Merge remote-tracking branch 'upstream/main' into contribution-to-issue676

* upstream/main: (227 commits)
  Adapt welcome message (JabRef#14487)
  Add message when closing a PR
  Add collection of "all" AI features (JabRef#14438)
  Trigger conflict-detection on push on main (JabRef#14479)
  Add unassigned_comment on comment issue
  New Crowdin updates (JabRef#14483)
  Tweak labels also at merge conflicts
  Merge --remove-label and --add-label
  Remove SmartGroup and refactor groups factory (JabRef#14398)
  more debug
  Support html when parsing arXiv identifiers (JabRef#14474)
  Add debug and fix run
  Remove "ready-for-review" if changes are required
  Have label move as last step of comment
  Add pr number to output
  change files to file(s) (JabRef#14465)
  Add CDS archive (JabRef#14476)
  Fix adapting labels (JabRef#14477)
  Chore(deps): Bump jablib/src/main/resources/csl-styles (JabRef#14468)
  Chore(deps): Bump net.bytebuddy:byte-buddy in /versions (JabRef#14472)
  ...

Author: Siedlerchr

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -43,7 +43,7 @@ body:
 
   - type: checkboxes
     attributes:
-      label: Checked with the latest development build (copy version output from About dialog)
+      label: Checked with the [latest development build](https://builds.jabref.org/main/) (copy version output from About dialog)
       description: |
         Please always test if the bug is still reproducible in the latest development version. We are constantly improving JabRef and some bugs may already be fixed. If you already use a development version, ensure that you use the latest one.
         You can download the latest development build at: https://builds.jabref.org/main/ . **Please make a backup of your library before you try out this version.**

.github/PULL_REQUEST_TEMPLATE.md

@@ -1,7 +1,7 @@
 Closes _____
 <!-- LINK THE ISSUE WITH THE "Closes" KEYWORD. Example: Closes https://github.com/JabRef/jabref/issues/13109 OR Closes #13109 -->
 
-<!-- In about one to three sentences, describe the changes you have made: what, where, why, ... (REPLACE THIS LINE) -->
+<!-- In about one to three sentences, describe the changes you have made: what, where, why, ... Summarize changes and DO NOT list modified classes one-by-one. (REPLACE THIS LINE) -->
 
 <!-- NOTE: If your work is not yet complete, please open a draft pull request. In that case, outline your intended next steps. Do you need feedback? Will you continue in parallel? ... -->
 

.github/dependabot.yml

@@ -9,8 +9,7 @@ updates:
     schedule:
       interval: weekly
       day: sunday
-    labels:
-      - "dependencies"
+    labels: [ ]
     ignore:
       - dependency-name: com.microsoft.azure:applicationinsights-core
         versions:
@@ -23,10 +22,17 @@ updates:
     schedule:
       interval: weekly
       day: sunday
-    labels:
-      - "dependencies"
+    labels: [ ]
   - package-ecosystem: "gitsubmodule"
     directory: "/"
     schedule:
       interval: weekly
       day: sunday
+    labels: [ ]
+  - package-ecosystem: "maven"
+    directories:
+      - "jablib-examples/maven3/doi-to-bibtex"
+    schedule:
+      interval: weekly
+      day: sunday
+    labels: [ ]

.github/ghprcomment.yml

@@ -148,7 +148,7 @@
 
     In future, **please avoid that**. For now, you can continue working.
 - jobName: 'Conflicts with target branch'
-  workflowName: 'On PR opened/updated'
+  workflowName: 'On PR opened/updated (check)'
   message: >
     Your pull request conflicts with the target branch.
 
@@ -179,19 +179,19 @@
     Give it a read, and you’ll discover the ancient wisdom of assigning issues to yourself. Trust me, it’s worth it. 🚀
 
 - jobName: 'PR title must not contain "issue <number>"'
-  workflowName: 'PR Format'
+  workflowName: 'Check PR Format'
   always: true
   message: >
     The title of the pull request must not start with "Fix for issue xyz".
     Please use a concise one-line summary that explains what the fix or change actually does.
     Example of a good title: "Prevent crash when importing malformed BibTeX entries".
 - jobName: 'Mandatory Checks present'
-  workflowName: 'PR Format'
+  workflowName: 'Check PR Format'
   always: true
   message: >
     You have removed the "Mandatory Checks" section from your pull request description. Please adhere to our [pull request template](https://github.com/JabRef/jabref/blob/main/.github/PULL_REQUEST_TEMPLATE.md?plain=1#L10).
 - jobName: 'PR checklist OK'
-  workflowName: 'PR Format'
+  workflowName: 'Check PR Format'
   always: true
   message: >
     Note that your PR will not be reviewed/accepted until you have gone through the mandatory checks in the description and marked each of them them exactly in the format of `[x]` (done), `[ ]` (not done yet) or `[/]` (not applicable).

.github/workflows/binaries.yml

@@ -20,7 +20,7 @@ jobs:
     if: github.repository == 'JabRef/jabref'
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           show-progress: 'false'
       - name: Run linkspector

.github/workflows/check-links.yml

@@ -22,7 +22,7 @@ jobs:
         with:
           ignore_sha: true
           workflow_id: 160969125
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: "Check for 'dev: binaries' label"
         id: check_label
         run: |
@@ -36,7 +36,7 @@ jobs:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       - name: Delete folder on builds.jabref.org
         if: steps.check_label.outputs.has_label_binaries == 'yes'
-        uses: appleboy/[email protected].2
+        uses: appleboy/[email protected].4
         with:
           script: rm -rf /var/www/builds.jabref.org/www/pull/${{ github.event.pull_request.number }} || true
           host: build-upload.jabref.org

.github/workflows/cleanup-pr.yml

@@ -53,7 +53,7 @@ jobs:
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v3
       - name: Fetch all history for all tags and branches
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: 'true'

.github/workflows/dockerimages.yml

@@ -51,7 +51,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0
           show-progress: 'false'

.github/workflows/gource.yml

@@ -27,7 +27,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out code
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Install TeX Live
         uses: zauguin/install-texlive@v4
         with:
@@ -80,7 +80,7 @@ jobs:
             bibengine: biber
     steps:
       - name: Check out code
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Install TeX Live
         uses: zauguin/install-texlive@v4