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Are bin_compare and bin_qa_plot functions still working? #359
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Hey, |
Oh Thank you! Do you know of any alternative tools or command for same? |
If you have a lot of bins maybe you should skip the figure.... because with too much bins it's a bit complicated. Or you can check the code of bin_qa_plot to get inspired to lunch it on your own. |
Thank you @ElsaMMendes |
Hello,
I was trying to compare bins across different algorithms and came across this functions bin_compare and bin_qa_plot under checkm, but both seem to no longer work? is it removed? or am i doing something wrong.
### checkm bin_compare
usage: checkm
{data,tree,tree_qa,lineage_set,taxon_list,taxon_set,analyze,qa,lineage_wf,taxonomy_wf,gc_plot,coding_plot,tetra_plot,dist_plot,gc_bias_plot,nx_plot,len_hist,marker_plot,unbinned,coverage,tetra,profile,ssu_finder,merge,outliers,modify,unique,test}
...
checkm: error: argument subparser_name: invalid choice: 'bin_compare' (choose from 'data', 'tree', 'tree_qa', 'lineage_set', 'taxon_list', 'taxon_set', 'analyze', 'qa', 'lineage_wf', 'taxonomy_wf', 'gc_plot', 'coding_plot', 'tetra_plot', 'dist_plot', 'gc_bias_plot', 'nx_plot', 'len_hist', 'marker_plot', 'unbinned', 'coverage', 'tetra', 'profile', 'ssu_finder', 'merge', 'outliers', 'modify', 'unique', 'test')
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