chore: rename ase -> specific shape

Author: VsevolodX

other/materials_designer/Introduction.ipynb

@@ -29,7 +29,7 @@
     "### 1.4. 0D Structures.\n",
     "#### [1.4.1. Spherical Cluster. Create a spherical cluster from a bulk material.](create_cluster_sphere.ipynb)\n",
     "#### [1.4.2. Custom Shape Cluster. Create a cluster by cutting it out of a slab.](create_cluster_custom_shape.ipynb)\n",
-    "#### [1.4.3. ASE-provided Cluster. Create a cluster by building up a specific shape.](create_cluster_ase.ipynb)\n",
+    "#### [1.4.3. Specific Shape Cluster. Create a cluster by building up a specific shape.](create_cluster_specific_shape.ipynb)\n",
     "#### [1.4.4. Box-cutout. Create a slab with a box cutout](create_cutout_box.ipynb)\n",
     "#### [1.4.5. Custom Shape Cutout. Create a slab with a custom shape cutout.](create_cutout_custom_shape.ipynb)\n",
     "\n",

other/materials_designer/create_cluster_custom_shape.ipynb

@@ -132,6 +132,7 @@
     "                return False\n",
     "        return True\n",
     "    \n",
+    "    \n",
     "condition = CustomCoordinateCondition(radius=RADIUS).condition"
    ],
    "metadata": {
@@ -167,61 +168,50 @@
   {
    "cell_type": "markdown",
    "source": [
-    "### 1.4. Create a slab of sufficient size"
+    "## 2. Create the Target Material\n",
+    "### 2.1. Set the cluster configuration\n"
    ],
    "metadata": {
     "collapsed": false
    },
-   "id": "a132fe0ef8bbf0d0"
+   "id": "690241d87e7bbbe0"
   },
   {
    "cell_type": "code",
    "outputs": [],
    "source": [
-    "from mat3ra.made.tools.build.supercell import create_supercell\n",
-    "from mat3ra.made.tools.build.slab import create_slab, SlabConfiguration\n",
-    "from utils.visualize import visualize_materials as visualize\n",
-    "\n",
-    "slab_config = SlabConfiguration(\n",
-    "    bulk=materials[0],\n",
-    "    miller_indices=Z_ORIENTATION,\n",
-    "    thickness=SUPERCELL_SIZE,\n",
-    "    vacuum=0,\n",
-    "    use_orthogonal_z=True,\n",
-    "    xy_supercell_matrix=[[SUPERCELL_SIZE, 0], [0, SUPERCELL_SIZE]],\n",
-    ")\n",
+    "from mat3ra.made.tools.build.nanoparticle import ASEBasedNanoparticleConfiguration\n",
+    "from mat3ra.made.tools.build.nanoparticle.enums import ASENanoparticleShapesEnum\n",
     "\n",
-    "slab = create_slab(slab_config)\n",
     "\n",
-    "visualize([{\"material\": slab, \"title\": \"Original material\"}])\n",
-    "visualize([{\"material\": slab, \"title\": \"Original material\"}], rotation=\"-90x\")"
+    "config = ASEBasedNanoparticleConfiguration(\n",
+    "    material=materials[0],\n",
+    "    supercell_size=SUPERCELL_SIZE,\n",
+    "    vacuum=VACUUM,\n",
+    "    z_orientation=Z_ORIENTATION,\n",
+    "    coordinate_condition=condition\n",
+    ")\n"
    ],
    "metadata": {
     "collapsed": false
    },
-   "id": "7fcb1e02e84c5f35",
-   "execution_count": null
+   "id": "8fbe260fa14db47a"
   },
   {
    "cell_type": "markdown",
    "source": [
-    "## 2. Create the Target Material\n",
-    "### 2.1. Create spherical cluster\n"
+    "#### 2.2. Create the cluster"
    ],
    "metadata": {
     "collapsed": false
    },
-   "id": "690241d87e7bbbe0"
+   "id": "10799f3efede924d"
   },
   {
    "cell_type": "code",
    "outputs": [],
    "source": [
-    "from mat3ra.made.tools.modify import  add_vacuum, add_vacuum_sides, filter_by_condition_on_coordinates\n",
-    "\n",
-    "cluster = filter_by_condition_on_coordinates(slab, condition)\n",
-    "cluster = add_vacuum(cluster, VACUUM, to_bottom=True, on_top=True)\n",
-    "cluster = add_vacuum_sides(cluster, VACUUM, on_x=True, on_y=True)"
+    "from mat3ra.made.tools.build.nanoparticle import ASEBasedNanoparticleBuilder"
    ],
    "metadata": {
     "collapsed": false