Merge pull request #153 from Exabyte-io/hotfix/add-annotated-types

update: move annotaded types to common

Author: VsevolodX

config.yml

@@ -8,6 +8,7 @@ default:
   packages_common:
     - pandas==1.5.3
     - ase==3.22.1
+    - ipywidgets
   packages_python:
     - pymatgen==2024.4.13
   packages_pyodide:
@@ -18,6 +19,7 @@ default:
     - emfs:/drive/api-examples/packages/ruamel.yaml-0.17.32-py3-none-any.whl
     - emfs:/drive/api-examples/packages/pydantic_core-2.18.2-py3-none-any.whl
     - emfs:/drive/api-examples/packages/pydantic-2.7.1-py3-none-any.whl
+    - annotated_types>=0.6.0
     - networkx==3.2.1
     - monty==2023.11.3
     - scipy==1.11.2
@@ -29,12 +31,10 @@ default:
 notebooks:
   - name: create_interface_with_min_strain_zsl.ipynb
     packages_common:
-      - ipywidgets
       - plotly==5.18
       - nbformat>=4.2.0
     packages_python:
     packages_pyodide:
-      - annotated_types>=0.6.0
       - mat3ra-esse
       - mat3ra-made
   - name: import_material_from_jarvis_db_entry.ipynb
@@ -60,9 +60,7 @@ notebooks:
       - emfs:/drive/api-examples/packages/watchdog-2.3.1-py3-none-any.whl
   - name: create_point_defect.ipynb
     packages_common:
-      - ipywidgets
     packages_python:
     packages_pyodide:
-      - annotated_types>=0.6.0
       - mat3ra-esse
       - mat3ra-made

other/materials_designer/specific_examples/defect_creation_island.ipynb

@@ -266,10 +266,9 @@
    "cell_type": "code",
    "outputs": [],
    "source": [
-    "from utils.jupyterlite import write_materials_to_folder, download_content_to_file\n",
+    "from utils.jupyterlite import write_materials_to_folder\n",
     "\n",
-    "write_materials_to_folder(slab_with_island, \"./downloads\")\n",
-    "download_content_to_file(slab_with_island.to_json(), \"slab_with_island.json\")"
+    "write_materials_to_folder(slab_with_island, \"./downloads\")"
    ],
    "metadata": {
     "collapsed": false

other/materials_designer/specific_examples/defect_creation_point_substitution_graphene.ipynb

@@ -258,10 +258,9 @@
    "cell_type": "code",
    "outputs": [],
    "source": [
-    "from utils.jupyterlite import write_materials_to_folder, download_content_to_file\n",
+    "from utils.jupyterlite import write_materials_to_folder\n",
     "material_with_defect.name = \"N-doped Graphene\"\n",
-    "write_materials_to_folder([material_with_defect], \"../uploads\")\n",
-    "download_content_to_file(material_with_defect.to_json(), \"N-doped_Graphene.json\")"
+    "write_materials_to_folder([material_with_defect], \"./downloads\")"
    ],
    "metadata": {
     "collapsed": false