ref from docling_core.types import Table as DsSchemaTable from docling_core.types import TableCell -from docling_core.types.doc.base import Figure +from docling_core.types.legacy.base import BoundingBox as DsBoundingBox +from docling_core.types.legacy.base import Figure from pydantic import BaseModel from typing_extensions import deprecated diff --git a/docling/datamodel/pipeline_options.py b/docling/datamodel/pipeline_options.py new file mode 100644 index 00000000..9ea7a77f --- /dev/null +++ b/docling/datamodel/pipeline_options.py @@ -0,0 +1,25 @@ +from enum import Enum, auto + +from pydantic import BaseModel + + +class TableFormerMode(str, Enum): + FAST = auto() + ACCURATE = auto() + + +class TableStructureOptions(BaseModel): + do_cell_matching: bool = ( + True + # True: Matches predictions back to PDF cells. Can break table output if PDF cells + # are merged across table columns. + # False: Let table structure model define the text cells, ignore PDF cells. + ) + mode: TableFormerMode = TableFormerMode.FAST + + +class PipelineOptions(BaseModel): + do_table_structure: bool = True # True: perform table structure extraction + do_ocr: bool = True # True: perform OCR, replace programmatic PDF text + + table_structure_options: TableStructureOptions = TableStructureOptions() diff --git a/docling/document_converter.py b/docling/document_converter.py index 542e174d..556a04a0 100644 --- a/docling/document_converter.py +++ b/docling/document_converter.py @@ -18,13 +18,13 @@ DoclingComponentType, ErrorItem, Page, - PipelineOptions, ) from docling.datamodel.document import ( ConversionResult, DocumentConversionInput, InputDocument, ) +from docling.datamodel.pipeline_options import PipelineOptions from docling.datamodel.settings import settings from docling.models.ds_glm_model import GlmModel from docling.models.page_assemble_model import PageAssembleModel diff --git a/docling/models/table_structure_model.py b/docling/models/table_structure_model.py index c2af5814..f722c13a 100644 --- a/docling/models/table_structure_model.py +++ b/docling/models/table_structure_model.py @@ -11,9 +11,9 @@ Page, TableCell, TableElement, - TableFormerMode, TableStructurePrediction, ) +from docling.datamodel.pipeline_options import TableFormerMode class TableStructureModel: diff --git a/docling/pipeline/base_model_pipeline.py b/docling/pipeline/base_model_pipeline.py index 4fdde951..3dcf6546 100644 --- a/docling/pipeline/base_model_pipeline.py +++ b/docling/pipeline/base_model_pipeline.py @@ -1,7 +1,8 @@ from pathlib import Path from typing import Callable, Iterable, List -from docling.datamodel.base_models import Page, PipelineOptions +from docling.datamodel.base_models import Page +from docling.datamodel.pipeline_options import PipelineOptions class BaseModelPipeline: diff --git a/docling/pipeline/standard_model_pipeline.py b/docling/pipeline/standard_model_pipeline.py index b43dc421..3532fea6 100644 --- a/docling/pipeline/standard_model_pipeline.py +++ b/docling/pipeline/standard_model_pipeline.py @@ -1,6 +1,6 @@ from pathlib import Path -from docling.datamodel.base_models import PipelineOptions +from docling.datamodel.pipeline_options import PipelineOptions from docling.models.easyocr_model import EasyOcrModel from docling.models.layout_model import LayoutModel from docling.models.table_structure_model import TableStructureModel diff --git a/examples/batch_convert.py b/examples/batch_convert.py index 4491b364..eb943a7a 100644 --- a/examples/batch_convert.py +++ b/examples/batch_convert.py @@ -4,7 +4,7 @@ from pathlib import Path from typing import Iterable -from docling.datamodel.base_models import ConversionStatus, PipelineOptions +from docling.datamodel.base_models import ConversionStatus from docling.datamodel.document import ConversionResult, DocumentConversionInput from docling.document_converter import DocumentConverter diff --git a/examples/custom_convert.py b/examples/custom_convert.py index 6f0b8f8f..2c0fac7a 100644 --- a/examples/custom_convert.py +++ b/examples/custom_convert.py @@ -6,8 +6,9 @@ from docling.backend.docling_parse_backend import DoclingParseDocumentBackend from docling.backend.pypdfium2_backend import PyPdfiumDocumentBackend -from docling.datamodel.base_models import ConversionStatus, PipelineOptions +from docling.datamodel.base_models import ConversionStatus from docling.datamodel.document import ConversionResult, DocumentConversionInput +from docling.datamodel.pipeline_options import PipelineOptions from docling.document_converter import DocumentConverter _log = logging.getLogger(__name__) From 6ea6f2951697e00363b4921023e537b844159ed0 Mon Sep 17 00:00:00 2001 From: Christoph Auer Date: Thu, 19 Sep 2024 16:59:16 +0200 Subject: [PATCH 3/9] Update docs Signed-off-by: Christoph Auer --- README.md | 16 ++++++++++++++++ examples/custom_convert.py | 4 ++-- 2 files changed, 18 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 0cb0c95c..fa20456d 100644 --- a/README.md +++ b/README.md @@ -110,6 +110,8 @@ This can improve output quality if you find that multiple columns in extracted t ```python +from docling.datamodel.pipeline_options import PipelineOptions + pipeline_options = PipelineOptions(do_table_structure=True) pipeline_options.table_structure_options.do_cell_matching = False # uses text cells predicted from table structure model @@ -119,6 +121,20 @@ doc_converter = DocumentConverter( ) ``` +Since docling 1.14.0: You can control which TableFormer mode you want to use. Choose between `TableFormerMode.FAST` (default) and `TableFormerMode.ACCURATE` (better, but slower) to receive better quality with difficult table structures. + +```python +from docling.datamodel.pipeline_options import PipelineOptions, TableFormerMode + +pipeline_options = PipelineOptions(do_table_structure=True) +pipeline_options.table_structure_options.mode = TableFormerMode.ACCURATE # use more accurate TableFormer model + +doc_converter = DocumentConverter( + artifacts_path=artifacts_path, + pipeline_options=pipeline_options, +) +``` + ### Impose limits on the document size You can limit the file size and number of pages which should be allowed to process per document: diff --git a/examples/custom_convert.py b/examples/custom_convert.py index 2c0fac7a..b561d9d2 100644 --- a/examples/custom_convert.py +++ b/examples/custom_convert.py @@ -83,9 +83,9 @@ def main(): # PyPdfium with OCR # ----------------- # pipeline_options = PipelineOptions() - # pipeline_options.do_ocr=False + # pipeline_options.do_ocr=True # pipeline_options.do_table_structure=True - # pipeline_options.table_structure_options.do_cell_matching = True + # pipeline_options.table_structure_options.do_cell_matching = False # doc_converter = DocumentConverter( # pipeline_options=pipeline_options, From f6edd926fc12d8f91f713dfaab9245fd4b493d23 Mon Sep 17 00:00:00 2001 From: Christoph Auer Date: Thu, 19 Sep 2024 17:00:05 +0200 Subject: [PATCH 4/9] Cleanup Signed-off-by: Christoph Auer --- Dockerfile | 2 +- docling/cli/main.py | 3 ++- docling/datamodel/document.py | 4 ++-- tests/test_e2e_conversion.py | 3 +-- tests/test_interfaces.py | 3 ++- 5 files changed, 8 insertions(+), 7 deletions(-) diff --git a/Dockerfile b/Dockerfile index a7e9bc6f..298291e9 100644 --- a/Dockerfile +++ b/Dockerfile @@ -16,7 +16,7 @@ ENV TORCH_HOME=/tmp/ COPY examples/minimal.py /root/minimal.py -#RUN python -c 'from deepsearch_glm.utils.load_pretrained_models import load_pretrained_nlp_models; load_pretrained_nlp_models(verbose=True);' +RUN python -c 'from deepsearch_glm.utils.load_pretrained_models import load_pretrained_nlp_models; load_pretrained_nlp_models(verbose=True);' RUN python -c 'from docling.document_converter import DocumentConverter; artifacts_path = DocumentConverter.download_models_hf(force=True);' # On container environments, always set a thread budget to avoid undesired thread congestion. diff --git a/docling/cli/main.py b/docling/cli/main.py index c8a8f3ac..ab541b3b 100644 --- a/docling/cli/main.py +++ b/docling/cli/main.py @@ -12,8 +12,9 @@ from docling.backend.docling_parse_backend import DoclingParseDocumentBackend from docling.backend.pypdfium2_backend import PyPdfiumDocumentBackend -from docling.datamodel.base_models import ConversionStatus, PipelineOptions +from docling.datamodel.base_models import ConversionStatus from docling.datamodel.document import ConversionResult, DocumentConversionInput +from docling.datamodel.pipeline_options import PipelineOptions from docling.document_converter import DocumentConverter warnings.filterwarnings(action="ignore", category=UserWarning, module="pydantic|torch") diff --git a/docling/datamodel/document.py b/docling/datamodel/document.py index 6669b5b6..19fc40cd 100644 --- a/docling/datamodel/document.py +++ b/docling/datamodel/document.py @@ -10,8 +10,8 @@ from docling_core.types import PageDimensions, PageReference, Prov, Ref from docling_core.types import Table as DsSchemaTable from docling_core.types import TableCell -from docling_core.types.legacy.base import BoundingBox as DsBoundingBox -from docling_core.types.legacy.base import Figure +from docling_core.types.doc.base import BoundingBox as DsBoundingBox +from docling_core.types.doc.base import Figure from pydantic import BaseModel from typing_extensions import deprecated diff --git a/tests/test_e2e_conversion.py b/tests/test_e2e_conversion.py index a4ecff16..c37c027a 100644 --- a/tests/test_e2e_conversion.py +++ b/tests/test_e2e_conversion.py @@ -1,9 +1,8 @@ from pathlib import Path from docling.backend.docling_parse_backend import DoclingParseDocumentBackend -from docling.backend.pypdfium2_backend import PyPdfiumDocumentBackend -from docling.datamodel.base_models import PipelineOptions from docling.datamodel.document import ConversionResult +from docling.datamodel.pipeline_options import PipelineOptions from docling.document_converter import DocumentConverter from .verify_utils import verify_conversion_result diff --git a/tests/test_interfaces.py b/tests/test_interfaces.py index 9475bcef..0572c50e 100644 --- a/tests/test_interfaces.py +++ b/tests/test_interfaces.py @@ -5,8 +5,9 @@ from docling.backend.docling_parse_backend import DoclingParseDocumentBackend from docling.backend.pypdfium2_backend import PyPdfiumDocumentBackend -from docling.datamodel.base_models import DocumentStream, PipelineOptions +from docling.datamodel.base_models import DocumentStream from docling.datamodel.document import ConversionResult, DocumentConversionInput +from docling.datamodel.pipeline_options import PipelineOptions from docling.document_converter import DocumentConverter from .verify_utils import verify_conversion_result From 5369c55aca6d0926bca609e0d8c1d25b58fa7570 Mon Sep 17 00:00:00 2001 From: Christoph Auer Date: Thu, 19 Sep 2024 18:41:08 +0200 Subject: [PATCH 5/9] Add test unit for table options Signed-off-by: Christoph Auer --- tests/test_options.py | 42 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) create mode 100644 tests/test_options.py diff --git a/tests/test_options.py b/tests/test_options.py new file mode 100644 index 00000000..dfd8cf83 --- /dev/null +++ b/tests/test_options.py @@ -0,0 +1,42 @@ +from pathlib import Path + +import pytest + +from docling.backend.docling_parse_backend import DoclingParseDocumentBackend +from docling.datamodel.base_models import ConversionStatus +from docling.datamodel.document import ConversionResult +from docling.datamodel.pipeline_options import PipelineOptions, TableFormerMode +from docling.document_converter import DocumentConverter + +from .verify_utils import verify_conversion_result + + +@pytest.fixture +def test_doc_path(): + return Path("./tests/data/2206.01062.pdf") + + +def get_converters_with_table_options(): + for cell_matching in [True, False]: + for mode in [TableFormerMode.FAST, TableFormerMode.ACCURATE]: + pipeline_options = PipelineOptions() + pipeline_options.do_ocr = False + pipeline_options.do_table_structure = True + pipeline_options.table_structure_options.do_cell_matching = cell_matching + pipeline_options.table_structure_options.mode = mode + + converter = DocumentConverter( + pipeline_options=pipeline_options, + pdf_backend=DoclingParseDocumentBackend, + ) + + yield converter + + +def test_e2e_conversions(test_doc_path): + for converter in get_converters_with_table_options(): + print(f"converting {test_doc_path}") + + doc_result: ConversionResult = converter.convert_single(test_doc_path) + + assert doc_result.status == ConversionStatus.SUCCESS From 5843f1ee1febfdd42f70bdba4f31db0fcf55c231 Mon Sep 17 00:00:00 2001 From: Christoph Auer Date: Thu, 26 Sep 2024 13:46:41 +0200 Subject: [PATCH 6/9] Ensure import backwards-compatibility for PipelineOptions Signed-off-by: Christoph Auer --- docling/datamodel/base_models.py | 4 + examples/custom_convert.py | 3 +- poetry.lock | 1166 +++++++++++++++--------------- 3 files changed, 607 insertions(+), 566 deletions(-) diff --git a/docling/datamodel/base_models.py b/docling/datamodel/base_models.py index 8e84ca4c..f18dbd7a 100644 --- a/docling/datamodel/base_models.py +++ b/docling/datamodel/base_models.py @@ -9,6 +9,10 @@ from typing_extensions import Self from docling.backend.abstract_backend import PdfPageBackend +from docling.datamodel.pipeline_options import ( # Must be imported here for backward compatibility. + PipelineOptions, + TableStructureOptions, +) class ConversionStatus(str, Enum): diff --git a/examples/custom_convert.py b/examples/custom_convert.py index b561d9d2..958583e9 100644 --- a/examples/custom_convert.py +++ b/examples/custom_convert.py @@ -6,9 +6,8 @@ from docling.backend.docling_parse_backend import DoclingParseDocumentBackend from docling.backend.pypdfium2_backend import PyPdfiumDocumentBackend -from docling.datamodel.base_models import ConversionStatus +from docling.datamodel.base_models import ConversionStatus, PipelineOptions from docling.datamodel.document import ConversionResult, DocumentConversionInput -from docling.datamodel.pipeline_options import PipelineOptions from docling.document_converter import DocumentConverter _log = logging.getLogger(__name__) diff --git a/poetry.lock b/poetry.lock index 9db17fa9..cedf0132 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,102 +13,102 @@ files = [ [[package]] name = "aiohttp" -version = "3.10.5" +version = "3.10.6" description = "Async http client/server framework (asyncio)" optional = false 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13:48:30 +0200 Subject: [PATCH 7/9] Update README Signed-off-by: Christoph Auer --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index c176962c..e3907dbd 100644 --- a/README.md +++ b/README.md @@ -170,7 +170,7 @@ doc_converter = DocumentConverter( ) ``` -Since docling 1.14.0: You can control which TableFormer mode you want to use. Choose between `TableFormerMode.FAST` (default) and `TableFormerMode.ACCURATE` (better, but slower) to receive better quality with difficult table structures. +Since docling 1.16.0: You can control which TableFormer mode you want to use. Choose between `TableFormerMode.FAST` (default) and `TableFormerMode.ACCURATE` (better, but slower) to receive better quality with difficult table structures. ```python from docling.datamodel.pipeline_options import PipelineOptions, TableFormerMode From d4283ccbd48e195e110364107e6c562d8733cf74 Mon Sep 17 00:00:00 2001 From: Christoph Auer <60343111+cau-git@users.noreply.github.com> Date: Thu, 26 Sep 2024 17:44:48 +0200 Subject: [PATCH 8/9] Adjust parameters on custom_convert Signed-off-by: Christoph Auer <60343111+cau-git@users.noreply.github.com> --- examples/custom_convert.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/examples/custom_convert.py b/examples/custom_convert.py index 958583e9..9c84d8dd 100644 --- a/examples/custom_convert.py +++ b/examples/custom_convert.py @@ -84,7 +84,7 @@ def main(): # pipeline_options = PipelineOptions() # pipeline_options.do_ocr=True # pipeline_options.do_table_structure=True - # pipeline_options.table_structure_options.do_cell_matching = False + # pipeline_options.table_structure_options.do_cell_matching = True # doc_converter = DocumentConverter( # pipeline_options=pipeline_options, From ba1001d23c2ccecfa05b6dd9fad21396c0621866 Mon Sep 17 00:00:00 2001 From: Christoph Auer <60343111+cau-git@users.noreply.github.com> Date: Thu, 26 Sep 2024 17:45:17 +0200 Subject: [PATCH 9/9] Update Dockerfile Signed-off-by: Christoph Auer <60343111+cau-git@users.noreply.github.com> --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 298291e9..dd87b0fb 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,7 +3,7 @@ FROM python:3.11-slim-bookworm ENV GIT_SSH_COMMAND="ssh -o StrictHostKeyChecking=no" RUN apt-get update \ - && apt-get install -y libgl1 libglib2.0-0 curl wget git vim procps \ + && apt-get install -y libgl1 libglib2.0-0 curl wget git procps \ && apt-get clean # This will install torch with *only* cpu support