Sample_selection

Author: Evelyn92

Jia_sample_selection/LHA_ODS_NIPMAM_ALL.3d.3d renamed to Jia_sample_selection/LHA_ODS_NIPMAM_ALL.3d

@@ -3,15 +3,15 @@
 cd D:\forClone\Hiwi\Microgel\Jia_sample_selection
 %1) read the entire slide: (the three .3d files contain the data from the Nano Letters paper)
 cloud_add{1} = 'LHA_FOCTS_NIPMAM_ALL.3d';
-cloud_add{2} = 'LHA_ODS_NIPMAM_ALL.3d.3d';
+cloud_add{2} = 'LHA_ODS_NIPMAM_ALL.3d';
 cloud_add{3} = 'LHA_PEG_NIPMAM_ALL.3d';
 
 save_add{1} = './dataset/focts/'; 
 save_add{2} = './dataset/ods/';
 save_add{3} = './dataset/peg/';
 
 
-for id_mg = 2:2
+for id_mg = 1:3
 cloud = read_point_cloud(cloud_add{id_mg});    
 %2) detect individual microgels:
 [centers_x, centers_y, x_range, y_range] = detect_gels(cloud, 0);

Jia_sample_selection/dataset/FOCTS-loc-3.txt

@@ -0,0 +1,48 @@
+clear all;
+clc;
+cd D:\forClone\Hiwi\Microgel\Jia_sample_selection
+className{1} = 'FOCTS';
+className{2} = 'ODS';
+className{3} = 'PEG';
+save_add{1} = './dataset/focts/tr/'; 
+save_add{2} = './dataset/ods/tr/';
+save_add{3} = './dataset/peg/tr/';
+
+className = className{3};
+index = 7;
+
+if strcmp(className, 'FOCTS')
+    max_index = 7;
+    save_add_path = save_add{1};
+    h_bias = 200;
+    d_max = 600;
+    h_max = 400;
+elseif strcmp(className, 'ODS')
+    max_index = 10;
+    save_add_path = save_add{2};
+    h_bias = 400;
+    d_max = 600;
+    h_max = 800;
+else 
+    max_index = 8;
+    save_add_path = save_add{3};
+    h_bias = 400;
+    d_max = 420;
+    h_max = 800;
+end
+
+
+add = strcat(save_add_path,string(index),'.ply');
+ 
+test_local = pcread(add);
+all_localiz  = test_local.Location();
+zvec=all_localiz(:,3);
+xcoord=all_localiz(:,1);
+deltax = xcoord-median(xcoord);
+ycoord=all_localiz(:,2);
+deltay = ycoord-median(ycoord);
+%data = all_localiz;
+data = [deltax, deltay, zvec];
+
+save_path = strcat(save_add_path, 'loc-', int2str(index),'.txt');
+writematrix(data, save_path)