From db0dbc402b7a3af624452297f67054182b3e1ffe Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 15 Jul 2024 12:18:57 -0400 Subject: [PATCH 001/337] feat: Temporary workaround to fix an ephemeral vite bug --- package-lock.json | 5106 +++++++++++++++++++++++++++++---------------- package.json | 39 +- vite.config.ts | 1 + 3 files changed, 3363 insertions(+), 1783 deletions(-) diff --git a/package-lock.json b/package-lock.json index 9af9e4151..915fb9753 100644 --- a/package-lock.json +++ b/package-lock.json @@ -8,21 +8,21 @@ "name": "chrisui", "version": "0.0.0", "dependencies": { - "@cornerstonejs/core": "^1.81.2", - "@cornerstonejs/dicom-image-loader": "^1.81.2", - "@cornerstonejs/streaming-image-volume-loader": "^1.81.2", - "@cornerstonejs/tools": "^1.81.2", + "@cornerstonejs/core": "^1.82.4", + "@cornerstonejs/dicom-image-loader": "^1.82.4", + "@cornerstonejs/streaming-image-volume-loader": "^1.82.4", + "@cornerstonejs/tools": "^1.82.4", "@fnndsc/chrisapi": "^1.15.0", 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"^7.0.4", + "libnpmpublish": "^9.0.9", + "libnpmsearch": "^7.0.6", + "libnpmteam": "^6.0.5", + "libnpmversion": "^6.0.3", + "make-fetch-happen": "^13.0.1", + "minimatch": "^9.0.5", + "minipass": "^7.1.1", "minipass-pipeline": "^1.2.4", "ms": "^2.1.2", "node-gyp": "^10.1.0", - "nopt": "^7.2.0", - "normalize-package-data": "^6.0.0", + "nopt": "^7.2.1", + "normalize-package-data": "^6.0.2", "npm-audit-report": "^5.0.0", "npm-install-checks": "^6.3.0", "npm-package-arg": "^11.0.2", - "npm-pick-manifest": "^9.0.0", - "npm-profile": "^9.0.1", - "npm-registry-fetch": "^16.2.1", - "npm-user-validate": "^2.0.0", + "npm-pick-manifest": "^9.1.0", + "npm-profile": "^10.0.0", + "npm-registry-fetch": "^17.1.0", + "npm-user-validate": "^2.0.1", "p-map": "^4.0.0", - "pacote": "^18.0.2", + "pacote": "^18.0.6", "parse-conflict-json": "^3.0.1", "proc-log": "^4.2.0", - "proggy": "^2.0.0", "qrcode-terminal": "^0.12.0", "read": "^3.0.1", - "semver": "^7.6.0", + "semver": "^7.6.2", "spdx-expression-parse": "^4.0.0", - "ssri": "^10.0.5", + "ssri": "^10.0.6", "supports-color": "^9.4.0", "tar": "^6.2.1", "text-table": "~0.2.0", "tiny-relative-date": "^1.3.0", "treeverse": "^3.0.0", - "validate-npm-package-name": "^5.0.0", + "validate-npm-package-name": "^5.0.1", "which": "^4.0.0", "write-file-atomic": "^5.0.1" }, @@ -6297,10 +7529,11 @@ } }, "node_modules/npm-run-path": { - "version": "5.2.0", - "resolved": "https://registry.npmjs.org/npm-run-path/-/npm-run-path-5.2.0.tgz", - "integrity": "sha512-W4/tgAXFqFA0iL7fk0+uQ3g7wkL8xJmx3XdK0VGb4cHW//eZTtKGvFBBoRKVTpY7n6ze4NL9ly7rgXcHufqXKg==", + "version": "5.3.0", + "resolved": "https://registry.npmjs.org/npm-run-path/-/npm-run-path-5.3.0.tgz", + "integrity": "sha512-ppwTtiJZq0O/ai0z7yfudtBpWIoxM8yE6nHi1X47eFR2EWORqfbu6CnPlNsjeN683eT0qG6H/Pyf9fCcvjnnnQ==", "dev": true, + "license": "MIT", "dependencies": { "path-key": "^4.0.0" }, @@ -6316,6 +7549,7 @@ "resolved": "https://registry.npmjs.org/path-key/-/path-key-4.0.0.tgz", "integrity": "sha512-haREypq7xkM7ErfgIyA0z+Bj4AGKlMSdlQE2jvJo6huWD1EdkKYV+G/T4nq0YEF2vgTT8kqMFKo1uHn950r4SQ==", "dev": true, + "license": "MIT", "engines": { "node": ">=12" }, @@ -6406,34 +7640,35 @@ } }, "node_modules/npm/node_modules/@npmcli/arborist": { - "version": "7.5.0", + "version": "7.5.4", "inBundle": true, "license": "ISC", "dependencies": { "@isaacs/string-locale-compare": "^1.1.0", - "@npmcli/fs": "^3.1.0", + "@npmcli/fs": "^3.1.1", "@npmcli/installed-package-contents": "^2.1.0", "@npmcli/map-workspaces": "^3.0.2", - "@npmcli/metavuln-calculator": "^7.1.0", + "@npmcli/metavuln-calculator": "^7.1.1", "@npmcli/name-from-folder": "^2.0.0", "@npmcli/node-gyp": "^3.0.0", "@npmcli/package-json": "^5.1.0", "@npmcli/query": "^3.1.0", - "@npmcli/redact": "^1.1.0", - "@npmcli/run-script": "^8.0.0", - "bin-links": "^4.0.1", - "cacache": "^18.0.0", + "@npmcli/redact": "^2.0.0", + "@npmcli/run-script": "^8.1.0", + "bin-links": "^4.0.4", + "cacache": "^18.0.3", "common-ancestor-path": "^1.0.1", - "hosted-git-info": "^7.0.1", - "json-parse-even-better-errors": "^3.0.0", + "hosted-git-info": "^7.0.2", + "json-parse-even-better-errors": "^3.0.2", "json-stringify-nice": "^1.1.4", + "lru-cache": "^10.2.2", "minimatch": "^9.0.4", - "nopt": "^7.0.0", + "nopt": "^7.2.1", "npm-install-checks": "^6.2.0", "npm-package-arg": "^11.0.2", - "npm-pick-manifest": "^9.0.0", - "npm-registry-fetch": "^16.2.1", - "pacote": "^18.0.1", + "npm-pick-manifest": "^9.0.1", + "npm-registry-fetch": "^17.0.1", + "pacote": "^18.0.6", "parse-conflict-json": "^3.0.0", "proc-log": "^4.2.0", "proggy": "^2.0.0", @@ -6441,7 +7676,7 @@ "promise-call-limit": "^3.0.1", "read-package-json-fast": "^3.0.2", "semver": "^7.3.7", - "ssri": "^10.0.5", + "ssri": "^10.0.6", "treeverse": "^3.0.0", "walk-up-path": "^3.0.1" }, @@ -6453,16 +7688,16 @@ } }, "node_modules/npm/node_modules/@npmcli/config": { - "version": "8.3.0", + "version": "8.3.4", "inBundle": true, "license": "ISC", "dependencies": { "@npmcli/map-workspaces": "^3.0.2", + "@npmcli/package-json": "^5.1.1", "ci-info": "^4.0.0", "ini": "^4.1.2", - "nopt": "^7.0.0", + "nopt": "^7.2.1", "proc-log": "^4.2.0", - "read-package-json-fast": "^3.0.2", "semver": "^7.3.5", "walk-up-path": "^3.0.1" }, @@ -6471,7 +7706,7 @@ } }, "node_modules/npm/node_modules/@npmcli/fs": { - "version": "3.1.0", + "version": "3.1.1", "inBundle": true, "license": "ISC", "dependencies": { @@ -6482,11 +7717,12 @@ } }, "node_modules/npm/node_modules/@npmcli/git": { - "version": "5.0.6", + "version": "5.0.8", "inBundle": true, "license": "ISC", "dependencies": { "@npmcli/promise-spawn": "^7.0.0", + "ini": "^4.1.3", "lru-cache": "^10.0.1", "npm-pick-manifest": "^9.0.0", "proc-log": "^4.0.0", @@ -6529,7 +7765,7 @@ } }, "node_modules/npm/node_modules/@npmcli/metavuln-calculator": { - "version": "7.1.0", + "version": "7.1.1", "inBundle": true, "license": "ISC", "dependencies": { @@ -6560,7 +7796,7 @@ } }, "node_modules/npm/node_modules/@npmcli/package-json": { - "version": "5.1.0", + "version": "5.2.0", "inBundle": true, "license": "ISC", "dependencies": { @@ -6577,7 +7813,7 @@ } }, "node_modules/npm/node_modules/@npmcli/promise-spawn": { - "version": "7.0.1", + "version": "7.0.2", "inBundle": true, "license": "ISC", "dependencies": { @@ -6599,7 +7835,7 @@ } }, "node_modules/npm/node_modules/@npmcli/redact": { - "version": "1.1.0", + "version": "2.0.1", "inBundle": true, "license": "ISC", "engines": { @@ -6607,7 +7843,7 @@ } }, "node_modules/npm/node_modules/@npmcli/run-script": { - "version": "8.0.0", + "version": "8.1.0", "inBundle": true, "license": "ISC", "dependencies": { @@ -6632,11 +7868,11 @@ } }, "node_modules/npm/node_modules/@sigstore/bundle": { - "version": "2.3.1", + "version": "2.3.2", "inBundle": true, "license": "Apache-2.0", "dependencies": { - "@sigstore/protobuf-specs": "^0.3.1" + "@sigstore/protobuf-specs": "^0.3.2" }, "engines": { "node": "^16.14.0 || >=18.0.0" @@ -6651,7 +7887,7 @@ } }, "node_modules/npm/node_modules/@sigstore/protobuf-specs": { - "version": "0.3.1", + "version": "0.3.2", "inBundle": true, "license": "Apache-2.0", "engines": { @@ -6659,39 +7895,41 @@ } }, "node_modules/npm/node_modules/@sigstore/sign": { - "version": "2.3.0", + "version": "2.3.2", "inBundle": true, "license": "Apache-2.0", "dependencies": { - "@sigstore/bundle": "^2.3.0", + "@sigstore/bundle": "^2.3.2", "@sigstore/core": "^1.0.0", - "@sigstore/protobuf-specs": "^0.3.1", - "make-fetch-happen": "^13.0.0" + "@sigstore/protobuf-specs": "^0.3.2", + "make-fetch-happen": "^13.0.1", + "proc-log": "^4.2.0", + "promise-retry": "^2.0.1" }, "engines": { "node": "^16.14.0 || >=18.0.0" } }, "node_modules/npm/node_modules/@sigstore/tuf": { - "version": "2.3.2", + "version": "2.3.4", "inBundle": true, "license": "Apache-2.0", "dependencies": { - "@sigstore/protobuf-specs": "^0.3.0", - "tuf-js": "^2.2.0" + "@sigstore/protobuf-specs": "^0.3.2", + "tuf-js": "^2.2.1" }, "engines": { "node": "^16.14.0 || >=18.0.0" } }, "node_modules/npm/node_modules/@sigstore/verify": { - "version": "1.2.0", + "version": "1.2.1", "inBundle": true, "license": "Apache-2.0", "dependencies": { - "@sigstore/bundle": "^2.3.1", + "@sigstore/bundle": "^2.3.2", "@sigstore/core": "^1.1.0", - "@sigstore/protobuf-specs": "^0.3.1" + "@sigstore/protobuf-specs": "^0.3.2" }, "engines": { "node": "^16.14.0 || >=18.0.0" @@ -6706,12 +7944,12 @@ } }, "node_modules/npm/node_modules/@tufjs/models": { - "version": "2.0.0", + "version": "2.0.1", "inBundle": true, "license": "MIT", "dependencies": { "@tufjs/canonical-json": "2.0.0", - "minimatch": "^9.0.3" + "minimatch": "^9.0.4" }, "engines": { "node": "^16.14.0 || >=18.0.0" @@ -6783,7 +8021,7 @@ "license": "MIT" }, "node_modules/npm/node_modules/bin-links": { - "version": "4.0.3", + "version": "4.0.4", "inBundle": true, "license": "ISC", "dependencies": { @@ -6815,16 +8053,8 @@ "balanced-match": "^1.0.0" } }, - "node_modules/npm/node_modules/builtins": { - "version": "5.1.0", - "inBundle": true, - "license": "MIT", - "dependencies": { - "semver": "^7.0.0" - } - }, "node_modules/npm/node_modules/cacache": { - "version": "18.0.2", + "version": "18.0.3", "inBundle": true, "license": "ISC", "dependencies": { @@ -6879,7 +8109,7 @@ } }, "node_modules/npm/node_modules/cidr-regex": { - "version": "4.0.5", + "version": "4.1.1", "inBundle": true, "license": "BSD-2-Clause", "dependencies": { @@ -6910,7 +8140,7 @@ } }, "node_modules/npm/node_modules/cmd-shim": { - "version": "6.0.2", + "version": "6.0.3", "inBundle": true, "license": "ISC", "engines": { @@ -6977,7 +8207,7 @@ } }, "node_modules/npm/node_modules/debug": { - "version": "4.3.4", + "version": "4.3.5", "inBundle": true, "license": "MIT", "dependencies": { @@ -7051,7 +8281,7 @@ } }, "node_modules/npm/node_modules/foreground-child": { - "version": "3.1.1", + "version": "3.2.1", "inBundle": true, "license": "ISC", "dependencies": { @@ -7076,30 +8306,23 @@ "node": "^14.17.0 || ^16.13.0 || >=18.0.0" } }, - "node_modules/npm/node_modules/function-bind": { - "version": "1.1.2", - "inBundle": true, - "license": "MIT", - "funding": { - "url": "https://github.com/sponsors/ljharb" - } - }, "node_modules/npm/node_modules/glob": { - "version": "10.3.12", + "version": "10.4.2", "inBundle": true, "license": "ISC", "dependencies": { "foreground-child": "^3.1.0", - "jackspeak": "^2.3.6", - "minimatch": "^9.0.1", - "minipass": "^7.0.4", - "path-scurry": "^1.10.2" + "jackspeak": "^3.1.2", + "minimatch": "^9.0.4", + "minipass": "^7.1.2", + "package-json-from-dist": "^1.0.0", + "path-scurry": "^1.11.1" }, "bin": { "glob": "dist/esm/bin.mjs" }, "engines": { - "node": ">=16 || 14 >=14.17" + "node": ">=16 || 14 >=14.18" }, "funding": { "url": "https://github.com/sponsors/isaacs" @@ -7110,19 +8333,8 @@ "inBundle": true, "license": "ISC" }, - "node_modules/npm/node_modules/hasown": { - "version": "2.0.2", - "inBundle": true, - "license": "MIT", - "dependencies": { - "function-bind": "^1.1.2" - }, - "engines": { - "node": ">= 0.4" - } - }, "node_modules/npm/node_modules/hosted-git-info": { - "version": "7.0.1", + "version": "7.0.2", "inBundle": true, "license": "ISC", "dependencies": { @@ -7150,7 +8362,7 @@ } }, "node_modules/npm/node_modules/https-proxy-agent": { - "version": "7.0.4", + "version": "7.0.5", "inBundle": true, "license": "MIT", "dependencies": { @@ -7174,7 +8386,7 @@ } }, "node_modules/npm/node_modules/ignore-walk": { - "version": "6.0.4", + "version": "6.0.5", "inBundle": true, "license": "ISC", "dependencies": { @@ -7201,7 +8413,7 @@ } }, "node_modules/npm/node_modules/ini": { - "version": "4.1.2", + "version": "4.1.3", "inBundle": true, "license": "ISC", "engines": { @@ -7209,7 +8421,7 @@ } }, "node_modules/npm/node_modules/init-package-json": { - "version": "6.0.2", + "version": "6.0.3", "inBundle": true, "license": "ISC", "dependencies": { @@ -7237,11 +8449,6 @@ "node": ">= 12" } }, - "node_modules/npm/node_modules/ip-address/node_modules/sprintf-js": { - "version": "1.1.3", - "inBundle": true, - "license": "BSD-3-Clause" - }, "node_modules/npm/node_modules/ip-regex": { "version": "5.0.0", "inBundle": true, @@ -7254,27 +8461,16 @@ } }, "node_modules/npm/node_modules/is-cidr": { - "version": "5.0.5", + "version": "5.1.0", "inBundle": true, "license": "BSD-2-Clause", "dependencies": { - "cidr-regex": "^4.0.4" + "cidr-regex": "^4.1.1" }, "engines": { "node": ">=14" } }, - "node_modules/npm/node_modules/is-core-module": { - "version": "2.13.1", - "inBundle": true, - "license": "MIT", - "dependencies": { - "hasown": "^2.0.0" - }, - "funding": { - "url": "https://github.com/sponsors/ljharb" - } - }, "node_modules/npm/node_modules/is-fullwidth-code-point": { "version": "3.0.0", "inBundle": true, @@ -7294,7 +8490,7 @@ "license": "ISC" }, "node_modules/npm/node_modules/jackspeak": { - "version": "2.3.6", + "version": "3.4.0", "inBundle": true, "license": "BlueOak-1.0.0", "dependencies": { @@ -7316,7 +8512,7 @@ "license": "MIT" }, "node_modules/npm/node_modules/json-parse-even-better-errors": { - "version": "3.0.1", + "version": "3.0.2", "inBundle": true, "license": "MIT", "engines": { @@ -7350,29 +8546,29 @@ "license": "MIT" }, "node_modules/npm/node_modules/libnpmaccess": { - "version": "8.0.4", + "version": "8.0.6", "inBundle": true, "license": "ISC", "dependencies": { "npm-package-arg": "^11.0.2", - "npm-registry-fetch": "^16.2.1" + "npm-registry-fetch": "^17.0.1" }, "engines": { "node": "^16.14.0 || >=18.0.0" } }, "node_modules/npm/node_modules/libnpmdiff": { - "version": "6.1.0", + "version": "6.1.4", "inBundle": true, "license": "ISC", "dependencies": { - "@npmcli/arborist": "^7.2.1", + "@npmcli/arborist": "^7.5.4", "@npmcli/installed-package-contents": "^2.1.0", "binary-extensions": "^2.3.0", "diff": "^5.1.0", "minimatch": "^9.0.4", "npm-package-arg": "^11.0.2", - "pacote": "^18.0.1", + "pacote": "^18.0.6", "tar": "^6.2.1" }, "engines": { @@ -7380,15 +8576,15 @@ } }, "node_modules/npm/node_modules/libnpmexec": { - "version": "8.0.0", + "version": "8.1.3", "inBundle": true, "license": "ISC", "dependencies": { - "@npmcli/arborist": "^7.2.1", - "@npmcli/run-script": "^8.0.0", + "@npmcli/arborist": "^7.5.4", + "@npmcli/run-script": "^8.1.0", "ci-info": "^4.0.0", "npm-package-arg": "^11.0.2", - "pacote": "^18.0.1", + "pacote": "^18.0.6", "proc-log": "^4.2.0", "read": "^3.0.1", "read-package-json-fast": "^3.0.2", @@ -7400,103 +8596,103 @@ } }, "node_modules/npm/node_modules/libnpmfund": { - "version": "5.0.8", + "version": "5.0.12", "inBundle": true, "license": "ISC", "dependencies": { - "@npmcli/arborist": "^7.2.1" + "@npmcli/arborist": "^7.5.4" }, "engines": { "node": "^16.14.0 || >=18.0.0" } }, "node_modules/npm/node_modules/libnpmhook": { - "version": "10.0.3", + "version": "10.0.5", "inBundle": true, "license": "ISC", "dependencies": { "aproba": "^2.0.0", - "npm-registry-fetch": "^16.2.1" + "npm-registry-fetch": "^17.0.1" }, "engines": { "node": "^16.14.0 || >=18.0.0" } }, "node_modules/npm/node_modules/libnpmorg": { - "version": "6.0.4", + "version": "6.0.6", "inBundle": true, "license": "ISC", "dependencies": { "aproba": "^2.0.0", - "npm-registry-fetch": "^16.2.1" + "npm-registry-fetch": "^17.0.1" }, "engines": { "node": "^16.14.0 || >=18.0.0" } }, "node_modules/npm/node_modules/libnpmpack": { - "version": "7.0.0", + "version": "7.0.4", "inBundle": true, "license": "ISC", "dependencies": { - "@npmcli/arborist": "^7.2.1", - "@npmcli/run-script": "^8.0.0", + "@npmcli/arborist": "^7.5.4", + "@npmcli/run-script": "^8.1.0", "npm-package-arg": "^11.0.2", - "pacote": "^18.0.1" + "pacote": "^18.0.6" }, "engines": { "node": "^16.14.0 || >=18.0.0" } }, "node_modules/npm/node_modules/libnpmpublish": { - "version": "9.0.6", + "version": "9.0.9", "inBundle": true, "license": "ISC", "dependencies": { "ci-info": "^4.0.0", - "normalize-package-data": "^6.0.0", + "normalize-package-data": "^6.0.1", "npm-package-arg": "^11.0.2", - "npm-registry-fetch": "^16.2.1", + "npm-registry-fetch": "^17.0.1", "proc-log": "^4.2.0", "semver": "^7.3.7", "sigstore": "^2.2.0", - "ssri": "^10.0.5" + "ssri": "^10.0.6" }, "engines": { "node": "^16.14.0 || >=18.0.0" } }, "node_modules/npm/node_modules/libnpmsearch": { - "version": "7.0.3", + "version": "7.0.6", "inBundle": true, "license": "ISC", "dependencies": { - "npm-registry-fetch": "^16.2.1" + "npm-registry-fetch": "^17.0.1" }, "engines": { "node": "^16.14.0 || >=18.0.0" } }, "node_modules/npm/node_modules/libnpmteam": { - "version": "6.0.3", + "version": "6.0.5", "inBundle": true, "license": "ISC", "dependencies": { "aproba": "^2.0.0", - "npm-registry-fetch": "^16.2.1" + "npm-registry-fetch": "^17.0.1" }, "engines": { "node": "^16.14.0 || >=18.0.0" } }, "node_modules/npm/node_modules/libnpmversion": { - "version": "6.0.0", + "version": "6.0.3", "inBundle": true, "license": "ISC", "dependencies": { - "@npmcli/git": "^5.0.6", - "@npmcli/run-script": "^8.0.0", - "json-parse-even-better-errors": "^3.0.0", + "@npmcli/git": "^5.0.7", + "@npmcli/run-script": "^8.1.0", + "json-parse-even-better-errors": "^3.0.2", "proc-log": "^4.2.0", "semver": "^7.3.7" }, @@ -7505,7 +8701,7 @@ } }, "node_modules/npm/node_modules/lru-cache": { - "version": "10.2.0", + "version": "10.2.2", "inBundle": true, "license": "ISC", "engines": { @@ -7513,7 +8709,7 @@ } }, "node_modules/npm/node_modules/make-fetch-happen": { - "version": "13.0.0", + "version": "13.0.1", "inBundle": true, "license": "ISC", "dependencies": { @@ -7526,6 +8722,7 @@ "minipass-flush": "^1.0.5", "minipass-pipeline": "^1.2.4", "negotiator": "^0.6.3", + "proc-log": "^4.2.0", "promise-retry": "^2.0.1", "ssri": "^10.0.0" }, @@ -7534,7 +8731,7 @@ } }, "node_modules/npm/node_modules/minimatch": { - "version": "9.0.4", + "version": "9.0.5", "inBundle": true, "license": "ISC", "dependencies": { @@ -7548,7 +8745,7 @@ } }, "node_modules/npm/node_modules/minipass": { - "version": "7.0.4", + "version": 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"node_modules/npm/node_modules/normalize-package-data": { - "version": "6.0.0", + "version": "6.0.2", "inBundle": true, "license": "BSD-2-Clause", "dependencies": { "hosted-git-info": "^7.0.0", - "is-core-module": "^2.8.1", "semver": "^7.3.5", "validate-npm-package-license": "^3.0.4" }, @@ -7791,7 +8967,7 @@ } }, "node_modules/npm/node_modules/npm-bundled": { - "version": "3.0.0", + "version": "3.0.1", "inBundle": true, "license": "ISC", "dependencies": { @@ -7846,7 +9022,7 @@ } }, "node_modules/npm/node_modules/npm-pick-manifest": { - "version": "9.0.0", + "version": "9.1.0", "inBundle": true, "license": "ISC", "dependencies": { @@ -7860,27 +9036,27 @@ } }, "node_modules/npm/node_modules/npm-profile": { - "version": "9.0.1", + "version": "10.0.0", "inBundle": true, "license": "ISC", "dependencies": { - "npm-registry-fetch": "^16.0.0", + "npm-registry-fetch": "^17.0.1", "proc-log": "^4.0.0" }, "engines": { - "node": "^16.14.0 || >=18.0.0" + "node": ">=18.0.0" } }, "node_modules/npm/node_modules/npm-registry-fetch": { - "version": "16.2.1", + "version": "17.1.0", "inBundle": true, "license": "ISC", "dependencies": { - "@npmcli/redact": "^1.1.0", + "@npmcli/redact": "^2.0.0", + "jsonparse": "^1.3.1", "make-fetch-happen": "^13.0.0", "minipass": "^7.0.2", "minipass-fetch": "^3.0.0", - "minipass-json-stream": "^1.0.1", "minizlib": "^2.1.2", "npm-package-arg": "^11.0.0", "proc-log": "^4.0.0" @@ -7890,7 +9066,7 @@ } }, "node_modules/npm/node_modules/npm-user-validate": { - "version": "2.0.0", + "version": "2.0.1", "inBundle": true, "license": "BSD-2-Clause", "engines": { @@ -7911,8 +9087,13 @@ "url": "https://github.com/sponsors/sindresorhus" } }, + "node_modules/npm/node_modules/package-json-from-dist": { + "version": "1.0.0", + "inBundle": true, + "license": "BlueOak-1.0.0" + }, "node_modules/npm/node_modules/pacote": { - "version": "18.0.2", + "version": "18.0.6", "inBundle": true, "license": "ISC", "dependencies": { @@ -7927,7 +9108,7 @@ 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"dependencies": { @@ -8381,13 +9553,13 @@ } }, "node_modules/npm/node_modules/tuf-js": { - "version": "2.2.0", + "version": "2.2.1", "inBundle": true, "license": "MIT", "dependencies": { - "@tufjs/models": "2.0.0", + "@tufjs/models": "2.0.1", "debug": "^4.3.4", - "make-fetch-happen": "^13.0.0" + "make-fetch-happen": "^13.0.1" }, "engines": { "node": "^16.14.0 || >=18.0.0" @@ -8439,12 +9611,9 @@ } }, "node_modules/npm/node_modules/validate-npm-package-name": { - "version": "5.0.0", + "version": "5.0.1", "inBundle": true, "license": "ISC", - "dependencies": { - "builtins": "^5.0.0" - }, "engines": { "node": "^14.17.0 || ^16.13.0 || >=18.0.0" } @@ -8587,10 +9756,11 @@ "license": "ISC" }, "node_modules/nyc": { - "version": "15.1.0", - "resolved": "https://registry.npmjs.org/nyc/-/nyc-15.1.0.tgz", - "integrity": "sha512-jMW04n9SxKdKi1ZMGhvUTHBN0EICCRkHemEoE5jm6mTYcqcdas0ATzgUgejlQUHMvpnOZqGB5Xxsv9KxJW1j8A==", + "version": "17.0.0", + "resolved": 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"https://registry.npmjs.org/commander/-/commander-2.20.3.tgz", + "integrity": "sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ==", + "license": "MIT" + }, + "node_modules/xtend": { + "version": "2.2.0", + "resolved": "https://registry.npmjs.org/xtend/-/xtend-2.2.0.tgz", + "integrity": "sha512-SLt5uylT+4aoXxXuwtQp5ZnMMzhDb1Xkg4pEqc00WUJCQifPfV9Ub1VrNhp9kXkrjZD2I2Hl8WnjP37jzZLPZw==", + "dev": true, + "engines": { + "node": ">=0.4" + } + }, "node_modules/y18n": { "version": "4.0.3", "resolved": "https://registry.npmjs.org/y18n/-/y18n-4.0.3.tgz", "integrity": "sha512-JKhqTOwSrqNA1NY5lSztJ1GrBiUodLMmIZuLiDaMRJ+itFd+ABVE8XBjOvIWL+rSqNDC74LCSFmlb/U4UZ4hJQ==", - "dev": true + "dev": true, + "license": "ISC" }, "node_modules/yallist": { "version": "3.1.1", "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz", - "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==" + "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==", + "license": "ISC" }, "node_modules/yaml": { "version": "1.10.2", "resolved": "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz", "integrity": "sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg==", + "license": "ISC", "engines": { "node": ">= 6" } @@ -11730,6 +13306,7 @@ "resolved": "https://registry.npmjs.org/yargs/-/yargs-15.4.1.tgz", "integrity": "sha512-aePbxDmcYW++PaqBsJ+HYUFwCdv4LVvdnhBy78E57PIor8/OVvhMrADFFEDh8DHDFRv/O9i3lPhsENjO7QX0+A==", "dev": true, + "license": "MIT", "dependencies": { "cliui": "^6.0.0", "decamelize": "^1.2.0", @@ -11752,6 +13329,7 @@ "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-18.1.3.tgz", "integrity": "sha512-o50j0JeToy/4K6OZcaQmW6lyXXKhq7csREXcDwk2omFPJEwUNOVtJKvmDr9EI1fAJZUyZcRF7kxGBWmRXudrCQ==", "dev": true, + "license": "ISC", "dependencies": { "camelcase": "^5.0.0", "decamelize": "^1.2.0" diff --git a/package.json b/package.json index b6711c654..bab856489 100644 --- a/package.json +++ b/package.json @@ -24,21 +24,21 @@ "print-version": "./print_version.sh" }, "dependencies": { - "@cornerstonejs/core": "^1.81.2", - "@cornerstonejs/dicom-image-loader": "^1.81.2", - "@cornerstonejs/streaming-image-volume-loader": "^1.81.2", - "@cornerstonejs/tools": "^1.81.2", + "@cornerstonejs/core": "^1.82.4", + "@cornerstonejs/dicom-image-loader": "^1.82.4", + "@cornerstonejs/streaming-image-volume-loader": "^1.82.4", + "@cornerstonejs/tools": "^1.82.4", "@fnndsc/chrisapi": "^1.15.0", "@niivue/niivue": "^0.41.1", "@patternfly/react-catalog-view-extension": "^5.0.0", "@patternfly/react-charts": "^7.3.0", - "@patternfly/react-core": "^5.3.3", + "@patternfly/react-core": "^5.3.4", "@patternfly/react-log-viewer": "^5.2.0", - "@patternfly/react-table": "^5.3.3", + "@patternfly/react-table": "^5.3.4", "@react-hook/resize-observer": "^2.0.1", - "@tanstack/react-query": "^5.49.2", - "antd": "^5.19.0", - "axios": "^1.6.5", + "@tanstack/react-query": "^5.51.1", + "antd": "^5.19.2", + "axios": "^1.7.2", "chris-utility": "^1.1.6", "d3-hierarchy": "^1.1.9", "d3-selection": "^1.4.2", @@ -47,16 +47,16 @@ "date-fns": "^3.6.0", "dicom-parser": "^1.8.21", "email-validator": "^2.0.4", - "fp-ts": "^2.16.2", + "fp-ts": "^2.16.8", "hammerjs": "^2.0.8", - "immer": "^10.0.3", + "immer": "^10.1.1", "keymirror": "^0.1.1", "lodash": "^4.17.21", - "marked": "^11.1.1", + "marked": "^13.0.2", "micromark": "^4.0.0", "micromark-extension-gfm": "^3.0.0", "niivue-react": "github:niivue/niivue-react", - "npm": "^10.6.0", + "npm": "^10.8.2", "pako": "^1.0.11", "preval.macro": "^5.0.0", "query-string": "^9.0.0", @@ -88,7 +88,7 @@ "vite-plugin-babel-macros": "^1.0.6" }, "devDependencies": { - "@biomejs/biome": "1.5.3", + "@biomejs/biome": "1.8.3", "@faker-js/faker": "^8.4.0", "@playwright/test": "^1.41.2", "@types/d3-hierarchy": "^1.1.7", @@ -103,14 +103,15 @@ "@types/uuid": "^9.0.6", "@vitejs/plugin-react-swc": "^3.5.0", "@vitest/coverage-v8": "^1.2.2", - "happy-dom": "^13.3.8", + "happy-dom": "^14.12.3", "lefthook": "^1.6.1", - "nyc": "^15.1.0", - "playwright": "^1.41.2", + "nyc": "^17.0.0", + "playwright": "^1.45.1", "redux-devtools-extension": "^2.13.9", "redux-logger": "^3.0.6", - "vite": "^5.3.2", + "rollup-plugin-node-builtins": "^2.1.2", + "vite": "^5.3.3", "vite-plugin-istanbul": "^5.0.0", - "vitest": "^1.2.2" + "vitest": "^2.0.3" } } diff --git a/vite.config.ts b/vite.config.ts index 3dc74396d..81bc8c50b 100644 --- a/vite.config.ts +++ b/vite.config.ts @@ -26,6 +26,7 @@ export default defineConfig({ // workaround for "Cornerstone3D tools does not build with vite" // https://github.com/cornerstonejs/cornerstone3D/issues/1071 "@cornerstonejs/tools": "@cornerstonejs/tools/dist/umd/index.js", + "fs": require.resolve("rollup-plugin-node-builtins") }, }, }); From b0a7c87814d010d6da2e33f845250a5b42900768 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 15 Jul 2024 12:36:00 -0400 Subject: [PATCH 002/337] feat: Update @fnndsc/chrisapi --- package-lock.json | 521 +--------------------------------------------- package.json | 4 +- 2 files changed, 10 insertions(+), 515 deletions(-) diff --git a/package-lock.json b/package-lock.json index 915fb9753..c4c355df6 100644 --- a/package-lock.json +++ b/package-lock.json @@ -12,7 +12,7 @@ "@cornerstonejs/dicom-image-loader": "^1.82.4", "@cornerstonejs/streaming-image-volume-loader": "^1.82.4", "@cornerstonejs/tools": "^1.82.4", - "@fnndsc/chrisapi": "^1.15.0", + "@fnndsc/chrisapi": "^1.21.0", "@niivue/niivue": "^0.41.1", "@patternfly/react-catalog-view-extension": "^5.0.0", "@patternfly/react-charts": "^7.3.0", @@ -93,7 +93,7 @@ "playwright": "^1.45.1", "redux-devtools-extension": "^2.13.9", "redux-logger": "^3.0.6", - "rollup-plugin-node-builtins": "^2.1.2", + "rollup-plugin-node-builtins": "^2.0.0", "vite": "^5.3.3", "vite-plugin-istanbul": "^5.0.0", "vitest": "^2.0.3" @@ -2860,25 +2860,6 @@ "node": ">=10" } }, - "node_modules/abstract-leveldown": { - "version": "0.12.4", - "resolved": "https://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-0.12.4.tgz", - "integrity": "sha512-TOod9d5RDExo6STLMGa+04HGkl+TlMfbDnTyN93/ETJ9DpQ0DaYLqcMZlbXvdc4W3vVo1Qrl+WhSp8zvDsJ+jA==", - "dev": true, - "license": "MIT", - "dependencies": { - "xtend": "~3.0.0" - } - }, - "node_modules/abstract-leveldown/node_modules/xtend": { - "version": "3.0.0", - "resolved": "https://registry.npmjs.org/xtend/-/xtend-3.0.0.tgz", - "integrity": "sha512-sp/sT9OALMjRW1fKDlPeuSZlDQpkqReA0pyJukniWbTGoEKefHxhGJynE3PNhUMlcM8qWIjPwecwCw4LArS5Eg==", - "dev": true, - "engines": { - "node": ">=0.4" - } - }, "node_modules/accessor-fn": { "version": "1.5.0", "resolved": "https://registry.npmjs.org/accessor-fn/-/accessor-fn-1.5.0.tgz", @@ -3224,36 +3205,6 @@ "node": "*" } }, - "node_modules/bl": { - "version": "0.8.2", - "resolved": "https://registry.npmjs.org/bl/-/bl-0.8.2.tgz", - "integrity": 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"resolved": "https://registry.npmjs.org/bn.js/-/bn.js-5.2.1.tgz", @@ -3318,17 +3269,6 @@ "safe-buffer": "^5.1.2" } }, - "node_modules/browserify-fs": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/browserify-fs/-/browserify-fs-1.0.0.tgz", - "integrity": "sha512-8LqHRPuAEKvyTX34R6tsw4bO2ro6j9DmlYBhiYWHRM26Zv2cBw1fJOU0NeUQ0RkXkPn/PFBjhA0dm4AgaBurTg==", - "dev": true, - "dependencies": { - "level-filesystem": "^1.0.1", - "level-js": "^2.1.3", - "levelup": "^0.18.2" - } - }, "node_modules/browserify-rsa": { "version": "4.1.0", "resolved": "https://registry.npmjs.org/browserify-rsa/-/browserify-rsa-4.1.0.tgz", @@ -3362,13 +3302,6 @@ "node": ">= 0.12" } }, - "node_modules/browserify-sign/node_modules/isarray": { - "version": "1.0.0", - "resolved": "https://registry.npmjs.org/isarray/-/isarray-1.0.0.tgz", - "integrity": "sha512-VLghIWNM6ELQzo7zwmcg0NmTVyWKYjvIeM83yjp0wRDTmUnrM678fQbcKBo6n2CJEF0szoG//ytg+TKla89ALQ==", - "dev": true, - "license": "MIT" - }, "node_modules/browserify-sign/node_modules/readable-stream": { "version": "2.3.8", "resolved": "https://registry.npmjs.org/readable-stream/-/readable-stream-2.3.8.tgz", @@ -3448,13 +3381,6 @@ "dev": true, "license": "MIT" }, - "node_modules/buffer-from": { - "version": "1.1.2", - "resolved": "https://registry.npmjs.org/buffer-from/-/buffer-from-1.1.2.tgz", - "integrity": "sha512-E+XQCRwSbaaiChtv6k6Dwgc+bx+Bs6vuKJHHl5kox/BaKbhiXzqQOwK4cO22yElGp2OCmjwVhT3HmxgyPGnJfQ==", - "dev": true, - "license": "MIT" - }, "node_modules/buffer-xor": { "version": "1.0.3", "resolved": "https://registry.npmjs.org/buffer-xor/-/buffer-xor-1.0.3.tgz", @@ -3687,16 +3613,6 @@ "wrap-ansi": "^6.2.0" } }, - "node_modules/clone": { - "version": "0.1.19", - "resolved": "https://registry.npmjs.org/clone/-/clone-0.1.19.tgz", - "integrity": "sha512-IO78I0y6JcSpEPHzK4obKdsL7E7oLdRVDVOLwr2Hkbjsb+Eoz0dxW6tef0WizoKu0gLC4oZSZuEF4U2K6w1WQw==", - "dev": true, - "license": "MIT", - "engines": { - "node": "*" - } - }, 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"https://registry.npmjs.org/rollup-plugin-node-builtins/-/rollup-plugin-node-builtins-2.1.2.tgz", - "integrity": "sha512-bxdnJw8jIivr2yEyt8IZSGqZkygIJOGAWypXvHXnwKAbUcN4Q/dGTx7K0oAJryC/m6aq6tKutltSeXtuogU6sw==", + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/rollup-plugin-node-builtins/-/rollup-plugin-node-builtins-2.0.0.tgz", + "integrity": "sha512-jvsEYNf5U95YttEQbs5c6H7YSMYGs3SWA8/MfnlQ9ddijsgYbq8uKx4WQ1J8Zyrq+tgPF0Quu48PURrlcMZWoQ==", "dev": true, "license": "ISC", "dependencies": { - "browserify-fs": "^1.0.0", "buffer-es6": "^4.9.2", "crypto-browserify": "^3.11.0", "process-es6": "^0.11.2" @@ -11914,13 +11432,6 @@ "integrity": "sha512-u/1tdPl4yQnPBjnVrmdLo9gtuLvELKsAoRapekWggdiQNvvvum+jYF329d84NAa660KQw7pB2n36KrIKVoXa3A==", "license": "MIT" }, - "node_modules/string-range": { - "version": "1.2.2", - "resolved": "https://registry.npmjs.org/string-range/-/string-range-1.2.2.tgz", - "integrity": "sha512-tYft6IFi8SjplJpxCUxyqisD3b+R2CSkomrtJYCkvuf1KuCAWgz7YXt4O0jip7efpfCemwHEzTEAO8EuOYgh3w==", - "dev": true, - "license": "MIT" - }, "node_modules/string-width": { "version": "4.2.3", "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz", @@ -12156,13 +11667,6 @@ "node": ">=8" } }, - "node_modules/typedarray": { - "version": "0.0.6", - "resolved": "https://registry.npmjs.org/typedarray/-/typedarray-0.0.6.tgz", - "integrity": "sha512-/aCDEGatGvZ2BIk+HmLf4ifCJFwvKFNb9/JeZPMulfgFracn9QFcAf5GO8B/mweUjSoblS5In0cWhqpfs/5PQA==", - "dev": true, - "license": "MIT" - }, "node_modules/typedarray-to-buffer": { "version": "3.1.5", "resolved": "https://registry.npmjs.org/typedarray-to-buffer/-/typedarray-to-buffer-3.1.5.tgz", @@ -13270,15 +12774,6 @@ "integrity": "sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ==", "license": "MIT" }, - "node_modules/xtend": { - "version": "2.2.0", - "resolved": "https://registry.npmjs.org/xtend/-/xtend-2.2.0.tgz", - "integrity": "sha512-SLt5uylT+4aoXxXuwtQp5ZnMMzhDb1Xkg4pEqc00WUJCQifPfV9Ub1VrNhp9kXkrjZD2I2Hl8WnjP37jzZLPZw==", - "dev": true, - "engines": { - "node": ">=0.4" - } - }, "node_modules/y18n": { "version": "4.0.3", "resolved": "https://registry.npmjs.org/y18n/-/y18n-4.0.3.tgz", diff --git a/package.json b/package.json index bab856489..560abecb8 100644 --- a/package.json +++ b/package.json @@ -28,7 +28,7 @@ "@cornerstonejs/dicom-image-loader": "^1.82.4", "@cornerstonejs/streaming-image-volume-loader": "^1.82.4", "@cornerstonejs/tools": "^1.82.4", - "@fnndsc/chrisapi": "^1.15.0", + "@fnndsc/chrisapi": "^1.21.0", "@niivue/niivue": "^0.41.1", "@patternfly/react-catalog-view-extension": "^5.0.0", "@patternfly/react-charts": "^7.3.0", @@ -109,7 +109,7 @@ "playwright": "^1.45.1", "redux-devtools-extension": "^2.13.9", "redux-logger": "^3.0.6", - "rollup-plugin-node-builtins": "^2.1.2", + "rollup-plugin-node-builtins": "^2.0.0", "vite": "^5.3.3", "vite-plugin-istanbul": "^5.0.0", "vitest": "^2.0.3" From 1fbecc918784bc66ca37645e31ffa46911317598 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 15 Jul 2024 13:27:42 -0400 Subject: [PATCH 003/337] feat: Update the path to upload files and create a feed --- src/api/common.ts | 15 +-- src/components/CreateFeed/CreateFeed.tsx | 37 ++++--- src/components/CreateFeed/createFeedHelper.ts | 96 ++++++++++--------- 3 files changed, 75 insertions(+), 73 deletions(-) diff --git a/src/api/common.ts b/src/api/common.ts index e265507ef..6f6daef8b 100644 --- a/src/api/common.ts +++ b/src/api/common.ts @@ -1,9 +1,9 @@ import * as React from "react"; -import axios, { AxiosProgressEvent } from "axios"; +import axios, { type AxiosProgressEvent } from "axios"; import ChrisAPIClient from "./chrisapiclient"; -import { +import type { Pipeline, - type PipelineList, + PipelineList, PluginPiping, Feed, Plugin, @@ -61,7 +61,7 @@ function useAsync(initialState?: any) { (promise: any) => { if (!promise || !promise.then) { throw new Error( - `The argument passed to useAsync().run must be a promise`, + "The argument passed to useAsync().run must be a promise", ); } safeSetState({ status: "pending" }); @@ -247,8 +247,9 @@ export const generatePipelineWithName = async (pipelineName: string) => { name: pipelineName, }); const pipelineInstanceId = pipelineInstanceList.data[0].id; - const pipelineInstance: Pipeline = - await client.getPipeline(pipelineInstanceId); + const pipelineInstance: Pipeline = (await client.getPipeline( + pipelineInstanceId, + )) as Pipeline; const resources = await fetchResources(pipelineInstance); return { resources, @@ -400,7 +401,7 @@ export const uploadWrapper = ( token: string, onUploadProgress?: (file: any, progressEvent: AxiosProgressEvent) => void, ) => { - const url = `${import.meta.env.VITE_CHRIS_UI_URL}uploadedfiles/`; + const url = `${import.meta.env.VITE_CHRIS_UI_URL}userfiles/`; return localFiles.map((file) => { const onUploadProgressWrap = (progressEvent: AxiosProgressEvent) => { onUploadProgress?.(file, progressEvent); diff --git a/src/components/CreateFeed/CreateFeed.tsx b/src/components/CreateFeed/CreateFeed.tsx index f67f6bb97..24d02177d 100644 --- a/src/components/CreateFeed/CreateFeed.tsx +++ b/src/components/CreateFeed/CreateFeed.tsx @@ -1,4 +1,4 @@ -import { Feed } from "@fnndsc/chrisapi"; +import type { Feed } from "@fnndsc/chrisapi"; import { Button, Modal, @@ -71,14 +71,13 @@ export default function CreateFeed() { router.actions.clearFeedData(); }; - const enableSave = + const enableSave = !!( data.chrisFiles.length > 0 || data.localFiles.length > 0 || Object.keys(requiredInput).length > 0 || Object.keys(dropdownInput).length > 0 || pluginMeta !== undefined - ? true - : false; + ); const handleSave = async () => { setFeedProcessing(true); @@ -120,10 +119,16 @@ export default function CreateFeed() { name: state.data.feedName, }); - // Set analysis tags - for (const tag of state.data.tags) { + /** + * @deprecated + * The following code is deprecated and should not be used. + * It sets analysis tags on the feed. + + + for (const tag of state.data.tags) { feed.tagFeed(tag.data.id); - } + } + */ // Set analysis description const note = await feed.getNote(); @@ -200,11 +205,8 @@ export default function CreateFeed() { [handleDispatch], ); - const allRequiredFieldsNotEmpty: boolean = selectedConfig.includes( - "fs_plugin", - ) - ? true - : false; + const allRequiredFieldsNotEmpty: boolean = + !!selectedConfig.includes("fs_plugin"); const filesChoosen = data.chrisFiles.length > 0 || data.localFiles.length > 0; @@ -256,7 +258,7 @@ export default function CreateFeed() { id={1} name="Basic-Information" footer={{ - isNextDisabled: data.feedName ? false : true, + isNextDisabled: !data.feedName, isBackDisabled: true, }} > @@ -266,17 +268,14 @@ export default function CreateFeed() { id={2} name="Analysis Data Selection" footer={{ - isNextDisabled: - filesChoosen || allRequiredFieldsNotEmpty ? false : true, + isNextDisabled: !(filesChoosen || allRequiredFieldsNotEmpty), }} > {withSelectionAlert( , )} @@ -289,7 +288,7 @@ export default function CreateFeed() { footer={{ onNext: handleSave, nextButtonText: "Create Analysis", - isNextDisabled: !enableSave || feedProcessing ? true : false, + isNextDisabled: !!(!enableSave || feedProcessing), }} > diff --git a/src/components/CreateFeed/createFeedHelper.ts b/src/components/CreateFeed/createFeedHelper.ts index 24452e198..2ae9f5641 100644 --- a/src/components/CreateFeed/createFeedHelper.ts +++ b/src/components/CreateFeed/createFeedHelper.ts @@ -1,4 +1,4 @@ -import { +import type { Feed, Plugin, PluginInstance, @@ -10,10 +10,10 @@ import { limitConcurrency, uploadWrapper, } from "../../api/common"; -import { InputType } from "../AddNode/types"; +import type { InputType } from "../AddNode/types"; import { unpackParametersIntoObject } from "../AddNode/utils"; -import { PipelineState } from "../PipelinesCopy/context"; -import { CreateFeedData } from "./types/feed"; +import type { PipelineState } from "../PipelinesCopy/context"; +import type { CreateFeedData } from "./types/feed"; export const createFeed = async ( data: CreateFeedData, @@ -24,16 +24,16 @@ export const createFeed = async ( ) => { const { chrisFiles, localFiles } = data; - let dirpath: string[] = []; + const dirpath: string[] = []; let feed: Feed; if (selectedConfig.includes("swift_storage")) { - dirpath = chrisFiles.map((path: string) => path); + dirpath.push(...chrisFiles); } if (selectedConfig.includes("local_select")) { const generateUnique = generatePathForLocalFile(data); - const path = `${username}/uploads/${generateUnique}`; + const path = `home/${username}/uploads/${generateUnique}`; dirpath.push(path); try { @@ -46,53 +46,55 @@ export const createFeed = async ( try { const client = ChrisAPIClient.getClient(); + const dircopy = await getPlugin("pl-dircopy"); - if (dircopy) { - const createdInstance = await client.createPluginInstance( - dircopy.data.id, - { - //@ts-ignore - dir: dirpath.join(","), - }, - ); - const { pipelineToAdd, computeInfo, titleInfo, selectedPipeline } = state; - const id = pipelineToAdd?.data.id; - const resources = selectedPipeline?.[id]; - if (createdInstance) { - if (resources) { - const { parameters } = resources; - - const nodes_info = client.computeWorkflowNodesInfo(parameters.data); - - for (const node of nodes_info) { - // Set compute info - const activeNode = computeInfo?.[id][node.piping_id]; - // Set Title - const titleSet = titleInfo?.[id][node.piping_id]; - - if (activeNode) { - const compute_node = activeNode.currentlySelected; - node.compute_resource_name = compute_node; - } - - if (titleSet) { - node.title = titleSet; - } - } + if (!dircopy) { + throw new Error("Failed to find pl-dircopy. Is pl-dircopy installed? "); + } + + const createdInstance = await client.createPluginInstance(dircopy.data.id, { + //@ts-ignore + dir: dirpath.join(","), + }); + + if (!createdInstance) { + throw new Error("Failed to create a dircopy instance"); + } - await client.createWorkflow(id, { - previous_plugin_inst_id: createdInstance.data.id, - nodes_info: JSON.stringify(nodes_info), - }); + const { pipelineToAdd, computeInfo, titleInfo, selectedPipeline } = state; + const id = pipelineToAdd?.data.id; + const resources = selectedPipeline?.[id]; + + if (resources) { + const { parameters } = resources; + + const nodes_info = client.computeWorkflowNodesInfo(parameters.data); + + for (const node of nodes_info) { + // Set compute info + const activeNode = computeInfo?.[id][node.piping_id]; + // Set Title + const titleSet = titleInfo?.[id][node.piping_id]; + + if (activeNode) { + const compute_node = activeNode.currentlySelected; + node.compute_resource_name = compute_node; } - feed = (await createdInstance.getFeed()) as Feed; - return feed; + if (titleSet) { + node.title = titleSet; + } } - throw new Error("Failed to create a dircopy instance"); + + await client.createWorkflow(id, { + previous_plugin_inst_id: createdInstance.data.id, + nodes_info: JSON.stringify(nodes_info), + }); } - return undefined; + + feed = (await createdInstance.getFeed()) as Feed; + return feed; } catch (e: any) { // biome-ignore lint/complexity/noUselessCatch: throw e; From f989bb337be1f03ec8c0459ecdf84184356294df Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 15 Jul 2024 15:35:37 -0400 Subject: [PATCH 004/337] feat: Update File Browser to use the new api --- .../FeedOutputBrowser/FeedOutputBrowser.tsx | 1 - .../FeedOutputBrowser/FileBrowser.tsx | 371 +++++++----------- src/components/FeedOutputBrowser/types.ts | 13 +- src/store/hooks.ts | 69 +++- src/store/resources/actions.ts | 10 +- src/store/resources/reducer.ts | 15 +- src/store/resources/saga.ts | 117 +++--- src/store/resources/types.ts | 18 +- 8 files changed, 309 insertions(+), 305 deletions(-) diff --git a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx index 72e00d265..8b9873289 100644 --- a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx +++ b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx @@ -4,7 +4,6 @@ import { EmptyStateVariant, Title, } from "@patternfly/react-core"; -import React from "react"; import type { PluginInstance } from "@fnndsc/chrisapi"; import FileBrowser from "./FileBrowser"; import { SpinContainer } from "../Common"; diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index f7ec1870a..3957a7223 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -1,4 +1,3 @@ -import type { FeedFile } from "@fnndsc/chrisapi"; import { Breadcrumb, BreadcrumbItem, @@ -9,18 +8,18 @@ import { DrawerPanelBody, DrawerPanelContent, Grid, + Tooltip, } from "@patternfly/react-core"; import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; -import { useMutation } from "@tanstack/react-query"; import { notification } from "antd"; -import React, { useContext } from "react"; +import { useContext, useEffect } from "react"; import { useDispatch } from "react-redux"; import { setFilePreviewPanel } from "../../store/drawer/actions"; import { clearSelectedFile, setSelectedFile, } from "../../store/explorer/actions"; -import { useTypedSelector } from "../../store/hooks"; +import useDownload, { useTypedSelector } from "../../store/hooks"; import { ClipboardCopyContainer, SpinContainer } from "../Common"; import { ThemeContext } from "../DarkTheme/useTheme"; import { DrawerActionButton } from "../Feeds/DrawerUtils"; @@ -29,156 +28,67 @@ import { DownloadIcon, FileIcon, FileImageIcon, - FileTxtIcon, FilePdfIcon, + FileTxtIcon, FolderIcon, + HomeIcon, } from "../Icons"; import FileDetailView from "../Preview/FileDetailView"; import XtkViewer from "../XtkViewer/XtkViewer"; -import { EmptyStateLoader } from "./FeedOutputBrowser"; import type { FileBrowserProps } from "./types"; import { bytesToSize } from "./utilities"; -const getFileName = (name: string) => { +export const getFileName = (name: string) => { return name.split("/").slice(-1).join(""); }; -let isDownloadInitiated = false; +const previewAnimation = [{ opacity: "0.0" }, { opacity: "1.0" }]; + +const previewAnimationTiming = { + duration: 1000, + iterations: 1, +}; const FileBrowser = (props: FileBrowserProps) => { + const dispatch = useDispatch(); + const feed = useTypedSelector((state) => state.feed.currentFeed.data); + const handleDownloadMutation = useDownload(feed); + const [api, contextHolder] = notification.useNotification(); + const { isSuccess, isError, error: downloadError } = handleDownloadMutation; const { isDarkTheme } = useContext(ThemeContext); const { pluginFilesPayload, handleFileClick, selected, filesLoading } = props; const selectedFile = useTypedSelector((state) => state.explorer.selectedFile); const drawerState = useTypedSelector((state) => state.drawers); - const feed = useTypedSelector((state) => state.feed.currentFeed.data); - - const dispatch = useDispatch(); - const [currentRowIndex, setCurrentRowIndex] = React.useState(0); - const { files, folders, path } = pluginFilesPayload; + const username = useTypedSelector((state) => state.user.username); + const { folderFiles, linkFiles, children, path } = pluginFilesPayload; const columnNames = { name: "Name", size: "Size", download: "", }; - const items = files && folders ? [...files, ...folders] : []; - const { id, plugin_name } = selected.data; - const pathSplit = path?.split(`/${plugin_name}_${id}/`); - const breadcrumb = path ? pathSplit[1].split("/") : []; - - const makeDataSourcePublic = async () => { - // Implement logic to make the data source public - await feed?.put({ - //@ts-ignore - public: true, - }); - }; - - const makeDataSourcePrivate = async () => { - // Implement logic to make the data source private again - await feed?.put({ - //@ts-ignore - public: false, - }); - }; - - const handleDownloadClick = async (item: FeedFile) => { - if (item) { - const privateFeed = feed?.data.public === false ? true : false; - try { - const fileName = getFileName(item.data.fname); - const link = document.createElement("a"); - - const url = item.collection.items[0].links[0].href; - if (!url) { - throw new Error("Failed to construct the url"); - } - - // This is highly inconsistent and needs to be investigated further - const authorizedUrl = `${url}`; // Add token as a query parameter - - // Make the data source public - privateFeed && (await makeDataSourcePublic()); - - // Create an anchor element - - link.href = authorizedUrl; - link.download = fileName; // Set the download attribute to specify the filename - // Append the anchor element to the document body - // Listen for the load event on the anchor element - - document.body.appendChild(link); - // Programmatically trigger the download - - isDownloadInitiated = true; - - link.click(); - // Remove the anchor element from the document body after the download is initiated - document.body.removeChild(link); - - // Wait for a short delay to ensure download initiation - await new Promise((resolve) => setTimeout(resolve, 100)); - - // If download is initiated, make the data source private - if (isDownloadInitiated && privateFeed) { - await makeDataSourcePrivate(); - } - privateFeed && (await makeDataSourcePrivate()); - - return item; - } catch (e) { - throw e; - } - } - }; - - const downloadMutation = useMutation({ - mutationFn: (item: FeedFile) => handleDownloadClick(item), - }); - - const { - isSuccess, - isPending, - isError, - error: downloadError, - data, - } = downloadMutation; - const [api, contextHolder] = notification.useNotification(); - - React.useEffect(() => { - if (isPending) { - api.info({ - message: "Processing download...", + const breadcrumb = path.split("/"); + const currentPath = `home/${username}/feeds/feed_${feed?.data.id}/${selected?.data.plugin_name}_${selected?.data.id}/data`; + + useEffect(() => { + if (isSuccess) { + api.success({ + message: "Successfully Triggered the Download", + duration: 1, }); - } - - if (data) { - const fileName = getFileName(data.data.fname); - if (isSuccess) { - api.success({ - message: `Triggered the Download for ${fileName}`, - }); - } - - if (isError) { - api.error({ - message: `Download Error: ${fileName}`, - //@ts-ignore - description: downloadError.message, - }); - } setTimeout(() => { - downloadMutation.reset(); + handleDownloadMutation.reset(); }, 1000); } - }, [isSuccess, isError, isPending, downloadError]); - - const previewAnimation = [{ opacity: "0.0" }, { opacity: "1.0" }]; - const previewAnimationTiming = { - duration: 1000, - iterations: 1, - }; + if (isError) { + api.error({ + message: "Download Error", + //@ts-ignore + description: downloadError.message, + }); + } + }, [isSuccess, isError, downloadError]); const generateBreadcrumb = (value: string, index: number) => { const onClick = () => { @@ -189,20 +99,27 @@ const FileBrowser = (props: FileBrowserProps) => { const findIndex = breadcrumb.findIndex((path) => path === value); if (findIndex !== -1) { const newPathList = breadcrumb.slice(0, findIndex + 1); - const combinedPathList = [ - ...pathSplit[0].split("/"), - `${plugin_name}_${id}`, - ...newPathList, - ]; - handleFileClick(combinedPathList.join("/")); + handleFileClick(newPathList.join("/")); } }; + // This is somewhat tricky. do not allow the user to click paths before the selected plugin. + const disabledIndex = breadcrumb.findIndex( + (path) => path === `${selected.data.plugin_name}_${selected.data.id}`, + ); + // If this selected plugin is of the type fs, assume that this is the first node of the tree and could have link files. All the paths + // that the user navigates to should not be clickable + const shouldNotClick = + (disabledIndex > 1 && index <= disabledIndex) || + selected.data.plugin_type === "fs"; + return ( { + shouldNotClick ? undefined : onClick(); + }} to={index === breadcrumb.length - 1 ? undefined : "#"} > {value} @@ -219,31 +136,18 @@ const FileBrowser = (props: FileBrowserProps) => { ?.animate(previewAnimation, previewAnimationTiming); }; - const handleItem = (item: string | FeedFile) => { - if (typeof item === "string") { - handleFileClick(`${path}/${item}`); - } else { + const handleItem = (item: any, type: string) => { + if (type === "link" || type === "folder") { + handleFileClick(item.data.path); + } + + if (type === "file") { toggleAnimation(); dispatch(setSelectedFile(item)); !drawerState.preview.open && dispatch(setFilePreviewPanel()); } }; - const handleNext = () => { - if (currentRowIndex + 1 < items.length) { - const item = items[currentRowIndex + 1]; - setCurrentRowIndex(currentRowIndex + 1); - handleItem(item); - } - }; - const handlePrevious = () => { - if (currentRowIndex - 1 >= 0) { - const item = items[currentRowIndex - 1]; - setCurrentRowIndex(currentRowIndex - 1); - handleItem(item); - } - }; - const previewPanel = ( { {drawerState.preview.currentlyActive === "preview" && selectedFile && ( { ); + const tableRowItem = (item: any, type: string) => { + let iconType: string; + let icon: React.ReactNode = null; + let fsize = " "; + let fileName = ""; + iconType = "UNKNOWN FORMAT"; + const pathList = + type === "folder" || type === "link" + ? item.data.path.split("/") + : item.data.fname.split("/"); + + fileName = pathList[pathList.length - 1]; + if (type === "file" && fileName.indexOf(".") > -1) { + iconType = getFileName(fileName)[0].toUpperCase(); + fsize = bytesToSize(item.data.fsize); + } else { + iconType = type; + } + const isPreviewing = selectedFile === item; + const backgroundColor = isDarkTheme ? "#002952" : "#E7F1FA"; + + icon = getIcon(iconType); + const fileNameComponent = ( +
+ {icon} + {fileName} +
+ ); + const downloadComponent = + type !== "file" ? undefined : ( + + + ); -} +}; -function LoadingTable() { +const LoadingTable = () => { return ( -
- -
+ ); -} +}; + +const FeedInfoColumn = ({ + feed, + onClick, +}: { feed: Feed; onClick: (feed: Feed) => void }) => ( + +); diff --git a/src/components/IconContainer/index.tsx b/src/components/IconContainer/index.tsx index 3386a85ec..e69de29bb 100644 --- a/src/components/IconContainer/index.tsx +++ b/src/components/IconContainer/index.tsx @@ -1,469 +0,0 @@ -import type { Feed } from "@fnndsc/chrisapi"; -import { - Button, - Checkbox, - Form, - FormGroup, - Modal, - ModalVariant, - TextInput, - ToggleGroup, - ToggleGroupItem, - Tooltip, -} from "@patternfly/react-core"; -import { useMutation, useQueryClient } from "@tanstack/react-query"; -import { Alert, Spin } from "antd"; -import { cujs } from "chris-utility"; -import React, { type ReactElement } from "react"; -import { useDispatch } from "react-redux"; -import ChrisAPIClient from "../../api/chrisapiclient"; -import { setBulkSelect } from "../../store/feed/actions"; -import { useTypedSelector } from "../../store/hooks"; -import { - ArchiveIcon, - DeleteIcon, - DuplicateIcon, - MergeIcon, - ShareIcon, -} from "../Icons"; - -function capitalizeFirstLetter(stringLetter: string) { - return stringLetter.charAt(0).toUpperCase() + stringLetter.slice(1); -} - -interface ModalState { - isOpen: boolean; - feedName: string; - currentAction: string; - modalDescription: string; - errorHandling: string; - sharePublically: boolean; -} - -const getInitialState = () => { - return { - isOpen: false, - feedName: "", - currentAction: "", - modalDescription: "", - errorHandling: "", - sharePublically: false, - }; -}; - -const IconContainer = () => { - return
Icon Container
; -}; - -export default IconContainer; - -/* - const queryClient = useQueryClient(); - const { bulkSelect } = useTypedSelector((state) => { - return state.feed; - }); - const dispatch = useDispatch(); - const [modalState, setModalState] = - React.useState(getInitialState); - - const { currentAction, isOpen, errorHandling, sharePublically, feedName } = - modalState; - - const getDefaultName = (bulkSelect: Feed[], action: string) => { - if (bulkSelect.length > 0) { - const description = - action === "delete" - ? "Deleting a feed is a permanent action. Click on confirm if you're sure" - : "Enter a name for your new feed (optional)"; - - let prefix = ""; - if (action === "merge") { - prefix = "Merge of "; - } else if (action === "") { - prefix = "archive-"; - } else { - prefix = ""; - } - - let newFeedName = ""; - if (action !== "share") { - const feedNames = bulkSelect.map((select: Feed) => select.data.name); - // truncate name of the merged feed(limit=100) - newFeedName = feedNames.toString().replace(/[, ]+/g, "_"); - newFeedName = prefix + newFeedName; - newFeedName = newFeedName.substring(0, 100); - if (action === "duplicate") { - if (bulkSelect.length > 1) { - newFeedName = "duplicate-"; - } else { - newFeedName = `duplicate-${bulkSelect[0].data.name}`; - } - } - } - - setModalState({ - ...modalState, - modalDescription: description, - feedName: newFeedName, - currentAction: action, - isOpen: true, - }); - } - }; - - const handleModalToggle = (value: boolean) => { - if (value === false) { - const newState = getInitialState(); - setModalState({ - ...newState, - }); - } else { - setModalState({ - ...modalState, - errorHandling: "Please select a feed for this operation", - isOpen: value, - }); - } - }; - - const handleNameInputChange = ( - _event: React.FormEvent, - value: string, - ) => { - setModalState({ - ...modalState, - feedName: value, - }); - }; - - function invalidateQueries() { - queryClient.invalidateQueries({ - queryKey: ["feeds"], - }); - - queryClient.invalidateQueries({ - queryKey: ["publicFeeds"], - }); - } - - const deleteFeedMutation = useMutation({ - mutationFn: async (bulkSelect: Feed[]) => { - for (const feed of bulkSelect) { - try { - await feed.delete(); - } catch (e: any) { - throw new Error(e.message); - } - } - }, - onSuccess: () => { - dispatch(setBulkSelect([], false)); - invalidateQueries(); - handleModalToggle(false); - }, - onError: (error: { message: string }) => { - handleError(error.message); - }, - }); - - const shareFeedMutation = useMutation({ - mutationFn: async (data: { - bulkSelect: Feed[]; - sharePublically: boolean; - feedName: string; - }) => { - const { bulkSelect, sharePublically, feedName } = data; - for (const feed of bulkSelect) { - try { - if (sharePublically) { - const currentState = feed.data.public; - - await feed.put({ - //@ts-ignore - public: !currentState, - }); - } else { - await feed.put({ - owner: feedName, - }); - } - } catch (error: any) { - throw new Error(error); - } - } - }, - onSuccess: () => { - dispatch(setBulkSelect([], false)); - invalidateQueries(); - handleModalToggle(false); - }, - onError: (error) => { - handleError(error.message); - }, - }); - - const handleDownloadMutation = useMutation({ - mutationFn: async (data: { - feedList: Feed[]; - feedName: string; - operation: string; - }) => { - const { feedList, feedName, operation } = data; - - const client = ChrisAPIClient.getClient(); - cujs.setClient(client); - const feedIdList = []; - const feedNames = []; - for (let i = 0; i < feedList.length; i++) { - const data = feedList[i].data; - feedIdList.push(data.id); - feedNames.push(data.name); - } - - // Truncate the name of the merged feed (limit=100) - let newFeedName = feedNames.toString().replace(/[, ]+/g, "_"); - let createdFeed: Feed | null = null; - - if (operation === "archive") { - newFeedName = `archive-${newFeedName}`; - newFeedName = newFeedName.substring(0, 100); - newFeedName = feedName === "" ? newFeedName : feedName; - - try { - createdFeed = await cujs.downloadMultipleFeeds( - feedIdList, - newFeedName, - ); - } catch (e: any) { - throw new Error(e); - // Not throwing the error here to allow handling in the onError callback - } - } - - if (operation === "merge") { - newFeedName = `merge-${newFeedName}`; - newFeedName = newFeedName.substring(0, 100); - newFeedName = feedName === "" ? newFeedName : feedName; - - try { - createdFeed = await cujs.mergeMultipleFeeds(feedIdList, newFeedName); - } catch (e: any) { - throw new Error(e); - } - } - - return createdFeed; // Return null if operation is neither "download" nor "merge" - }, - onSuccess: () => { - // Handle success actions if needed - invalidateQueries(); - handleModalToggle(false); - }, - onError: (error: Error) => { - handleError(error.message); - }, - }); - const handleDuplicateFeedMutation = useMutation({ - mutationFn: async (data: { feedList: Feed[]; feedName: string }) => { - const { feedList, feedName } = data; - const client = ChrisAPIClient.getClient(); - cujs.setClient(client); - for (let i = 0; i < feedList.length; i++) { - const feedIdList = []; - const data = feedList[i].data; - const newFeedName = feedName - ? `${feedName}-${data.name}` - : `duplicate-${data.name}`; - feedIdList.push(data.id); - try { - await cujs.mergeMultipleFeeds(feedIdList, newFeedName); - } catch (error: any) { - throw new Error(error); - } - } - }, - onSuccess: () => { - invalidateQueries(); - handleModalToggle(false); - }, - onError: (error) => { - handleError(error.message); - }, - }); - - const handleError = (errorMessage: string) => { - setModalState({ - ...modalState, - errorHandling: errorMessage, - }); - }; - - const handleSubmit = () => { - currentAction === "share" && - shareFeedMutation.mutate({ bulkSelect, sharePublically, feedName }); - currentAction === "delete" && deleteFeedMutation.mutate(bulkSelect); - currentAction === "archive" && - handleDownloadMutation.mutate({ - feedList: bulkSelect, - feedName, - operation: "archive", - }); - currentAction === "merge" && - handleDownloadMutation.mutate({ - feedList: bulkSelect, - feedName, - operation: "merge", - }); - currentAction === "duplicate" && - handleDuplicateFeedMutation.mutate({ feedList: bulkSelect, feedName }); - }; - - const isPending = - shareFeedMutation.isPending || - handleDownloadMutation.isPending || - handleDuplicateFeedMutation.isPending || - deleteFeedMutation.isPending; - - return ( - - {["archive", "merge", "duplicate", "share", "delete"].map((action) => { - return ( - - { - bulkSelect.length === 0 - ? handleModalToggle(true) - : getDefaultName(bulkSelect, action); - }} - /> - - ); - })} - - { - handleModalToggle(false); - }} - onSubmit={handleSubmit} - actions={[ - , - , - ]} - > - {!(modalState.currentAction === "delete") ? ( - - ) : ( - - )} - - - ); -}; - -export default IconContainer; - -const actionMap: { - [key: string]: ReactElement; -} = { - archive: , - merge: , - duplicate: , - share: , - delete: , -}; - -const ToolGroupContainer = ({ - action, - onChangeHandler, - icon, -}: { - action: string; - onChangeHandler: () => void; - icon: ReactElement; -}) => { - return ( - {capitalizeFirstLetter(action)} selected feeds} - > - {icon} - - } - onChange={onChangeHandler} - /> - ); -}; -*/ diff --git a/src/components/NewLibrary/components/Cart.tsx b/src/components/NewLibrary/components/Cart.tsx index 9fdd274c3..5bbb474f1 100644 --- a/src/components/NewLibrary/components/Cart.tsx +++ b/src/components/NewLibrary/components/Cart.tsx @@ -165,7 +165,7 @@ const Cart = () => { title={ } /> @@ -237,7 +237,7 @@ const Cart = () => { > } - title={} + title={} /> )} diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index dbf851de4..ea1cceafa 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -12,11 +12,11 @@ import { AddModal } from "./Operations"; export const FolderContextMenu = ({ children, - folderPath, + inValidateFolders, folderList, }: { children: React.ReactElement; - folderPath: string; + inValidateFolders: () => void; folderList?: FileBrowserFolderList; }) => { const { @@ -27,7 +27,7 @@ export const FolderContextMenu = ({ contextHolder, setUserErrors, setModalInfo, - } = useFolderOperations(folderPath, folderList); + } = useFolderOperations(inValidateFolders, "", folderList); const items: MenuProps["items"] = [ { key: "createFeed", label: "Create Feed", icon: }, diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index 58ee8f07c..2d19a8fe4 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -30,6 +30,7 @@ import useLongPress, { getBackgroundRowColor, } from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; +import { useQueryClient } from "@tanstack/react-query"; type Pagination = { totalCount: number; @@ -42,6 +43,7 @@ type ComponentProps = { date: string; onClick?: (e: React.MouseEvent) => void; onMouseDown?: () => void; + inValidateFolders?: () => void; onCheckboxChange?: (e: React.FormEvent) => void; onContextMenuClick?: (e: React.MouseEvent) => void; onNavigate: () => void; @@ -52,7 +54,7 @@ type ComponentProps = { const PresentationComponent: React.FC = ({ name, - computedPath, + inValidateFolders, date, onClick, onNavigate, @@ -64,7 +66,7 @@ const PresentationComponent: React.FC = ({ bgRow, }) => ( - + inValidateFolders?.()}> = ({ file, computedPath, }) => { + const queryClient = useQueryClient(); const { isDarkTheme } = useContext(ThemeContext); const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const handleDownloadMutation = useDownload(); @@ -225,6 +228,11 @@ export const SubFileCard: React.FC = ({ {contextHolder} { + queryClient.invalidateQueries({ + queryKey: ["library_folders", computedPath], + }); + }} onMouseDown={handlers.handleOnMouseDown} onCheckboxChange={handleCheckboxChange} onContextMenuClick={handleClick} diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index 0f3a666fb..494356a1d 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -16,6 +16,7 @@ import { ThemeContext } from "../../DarkTheme/useTheme"; import { FolderIcon } from "../../Icons"; import useLongPress, { getBackgroundRowColor } from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; +import { useQueryClient } from "@tanstack/react-query"; type Pagination = { totalCount: number; @@ -57,6 +58,7 @@ export const SubFolderCard = ({ computedPath: string; handleFolderClick: (path: string) => void; }) => { + const queryClient = useQueryClient(); const isDarkTheme = useContext(ThemeContext).isDarkTheme; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); @@ -73,7 +75,13 @@ export const SubFolderCard = ({ return ( - + { + queryClient.invalidateQueries({ + queryKey: ["library_folders", computedPath], + }); + }} + > { - console.log("E", e.detail); handleOnClick(e, folder, folder.data.path, "folder"); }} onContextMenu={(e) => { diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 7a57155e9..a943939e8 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -26,6 +26,8 @@ import { CodeBranchIcon, DeleteIcon, DownloadIcon, + DuplicateIcon, + MergeIcon, } from "../../Icons"; import { useFolderOperations } from "../utils/useOperations"; @@ -100,15 +102,19 @@ const items = [ { key: "newFolder", label: "New Folder" }, { key: "fileUpload", label: "File Upload" }, { key: "folderUpload", label: "Folder Upload" }, - { key: "createGroup", label: "Create a Group" }, ]; const Operations = React.forwardRef( ( { - folderList, + inValidateFolders, computedPath, - }: { folderList?: FileBrowserFolderList; computedPath: string }, + folderList, + }: { + inValidateFolders: () => void; + computedPath?: string; + folderList?: FileBrowserFolderList; + }, ref, ) => { const dispatch = useDispatch(); @@ -124,7 +130,7 @@ const Operations = React.forwardRef( contextHolder, setUserErrors, setModalInfo, - } = useFolderOperations(computedPath, folderList); + } = useFolderOperations(inValidateFolders, computedPath, folderList); useImperativeHandle(ref, () => ({ triggerFileUpload: () => { @@ -201,6 +207,26 @@ const Operations = React.forwardRef( Anonymize + + + + + + )} - { - // This code needs to be revisited -
- } +
) : ( diff --git a/src/components/NewLibrary/utils/useDeletePayload.tsx b/src/components/NewLibrary/utils/useDeletePayload.tsx index 529c86ba7..2485f129f 100644 --- a/src/components/NewLibrary/utils/useDeletePayload.tsx +++ b/src/components/NewLibrary/utils/useDeletePayload.tsx @@ -9,18 +9,10 @@ import { ErrorAlert } from "../../Common"; type DeletionErrors = { path: string; message: string }[]; -const useDeletePayload = (computedPath: string, api: any) => { - const queryClient = useQueryClient(); +const useDeletePayload = (inValidateFolders: () => void, api: any) => { const dispatch = useDispatch(); const [deletionErrors, setDeletionErrors] = useState([]); const [notificationKey, setNotificationKey] = useState(null); - - const invalidateFolders = async () => { - await queryClient.invalidateQueries({ - queryKey: ["library_folders", computedPath], - }); - }; - const handleDelete = async (paths: SelectionPayload[]) => { const errors: DeletionErrors = []; const successfulPaths: string[] = []; @@ -47,7 +39,7 @@ const useDeletePayload = (computedPath: string, api: any) => { }), ); - await invalidateFolders(); + inValidateFolders(); successfulPaths.forEach((path) => dispatch(clearSelectFolder(path))); return errors.length > 0 ? errors : null; diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index 56ed7987b..22ca118b3 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -7,6 +7,7 @@ import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../../api/chrisapiclient"; import { MainRouterContext } from "../../../routes"; import { + createFeed, setToggleCart, startAnonymize, startDownload, @@ -16,10 +17,10 @@ import { useTypedSelector } from "../../../store/hooks"; import useDeletePayload from "../utils/useDeletePayload"; export const useFolderOperations = ( - computedPath: string, + inValidateFolders: () => void, + computedPath?: string, // This path is passed to for file upload and folder uploads in the library folderList?: FileBrowserFolderList, ) => { - const queryClient = useQueryClient(); const router = useContext(MainRouterContext); const { selectedPaths } = useTypedSelector((state) => state.cart); const username = useTypedSelector((state) => state.user.username); @@ -30,13 +31,7 @@ export const useFolderOperations = ( const fileInput = useRef(null); const [api, contextHolder] = notification.useNotification(); - const deleteMutation = useDeletePayload(computedPath, api); - - const invalidateFolders = async () => { - await queryClient.invalidateQueries({ - queryKey: ["library_folders", computedPath], - }); - }; + const deleteMutation = useDeletePayload(inValidateFolders, api); const handleFileChange = async (e: React.ChangeEvent) => { const fileList = e.target.files || []; @@ -47,17 +42,23 @@ export const useFolderOperations = ( if (fileInput.current) { fileInput.current.value = ""; } - await invalidateFolders(); + inValidateFolders(); }; const handleFolderChange = async (e: React.ChangeEvent) => { const fileList = e.target.files || []; const files = Array.from(fileList); - dispatch(startUpload({ files, isFolder: true, currentPath: computedPath })); + dispatch( + startUpload({ + files, + isFolder: true, + currentPath: computedPath as string, + }), + ); if (folderInput.current) { folderInput.current.value = ""; } - await invalidateFolders(); + inValidateFolders(); }; const handleModalSubmit = async (inputValue: string) => { @@ -69,7 +70,7 @@ export const useFolderOperations = ( const finalPath = `${computedPath}/${inputValue}`; try { await folderList?.post({ path: finalPath }); - await invalidateFolders(); + inValidateFolders(); } catch (error: any) { const path = error?.response?.data?.path; const message = !isEmpty(path) ? path[0] : "Failed to create a folder."; @@ -83,6 +84,14 @@ export const useFolderOperations = ( mutationFn: (inputValue: string) => handleModalSubmit(inputValue), }); + const handleMerge = () => { + dispatch(createFeed({ payload: selectedPaths, type: "Merge Feed" })); + }; + + const handleDuplicate = () => { + dispatch(createFeed({ payload: selectedPaths, type: "Duplicate Feed" })); + }; + const handleOperations = (key: string) => { switch (key) { case "createFeed": { @@ -99,6 +108,7 @@ export const useFolderOperations = ( username: username as string, }), ); + inValidateFolders(); break; case "anonymize": dispatch(setToggleCart()); @@ -124,6 +134,14 @@ export const useFolderOperations = ( case "createGroup": setModalInfo({ isOpen: true, type: "group" }); break; + case "merge": { + handleMerge(); + break; + } + case "duplicate": { + handleDuplicate(); + break; + } } }; diff --git a/src/store/cart/actions.ts b/src/store/cart/actions.ts index e4379f072..def5a9c15 100644 --- a/src/store/cart/actions.ts +++ b/src/store/cart/actions.ts @@ -51,6 +51,11 @@ export const startUpload = (payload: UploadPayload) => export const startAnonymize = (payload: OperationPayload) => action(ICartActionTypes.START_ANONYMIZE, payload); +export const createFeed = (payload: { + payload: SelectionPayload[]; + type: string; +}) => action(ICartActionTypes.CREATE_FEED, payload); + export const setFileUploadStatus = (payload: { step: string; fileName: string; diff --git a/src/store/cart/saga.ts b/src/store/cart/saga.ts index 7a98a5bc4..46321f7d5 100644 --- a/src/store/cart/saga.ts +++ b/src/store/cart/saga.ts @@ -62,6 +62,30 @@ const isFileBrowserFolder = (payload: any): payload is FileBrowserFolder => { return (payload as FileBrowserFolder).data?.path !== undefined; }; +function* createFeed(path: string[], feedName: string) { + const client = ChrisAPIClient.getClient(); + const dircopy: Plugin | undefined = yield getPlugin("pl-dircopy") as Promise< + Plugin | undefined + >; + if (!dircopy) { + throw new Error("pl-dircopy was not registered"); + } + const createdInstance: PluginInstance = yield client.createPluginInstance( + dircopy.data.id, + //@ts-ignore + { dir: path.length > 0 ? path.join(",") : path[0] }, + ) as Promise; + if (!createdInstance) { + throw new Error("Failed to create an instance of pl-dircopy"); + } + const feed = (yield createdInstance.getFeed()) as Feed; + if (!feed) { + throw new Error("Failed to create a Feed"); + } + yield feed.put({ name: feedName }); + return { createdInstance, feed }; +} + function* downloadFolder( payload: FileBrowserFolder | FileBrowserFolderFile, username: string, @@ -88,108 +112,80 @@ function* downloadFolder( `Failed to find the pipeline. Is this '${pipelineName}' registered?`, ); } - yield setStatus(type, id, "processing", path); - const pipelines = pipelineList.getItems() as unknown as Pipeline[]; const currentPipeline = pipelines[0]; + try { + const feedName = + pipelineType === "Download Pipeline" + ? `Library Download for ${folderNameForFeed}` + : `Library Anonymize for ${folderNameForFeed}`; + const { feed, createdInstance } = yield call(createFeed, [path], feedName); + // Set Status + yield setStatus(type, id, "processing", path, "", feed); + // Add a workflow + const workflow: Workflow = yield client.createWorkflow( + currentPipeline.data.id, + //@ts-ignore + { + previous_plugin_inst_id: createdInstance.data.id, + }, + ); - const dircopy: Plugin | undefined = yield getPlugin("pl-dircopy") as Promise< - Plugin | undefined - >; - - if (!dircopy) { - throw new Error("pl-dircopy was not registered"); - } - - const createdInstance: PluginInstance = yield client.createPluginInstance( - dircopy.data.id, - //@ts-ignore - { dir: path }, - ) as Promise; - - if (!createdInstance) { - throw new Error("Failed to create an instance of pl-dircopy"); - } - - const feed = (yield createdInstance.getFeed()) as Feed; - - if (!feed) { - throw new Error("Failed to create a Feed"); - } - - const feedName = - pipelineType === "Download Pipeline" - ? `Library Download for ${folderNameForFeed}` - : `Library Anonymize for ${folderNameForFeed}`; - - yield feed.put({ name: feedName }); - - // Set Status - yield setStatus(type, id, "processing", path, "", feed); - - // Add a workflow - const workflow: Workflow = yield client.createWorkflow( - currentPipeline.data.id, - //@ts-ignore - { - previous_plugin_inst_id: createdInstance.data.id, - }, - ); - - if (!workflow) { - throw new Error("Failed to create a workflow"); - } - - const pluginInstancesList: PluginInstanceList = - yield workflow.getPluginInstances(); - const pluginInstances = pluginInstancesList.getItems() as PluginInstance[]; - if (pluginInstances.length > 0) { - const zipInstance = pluginInstances[0]; - let filePath = ""; - if (pipelineType === "Download Pipeline") { - filePath = `home/${username}/feeds/feed_${feed.data.id}/pl-dircopy_${createdInstance.data.id}/pl-pfdorun_${zipInstance.data.id}/data`; - } else { - const headerEditInstance = pluginInstances[1]; - filePath = `home/${username}/feeds/feed_${feed.data.id}/pl-dircopy_${createdInstance.data.id}/pl-dicom_headeredit_${headerEditInstance.data.id}/pl-pfdorun_${zipInstance.data.id}/data`; + if (!workflow) { + throw new Error("Failed to create a workflow"); } - - const statusResource: ItemResource = yield zipInstance.get(); - let status = statusResource.data.status; - - while (status !== "finishedSuccessfully") { - yield new Promise((resolve) => setTimeout(resolve, 5000)); // Polling every 5 seconds - const statusReq: ItemResource = yield zipInstance.get(); - status = statusReq.data.status; - - if (status === "finishedWithError" || status === "cancelled") { - throw new Error("Download failed. Please try again..."); + const pluginInstancesList: PluginInstanceList = + yield workflow.getPluginInstances(); + const pluginInstances = pluginInstancesList.getItems() as PluginInstance[]; + if (pluginInstances.length > 0) { + const zipInstance = pluginInstances[0]; + let filePath = ""; + if (pipelineType === "Download Pipeline") { + filePath = `home/${username}/feeds/feed_${feed.data.id}/pl-dircopy_${createdInstance.data.id}/pl-pfdorun_${zipInstance.data.id}/data`; + } else { + const headerEditInstance = pluginInstances[1]; + filePath = `home/${username}/feeds/feed_${feed.data.id}/pl-dircopy_${createdInstance.data.id}/pl-dicom_headeredit_${headerEditInstance.data.id}/pl-pfdorun_${zipInstance.data.id}/data`; } - } - - if (status === "finishedSuccessfully") { - const folderList: FileBrowserFolderFileList = - yield client.getFileBrowserFolders({ path: filePath }); - if (!folderList) { - throw new Error(`Failed to find the files under this path ${filePath}`); + const statusResource: ItemResource = yield zipInstance.get(); + let status = statusResource.data.status; + while (status !== "finishedSuccessfully") { + yield new Promise((resolve) => setTimeout(resolve, 5000)); // Polling every 5 seconds + const statusReq: ItemResource = yield zipInstance.get(); + status = statusReq.data.status; + if (status === "finishedWithError" || status === "cancelled") { + throw new Error("Download failed. Please try again..."); + } } + if (status === "finishedSuccessfully") { + const folderList: FileBrowserFolderFileList = + yield client.getFileBrowserFolders({ path: filePath }); + if (!folderList) { + throw new Error( + `Failed to find the files under this path ${filePath}`, + ); + } - const folders = folderList.getItems(); - - if (folders && folders.length > 0) { - const folder = folders[0]; - const files: FileBrowserFolderFileList = yield folder.getFiles(); - const fileItems = files.getItems() as FileBrowserFolderFile[]; - if (!fileItems) { - throw new Error("Failed to find the zip file"); + const folders = folderList.getItems(); + if (folders && folders.length > 0) { + const folder = folders[0]; + const files: FileBrowserFolderFileList = yield folder.getFiles(); + const fileItems = files.getItems() as FileBrowserFolderFile[]; + if (!fileItems) { + throw new Error("Failed to find the zip file"); + } + const fileToZip = fileItems[0]; + yield downloadFile(fileToZip); + } else { + throw new Error(`Failed to find a folder for this path: ${filePath}`); } - const fileToZip = fileItems[0]; - yield downloadFile(fileToZip); - } else { - throw new Error(`Failed to find a folder for this path: ${filePath}`); } } + } catch (e) { + if (e instanceof Error) { + throw new Error(e.message); + } } } @@ -358,7 +354,6 @@ function* uploadFileBatch( // We need to cancel the folder upload manually since it will upload other files in the list. // If it's an upload path error, all the files in the list are going to be errored so it's safe to cancel the entire upload. isFolder && folderController.abort(); - if (!isFolder) { // No need to manually cancel the upload for a single file as the request will fail. yield put( @@ -372,7 +367,6 @@ function* uploadFileBatch( }), ); } - break; } } @@ -444,6 +438,15 @@ function* handleAnonymize(action: IActionTypeParam) { } } +function* handleCreateFeed(action: IActionTypeParam) { + const { payload, type } = action.payload as { + payload: SelectionPayload[]; + type: string; + }; + const paths = payload.map((data) => data.path); + yield call(createFeed, paths, type); +} + function* watchDownload() { yield takeEvery(ICartActionTypes.START_DOWNLOAD, handleDownload); } @@ -456,6 +459,10 @@ function* watchAnonymize() { yield takeEvery(ICartActionTypes.START_ANONYMIZE, handleAnonymize); } +function* watchCreateFeed() { + yield takeEvery(ICartActionTypes.CREATE_FEED, handleCreateFeed); +} + function* watchCancelUpload() { yield takeEvery(ICartActionTypes.CANCEL_UPLOAD, function* (action: any) { const { id: fileName, type } = action.payload; @@ -484,5 +491,6 @@ export function* cartSaga() { fork(watchUpload), fork(watchAnonymize), fork(watchCancelUpload), + fork(watchCreateFeed), ]); } diff --git a/src/store/cart/types.ts b/src/store/cart/types.ts index b8ab20c18..0d721e16e 100644 --- a/src/store/cart/types.ts +++ b/src/store/cart/types.ts @@ -75,6 +75,7 @@ export const ICartActionTypes = keyMirror({ CLEAR_UPLOAD_STATE: null, SET_TOGGLE_CART: null, START_DOWNLOAD: null, + CREATE_FEED: null, SET_FILE_DOWNLOAD_STATUS: null, SET_FOLDER_DOWNLOAD_STATUS: null, START_UPLOAD: null, From 041daa764cb4cf7246973d64c1b829d13ee8510b Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 8 Aug 2024 16:12:15 -0400 Subject: [PATCH 094/337] feat: Cleanup --- src/components/IconContainer/index.tsx | 0 1 file changed, 0 insertions(+), 0 deletions(-) delete mode 100644 src/components/IconContainer/index.tsx diff --git a/src/components/IconContainer/index.tsx b/src/components/IconContainer/index.tsx deleted file mode 100644 index e69de29bb..000000000 From a652a75386f6ab733ef6d2626ea35301055e0493 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 9 Aug 2024 15:15:17 -0400 Subject: [PATCH 095/337] feat: Implement copy and merge for folders and feeds. Remove the cujs dependency --- package-lock.json | 27 -- package.json | 1 - src/components/Common/index.tsx | 7 +- src/components/Feeds/FeedListView.tsx | 30 +- src/components/Feeds/utilties.ts | 129 +++++- src/components/Icons/index.tsx | 8 +- .../NewLibrary/components/ContextMenu.tsx | 18 +- .../NewLibrary/components/FolderCard.tsx | 87 ++-- .../NewLibrary/components/Operations.tsx | 375 +++++++++--------- .../NewLibrary/utils/useFeedOperations.tsx | 119 ++++++ .../NewLibrary/utils/useOperations.tsx | 12 +- src/store/cart/actions.ts | 7 +- src/store/cart/saga.ts | 32 +- src/store/cart/types.ts | 8 + src/types/index.d.ts | 1 - 15 files changed, 545 insertions(+), 316 deletions(-) create mode 100644 src/components/NewLibrary/utils/useFeedOperations.tsx diff --git a/package-lock.json b/package-lock.json index a7da9872d..fedd0e788 100644 --- a/package-lock.json +++ b/package-lock.json @@ -25,7 +25,6 @@ "@types/d3-zoom": "^3.0.8", "antd": "^5.19.2", "axios": "^1.7.2", - "chris-utility": "^1.1.6", "d3-hierarchy": "^1.1.9", "d3-selection": "^3.0.0", "d3-shape": "^3.2.0", @@ -3578,17 +3577,6 @@ "node": ">= 16" } }, - "node_modules/chris-utility": { - "version": "1.1.6", - "resolved": "https://registry.npmjs.org/chris-utility/-/chris-utility-1.1.6.tgz", - "integrity": "sha512-FH3cJ82yWF+ugUH6Gb9HUj3Uy6GBurULZUuHopO65Z43Zzm39kyTpQiHNez3sj+MiCfqHcPA485jOtYPsofq6g==", - "license": "ISC", - "dependencies": { - "@fnndsc/chrisapi": "^1.9.7", - "file-saver": "^2.0.5", - "webpack-merge": "^4.2.2" - } - }, "node_modules/cipher-base": { "version": "1.0.4", "resolved": "https://registry.npmjs.org/cipher-base/-/cipher-base-1.0.4.tgz", @@ -4814,12 +4802,6 @@ "integrity": "sha512-0Zz1jOzJWERhyhsimS54VTqOteCNwRtIlh8isdL0AXLo0g7xNTfTL7oWrkmCnPhZGocKIkWHBistBrrpoNH3aw==", "license": "MIT" }, - "node_modules/file-saver": { - "version": "2.0.5", - "resolved": "https://registry.npmjs.org/file-saver/-/file-saver-2.0.5.tgz", - "integrity": "sha512-P9bmyZ3h/PRG+Nzga+rbdI4OEpNDzAVyy74uVO9ATgzLK6VtAsYybF/+TOCvrc0MO793d6+42lLyZTw7/ArVzA==", - "license": "MIT" - }, "node_modules/file-selector": { "version": "0.6.0", "resolved": "https://registry.npmjs.org/file-selector/-/file-selector-0.6.0.tgz", @@ -12872,15 +12854,6 @@ "node": ">=12" } }, - "node_modules/webpack-merge": { - "version": "4.2.2", - "resolved": "https://registry.npmjs.org/webpack-merge/-/webpack-merge-4.2.2.tgz", - "integrity": "sha512-TUE1UGoTX2Cd42j3krGYqObZbOD+xF7u28WB7tfUordytSjbWTIjK/8V0amkBfTYN4/pB/GIDlJZZ657BGG19g==", - "license": "MIT", - "dependencies": { - "lodash": "^4.17.15" - } - }, "node_modules/webworker-promise": { "version": "0.5.0", "resolved": "https://registry.npmjs.org/webworker-promise/-/webworker-promise-0.5.0.tgz", diff --git a/package.json b/package.json index a34b9b518..71485d1ac 100644 --- a/package.json +++ b/package.json @@ -41,7 +41,6 @@ "@types/d3-zoom": "^3.0.8", "antd": "^5.19.2", "axios": "^1.7.2", - "chris-utility": "^1.1.6", "d3-hierarchy": "^1.1.9", "d3-selection": "^3.0.0", "d3-shape": "^3.2.0", diff --git a/src/components/Common/index.tsx b/src/components/Common/index.tsx index 9edf14287..7f6241372 100644 --- a/src/components/Common/index.tsx +++ b/src/components/Common/index.tsx @@ -179,6 +179,7 @@ type AllProps = { onSearch: (search: string, searchType: string) => void; search?: string; searchType?: string; + customStyle?: React.CSSProperties; }; const FeedsQueryTypes: any = { @@ -208,7 +209,7 @@ const FeedsQueryTypes: any = { export const DataTableToolbar: React.FunctionComponent = ( props: AllProps, ) => { - const { searchType, search } = props; + const { searchType, search, customStyle } = props; const [value, setValue] = useState(search ? search : ""); const [dropdownValue, setDropdownValue] = React.useState( searchType?.toUpperCase() && FeedsQueryTypes[searchType] @@ -254,7 +255,7 @@ export const DataTableToolbar: React.FunctionComponent = ( style={{ display: "flex", justifyContent: "space-between", - padding: "0.8rem 0rem", + ...customStyle, }} >
@@ -279,7 +280,7 @@ export const DataTableToolbar: React.FunctionComponent = ( } aria-label="search" onChange={(_event, value: string) => { diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 346af808b..ee17a49bf 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -18,7 +18,6 @@ import { import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; import { useQuery, useQueryClient } from "@tanstack/react-query"; import { Tooltip, Typography } from "antd"; -import { cujs } from "chris-utility"; import { format } from "date-fns"; import type React from "react"; import { useContext, useEffect, useState } from "react"; @@ -37,7 +36,11 @@ import useLongPress from "../NewLibrary/utils/longpress"; import { PipelineProvider } from "../PipelinesCopy/context"; import WrapperConnect from "../Wrapper"; import { useSearchQueryParams } from "./usePaginate"; -import { fetchFeeds, fetchPublicFeeds } from "./utilties"; +import { + fetchFeeds, + fetchPublicFeeds, + getPluginInstanceDetails, +} from "./utilties"; const { Paragraph } = Typography; @@ -76,7 +79,6 @@ const TableSelectable: React.FC = () => { enabled: type === "public", refetchOnMount: true, }); - const feedsToDisplay = type === "private" ? data?.feeds || [] : publicFeeds?.feeds || []; @@ -204,14 +206,21 @@ const TableSelectable: React.FC = () => { isSelected={type === "public"} onChange={onExampleTypeChange} /> + - - {loadingFeedState ? ( ) : feedsToDisplay.length > 0 ? ( @@ -282,8 +291,7 @@ const TableRow: React.FC = ({ queryKey: ["feedResources", feed], queryFn: async () => { try { - const res = await cujs.getPluginInstanceDetails(feed); - + const res = await getPluginInstanceDetails(feed); if (res.progress === 100 || res.error === true) { setIntervalMs(0); } diff --git a/src/components/Feeds/utilties.ts b/src/components/Feeds/utilties.ts index f47559ce7..0ab8672ac 100644 --- a/src/components/Feeds/utilties.ts +++ b/src/components/Feeds/utilties.ts @@ -2,7 +2,13 @@ import type { DrawerPayloadType, IDrawerState } from "../../store/drawer/types"; import { setDrawerState } from "../../store/drawer/actions"; import type { Dispatch } from "redux"; import ChrisAPIClient from "../../api/chrisapiclient"; -import type { Feed, PublicFeedList, FeedList } from "@fnndsc/chrisapi"; +import type { + Feed, + PublicFeedList, + FeedList, + PluginInstance, +} from "@fnndsc/chrisapi"; +import { fetchResource } from "../../api/common"; export const handleDrawerActions = ( actionType: string, @@ -114,6 +120,7 @@ export async function fetchAuthenticatedFeed(id?: string) { } return feed; } catch (error) { + // biome-ignore lint/complexity/noUselessCatch: throw error; } } @@ -131,6 +138,126 @@ export async function fetchPublicFeed(id?: string) { } throw new Error("Failed to fetch this feed..."); } catch (error) { + // biome-ignore lint/complexity/noUselessCatch: throw error; } } + +type PluginInstanceStatus = + | "cancelled" + | "finishedWithError" + | "waiting" + | "scheduled" + | "started" + | "registeringFiles" + | "finishedSuccessfully"; + +interface PluginInstanceDetails { + size: string; + progress: number; + time: string; + error: boolean; + feedProgressText: string; +} + +const LOOKUP: Record = { + cancelled: 0, + finishedWithError: 0, + waiting: 1, + scheduled: 2, + started: 3, + registeringFiles: 4, + finishedSuccessfully: 5, +}; + +export const getPluginInstanceDetails = async ( + feed: Feed, +): Promise => { + const details: PluginInstanceDetails = { + size: "", + progress: 0, + time: "", + error: false, + feedProgressText: "", + }; + + let totalSize = 0; + let totalRunTime = 0; + let error = false; + let finishedCount = 0; + let errorCount = 0; + + const params = { limit: 10000, offset: 0 }; + const fn = feed.getPluginInstances; + const boundFn = fn.bind(feed); + const { resource: pluginInstances }: { resource: PluginInstance[] } = + await fetchResource(params, boundFn); + + const totalMilestones = pluginInstances.length * LOOKUP.finishedSuccessfully; + let completedMilestones = 0; + + for (const pluginInstance of pluginInstances) { + const startTime = new Date(pluginInstance.data.start_date).getTime(); + const endTime = new Date(pluginInstance.data.end_date).getTime(); + + totalRunTime += endTime - startTime; + totalSize += pluginInstance.data.size; + + const statusMilestone = + LOOKUP[pluginInstance.data.status as PluginInstanceStatus]; + completedMilestones += statusMilestone; + + if ( + statusMilestone === LOOKUP.cancelled || + statusMilestone === LOOKUP.finishedWithError + ) { + error = true; + errorCount += 1; + continue; // Skip further checks for this instance + } + + if (pluginInstance.data.status === "finishedSuccessfully") { + finishedCount += 1; + } + } + + const feedProgressText = error + ? `${errorCount}/${pluginInstances.length} jobs failed` + : `${finishedCount}/${pluginInstances.length} jobs completed`; + + const progressPercentage = (completedMilestones / totalMilestones) * 100; + + details.size = formatBytes(totalSize, 0); + details.progress = Math.floor(progressPercentage); + details.time = convertMsToHM(totalRunTime); + details.error = error; + details.feedProgressText = feedProgressText; + + return details; +}; +export const convertMsToHM = (milliseconds: number): string => { + let seconds = Math.floor(milliseconds / 1000); + let minutes = Math.floor(seconds / 60); + const hours = Math.floor(minutes / 60); + + seconds = seconds % 60; + minutes = minutes % 60; + + return `${padTo2Digits(hours)}:${padTo2Digits(minutes)}:${padTo2Digits(seconds)}`; +}; + +export const padTo2Digits = (num: number): string => { + return num.toString().padStart(2, "0"); +}; + +export const formatBytes = (bytes: number, decimals = 2): string => { + if (bytes === 0) return "0 B"; + + const k = 1024; + const dm = decimals < 0 ? 0 : decimals; + const sizes = ["B", "kB", "MB", "GB", "TB", "PB", "EB", "ZB", "YB"]; + + const i = Math.floor(Math.log(bytes) / Math.log(k)); + + return `${Number.parseFloat((bytes / k ** i).toFixed(dm))} ${sizes[i]}`; +}; diff --git a/src/components/Icons/index.tsx b/src/components/Icons/index.tsx index 58e7e9a17..644aa52c7 100644 --- a/src/components/Icons/index.tsx +++ b/src/components/Icons/index.tsx @@ -50,11 +50,11 @@ const CartIcon = ({ ); }; -const MergeIcon = () => { +const MergeIcon = ({ className }: { className?: string }) => { return ( @@ -92,11 +92,11 @@ const ShareIcon = () => { ); }; -const DuplicateIcon = () => { +const DuplicateIcon = ({ className }: { className?: string }) => { return ( diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index ea1cceafa..76168d147 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -6,19 +6,21 @@ import { CodeBranchIcon, DeleteIcon, DownloadIcon, + DuplicateIcon, + MergeIcon, } from "../../Icons"; import { useFolderOperations } from "../utils/useOperations"; import { AddModal } from "./Operations"; -export const FolderContextMenu = ({ - children, - inValidateFolders, - folderList, -}: { +interface ContextMenuProps { children: React.ReactElement; + computedPath?: string; inValidateFolders: () => void; folderList?: FileBrowserFolderList; -}) => { +} + +export const FolderContextMenu = (props: ContextMenuProps) => { + const { children, inValidateFolders, folderList, computedPath } = props; const { modalInfo, userError, @@ -27,12 +29,14 @@ export const FolderContextMenu = ({ contextHolder, setUserErrors, setModalInfo, - } = useFolderOperations(inValidateFolders, "", folderList); + } = useFolderOperations(inValidateFolders, computedPath, folderList); const items: MenuProps["items"] = [ { key: "createFeed", label: "Create Feed", icon: }, { key: "download", label: "Download", icon: }, { key: "anonymize", label: "Anonymize", icon: }, + { key: "merge", label: "Merge", icon: }, + { key: "duplicate", label: "Copy", icon: }, { key: "delete", label: "Delete", icon: }, ]; diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index 494356a1d..d243ddcf5 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -8,15 +8,16 @@ import { Split, SplitItem, } from "@patternfly/react-core"; +import { useQuery, useQueryClient } from "@tanstack/react-query"; import { useContext } from "react"; import { Fragment } from "react/jsx-runtime"; +import ChrisAPIClient from "../../../api/chrisapiclient"; import { elipses } from "../../../api/common"; import { useTypedSelector } from "../../../store/hooks"; import { ThemeContext } from "../../DarkTheme/useTheme"; import { FolderIcon } from "../../Icons"; import useLongPress, { getBackgroundRowColor } from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; -import { useQueryClient } from "@tanstack/react-query"; type Pagination = { totalCount: number; @@ -49,32 +50,53 @@ export const FolderCard = ({ ); }; -export const SubFolderCard = ({ - folder, - computedPath, - handleFolderClick, -}: { +interface SubFolderCardProps { folder: FileBrowserFolder; computedPath: string; handleFolderClick: (path: string) => void; -}) => { +} + +export const SubFolderCard: React.FC = (props) => { + const { folder, computedPath, handleFolderClick } = props; const queryClient = useQueryClient(); const isDarkTheme = useContext(ThemeContext).isDarkTheme; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); const { handleOnClick, handleOnMouseDown, handleCheckboxChange } = handlers; - const folderSplitList = folder.data.path.split("/"); - const pathName = folderSplitList[folderSplitList.length - 1]; + + const folderPathParts = folder.data.path.split("/"); + const pathName = folderPathParts[folderPathParts.length - 1]; const folderName = computedPath === "/" ? folder.data.path : pathName; - const creation_date = folder.data.creation_date; - const isSelected = - selectedPaths.length > 0 && - selectedPaths.some((payload) => payload.path === folder.data.path); + const creationDate = folder.data.creation_date; + const isSelected = selectedPaths.some( + (payload) => payload.path === folder.data.path, + ); const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); + // When users create an analysis, they have a specific name in mind. Showing the user the underlying + // folder path (e.g., feed_98) can be confusing if the analysis is titled 'Freesurfer Analysis'. + // Therefore, we perform an additional fetch to display the feed folders with their analysis titles. + + const feedMatches = folderName.match(/feed_(\d+)/); + const { data, isLoading } = useQuery({ + queryKey: ["AssociatedFeed", folder.data.path], + queryFn: async () => { + const id = feedMatches ? feedMatches[1] : null; + + if (id) { + const client = ChrisAPIClient.getClient(); + const feed = await client.getFeed(Number(id)); + if (!feed) throw new Error("Failed to fetch the feed"); + return feed.data.name; + } + return null; + }, + enabled: feedMatches?.length > 0, + }); + return ( - + { queryClient.invalidateQueries({ @@ -83,24 +105,17 @@ export const SubFolderCard = ({ }} > { - handleOnClick(e, folder, folder.data.path, "folder"); - }} - onContextMenu={(e) => { - handleOnClick(e, folder, folder.data.path, "folder"); - }} - onMouseDown={() => { - handleOnMouseDown(); - }} + onClick={(e) => handleOnClick(e, folder, folder.data.path, "folder")} + onContextMenu={(e) => + handleOnClick(e, folder, folder.data.path, "folder") + } + onMouseDown={handleOnMouseDown} isRounded > { - e.stopPropagation(); - }} - onChange={(e) => { - handleCheckboxChange(e, folder.data.path, folder, "folder"); - }} + onClick={(e) => e.stopPropagation()} + onChange={(e) => + handleCheckboxChange(e, folder.data.path, folder, "folder") + } /> ), }} @@ -133,9 +146,13 @@ export const SubFolderCard = ({ variant="link" style={{ padding: 0 }} > - {elipses(folderName, 40)} + {!data && !isLoading + ? elipses(folderName, 40) + : data + ? elipses(data, 40) + : "Fetching..."} -
{new Date(creation_date).toDateString()}
+
{new Date(creationDate).toDateString()}
diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index a943939e8..50d4e12e7 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -30,15 +30,9 @@ import { MergeIcon, } from "../../Icons"; import { useFolderOperations } from "../utils/useOperations"; +import useFeedOperations from "../utils/useFeedOperations"; -export const AddModal = ({ - isOpen, - onClose, - onSubmit, - modalTitle, - inputLabel, - indicators, -}: { +interface AddModalProps { isOpen: boolean; onClose: () => void; onSubmit: (inputValue: string) => void; @@ -49,7 +43,18 @@ export const AddModal = ({ isError: boolean; error: DefaultError | null; }; -}) => { +} + +interface OperationProps { + inValidateFolders: () => void; + computedPath?: string; + folderList?: FileBrowserFolderList; + customStyle?: React.CSSProperties; +} + +export const AddModal = (props: AddModalProps) => { + const { isOpen, onClose, onSubmit, modalTitle, inputLabel, indicators } = + props; const [inputValue, setInputValue] = useState(""); const handleClose = () => { @@ -104,200 +109,178 @@ const items = [ { key: "folderUpload", label: "Folder Upload" }, ]; -const Operations = React.forwardRef( - ( - { - inValidateFolders, - computedPath, - folderList, - }: { - inValidateFolders: () => void; - computedPath?: string; - folderList?: FileBrowserFolderList; - }, - ref, - ) => { - const dispatch = useDispatch(); - const { - modalInfo, - userError, - folderInput, - fileInput, - handleFileChange, - handleFolderChange, - handleModalSubmitMutation, - handleOperations, - contextHolder, - setUserErrors, - setModalInfo, - } = useFolderOperations(inValidateFolders, computedPath, folderList); +const Operations = React.forwardRef((props: OperationProps, ref) => { + const { inValidateFolders, computedPath, folderList, customStyle } = props; + const dispatch = useDispatch(); + const { + modalInfo, + userError, + folderInput, + fileInput, + handleFileChange, + handleFolderChange, + handleModalSubmitMutation, + handleOperations, + contextHolder, + setUserErrors, + setModalInfo, + } = useFolderOperations(inValidateFolders, computedPath, folderList); - useImperativeHandle(ref, () => ({ - triggerFileUpload: () => { - fileInput.current?.click(); - }, - triggerFolderUpload: () => { - folderInput.current?.click(); - }, - })); + useImperativeHandle(ref, () => ({ + triggerFileUpload: () => { + fileInput.current?.click(); + }, + triggerFolderUpload: () => { + folderInput.current?.click(); + }, + })); - const { selectedPaths } = useTypedSelector((state) => state.cart); - const selectedPathsCount = selectedPaths.length; + const { selectedPaths } = useTypedSelector((state) => state.cart); + const selectedPathsCount = selectedPaths.length; - const toolbarItems = ( - - {contextHolder} - - { - handleOperations(info.key); - }, - }} + const toolbarItems = ( + + {contextHolder} + + { + handleOperations(info.key); + }, + }} + > + + + {userError && ( + setUserErrors("")} + /> + )} + + {selectedPathsCount > 0 && ( + <> + - - {userError && ( - setUserErrors("")} + onClick={() => handleOperations("createFeed")} + variant="tertiary" /> - )} - - {selectedPathsCount > 0 && ( - <> - - - - - - - - - - - - - - - - - - - - - {selectedPaths.map((selection) => ( - - dispatch(removeIndividualSelection(selection)) - } - > - {getFileName(selection.path)} - - ))} - - - - )} - - ); + + + - - + + + + + + + + + + + + + + + + + +
IDAnalysisCreatedCreatorRun TimeSizeStatus
+ + + } + titleText="No results found" + headingLevel="h2" + /> + + +
); -}; +} const LoadingTable = () => { return ( diff --git a/src/components/NewLibrary/components/Cart.tsx b/src/components/NewLibrary/components/Cart.tsx index 5bbb474f1..179cef4d6 100644 --- a/src/components/NewLibrary/components/Cart.tsx +++ b/src/components/NewLibrary/components/Cart.tsx @@ -246,65 +246,67 @@ const Cart = () => { ( - {status.currentStep}
, - status.done === status.total || - status.currentStep === "UploadComplete" ? ( - - ) : status.currentStep.includes("Cancelled") || - status.currentStep.startsWith("Error") ? ( - - ) : ( -
- {status.done}/{status.total} -
- ), - , - , - ]} - > - } - title={} - /> - - )} + renderItem={([name, status]) => { + return ( + {status.currentStep}
, + status.done === status.total || + status.currentStep === "UploadComplete" ? ( + + ) : status.currentStep.includes("Cancelled") || + status.currentStep.startsWith("Error") ? ( + + ) : ( +
+ {status.done}/{status.total} +
+ ), + , + , + ]} + > + } + title={} + /> + + ); + }} /> {isEmpty(folderUploadStatus) && isEmpty(fileUploadStatus) && diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 50d4e12e7..cc3864baa 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -11,15 +11,20 @@ import { Toolbar, ToolbarContent, ToolbarItem, + Tooltip, } from "@patternfly/react-core"; import type { DefaultError } from "@tanstack/react-query"; import { Alert, Dropdown, Spin } from "antd"; -import React, { Fragment, useImperativeHandle, useState } from "react"; +import React, { + Fragment, + useImperativeHandle, + useState, + useEffect, +} from "react"; import { useDispatch } from "react-redux"; import { getFileName } from "../../../api/common"; import { removeIndividualSelection } from "../../../store/cart/actions"; import { useTypedSelector } from "../../../store/hooks"; - import { AddIcon, ArchiveIcon, @@ -30,7 +35,6 @@ import { MergeIcon, } from "../../Icons"; import { useFolderOperations } from "../utils/useOperations"; -import useFeedOperations from "../utils/useFeedOperations"; interface AddModalProps { isOpen: boolean; @@ -135,9 +139,41 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { }, })); - const { selectedPaths } = useTypedSelector((state) => state.cart); + const { selectedPaths, fileUploadStatus, folderUploadStatus } = + useTypedSelector((state) => state.cart); const selectedPathsCount = selectedPaths.length; + useEffect(() => { + // Check if any file or folder upload has completed + const isUploadComplete = (status: any) => + status.currentStep === "Upload Complete"; + + const hasFileUploadCompleted = + Object.values(fileUploadStatus).some(isUploadComplete); + const hasFolderUploadCompleted = + Object.values(folderUploadStatus).some(isUploadComplete); + + if (hasFileUploadCompleted || hasFolderUploadCompleted) { + inValidateFolders(); + } + }, [fileUploadStatus, folderUploadStatus, inValidateFolders]); + + const renderOperationButton = ( + icon: React.ReactNode, + operationKey: string, + ariaLabel: string, + ) => ( + + - - {userError && ( - setUserErrors("")} - /> + + + {userError && ( + setUserErrors("")} + /> + )} + + {selectedPathsCount > 0 && ( + <> + + {renderOperationButton( + , + "createFeed", + "Create a new feed", + )} + + + {renderOperationButton( + , + "download", + "Download selected items", + )} + + + {renderOperationButton( + , + "anonymize", + "Anonymize selected items", + )} + + + {renderOperationButton( + , + "merge", + "Merge selected items", + )} + + + {renderOperationButton( + , + "duplicate", + "Copy selected items", + )} + + + {renderOperationButton( + , + "delete", + "Delete selected items", + )} + + + + {selectedPaths.map((selection) => ( + + dispatch(removeIndividualSelection(selection)) + } + > + {getFileName(selection.path)} + + ))} + + + )} - - {selectedPathsCount > 0 && ( - <> - - {renderOperationButton( - , - "createFeed", - "Create a new feed", - )} - - - {renderOperationButton( - , - "download", - "Download selected items", - )} - - - {renderOperationButton( - , - "anonymize", - "Anonymize selected items", - )} - - - {renderOperationButton( - , - "merge", - "Merge selected items", - )} - - - {renderOperationButton( - , - "duplicate", - "Copy selected items", - )} - - - {renderOperationButton( - , - "delete", - "Delete selected items", - )} - - - - {selectedPaths.map((selection) => ( - dispatch(removeIndividualSelection(selection))} - > - {getFileName(selection.path)} - - ))} - - - - )} - + + ), + [ + contextHolder, + userError, + selectedPaths, + selectedPathsCount, + dispatch, + handleOperations, + setUserErrors, + ], ); return ( diff --git a/src/components/NewLibrary/utils/useDeletePayload.tsx b/src/components/NewLibrary/utils/useDeletePayload.tsx index 2485f129f..9714a2829 100644 --- a/src/components/NewLibrary/utils/useDeletePayload.tsx +++ b/src/components/NewLibrary/utils/useDeletePayload.tsx @@ -54,7 +54,6 @@ const useDeletePayload = (inValidateFolders: () => void, api: any) => { message: "Deletion in progress...", key, type: "info", - description: "Testing", onClose: () => { if (mutation.isSuccess) return true; }, diff --git a/src/components/NewLibrary/utils/useFeedOperations.tsx b/src/components/NewLibrary/utils/useFeedOperations.tsx index 40c0f810c..7b3f99219 100644 --- a/src/components/NewLibrary/utils/useFeedOperations.tsx +++ b/src/components/NewLibrary/utils/useFeedOperations.tsx @@ -2,7 +2,7 @@ import { useMutation } from "@tanstack/react-query"; import { useMemo } from "react"; import ChrisAPIClient from "../../../api/chrisapiclient"; import { getFileName } from "../../../api/common"; -import { createFeed } from "../../../store/cart/saga"; +import { createFeed } from "../../../store/cart/downloadSaga"; import type { SelectionPayload } from "../../../store/cart/types"; import { useTypedSelector } from "../../../store/hooks"; diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index 60b27de36..e161600b7 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -46,7 +46,6 @@ export const useFolderOperations = ( if (fileInput.current) { fileInput.current.value = ""; } - //inValidateFolders(); }; const handleFolderChange = async (e: React.ChangeEvent) => { @@ -62,7 +61,6 @@ export const useFolderOperations = ( if (folderInput.current) { folderInput.current.value = ""; } - // inValidateFolders(); }; const handleModalSubmit = async (inputValue: string) => { diff --git a/src/store/cart/downloadSaga.ts b/src/store/cart/downloadSaga.ts new file mode 100644 index 000000000..57428115e --- /dev/null +++ b/src/store/cart/downloadSaga.ts @@ -0,0 +1,214 @@ +import type { + Feed, + FileBrowserFolder, + FileBrowserFolderFile, + FileBrowserFolderFileList, + ItemResource, + Pipeline, + PipelineList, + Plugin, + PluginInstance, + PluginInstanceList, + Workflow, +} from "@fnndsc/chrisapi"; +import { call, fork, put, takeEvery } from "redux-saga/effects"; +import ChrisAPIClient from "../../api/chrisapiclient"; +import { getFileName } from "../../api/common"; +import type { IActionTypeParam } from "../../api/model"; +import { getPlugin } from "../../components/CreateFeed/createFeedHelper"; +import { downloadFile } from "../hooks"; +import { setFileDownloadStatus, setFolderDownloadStatus } from "./actions"; +import { ICartActionTypes, type SelectionPayload } from "./types"; + +export function* setStatus( + type: string, + id: number, + step: "started" | "processing" | "finished" | "cancelled", + fileName: string, + error?: string, + feed?: Feed, +) { + if (type === "file") { + yield put(setFileDownloadStatus({ id, step, fileName, error })); + } else { + yield put(setFolderDownloadStatus({ id, step, fileName, error, feed })); + } +} + +const isFileBrowserFolder = (payload: any): payload is FileBrowserFolder => { + return (payload as FileBrowserFolder).data?.path !== undefined; +}; + +export async function createFeed(path: string[], feedName: string) { + const client = ChrisAPIClient.getClient(); + const dircopy: Plugin | undefined = (await getPlugin("pl-dircopy")) as + | Plugin + | undefined; + + if (!dircopy) { + throw new Error("pl-dircopy was not registered"); + } + const createdInstance: PluginInstance = (await client.createPluginInstance( + dircopy.data.id, + //@ts-ignore + { dir: path.length > 0 ? path.join(",") : path[0] }, + )) as PluginInstance; + + if (!createdInstance) { + throw new Error("Failed to create an instance of pl-dircopy"); + } + const feed = (await createdInstance.getFeed()) as Feed; + if (!feed) { + throw new Error("Failed to create a Feed"); + } + await feed.put({ name: feedName }); + return { createdInstance, feed }; +} + +function* downloadFolder( + payload: FileBrowserFolder | FileBrowserFolderFile, + username: string, + pipelineType: string, +) { + const { id } = payload.data; + const isFolder = isFileBrowserFolder(payload); + const path = isFolder ? payload.data.path : payload.data.fname; + const type = isFolder ? "folder" : "file"; + const folderNameForFeed = getFileName(path); + const client = ChrisAPIClient.getClient(); + + const pipelineName = + pipelineType === "Download Pipeline" + ? "zip v20240311" + : "DICOM anonymization simple v20230926"; + + const pipelineList: PipelineList = yield client.getPipelines({ + name: pipelineName, + }); + + if (!pipelineList || !pipelineList.data) { + throw new Error( + `Failed to find the pipeline. Is this '${pipelineName}' registered?`, + ); + } + yield setStatus(type, id, "processing", path); + const pipelines = pipelineList.getItems() as unknown as Pipeline[]; + const currentPipeline = pipelines[0]; + try { + const feedName = + pipelineType === "Download Pipeline" + ? `Library Download for ${folderNameForFeed}` + : `Library Anonymize for ${folderNameForFeed}`; + const { feed, createdInstance } = yield call(createFeed, [path], feedName); + // Set Status + yield setStatus(type, id, "processing", path, "", feed); + // Add a workflow + const workflow: Workflow = yield client.createWorkflow( + currentPipeline.data.id, + //@ts-ignore + { + previous_plugin_inst_id: createdInstance.data.id, + }, + ); + + if (!workflow) { + throw new Error("Failed to create a workflow"); + } + const pluginInstancesList: PluginInstanceList = + yield workflow.getPluginInstances(); + const pluginInstances = pluginInstancesList.getItems() as PluginInstance[]; + if (pluginInstances.length > 0) { + const zipInstance = pluginInstances[0]; + let filePath = ""; + if (pipelineType === "Download Pipeline") { + filePath = `home/${username}/feeds/feed_${feed.data.id}/pl-dircopy_${createdInstance.data.id}/pl-pfdorun_${zipInstance.data.id}/data`; + } else { + const headerEditInstance = pluginInstances[1]; + filePath = `home/${username}/feeds/feed_${feed.data.id}/pl-dircopy_${createdInstance.data.id}/pl-dicom_headeredit_${headerEditInstance.data.id}/pl-pfdorun_${zipInstance.data.id}/data`; + } + + const statusResource: ItemResource = yield zipInstance.get(); + let status = statusResource.data.status; + while (status !== "finishedSuccessfully") { + yield new Promise((resolve) => setTimeout(resolve, 5000)); // Polling every 5 seconds + const statusReq: ItemResource = yield zipInstance.get(); + status = statusReq.data.status; + if (status === "finishedWithError" || status === "cancelled") { + throw new Error("Download failed. Please try again..."); + } + } + if (status === "finishedSuccessfully") { + const folderList: FileBrowserFolderFileList = + yield client.getFileBrowserFolders({ path: filePath }); + if (!folderList) { + throw new Error( + `Failed to find the files under this path ${filePath}`, + ); + } + + const folders = folderList.getItems(); + if (folders && folders.length > 0) { + const folder = folders[0]; + const files: FileBrowserFolderFileList = yield folder.getFiles(); + const fileItems = files.getItems() as FileBrowserFolderFile[]; + if (!fileItems) { + throw new Error("Failed to find the zip file"); + } + const fileToZip = fileItems[0]; + yield downloadFile(fileToZip); + } else { + throw new Error(`Failed to find a folder for this path: ${filePath}`); + } + } + } + } catch (e) { + if (e instanceof Error) { + throw new Error(e.message); + } + } +} + +function* handleIndividualDownload( + path: SelectionPayload, + username: string, + pipelineType: string, +) { + const { type, payload } = path; + const { id } = payload.data; + const pathForState = type === "file" ? payload.data.fname : payload.data.path; + + try { + yield call(setStatus, type, id, "started", pathForState); + if (type === "file" && pipelineType === "Download Pipeline") { + yield call(downloadFile, payload as FileBrowserFolderFile); + } else { + yield call(downloadFolder, payload, username, pipelineType); + } + yield call(setStatus, type, id, "finished", pathForState); + } catch (error) { + const errMsg = error instanceof Error ? error.message : "Unknown error"; + yield call(setStatus, type, id, "cancelled", pathForState, errMsg); + } +} + +function* handleDownload(action: IActionTypeParam) { + const { paths, username } = action.payload; + for (const path of paths) { + yield fork(handleIndividualDownload, path, username, "Download Pipeline"); + } +} + +function* handleAnonymize(action: IActionTypeParam) { + const { paths, username } = action.payload; + for (const path of paths) { + yield fork(handleIndividualDownload, path, username, "Anonymize Pipeline"); + } +} + +export function* watchAnonymize() { + yield takeEvery(ICartActionTypes.START_ANONYMIZE, handleAnonymize); +} + +export function* watchDownload() { + yield takeEvery(ICartActionTypes.START_DOWNLOAD, handleDownload); +} diff --git a/src/store/cart/saga.ts b/src/store/cart/saga.ts index a56ebc7cd..40318fada 100644 --- a/src/store/cart/saga.ts +++ b/src/store/cart/saga.ts @@ -1,478 +1,6 @@ -import type { - Feed, - FileBrowserFolder, - FileBrowserFolderFile, - FileBrowserFolderFileList, - ItemResource, - Pipeline, - PipelineList, - Plugin, - PluginInstance, - PluginInstanceList, - Workflow, -} from "@fnndsc/chrisapi"; -import type Client from "@fnndsc/chrisapi"; -import axios, { type AxiosProgressEvent } from "axios"; -import { chunk, isEmpty } from "lodash"; -import { END, type EventChannel, eventChannel } from "redux-saga"; -import { - all, - call, - fork, - put, - take, - takeEvery, - select, -} from "redux-saga/effects"; -import ChrisAPIClient from "../../api/chrisapiclient"; -import { getFileName } from "../../api/common"; -import type { IActionTypeParam } from "../../api/model"; -import { getPlugin } from "../../components/CreateFeed/createFeedHelper"; -import { downloadFile } from "../hooks"; -import { - setFileDownloadStatus, - setFileUploadStatus, - setFolderDownloadStatus, - setFolderUploadStatus, -} from "./actions"; -import { - type FileUploadObject, - type FolderUploadObject, - ICartActionTypes, - type SelectionPayload, - type UploadPayload, -} from "./types"; - -function* setStatus( - type: string, - id: number, - step: "started" | "processing" | "finished" | "cancelled", - fileName: string, - error?: string, - feed?: Feed, -) { - if (type === "file") { - yield put(setFileDownloadStatus({ id, step, fileName, error })); - } else { - yield put(setFolderDownloadStatus({ id, step, fileName, error, feed })); - } -} - -const isFileBrowserFolder = (payload: any): payload is FileBrowserFolder => { - return (payload as FileBrowserFolder).data?.path !== undefined; -}; - -export async function createFeed(path: string[], feedName: string) { - const client = ChrisAPIClient.getClient(); - const dircopy: Plugin | undefined = (await getPlugin("pl-dircopy")) as - | Plugin - | undefined; - - if (!dircopy) { - throw new Error("pl-dircopy was not registered"); - } - const createdInstance: PluginInstance = (await client.createPluginInstance( - dircopy.data.id, - //@ts-ignore - { dir: path.length > 0 ? path.join(",") : path[0] }, - )) as PluginInstance; - - if (!createdInstance) { - throw new Error("Failed to create an instance of pl-dircopy"); - } - const feed = (await createdInstance.getFeed()) as Feed; - if (!feed) { - throw new Error("Failed to create a Feed"); - } - await feed.put({ name: feedName }); - return { createdInstance, feed }; -} - -function* downloadFolder( - payload: FileBrowserFolder | FileBrowserFolderFile, - username: string, - pipelineType: string, -) { - const { id } = payload.data; - const isFolder = isFileBrowserFolder(payload); - const path = isFolder ? payload.data.path : payload.data.fname; - const type = isFolder ? "folder" : "file"; - const folderNameForFeed = getFileName(path); - const client = ChrisAPIClient.getClient(); - - const pipelineName = - pipelineType === "Download Pipeline" - ? "zip v20240311" - : "DICOM anonymization simple v20230926"; - - const pipelineList: PipelineList = yield client.getPipelines({ - name: pipelineName, - }); - - if (!pipelineList || !pipelineList.data) { - throw new Error( - `Failed to find the pipeline. Is this '${pipelineName}' registered?`, - ); - } - yield setStatus(type, id, "processing", path); - const pipelines = pipelineList.getItems() as unknown as Pipeline[]; - const currentPipeline = pipelines[0]; - try { - const feedName = - pipelineType === "Download Pipeline" - ? `Library Download for ${folderNameForFeed}` - : `Library Anonymize for ${folderNameForFeed}`; - const { feed, createdInstance } = yield call(createFeed, [path], feedName); - // Set Status - yield setStatus(type, id, "processing", path, "", feed); - // Add a workflow - const workflow: Workflow = yield client.createWorkflow( - currentPipeline.data.id, - //@ts-ignore - { - previous_plugin_inst_id: createdInstance.data.id, - }, - ); - - if (!workflow) { - throw new Error("Failed to create a workflow"); - } - const pluginInstancesList: PluginInstanceList = - yield workflow.getPluginInstances(); - const pluginInstances = pluginInstancesList.getItems() as PluginInstance[]; - if (pluginInstances.length > 0) { - const zipInstance = pluginInstances[0]; - let filePath = ""; - if (pipelineType === "Download Pipeline") { - filePath = `home/${username}/feeds/feed_${feed.data.id}/pl-dircopy_${createdInstance.data.id}/pl-pfdorun_${zipInstance.data.id}/data`; - } else { - const headerEditInstance = pluginInstances[1]; - filePath = `home/${username}/feeds/feed_${feed.data.id}/pl-dircopy_${createdInstance.data.id}/pl-dicom_headeredit_${headerEditInstance.data.id}/pl-pfdorun_${zipInstance.data.id}/data`; - } - - const statusResource: ItemResource = yield zipInstance.get(); - let status = statusResource.data.status; - while (status !== "finishedSuccessfully") { - yield new Promise((resolve) => setTimeout(resolve, 5000)); // Polling every 5 seconds - const statusReq: ItemResource = yield zipInstance.get(); - status = statusReq.data.status; - if (status === "finishedWithError" || status === "cancelled") { - throw new Error("Download failed. Please try again..."); - } - } - if (status === "finishedSuccessfully") { - const folderList: FileBrowserFolderFileList = - yield client.getFileBrowserFolders({ path: filePath }); - if (!folderList) { - throw new Error( - `Failed to find the files under this path ${filePath}`, - ); - } - - const folders = folderList.getItems(); - if (folders && folders.length > 0) { - const folder = folders[0]; - const files: FileBrowserFolderFileList = yield folder.getFiles(); - const fileItems = files.getItems() as FileBrowserFolderFile[]; - if (!fileItems) { - throw new Error("Failed to find the zip file"); - } - const fileToZip = fileItems[0]; - yield downloadFile(fileToZip); - } else { - throw new Error(`Failed to find a folder for this path: ${filePath}`); - } - } - } - } catch (e) { - if (e instanceof Error) { - throw new Error(e.message); - } - } -} - -function* handleIndividualDownload( - path: SelectionPayload, - username: string, - pipelineType: string, -) { - const { type, payload } = path; - const { id } = payload.data; - - const pathForState = type === "file" ? payload.data.fname : payload.data.path; - - try { - yield setStatus(type, id, "started", pathForState); - if (type === "file" && pipelineType === "Download Pipeline") { - yield downloadFile(payload as FileBrowserFolderFile); - } else { - yield downloadFolder( - payload as FileBrowserFolder, - username, - pipelineType, - ); - } - yield setStatus(type, id, "finished", pathForState); - } catch (error) { - const errMsg = error instanceof Error ? error.message : "Uknown error"; - yield setStatus(type, id, "cancelled", pathForState, errMsg); - } -} - -function* handleDownload(action: IActionTypeParam) { - const { paths, username } = action.payload; - - for (const path of paths) { - yield fork(handleIndividualDownload, path, username, "Download Pipeline"); - } -} - -function createUploadChannel(config: any) { - return eventChannel((emitter) => { - const onUploadProgress = (progressEvent: AxiosProgressEvent) => { - if (progressEvent.progress) { - const progress = Math.round(progressEvent.progress * 100); - emitter({ progress }); - } - }; - - const source = axios.CancelToken.source(); - - const axiosConfig = { - headers: config.headers, - onUploadProgress, - cancelToken: source.token, - ...config, - }; - - const cancelHandler = () => { - source.cancel("Operation canceled by the user."); - }; - axiosConfig.signal.addEventListener("abort", cancelHandler); - - axios - .post(config.url, config.data, axiosConfig) - .then((response) => { - const progress = 100; - emitter({ progress, response }); - emitter(END); - }) - .catch((error) => { - let message = "Unexpected Error while uploading the file"; - - if (axios.isCancel(error)) { - emitter({ cancelled: true }); - } else if (axios.isAxiosError(error)) { - message = !isEmpty(error.response?.data.upload_path) - ? error.response?.data.upload_path[0] - : error.message; - } - emitter({ error: message }); - emitter(END); - }); - - return () => { - axiosConfig.signal.removeEventListener("abort", cancelHandler); - }; - }); -} - -function* uploadFileBatch( - client: Client, - files: File[], - currentPath: string, - isFolder: boolean, - batchSize: number, -) { - const url = `${import.meta.env.VITE_CHRIS_UI_URL}userfiles/`; - const batches = chunk(files, batchSize); - const totalFiles = files.length; - let uploadedFilesCount = 0; - let cancelledUploads = false; - let errorOccurred = false; - let lastError = ""; - - const folderController = new AbortController(); - for (const batch of batches) { - yield all( - batch.map((file) => { - const formData = new FormData(); - const name = isFolder ? file.webkitRelativePath : file.name; - const path = `${currentPath}/${name}`; - - formData.append("upload_path", path); - formData.append("fname", file, name); - - const controller = new AbortController(); - const config = { - headers: { Authorization: `Token ${client.auth.token}` }, - signal: isFolder ? folderController.signal : controller.signal, - url, - data: formData, - }; - - const uploadChannel: EventChannel = createUploadChannel(config); - - return call(function* () { - try { - while (true) { - const { progress, response, error, cancelled } = - yield take(uploadChannel); - - if (cancelled) { - cancelledUploads = true; - yield put( - isFolder - ? setFolderUploadStatus({ - step: errorOccurred - ? `Error: ${lastError}` - : "Upload Cancelled", - fileName: name.split("/")[0], - totalCount: totalFiles, - currentCount: uploadedFilesCount, - controller: null, - path: currentPath, - type: "folder", - }) - : setFileUploadStatus({ - step: errorOccurred - ? `Error: ${lastError}` - : "Upload Cancelled", - fileName: name, - progress: progress || 0, - controller: null, - path: currentPath, - type: "file", - }), - ); - break; - } - - if (error) { - if (error.includes("Invalid path.")) { - errorOccurred = true; - lastError = error; // Store the last error message - - // We need to cancel the folder upload manually since it will upload other files in the list. - // If it's an upload path error, all the files in the list are going to be errored so it's safe to cancel the entire upload. - isFolder && folderController.abort(); - if (!isFolder) { - // No need to manually cancel the upload for a single file as the request will fail. - yield put( - setFileUploadStatus({ - step: `Error: ${lastError}`, - fileName: name, - progress: progress || 0, - controller: null, - path: currentPath, - type: "file", - }), - ); - } - break; - } - } - - if (progress !== undefined && !isFolder && !cancelled && !error) { - yield put( - setFileUploadStatus({ - step: - progress === 100 && response - ? "Upload Complete" - : "Uploading...", - fileName: name, - progress: progress, - controller, - path: currentPath, - type: "file", - }), - ); - } - - if (response || error) { - break; - } - } - } finally { - uploadChannel.close(); - } - }); - }), - ); - - if (!cancelledUploads) { - uploadedFilesCount += batch.length; - - if (isFolder) { - const name = files[0].webkitRelativePath; - const fileName = name.split("/")[0]; - yield put( - setFolderUploadStatus({ - step: - uploadedFilesCount === totalFiles - ? "Upload Complete" - : "Uploading...", - fileName: fileName, - totalCount: totalFiles, - currentCount: uploadedFilesCount, - controller: folderController, - path: currentPath, - type: "folder", - }), - ); - } - } - } -} - -function* handleUpload(action: IActionTypeParam) { - const { files, isFolder, currentPath }: UploadPayload = action.payload; - const client = ChrisAPIClient.getClient(); - const batchSize = files.length > 500 ? 100 : 50; // Adjust the batch size as needed - - yield call(uploadFileBatch, client, files, currentPath, isFolder, batchSize); -} - -function* handleAnonymize(action: IActionTypeParam) { - const { paths, username } = action.payload; - for (const path of paths) { - yield fork(handleIndividualDownload, path, username, "Anonymize Pipeline"); - } -} - -function* watchDownload() { - yield takeEvery(ICartActionTypes.START_DOWNLOAD, handleDownload); -} - -function* watchUpload() { - yield takeEvery(ICartActionTypes.START_UPLOAD, handleUpload); -} - -function* watchAnonymize() { - yield takeEvery(ICartActionTypes.START_ANONYMIZE, handleAnonymize); -} - -function* watchCancelUpload() { - yield takeEvery(ICartActionTypes.CANCEL_UPLOAD, function* (action: any) { - const { id: fileName, type } = action.payload; - - if (type === "folder") { - const folderStatus: FolderUploadObject = yield select( - (state) => state.cart.folderUploadStatus[fileName], - ); - if (folderStatus?.controller) { - folderStatus.controller.abort(); - } - } else { - const fileStatus: FileUploadObject = yield select( - (state) => state.cart.fileUploadStatus[fileName], - ); - if (fileStatus?.controller) { - fileStatus.controller.abort(); - } - } - }); -} +import { all, fork } from "redux-saga/effects"; +import { watchAnonymize, watchDownload } from "./downloadSaga"; +import { watchCancelUpload, watchUpload } from "./uploadSaga"; export function* cartSaga() { yield all([ diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts new file mode 100644 index 000000000..1da43596b --- /dev/null +++ b/src/store/cart/uploadSaga.ts @@ -0,0 +1,246 @@ +import type Client from "@fnndsc/chrisapi"; +import axios, { type AxiosProgressEvent } from "axios"; +import { chunk, isEmpty } from "lodash"; +import { END, type EventChannel, eventChannel } from "redux-saga"; +import { all, call, put, select, take, takeEvery } from "redux-saga/effects"; +import ChrisAPIClient from "../../api/chrisapiclient"; +import type { IActionTypeParam } from "../../api/model"; +import { setFileUploadStatus, setFolderUploadStatus } from "./actions"; +import { + type FileUploadObject, + type FolderUploadObject, + ICartActionTypes, + type UploadPayload, +} from "./types"; + +function createUploadChannel(config: any) { + return eventChannel((emitter) => { + const onUploadProgress = (progressEvent: AxiosProgressEvent) => { + if (progressEvent.progress) { + const progress = Math.round(progressEvent.progress * 100); + emitter({ progress }); + } + }; + + const source = axios.CancelToken.source(); + + const axiosConfig = { + headers: config.headers, + onUploadProgress, + cancelToken: source.token, + ...config, + }; + + const cancelHandler = () => { + source.cancel("Operation canceled by the user."); + }; + axiosConfig.signal.addEventListener("abort", cancelHandler); + + axios + .post(config.url, config.data, axiosConfig) + .then((response) => { + const progress = 100; + emitter({ progress, response }); + emitter(END); + }) + .catch((error) => { + let message = "Unexpected Error while uploading the file"; + + if (axios.isCancel(error)) { + emitter({ cancelled: true }); + } else if (axios.isAxiosError(error)) { + message = !isEmpty(error.response?.data.upload_path) + ? error.response?.data.upload_path[0] + : error.message; + } + emitter({ error: message }); + emitter(END); + }); + + return () => { + axiosConfig.signal.removeEventListener("abort", cancelHandler); + }; + }); +} + +function* uploadFileBatch( + client: Client, + files: File[], + currentPath: string, + isFolder: boolean, + batchSize: number, +) { + const url = `${import.meta.env.VITE_CHRIS_UI_URL}userfiles/`; + const batches = chunk(files, batchSize); + const totalFiles = files.length; + let uploadedFilesCount = 0; + let cancelledUploads = false; + let errorOccurred = false; + let lastError = ""; + + const folderController = new AbortController(); + for (const batch of batches) { + yield all( + batch.map((file) => { + const formData = new FormData(); + const name = isFolder ? file.webkitRelativePath : file.name; + const path = `${currentPath}/${name}`; + + formData.append("upload_path", path); + formData.append("fname", file, name); + + const controller = new AbortController(); + const config = { + headers: { Authorization: `Token ${client.auth.token}` }, + signal: isFolder ? folderController.signal : controller.signal, + url, + data: formData, + }; + + const uploadChannel: EventChannel = createUploadChannel(config); + + return call(function* () { + try { + while (true) { + const { progress, response, error, cancelled } = + yield take(uploadChannel); + + if (cancelled) { + cancelledUploads = true; + yield put( + isFolder + ? setFolderUploadStatus({ + step: errorOccurred + ? `Error: ${lastError}` + : "Upload Cancelled", + fileName: name.split("/")[0], + totalCount: totalFiles, + currentCount: uploadedFilesCount, + controller: null, + path: currentPath, + type: "folder", + }) + : setFileUploadStatus({ + step: errorOccurred + ? `Error: ${lastError}` + : "Upload Cancelled", + fileName: name, + progress: progress || 0, + controller: null, + path: currentPath, + type: "file", + }), + ); + break; + } + + if (error) { + if (error.includes("Invalid path.")) { + errorOccurred = true; + lastError = error; // Store the last error message + + // We need to cancel the folder upload manually since it will upload other files in the list. + // If it's an upload path error, all the files in the list are going to be errored so it's safe to cancel the entire upload. + isFolder && folderController.abort(); + if (!isFolder) { + // No need to manually cancel the upload for a single file as the request will fail. + yield put( + setFileUploadStatus({ + step: `Error: ${lastError}`, + fileName: name, + progress: progress || 0, + controller: null, + path: currentPath, + type: "file", + }), + ); + } + break; + } + } + + if (progress !== undefined && !isFolder && !cancelled && !error) { + yield put( + setFileUploadStatus({ + step: + progress === 100 && response + ? "Upload Complete" + : "Uploading...", + fileName: name, + progress: progress, + controller, + path: currentPath, + type: "file", + }), + ); + } + + if (response || error) { + break; + } + } + } finally { + uploadChannel.close(); + } + }); + }), + ); + + if (!cancelledUploads) { + uploadedFilesCount += batch.length; + + if (isFolder) { + const name = files[0].webkitRelativePath; + const fileName = name.split("/")[0]; + yield put( + setFolderUploadStatus({ + step: + uploadedFilesCount === totalFiles + ? "Upload Complete" + : "Uploading...", + fileName: fileName, + totalCount: totalFiles, + currentCount: uploadedFilesCount, + controller: folderController, + path: currentPath, + type: "folder", + }), + ); + } + } + } +} + +function* handleUpload(action: IActionTypeParam) { + const { files, isFolder, currentPath }: UploadPayload = action.payload; + const client = ChrisAPIClient.getClient(); + const batchSize = files.length > 500 ? 100 : 50; // Adjust the batch size as needed + + yield call(uploadFileBatch, client, files, currentPath, isFolder, batchSize); +} + +export function* watchUpload() { + yield takeEvery(ICartActionTypes.START_UPLOAD, handleUpload); +} + +export function* watchCancelUpload() { + yield takeEvery(ICartActionTypes.CANCEL_UPLOAD, function* (action: any) { + const { id: fileName, type } = action.payload; + + if (type === "folder") { + const folderStatus: FolderUploadObject = yield select( + (state) => state.cart.folderUploadStatus[fileName], + ); + if (folderStatus?.controller) { + folderStatus.controller.abort(); + } + } else { + const fileStatus: FileUploadObject = yield select( + (state) => state.cart.fileUploadStatus[fileName], + ); + if (fileStatus?.controller) { + fileStatus.controller.abort(); + } + } + }); +} From 44cac328d72b9e9a99d4539bd3622ee494a675d1 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 12 Aug 2024 10:15:14 -0400 Subject: [PATCH 099/337] feat: Update the progress tracking for folder uploads --- src/components/Feeds/FeedListView.tsx | 2 -- src/store/cart/uploadSaga.ts | 7 ++++--- 2 files changed, 4 insertions(+), 5 deletions(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 85b6f5cd6..21878b0a5 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -67,7 +67,6 @@ const TableSelectable: React.FC = () => { queryKey: ["feeds", perPage, page, type, search, searchType], queryFn: () => fetchFeeds(searchFolderData), enabled: type === "private", - refetchOnMount: true, }); const { @@ -78,7 +77,6 @@ const TableSelectable: React.FC = () => { queryKey: ["publicFeeds", perPage, page, type, search, searchType], queryFn: () => fetchPublicFeeds(searchFolderData), enabled: type === "public", - refetchOnMount: true, }); const feedsToDisplay = type === "private" ? data?.feeds || [] : publicFeeds?.feeds || []; diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index 1da43596b..13872c2ff 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -71,7 +71,9 @@ function* uploadFileBatch( batchSize: number, ) { const url = `${import.meta.env.VITE_CHRIS_UI_URL}userfiles/`; - const batches = chunk(files, batchSize); + const firstBatch = files.slice(0, 1); // First batch with 1 file + const remainingBatches = chunk(files.slice(1), batchSize); // Remaining batches + const batches = [firstBatch, ...remainingBatches]; const totalFiles = files.length; let uploadedFilesCount = 0; let cancelledUploads = false; @@ -139,8 +141,7 @@ function* uploadFileBatch( errorOccurred = true; lastError = error; // Store the last error message - // We need to cancel the folder upload manually since it will upload other files in the list. - // If it's an upload path error, all the files in the list are going to be errored so it's safe to cancel the entire upload. + // We need to cancel the folder upload manually since it will upload other files in the list and they will all error out due to the path being invalid path isFolder && folderController.abort(); if (!isFolder) { // No need to manually cancel the upload for a single file as the request will fail. From 7d02a0072394bb833a9ba5a9b3aaed16044a5581 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 12 Aug 2024 11:52:02 -0400 Subject: [PATCH 100/337] feat: Organize antd imports for easy replacement in the future --- src/components/AddNode/AddNode.tsx | 4 +- src/components/AddNode/BasicConfiguration.tsx | 2 +- src/components/AddNode/ComputeEnvironment.tsx | 6 +- src/components/AddNode/GuidedConfig.tsx | 2 +- src/components/AddPipeline/AddPipeline.tsx | 20 +- src/components/AddTsNode/ChooseConfig.tsx | 41 --- src/components/AddTsNode/ConfigureJoin.tsx | 106 ------- src/components/AddTsNode/Footer.tsx | 67 ----- src/components/AddTsNode/ParentContainer.tsx | 263 ------------------ src/components/AddTsNode/Review.tsx | 62 ----- src/components/AddTsNode/Split.tsx | 36 --- src/components/AddTsNode/graph-node.css | 11 - src/components/AddTsNode/index.tsx | 70 ----- src/components/AddTsNode/utils.ts | 21 -- src/components/Antd/index.tsx | 21 ++ src/components/ComputePage/index.tsx | 10 +- src/components/CreateFeed/ChooseConfig.tsx | 2 +- src/components/CreateFeed/ChrisFileSelect.tsx | 2 +- src/components/CreateFeed/CreateFeed.tsx | 2 +- src/components/CreateFeed/DataPacks.tsx | 18 +- src/components/CreateFeed/HelperComponent.tsx | 2 +- src/components/CreateFeed/LocalFileUpload.tsx | 2 +- src/components/Dashboard/index.tsx | 2 +- src/components/DeleteNode/index.tsx | 4 +- src/components/FeedDetails/index.tsx | 6 +- .../FeedOutputBrowser/FileBrowser.tsx | 4 +- src/components/FeedTree/DropdownMenu.tsx | 2 +- src/components/FeedTree/FeedTree.tsx | 23 +- src/components/FeedTree/Node.tsx | 24 +- src/components/FeedTree/ParentComponent.tsx | 12 +- src/components/FeedTree/data.ts | 6 +- src/components/Feeds/FeedListView.tsx | 9 +- src/components/Feeds/FeedView.tsx | 15 +- src/components/NewLibrary/components/Cart.tsx | 2 +- .../NewLibrary/components/ContextMenu.tsx | 2 +- .../NewLibrary/components/FileCard.tsx | 2 +- .../NewLibrary/components/Operations.tsx | 2 +- src/components/NewLibrary/index.tsx | 2 +- .../NewLibrary/utils/useOperations.tsx | 2 +- .../content/infoForPageHeader.tsx | 4 +- src/components/NodeDetails/PluginTitle.tsx | 3 +- src/components/NodeDetails/Status.tsx | 2 +- .../Pacs/components/PatientCard.tsx | 2 +- src/components/Pacs/components/SeriesCard.tsx | 2 +- .../Pacs/components/SettingsComponents.tsx | 2 +- src/components/Pacs/index.tsx | 2 +- .../PipelinesCopy/CodeBlockComponent.tsx | 4 +- .../ComputeListForSingleCompute.tsx | 4 +- src/components/PipelinesCopy/ListCompute.tsx | 5 +- src/components/PipelinesCopy/NodeData.tsx | 6 +- .../PipelinesCopy/PipelineUpload.tsx | 2 +- .../PipelinesCopy/SelectAllCompute.tsx | 6 +- src/components/PipelinesCopy/TitleChange.tsx | 12 +- src/components/PipelinesCopy/index.tsx | 2 +- src/components/PluginCatalog/index.tsx | 2 +- src/components/PluginInstall/index.tsx | 2 +- src/components/Preview/FileDetailView.tsx | 2 +- src/components/Preview/HelperComponent.tsx | 8 +- .../Preview/displays/CatchallDisplay.tsx | 2 +- .../SinglePlugin/PluginCatalogComponents.tsx | 2 +- src/components/SinglePlugin/index.tsx | 2 +- src/components/Store/index.tsx | 2 +- src/components/Wrapper/CartNotify.tsx | 2 +- src/store/root/applicationState.ts | 3 +- src/store/root/rootReducer.ts | 2 - src/store/tsplugins/actions.ts | 13 - src/store/tsplugins/reducer.ts | 56 ---- src/store/tsplugins/types.ts | 16 -- tsconfig.app.json | 26 ++ tsconfig.json | 28 +- tsconfig.node.json | 19 +- 71 files changed, 179 insertions(+), 955 deletions(-) delete mode 100644 src/components/AddTsNode/ChooseConfig.tsx delete mode 100644 src/components/AddTsNode/ConfigureJoin.tsx delete mode 100644 src/components/AddTsNode/Footer.tsx delete mode 100644 src/components/AddTsNode/ParentContainer.tsx delete mode 100644 src/components/AddTsNode/Review.tsx delete mode 100644 src/components/AddTsNode/Split.tsx delete mode 100644 src/components/AddTsNode/graph-node.css delete mode 100644 src/components/AddTsNode/index.tsx delete mode 100644 src/components/AddTsNode/utils.ts create mode 100644 src/components/Antd/index.tsx delete mode 100644 src/store/tsplugins/actions.ts delete mode 100644 src/store/tsplugins/reducer.ts delete mode 100644 src/store/tsplugins/types.ts create mode 100644 tsconfig.app.json diff --git a/src/components/AddNode/AddNode.tsx b/src/components/AddNode/AddNode.tsx index 2fe478615..6db204540 100644 --- a/src/components/AddNode/AddNode.tsx +++ b/src/components/AddNode/AddNode.tsx @@ -16,10 +16,10 @@ import { getRequiredObject } from "../CreateFeed/createFeedHelper"; import BasicConfiguration from "./BasicConfiguration"; import GuidedConfig from "./GuidedConfig"; import "./add-node.css"; -import { Alert } from "antd"; +import { useTypedSelector } from "../../store/hooks"; +import { Alert } from "../Antd"; import { AddNodeContext } from "./context"; import { Types } from "./types"; -import { useTypedSelector } from "../../store/hooks"; const AddNode: React.FC = () => { const dispatch = useDispatch(); diff --git a/src/components/AddNode/BasicConfiguration.tsx b/src/components/AddNode/BasicConfiguration.tsx index 46179ec82..57ae6d783 100644 --- a/src/components/AddNode/BasicConfiguration.tsx +++ b/src/components/AddNode/BasicConfiguration.tsx @@ -9,11 +9,11 @@ import { Title, } from "@patternfly/react-core"; import { useQuery } from "@tanstack/react-query"; -import { Alert } from "antd"; import type React from "react"; import { useCallback, useContext, useRef, useState } from "react"; import ChrisAPIClient from "../../api/chrisapiclient"; import { fetchResource } from "../../api/common"; +import { Alert } from "../Antd"; import { EmptyStateComponent, SpinContainer } from "../Common"; import { ThemeContext } from "../DarkTheme/useTheme"; import { AddNodeContext } from "./context"; diff --git a/src/components/AddNode/ComputeEnvironment.tsx b/src/components/AddNode/ComputeEnvironment.tsx index baf2494f3..ae81e2b46 100644 --- a/src/components/AddNode/ComputeEnvironment.tsx +++ b/src/components/AddNode/ComputeEnvironment.tsx @@ -1,14 +1,14 @@ -import React, { useContext, useCallback, useState, useEffect } from "react"; import { MenuToggle, Select, SelectList, SelectOption, } from "@patternfly/react-core"; -import { AddNodeContext } from "./context"; +import React, { useContext, useCallback, useState, useEffect } from "react"; import { useTypedSelector } from "../../store/hooks"; +import { Alert } from "../Antd"; +import { AddNodeContext } from "./context"; import { Types } from "./types"; -import { Alert } from "antd"; const ComputeEnvironment: React.FC = () => { const { computeEnv: computeEnvs, resourceError } = useTypedSelector( diff --git a/src/components/AddNode/GuidedConfig.tsx b/src/components/AddNode/GuidedConfig.tsx index 38f5dd3bd..6dc2856f0 100644 --- a/src/components/AddNode/GuidedConfig.tsx +++ b/src/components/AddNode/GuidedConfig.tsx @@ -27,7 +27,7 @@ import { Tooltip, } from "@patternfly/react-core"; import { useMutation } from "@tanstack/react-query"; -import { Alert, Spin } from "antd"; +import { Alert, Spin } from "../Antd"; import { isEmpty } from "lodash"; import React, { useContext, useEffect, useState } from "react"; import { useDispatch } from "react-redux"; diff --git a/src/components/AddPipeline/AddPipeline.tsx b/src/components/AddPipeline/AddPipeline.tsx index b3dac5452..5b808ad4e 100644 --- a/src/components/AddPipeline/AddPipeline.tsx +++ b/src/components/AddPipeline/AddPipeline.tsx @@ -1,10 +1,10 @@ import type { PluginInstance } from "@fnndsc/chrisapi"; import { Button, Modal, ModalVariant } from "@patternfly/react-core"; import { useMutation } from "@tanstack/react-query"; -import { Alert } from "antd"; -import React, { useContext } from "react"; +import React, { useContext, Fragment } from "react"; import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../api/chrisapiclient"; +import { fetchResource } from "../../api/common"; import { useTypedSelector } from "../../store/hooks"; import { getNodeOperations } from "../../store/plugin/actions"; import { @@ -12,9 +12,8 @@ import { getSelectedPlugin, } from "../../store/pluginInstance/actions"; import { getPluginInstanceStatusRequest } from "../../store/resources/actions"; +import { Alert, Form, Tag } from "../Antd"; import { SpinContainer } from "../Common"; -import { Form, Tag } from "antd"; -import { fetchResource } from "../../api/common"; import Pipelines from "../PipelinesCopy"; import { PipelineContext, Types } from "../PipelinesCopy/context"; @@ -121,10 +120,11 @@ const AddPipeline = () => { } }); - const isButtonDisabled = - pipelineToAdd && computeInfo?.[pipelineToAdd.data.id] && !mutation.isPending - ? false - : true; + const isButtonDisabled = !( + pipelineToAdd && + computeInfo?.[pipelineToAdd.data.id] && + !mutation.isPending + ); return ( { , - <> + {state.pipelineToAdd && (
{
)} - , + , ]} > diff --git a/src/components/AddTsNode/ChooseConfig.tsx b/src/components/AddTsNode/ChooseConfig.tsx deleted file mode 100644 index 1f41bfe44..000000000 --- a/src/components/AddTsNode/ChooseConfig.tsx +++ /dev/null @@ -1,41 +0,0 @@ -import React from "react"; -import { Radio } from "@patternfly/react-core"; - -type ChooseConfig = { - selectedConfig: string; - handleConfig: (value: string) => void; -}; - -const ChooseConfig: React.FC = ({ - selectedConfig, - handleConfig, -}: ChooseConfig) => { - return ( -
- { - handleConfig(event.currentTarget.value); - }} - isChecked={selectedConfig === "join-node"} - value="join-node" - name="join-node" - id="radio" - label="Join Nodes" - description="The allows you to join nodes" - /> - { - handleConfig(event.currentTarget.value); - }} - isChecked={selectedConfig === "split-node"} - value="split-node" - name="split-node" - id="split" - label="Split Nodes" - description="This allows you to split nodes" - /> -
- ); -}; - -export default ChooseConfig; diff --git a/src/components/AddTsNode/ConfigureJoin.tsx b/src/components/AddTsNode/ConfigureJoin.tsx deleted file mode 100644 index 22831e6ce..000000000 --- a/src/components/AddTsNode/ConfigureJoin.tsx +++ /dev/null @@ -1,106 +0,0 @@ -import React from "react"; -import { Button, List, Form, Input, Checkbox } from "antd"; -import { useDispatch } from "react-redux"; -import type { Plugin, PluginParameter } from "@fnndsc/chrisapi"; -import { deleteTsNode } from "../../store/tsplugins/actions"; -import { useSafeDispatch } from "../../api/common"; -import { useTypedSelector } from "../../store/hooks"; -import { CloseIcon } from "../Icons"; -import { InputType } from "./ParentContainer"; - -type ConfigureJoinProps = { - selectedTsPlugin?: Plugin; - joinInput: InputType; - handleValueChange: (value: string, name: string) => void; - handleCheckboxChange: (value: boolean, name: string) => void; -}; - -const ConfigureJoin = ({ - selectedTsPlugin, - handleCheckboxChange, - handleValueChange, - joinInput, -}: ConfigureJoinProps) => { - const [tsParams, setTsParams] = React.useState([]); - const tsNodes = useTypedSelector((state) => state.tsPlugins.tsNodes); - const dispatch = useDispatch(); - const safeDispatch = useSafeDispatch(dispatch); - - React.useEffect(() => { - async function fetchTsParameters() { - if (selectedTsPlugin) { - const parametersList = await selectedTsPlugin.getPluginParameters({ - limit: 20, - }); - - const parameters = parametersList.getItems(); - if (parameters) setTsParams(parameters as PluginParameter[]); - } - } - fetchTsParameters(); - }, [selectedTsPlugin]); - - return ( -
- {tsNodes && tsNodes.length > 0 && ( - ( - <> - - {item.data.title || item.data.plugin_name} -
- ); -}; - -export default ConfigureJoin; diff --git a/src/components/AddTsNode/Footer.tsx b/src/components/AddTsNode/Footer.tsx deleted file mode 100644 index 86d93cbf4..000000000 --- a/src/components/AddTsNode/Footer.tsx +++ /dev/null @@ -1,67 +0,0 @@ -import { Button } from "@patternfly/react-core"; -import { Plugin } from "@fnndsc/chrisapi"; -import { Space } from "antd"; -import { useTypedSelector } from "../../store/hooks"; - -export type InputType = { - [key: string]: string | boolean; -}; -type FooterProps = { - currentStep: number; - onBack: () => void; - onNext: () => void; - onCancel: () => void; - selectedTsPlugin?: Plugin; - selectedConfig?: string; - splitInput: InputType; -}; - -const Footer = ({ - currentStep, - onBack, - onNext, - onCancel, - selectedTsPlugin, - selectedConfig, - splitInput, -}: FooterProps) => { - const { tsNodes } = useTypedSelector((state) => state.tsPlugins); - - return ( - - - - - - - ); -}; - -export default Footer; diff --git a/src/components/AddTsNode/ParentContainer.tsx b/src/components/AddTsNode/ParentContainer.tsx deleted file mode 100644 index 6d44256d0..000000000 --- a/src/components/AddTsNode/ParentContainer.tsx +++ /dev/null @@ -1,263 +0,0 @@ -import React from "react"; -import { useDispatch } from "react-redux"; -import { Title } from "@patternfly/react-core"; -import ChooseConfig from "./ChooseConfig"; -import Footer from "./Footer"; -import Split from "./Split"; -import ConfigureJoin from "./ConfigureJoin"; -import Review from "./Review"; -import { getJoinInput } from "./utils"; -import { useTypedSelector } from "../../store/hooks"; - -import Client from "../../api/chrisapiclient"; -import { switchTreeMode } from "../../store/tsplugins/actions"; -import { - addNodeRequest, - addSplitNodes, -} from "../../store/pluginInstance/actions"; -import type { Plugin } from "@fnndsc/chrisapi"; - -function getNodeState() { - return { - selectedConfig: "join-node", - selectedTsPlugin: undefined, - joinInput: {}, - splitInput: {}, - stepNumber: 0, - error: {}, - }; -} - -export type InputType = { - [key: string]: string | boolean; -}; - -export type NodeState = { - selectedConfig: string; - joinInput: InputType; - splitInput: InputType; - stepNumber: number; - error: any; -}; - -export type GraphNodeProps = { - onVisibleChange: (visible: boolean) => void; - visible: boolean; - selectedTsPlugin?: Plugin; -}; - -const GraphNode = (props: GraphNodeProps) => { - const { onVisibleChange, visible, selectedTsPlugin } = props; - const selectedPlugin = useTypedSelector( - (state) => state.instance.selectedPlugin, - ); - const { tsNodes, treeMode } = useTypedSelector((state) => state.tsPlugins); - const nodes = useTypedSelector((state) => state.instance.pluginInstances); - const dispatch = useDispatch(); - - const handleKeyDown = (event: any) => { - if (event.code === "ArrowRight") { - event.preventDefault(); - onNext(); - } - if (event.code === "ArrowLeft") { - event.preventDefault(); - onBack(); - } - if (event.key === "Enter") { - if (stepNumber === 2) { - handleAdd(); - } - } - }; - - React.useEffect(() => { - window.addEventListener("keydown", handleKeyDown); - return () => { - window.removeEventListener("keydown", handleKeyDown); - }; - }); - - const [nodeState, setNodeState] = React.useState(getNodeState); - const { selectedConfig, joinInput, splitInput, stepNumber } = nodeState; - - const handleConfig = (value: string) => { - setNodeState({ - ...nodeState, - selectedConfig: value, - }); - }; - - const onBack = () => { - stepNumber > 0 && - setNodeState({ - ...nodeState, - stepNumber: stepNumber - 1, - }); - }; - - const onNext = () => { - if (stepNumber === 2) { - handleAdd(); - } else - stepNumber < 2 && - setNodeState({ - ...nodeState, - stepNumber: stepNumber + 1, - }); - }; - - const onCancel = () => { - handleResets(); - onVisibleChange(!visible); - dispatch(switchTreeMode(!treeMode)); - }; - - const handleResets = () => { - setNodeState(getNodeState); - }; - - const handleAdd = async () => { - const { joinInput, selectedConfig } = nodeState; - const input = getJoinInput(joinInput, tsNodes); - - if (tsNodes && tsNodes?.length > 0) { - if (selectedConfig === "join-node") { - const finalParameterList = { - ...input, - ["previous_id"]: tsNodes[0].data.id, - }; - - const pluginInstance = await selectedTsPlugin?.getPluginInstances(); - try { - await pluginInstance?.post(finalParameterList); - const pluginInstanceItems = pluginInstance?.getItems(); - if (pluginInstanceItems) { - const node = pluginInstanceItems[0]; - dispatch(addNodeRequest({ pluginItem: node, nodes: nodes.data })); - } - dispatch(switchTreeMode(!treeMode)); - handleResets(); - onVisibleChange(!visible); - } catch (error) { - console.warn("ERROR", error); - } - } else if ( - selectedPlugin && - splitInput && - splitInput["filter"] && - splitInput["compute_resource"] - ) { - try { - const client = Client.getClient(); - const node = await client.createPluginInstanceSplit( - selectedPlugin.data.id, - splitInput["filter"] as string, - splitInput["compute_resource"] as string, - ); - const instanceIds = node.data.created_plugin_inst_ids.split(","); - const splitNodes = []; - for (const i in instanceIds) { - const id = instanceIds[i]; - const pluginInstance = await client.getPluginInstance(+id); - splitNodes.push(pluginInstance); - } - dispatch( - addSplitNodes({ splitNodes, nodes: nodes.data, selectedPlugin }), - ); - handleResets(); - onVisibleChange(!visible); - } catch (error) { - console.warn("ERROR", error); - } - } - } - }; - - const handleSplitChange = (value: string, name: string) => { - setNodeState({ - ...nodeState, - splitInput: { - ...nodeState.splitInput, - [name]: value, - }, - }); - }; - - const handleValueChange = (value: string, name: string) => { - setNodeState({ - ...nodeState, - joinInput: { - ...nodeState.joinInput, - [name]: value, - }, - }); - }; - - const handleCheckboxChange = (value: boolean, name: string) => { - setNodeState({ - ...nodeState, - joinInput: { - ...nodeState.joinInput, - [name]: value, - }, - }); - }; - - const steps = [ - { - step: 1, - component: ( - - ), - }, - { - step: 2, - component: - selectedConfig === "join-node" ? ( - - ) : ( - - ), - }, - { - step: 3, - component: , - }, - ]; - - const title = [ - "Configure a Graph Node :", - `Configure ${selectedTsPlugin?.data.name}`, - "Review", - ]; - - return ( - <> - {title[stepNumber]} - {steps[stepNumber].component} -
- - ); -}; - -export default GraphNode; diff --git a/src/components/AddTsNode/Review.tsx b/src/components/AddTsNode/Review.tsx deleted file mode 100644 index c279b5fec..000000000 --- a/src/components/AddTsNode/Review.tsx +++ /dev/null @@ -1,62 +0,0 @@ -import { InputType, NodeState } from "./ParentContainer"; -import { Grid, GridItem } from "@patternfly/react-core"; -import { useTypedSelector } from "../../store/hooks"; -import { getJoinInput } from "./utils"; - -const Review = ({ nodeState }: { nodeState: NodeState }) => { - const tsNodes = useTypedSelector((state) => state.tsPlugins.tsNodes); - const selectedPlugin = useTypedSelector( - (state) => state.instance.selectedPlugin, - ); - const { joinInput, splitInput, selectedConfig } = nodeState; - let generatedString = ""; - - const getInput = (input: InputType) => { - let string = ""; - for (const parameter in input) { - string += ` --${parameter} ${input[parameter]}`; - } - return string; - }; - - if (selectedConfig === "join-node") { - const input = getJoinInput(joinInput, tsNodes); - generatedString = getInput(input); - } else if (selectedConfig === "split-node") { - generatedString = getInput(splitInput); - } - - return ( -
- - - Operation Mode: - - - - - {selectedConfig === "join-node" ? "Join Node" : "Split Node"} - - - - ParentNode: - - - - - {selectedPlugin?.data.title || selectedPlugin?.data.plugin_name} - - - - Plugin Configuration - - - - {generatedString} - - -
- ); -}; - -export default Review; diff --git a/src/components/AddTsNode/Split.tsx b/src/components/AddTsNode/Split.tsx deleted file mode 100644 index c9edc745f..000000000 --- a/src/components/AddTsNode/Split.tsx +++ /dev/null @@ -1,36 +0,0 @@ -import React from "react"; -import { Form, Input } from "antd"; -import { InputType } from "./ParentContainer"; - -type SplitProps = { - handleSplitChange: (value: string, name: string) => void; - splitInput: InputType; -}; - -const Split = ({ splitInput, handleSplitChange }: SplitProps) => { - return ( -
-
- - ) => { - handleSplitChange(e.target.value, "filter"); - }} - /> - - - ) => { - handleSplitChange(e.target.value, "compute_resource"); - }} - /> - -
-
- ); -}; - -export default Split; diff --git a/src/components/AddTsNode/graph-node.css b/src/components/AddTsNode/graph-node.css deleted file mode 100644 index a44b255d1..000000000 --- a/src/components/AddTsNode/graph-node.css +++ /dev/null @@ -1,11 +0,0 @@ -.list-container { - width: 100%; - height: 20vh; - padding-top: 1rem; - padding-bottom: 1rem; -} - -.computedValue, -.input { - font-family: monospace; -} \ No newline at end of file diff --git a/src/components/AddTsNode/index.tsx b/src/components/AddTsNode/index.tsx deleted file mode 100644 index bdcd47315..000000000 --- a/src/components/AddTsNode/index.tsx +++ /dev/null @@ -1,70 +0,0 @@ -import type { Plugin } from "@fnndsc/chrisapi"; -import { Button } from "@patternfly/react-core"; -import { Popover } from "antd"; -import React from "react"; -import { useDispatch } from "react-redux"; -import ChrisAPIClient from "../../api/chrisapiclient"; -import { useTypedSelector } from "../../store/hooks"; -import { getNodeOperations } from "../../store/plugin/actions"; -import { switchTreeMode } from "../../store/tsplugins/actions"; -import { CodeBranchIcon } from "../Icons"; -import GraphNode from "./ParentContainer"; -import "./graph-node.css"; - -const GraphNodeContainer = () => { - const dispatch = useDispatch(); - const { childGraph } = useTypedSelector( - (state) => state.plugin.nodeOperations, - ); - const [selectedTsPlugin, setTsPlugin] = React.useState(); - const { treeMode } = useTypedSelector((state) => state.tsPlugins); - const handleVisibleChange = React.useCallback(() => { - if (treeMode === true) { - dispatch(switchTreeMode(false)); - } else { - dispatch(switchTreeMode(true)); - } - dispatch(getNodeOperations("childGraph")); - }, [dispatch, treeMode]); - - React.useEffect(() => { - const fetchTsPlugin = async () => { - const client = ChrisAPIClient.getClient(); - const pluginList = await client.getPlugins({ - limit: 1000, - }); - const pluginListItems = pluginList.getItems(); - if (pluginListItems) { - const tsPlugins: Plugin[] = pluginListItems.filter((item) => { - if (item.data.type === "ts") return item; - }); - setTsPlugin(() => { - return tsPlugins[0]; - }); - } - }; - fetchTsPlugin(); - }, []); - - return ( - - } - placement="bottom" - open={childGraph} - onOpenChange={handleVisibleChange} - trigger="click" - > - - - ); -}; -export default GraphNodeContainer; diff --git a/src/components/AddTsNode/utils.ts b/src/components/AddTsNode/utils.ts deleted file mode 100644 index bf0c59646..000000000 --- a/src/components/AddTsNode/utils.ts +++ /dev/null @@ -1,21 +0,0 @@ -import { PluginInstance } from "@fnndsc/chrisapi"; -import { InputType } from "./ParentContainer"; - -export const getJoinInput = ( - joinInput: InputType, - tsNodes?: PluginInstance[], -) => { - const instanceIds = tsNodes?.map((node) => { - return `${node.data.id}`; - }); - - let input: InputType = {}; - - if (instanceIds) { - input = { - ...joinInput, - ["plugininstances"]: instanceIds.join(","), - }; - } - return input || {}; -}; diff --git a/src/components/Antd/index.tsx b/src/components/Antd/index.tsx new file mode 100644 index 000000000..784625b47 --- /dev/null +++ b/src/components/Antd/index.tsx @@ -0,0 +1,21 @@ +export { + Alert, + Avatar, + Badge, + Checkbox, + Collapse, + Drawer, + Dropdown, + Form, + List, + Popconfirm, + Popover, + Space, + Spin, + Steps, + Tag, + Tree, + Typography, + notification, + type MenuProps, +} from "antd"; diff --git a/src/components/ComputePage/index.tsx b/src/components/ComputePage/index.tsx index 697502b08..a45b644c6 100644 --- a/src/components/ComputePage/index.tsx +++ b/src/components/ComputePage/index.tsx @@ -1,11 +1,11 @@ -import React from "react"; -import { Typography } from "antd"; import { PageSection } from "@patternfly/react-core"; -import ComputeCatalog from "./ComputeCatalog"; -import { InfoIcon } from "../Common"; -import { setSidebarActive } from "../../store/ui/actions"; +import React from "react"; import { useDispatch } from "react-redux"; +import { setSidebarActive } from "../../store/ui/actions"; +import { Typography } from "../Antd"; +import { InfoIcon } from "../Common"; import WrapperConnect from "../Wrapper"; +import ComputeCatalog from "./ComputeCatalog"; const { Paragraph } = Typography; diff --git a/src/components/CreateFeed/ChooseConfig.tsx b/src/components/CreateFeed/ChooseConfig.tsx index f8aa6e358..7eb306a9d 100644 --- a/src/components/CreateFeed/ChooseConfig.tsx +++ b/src/components/CreateFeed/ChooseConfig.tsx @@ -18,7 +18,7 @@ import { Tooltip, useWizardContext, } from "@patternfly/react-core"; -import { Alert, Steps, notification } from "antd"; +import { Alert, Steps, notification } from "../Antd"; import React, { useCallback, useContext, useEffect, useState } from "react"; import { useTypedSelector } from "../../store/hooks"; import GuidedConfig from "../AddNode/GuidedConfig"; diff --git a/src/components/CreateFeed/ChrisFileSelect.tsx b/src/components/CreateFeed/ChrisFileSelect.tsx index 115b21d8f..6e779ea28 100644 --- a/src/components/CreateFeed/ChrisFileSelect.tsx +++ b/src/components/CreateFeed/ChrisFileSelect.tsx @@ -2,7 +2,7 @@ import React, { useState, useContext, useCallback, useEffect } from "react"; import { CreateFeedContext } from "./context"; import { useWizardContext } from "@patternfly/react-core"; import type { EventDataNode, Key } from "rc-tree/lib/interface"; -import { Tree, notification } from "antd"; +import { Tree, notification } from "../Antd"; import { Types, diff --git a/src/components/CreateFeed/CreateFeed.tsx b/src/components/CreateFeed/CreateFeed.tsx index 24d02177d..5e51f49a1 100644 --- a/src/components/CreateFeed/CreateFeed.tsx +++ b/src/components/CreateFeed/CreateFeed.tsx @@ -8,7 +8,7 @@ import { WizardStep, } from "@patternfly/react-core"; import { useQueryClient } from "@tanstack/react-query"; -import { notification } from "antd"; +import { notification } from "../Antd"; import * as React from "react"; import { useContext } from "react"; import { catchError } from "../../api/common"; diff --git a/src/components/CreateFeed/DataPacks.tsx b/src/components/CreateFeed/DataPacks.tsx index a96fee6ab..7134fd66b 100644 --- a/src/components/CreateFeed/DataPacks.tsx +++ b/src/components/CreateFeed/DataPacks.tsx @@ -1,23 +1,23 @@ -import { useEffect, useState, useContext, useRef, useCallback } from "react"; import type { PluginMeta } from "@fnndsc/chrisapi"; import { - Pagination, - ToolbarItem, - Radio, Button, ButtonVariant, InputGroup, + Pagination, + Radio, TextInput, + ToolbarItem, useWizardContext, } from "@patternfly/react-core"; -import { SearchIcon } from "../Icons"; -import { Types as AddNodeTypes } from "../AddNode/types"; -import { Types } from "./types/feed"; -import { notification } from "antd"; import debounce from "lodash/debounce"; -import { getPlugins } from "./utils"; +import { useCallback, useContext, useEffect, useRef, useState } from "react"; import { AddNodeContext } from "../AddNode/context"; +import { Types as AddNodeTypes } from "../AddNode/types"; +import { notification } from "../Antd"; +import { SearchIcon } from "../Icons"; import { CreateFeedContext } from "./context"; +import { Types } from "./types/feed"; +import { getPlugins } from "./utils"; interface FilterProps { perPage: number; diff --git a/src/components/CreateFeed/HelperComponent.tsx b/src/components/CreateFeed/HelperComponent.tsx index bc6354d02..df2e1e4d1 100644 --- a/src/components/CreateFeed/HelperComponent.tsx +++ b/src/components/CreateFeed/HelperComponent.tsx @@ -5,7 +5,7 @@ import { Flex, FlexItem, } from "@patternfly/react-core"; -import { notification } from "antd"; +import { notification } from "../Antd"; import { DeleteIcon as TrashIcon, FileIcon, FolderIcon } from "../Icons"; import { CreateFeedContext } from "./context"; import { Types } from "./types/feed"; diff --git a/src/components/CreateFeed/LocalFileUpload.tsx b/src/components/CreateFeed/LocalFileUpload.tsx index 6661f377f..12eafa36c 100644 --- a/src/components/CreateFeed/LocalFileUpload.tsx +++ b/src/components/CreateFeed/LocalFileUpload.tsx @@ -3,7 +3,7 @@ import { WizardContext } from "@patternfly/react-core"; import { CreateFeedContext } from "./context"; import { Types } from "./types/feed"; import { LocalFileList } from "./HelperComponent"; -import { notification } from "antd"; +import { notification } from "../Antd"; const LocalFileUpload = () => { const { state, dispatch } = useContext(CreateFeedContext); diff --git a/src/components/Dashboard/index.tsx b/src/components/Dashboard/index.tsx index 51474d5d1..66bb31fad 100644 --- a/src/components/Dashboard/index.tsx +++ b/src/components/Dashboard/index.tsx @@ -3,7 +3,7 @@ import BUILD_VERSION from "../../getBuildVersion"; import { useDispatch } from "react-redux"; import WrapperConnect from "../Wrapper"; import { PageSection, Grid, GridItem } from "@patternfly/react-core"; -import { Typography } from "antd"; +import { Typography } from "../Antd"; import { setSidebarActive } from "../../store/ui/actions"; import { InfoIcon } from "../Common"; import { CatalogTile } from "@patternfly/react-catalog-view-extension"; diff --git a/src/components/DeleteNode/index.tsx b/src/components/DeleteNode/index.tsx index 238cb6911..727980936 100644 --- a/src/components/DeleteNode/index.tsx +++ b/src/components/DeleteNode/index.tsx @@ -1,7 +1,7 @@ -import { PluginInstance } from "@fnndsc/chrisapi"; +import type { PluginInstance } from "@fnndsc/chrisapi"; import { Button, Modal, ModalVariant } from "@patternfly/react-core"; import { useMutation } from "@tanstack/react-query"; -import { Alert } from "antd"; +import { Alert } from "../Antd"; import { useEffect, Fragment } from "react"; import { useDispatch } from "react-redux"; import { fetchResource } from "../../api/common"; diff --git a/src/components/FeedDetails/index.tsx b/src/components/FeedDetails/index.tsx index ae029c575..4482e7848 100644 --- a/src/components/FeedDetails/index.tsx +++ b/src/components/FeedDetails/index.tsx @@ -1,10 +1,10 @@ import { ToolbarItem } from "@patternfly/react-core"; -import { Badge } from "antd"; -import React, { ReactNode, useState } from "react"; +import { Badge } from "../Antd"; +import React, { type ReactNode, useState } from "react"; import { useDispatch } from "react-redux"; import { fetchNote } from "../../api/common"; import { setDrawerCurrentlyActive } from "../../store/drawer/actions"; -import { IDrawerState } from "../../store/drawer/types"; +import type { IDrawerState } from "../../store/drawer/types"; import { useTypedSelector } from "../../store/hooks"; import { ButtonWithTooltip } from "../Feeds/DrawerUtils"; import { handleToggle } from "../Feeds/utilties"; diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index b56fdd1e9..d10f292fe 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -11,15 +11,16 @@ import { Tooltip, } from "@patternfly/react-core"; import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; -import { notification } from "antd"; import { useContext, useEffect } from "react"; import { useDispatch } from "react-redux"; +import { getFileExtension } from "../../api/model"; import { setFilePreviewPanel } from "../../store/drawer/actions"; import { clearSelectedFile, setSelectedFile, } from "../../store/explorer/actions"; import useDownload, { useTypedSelector } from "../../store/hooks"; +import { notification } from "../Antd"; import { ClipboardCopyContainer, SpinContainer, getIcon } from "../Common"; import { ThemeContext } from "../DarkTheme/useTheme"; import { DrawerActionButton } from "../Feeds/DrawerUtils"; @@ -29,7 +30,6 @@ import FileDetailView from "../Preview/FileDetailView"; import XtkViewer from "../XtkViewer/XtkViewer"; import type { FileBrowserProps } from "./types"; import { bytesToSize } from "./utilities"; -import { getFileExtension } from "../../api/model"; const previewAnimation = [{ opacity: "0.0" }, { opacity: "1.0" }]; diff --git a/src/components/FeedTree/DropdownMenu.tsx b/src/components/FeedTree/DropdownMenu.tsx index efa820ed1..e1d51951c 100644 --- a/src/components/FeedTree/DropdownMenu.tsx +++ b/src/components/FeedTree/DropdownMenu.tsx @@ -1,4 +1,4 @@ -import { Dropdown, type MenuProps } from "antd"; +import { Dropdown, type MenuProps } from "../Antd"; import { useDispatch } from "react-redux"; import { useTypedSelector } from "../../store/hooks"; import { getNodeOperations } from "../../store/plugin/actions"; diff --git a/src/components/FeedTree/FeedTree.tsx b/src/components/FeedTree/FeedTree.tsx index 9e104a920..04ca3f21b 100644 --- a/src/components/FeedTree/FeedTree.tsx +++ b/src/components/FeedTree/FeedTree.tsx @@ -1,4 +1,3 @@ -import type { PluginInstance } from "@fnndsc/chrisapi"; import { Alert, Switch, TextInput } from "@patternfly/react-core"; import { type HierarchyPointLink, @@ -209,7 +208,6 @@ const FeedTree = (props: OwnProps) => { } }, [size, orientation, dispatch]); - const mode = useTypedSelector((state) => state.tsPlugins.treeMode); const [feedState, setFeedState] = React.useState( getInitialState(props, feedTreeProp), ); @@ -288,19 +286,10 @@ const FeedTree = (props: OwnProps) => { props.onNodeClick(item); }; - const handleNodeClickTs = (item: PluginInstance) => { - props.onNodeClickTs(item); - }; - const { nodes, links } = feedTree; return ( -
+
{/* Suppressing this for now as we don't know how which key events to hook for changing orientations */} @@ -385,15 +374,6 @@ const FeedTree = (props: OwnProps) => { /> )}
- - {mode === false && ( -
- -
- )}
@@ -429,7 +409,6 @@ const FeedTree = (props: OwnProps) => { position={{ x, y }} parent={parent} onNodeClick={handleNodeClick} - onNodeClickTs={handleNodeClickTs} orientation={orientation} toggleLabel={feedState.toggleLabel} overlayScale={ diff --git a/src/components/FeedTree/Node.tsx b/src/components/FeedTree/Node.tsx index 8dbd26961..be2d25eae 100644 --- a/src/components/FeedTree/Node.tsx +++ b/src/components/FeedTree/Node.tsx @@ -30,8 +30,6 @@ type NodeWrapperProps = { position: Point; parent: HierarchyPointNode | null; onNodeClick: (node: any) => void; - onNodeClickTs: (node: PluginInstance) => void; - orientation: "horizontal" | "vertical"; overlayScale?: FeedTreeScaleType; toggleLabel: boolean; @@ -63,7 +61,6 @@ const Node = (props: NodeProps) => { position, data, onNodeClick, - onNodeClickTs, toggleLabel, status, currentId, @@ -72,8 +69,7 @@ const Node = (props: NodeProps) => { const [api, contextHolder] = notification.useNotification(); const dispatch = useDispatch(); - const tsNodes = useTypedSelector((state) => state.tsPlugins.tsNodes); - const mode = useTypedSelector((state) => state.tsPlugins.treeMode); + const pluginInstances = useTypedSelector( (state) => state.instance.pluginInstances.data, ); @@ -127,15 +123,6 @@ const Node = (props: NodeProps) => { statusClass = "search"; } - if (mode === false && tsNodes && tsNodes.length > 0) { - if (data.item?.data.id) { - const node = tsNodes.find((node) => node.data.id === data.item?.data.id); - if (node) { - tsClass = "graphSelected"; - } - } - } - const previous_id = data.item?.data?.previous_id; if (previous_id) { const parentNode = pluginInstances?.find( @@ -206,6 +193,7 @@ const Node = (props: NodeProps) => { } return pipelines; } catch (error) { + // biome-ignore lint/complexity/noUselessCatch: throw error; } } @@ -269,13 +257,7 @@ const Node = (props: NodeProps) => { id={`${data.id}`} ref={nodeRef} onClick={() => { - if (data.item) { - if (mode === false) { - onNodeClickTs(data.item); - } else { - onNodeClick(data); - } - } + onNodeClick(data); }} > void; onNodeClick: (node: any) => void; } @@ -19,7 +18,7 @@ export type TSID = { }; const ParentComponent = (props: ParentComponentProps) => { - const { onNodeClick, onNodeClickTs } = props; + const { onNodeClick } = props; const pluginInstances = useTypedSelector( (state) => state.instance.pluginInstances, ); @@ -46,7 +45,6 @@ const ParentComponent = (props: ParentComponentProps) => { return data && data.length > 0 ? ( void; - onNodeClickTs: (node: PluginInstance) => void; translate?: Point; scaleExtent: { min: number; diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 21878b0a5..6cbe8b8f0 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -14,10 +14,11 @@ import { ToggleGroup, ToggleGroupItem, type ToggleGroupItemProps, + Tooltip, } from "@patternfly/react-core"; import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; import { useQuery, useQueryClient } from "@tanstack/react-query"; -import { Tooltip, Typography } from "antd"; +import { Typography } from "../Antd"; import { format } from "date-fns"; import type React from "react"; import { useContext, useEffect, useState } from "react"; @@ -454,11 +455,7 @@ const DonutUtilization = (props: { const mode = isDarkTheme ? "dark" : "light"; return ( - +
{ - dispatch(addTSNodes(node)); - }; - const handleDrawerAction = (mode: string) => { return ( {!currentLayout ? ( - + ) : ( )} diff --git a/src/components/NewLibrary/components/Cart.tsx b/src/components/NewLibrary/components/Cart.tsx index 179cef4d6..ffc6b9553 100644 --- a/src/components/NewLibrary/components/Cart.tsx +++ b/src/components/NewLibrary/components/Cart.tsx @@ -1,5 +1,5 @@ import { Button, Text, Tooltip } from "@patternfly/react-core"; -import { Drawer, List, Popconfirm, Space } from "antd"; +import { Drawer, List, Popconfirm, Space } from "../../Antd"; import { isEmpty } from "lodash"; import { useDispatch } from "react-redux"; import { Link } from "react-router-dom"; diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index 76168d147..5a2fb8ac9 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -1,6 +1,6 @@ import type { FileBrowserFolderList } from "@fnndsc/chrisapi"; import type { DefaultError } from "@tanstack/react-query"; -import { Alert, Dropdown, type MenuProps } from "antd"; +import { Alert, Dropdown, type MenuProps } from "../../Antd"; import { ArchiveIcon, CodeBranchIcon, diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index 2d19a8fe4..56d118b60 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -14,7 +14,7 @@ import { SplitItem, Tooltip, } from "@patternfly/react-core"; -import { notification } from "antd"; +import { notification } from "../../Antd"; import { isEmpty } from "lodash"; import type React from "react"; import { useContext, useEffect, useState } from "react"; diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index d31df0712..43f5bfad1 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -14,7 +14,7 @@ import { Tooltip, } from "@patternfly/react-core"; import type { DefaultError } from "@tanstack/react-query"; -import { Alert, Dropdown, Spin } from "antd"; +import { Alert, Dropdown, Spin } from "../../Antd"; import React, { Fragment, useEffect, diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index 6ecde4082..dee761285 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -9,7 +9,7 @@ import { useQuery, useQueryClient, } from "@tanstack/react-query"; -import { Alert, Typography } from "antd"; +import { Alert, Typography } from "../Antd"; import { debounce } from "lodash"; import { useEffect, useRef, useState } from "react"; import { useLocation, useNavigate } from "react-router"; diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index e161600b7..17823d4f8 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -1,6 +1,6 @@ import type { FileBrowserFolderList } from "@fnndsc/chrisapi"; import { useMutation } from "@tanstack/react-query"; -import { notification } from "antd"; +import { notification } from "../../Antd"; import { isEmpty } from "lodash"; import { useContext, useRef, useState } from "react"; import { useDispatch } from "react-redux"; diff --git a/src/components/NiivueDatasetViewer/content/infoForPageHeader.tsx b/src/components/NiivueDatasetViewer/content/infoForPageHeader.tsx index bb593e1b6..98ceffb4a 100644 --- a/src/components/NiivueDatasetViewer/content/infoForPageHeader.tsx +++ b/src/components/NiivueDatasetViewer/content/infoForPageHeader.tsx @@ -1,6 +1,6 @@ import { InfoIcon } from "../../Common"; -import { Typography } from "antd"; -import React from "react"; +import { Typography } from "../../Antd"; +import type React from "react"; const InfoForPageHeader: React.FC = () => ( { if (!pluginItem) throw new Error("Failed to set title..."); dispatch(setPluginTitle(pluginItem)); } catch (e) { + // biome-ignore lint/complexity/noUselessCatch: throw e; } }; diff --git a/src/components/NodeDetails/Status.tsx b/src/components/NodeDetails/Status.tsx index a39b0c3f9..061c927d9 100644 --- a/src/components/NodeDetails/Status.tsx +++ b/src/components/NodeDetails/Status.tsx @@ -1,4 +1,4 @@ -import { Steps, Spin } from "antd"; +import { Steps, Spin } from "../Antd"; import usePluginInstanceResource from "./usePluginInstanceResource"; const Status = () => { diff --git a/src/components/Pacs/components/PatientCard.tsx b/src/components/Pacs/components/PatientCard.tsx index 43c49d547..66e9b4855 100644 --- a/src/components/Pacs/components/PatientCard.tsx +++ b/src/components/Pacs/components/PatientCard.tsx @@ -6,7 +6,7 @@ import { Skeleton, Tooltip, } from "@patternfly/react-core"; -import { notification } from "antd"; +import { notification } from "../../Antd"; import { format, parse } from "date-fns"; import { useContext, useEffect, useState } from "react"; import { PacsQueryContext } from "../context"; diff --git a/src/components/Pacs/components/SeriesCard.tsx b/src/components/Pacs/components/SeriesCard.tsx index 6b925ed4a..7e5d72bab 100644 --- a/src/components/Pacs/components/SeriesCard.tsx +++ b/src/components/Pacs/components/SeriesCard.tsx @@ -18,7 +18,7 @@ import { pluralize, } from "@patternfly/react-core"; import { useMutation, useQuery } from "@tanstack/react-query"; -import { Alert } from "antd"; +import { Alert } from "../../Antd"; import axios from "axios"; import PQueue from "p-queue"; import { useContext, useEffect, useState } from "react"; diff --git a/src/components/Pacs/components/SettingsComponents.tsx b/src/components/Pacs/components/SettingsComponents.tsx index 23f8b394d..0ed27e8ae 100644 --- a/src/components/Pacs/components/SettingsComponents.tsx +++ b/src/components/Pacs/components/SettingsComponents.tsx @@ -1,6 +1,6 @@ import { Button, Checkbox } from "@patternfly/react-core"; import { useQueryClient } from "@tanstack/react-query"; -import { Popover } from "antd"; +import { Popover } from "../../Antd"; import axios from "axios"; import { useState } from "react"; import ChrisApiClient from "../../../api/chrisapiclient"; diff --git a/src/components/Pacs/index.tsx b/src/components/Pacs/index.tsx index 04bc6c70f..63f16cb2d 100644 --- a/src/components/Pacs/index.tsx +++ b/src/components/Pacs/index.tsx @@ -12,7 +12,7 @@ import { TextInput, } from "@patternfly/react-core"; import SearchIcon from "@patternfly/react-icons/dist/esm/icons/search-icon"; -import { Alert, Spin } from "antd"; +import { Alert, Spin } from "../Antd"; import * as React from "react"; import { useDispatch } from "react-redux"; import { useNavigate } from "react-router"; diff --git a/src/components/PipelinesCopy/CodeBlockComponent.tsx b/src/components/PipelinesCopy/CodeBlockComponent.tsx index 25f79b6ea..9983b58d7 100644 --- a/src/components/PipelinesCopy/CodeBlockComponent.tsx +++ b/src/components/PipelinesCopy/CodeBlockComponent.tsx @@ -1,4 +1,4 @@ -import { Pipeline } from "@fnndsc/chrisapi"; +import type { Pipeline } from "@fnndsc/chrisapi"; import { ClipboardCopyButton, CodeBlock, @@ -7,7 +7,7 @@ import { clipboardCopyFunc, } from "@patternfly/react-core"; import { useQuery } from "@tanstack/react-query"; -import { Alert, Form } from "antd"; +import { Alert, Form } from "../Antd"; import { useContext, useState } from "react"; import { EmptyStateComponent, SpinContainer } from "../Common"; import { PipelineContext } from "./context"; diff --git a/src/components/PipelinesCopy/ComputeListForSingleCompute.tsx b/src/components/PipelinesCopy/ComputeListForSingleCompute.tsx index b5ee4a2f9..71d686018 100644 --- a/src/components/PipelinesCopy/ComputeListForSingleCompute.tsx +++ b/src/components/PipelinesCopy/ComputeListForSingleCompute.tsx @@ -1,5 +1,5 @@ -import { Pipeline } from "@fnndsc/chrisapi"; -import { Form } from "antd"; +import type { Pipeline } from "@fnndsc/chrisapi"; +import { Form } from "../Antd"; import { useContext } from "react"; import { EmptyStateComponent } from "../Common"; import ListCompute from "./ListCompute"; diff --git a/src/components/PipelinesCopy/ListCompute.tsx b/src/components/PipelinesCopy/ListCompute.tsx index 3670b14e0..03ce07eb8 100644 --- a/src/components/PipelinesCopy/ListCompute.tsx +++ b/src/components/PipelinesCopy/ListCompute.tsx @@ -1,6 +1,5 @@ -import { ComputeResource } from "@fnndsc/chrisapi"; -import { Avatar, Checkbox, List } from "antd"; - +import type { ComputeResource } from "@fnndsc/chrisapi"; +import { Avatar, Checkbox, List } from "../Antd"; import { stringToColour } from "../CreateFeed/utils"; type OwnProps = { diff --git a/src/components/PipelinesCopy/NodeData.tsx b/src/components/PipelinesCopy/NodeData.tsx index 7d536f9b2..ec07e5678 100644 --- a/src/components/PipelinesCopy/NodeData.tsx +++ b/src/components/PipelinesCopy/NodeData.tsx @@ -1,9 +1,9 @@ import { useQuery } from "@tanstack/react-query"; -import { Alert } from "antd"; -import { HierarchyPointNode } from "d3-hierarchy"; +import { Alert } from "../Antd"; +import type { HierarchyPointNode } from "d3-hierarchy"; import { select } from "d3-selection"; import React, { useContext, useEffect, useRef } from "react"; -import { TreeNode, fetchComputeInfo } from "../../api/common"; +import { type TreeNode, fetchComputeInfo } from "../../api/common"; import { stringToColour } from "../CreateFeed/utils"; import { ThemeContext } from "../DarkTheme/useTheme"; import { PipelineContext, Types, type ComputeInfoPayload } from "./context"; diff --git a/src/components/PipelinesCopy/PipelineUpload.tsx b/src/components/PipelinesCopy/PipelineUpload.tsx index 62f63336b..6be197c44 100644 --- a/src/components/PipelinesCopy/PipelineUpload.tsx +++ b/src/components/PipelinesCopy/PipelineUpload.tsx @@ -1,6 +1,6 @@ import Client from "@fnndsc/chrisapi"; import { Button } from "@patternfly/react-core"; -import { Alert } from "antd"; +import { Alert } from "../Antd"; import axios from "axios"; import { isEmpty } from "lodash"; import { useRef, useState } from "react"; diff --git a/src/components/PipelinesCopy/SelectAllCompute.tsx b/src/components/PipelinesCopy/SelectAllCompute.tsx index 62262fe37..488e25d23 100644 --- a/src/components/PipelinesCopy/SelectAllCompute.tsx +++ b/src/components/PipelinesCopy/SelectAllCompute.tsx @@ -1,13 +1,13 @@ -import { ComputeResource, Pipeline } from "@fnndsc/chrisapi"; +import type { ComputeResource, Pipeline } from "@fnndsc/chrisapi"; import { MenuToggle, - MenuToggleElement, + type MenuToggleElement, Select, SelectList, SelectOption, } from "@patternfly/react-core"; import { useQuery } from "@tanstack/react-query"; -import { Avatar } from "antd"; +import { Avatar } from "../Antd"; import React, { useContext } from "react"; import ChrisAPIClient from "../../api/chrisapiclient"; import { fetchResource } from "../../api/common"; diff --git a/src/components/PipelinesCopy/TitleChange.tsx b/src/components/PipelinesCopy/TitleChange.tsx index 855dab364..76f6049b3 100644 --- a/src/components/PipelinesCopy/TitleChange.tsx +++ b/src/components/PipelinesCopy/TitleChange.tsx @@ -1,7 +1,8 @@ -import { Pipeline, PluginPiping } from "@fnndsc/chrisapi"; -import { Alert, Button, Form, Input, Space } from "antd"; +import type { Pipeline, PluginPiping } from "@fnndsc/chrisapi"; +import { Alert, Form, Space } from "../Antd"; import { useContext, useEffect, useState } from "react"; import { PipelineContext, Types } from "./context"; +import { TextInput, Button } from "@patternfly/react-core"; type OwnProps = { currentPipeline: Pipeline; @@ -61,8 +62,11 @@ function TitleChange({ currentPipeline }: OwnProps) {
- setValue(e.target.value)} value={value} /> - diff --git a/src/components/PipelinesCopy/index.tsx b/src/components/PipelinesCopy/index.tsx index 5f5194ce5..a7da63cea 100644 --- a/src/components/PipelinesCopy/index.tsx +++ b/src/components/PipelinesCopy/index.tsx @@ -8,7 +8,7 @@ import { } from "@patternfly/react-core"; import SearchIcon from "@patternfly/react-icons/dist/esm/icons/search-icon"; import { useQuery, useQueryClient } from "@tanstack/react-query"; -import { Alert, Collapse } from "antd"; +import { Alert, Collapse } from "../Antd"; import { useContext, useState } from "react"; import { fetchPipelines, fetchResources } from "../../api/common"; import { EmptyStateComponent, SpinContainer } from "../Common"; diff --git a/src/components/PluginCatalog/index.tsx b/src/components/PluginCatalog/index.tsx index f61d45c52..ad618d7fb 100644 --- a/src/components/PluginCatalog/index.tsx +++ b/src/components/PluginCatalog/index.tsx @@ -1,6 +1,6 @@ import React from "react"; import { useDispatch } from "react-redux"; -import { Typography } from "antd"; +import { Typography } from "../Antd"; import WrapperConnect from "../Wrapper"; import PluginCatalog from "./PluginCatalog"; import { InfoIcon } from "../Common/"; diff --git a/src/components/PluginInstall/index.tsx b/src/components/PluginInstall/index.tsx index 016b04b86..dbca251e2 100644 --- a/src/components/PluginInstall/index.tsx +++ b/src/components/PluginInstall/index.tsx @@ -6,7 +6,7 @@ import { LoginPage, } from "@patternfly/react-core"; import { useMutation } from "@tanstack/react-query"; -import { Alert } from "antd"; +import { Alert } from "../Antd"; import React from "react"; import { Cookies, useCookies } from "react-cookie"; import { useNavigate } from "react-router"; diff --git a/src/components/Preview/FileDetailView.tsx b/src/components/Preview/FileDetailView.tsx index 27ce38b9a..894faa080 100644 --- a/src/components/Preview/FileDetailView.tsx +++ b/src/components/Preview/FileDetailView.tsx @@ -9,7 +9,7 @@ import { } from "@patternfly/react-core"; import ResetIcon from "@patternfly/react-icons/dist/esm/icons/history-icon"; import { useMutation, useQuery } from "@tanstack/react-query"; -import { Alert } from "antd"; +import { Alert } from "../Antd"; import * as dicomParser from "dicom-parser"; import React, { Fragment, diff --git a/src/components/Preview/HelperComponent.tsx b/src/components/Preview/HelperComponent.tsx index 29772a307..513b5494c 100644 --- a/src/components/Preview/HelperComponent.tsx +++ b/src/components/Preview/HelperComponent.tsx @@ -1,9 +1,9 @@ -import { ReactNode } from "react"; import { Button, Modal, ModalVariant, Tooltip } from "@patternfly/react-core"; -import { FeedFile } from "@fnndsc/chrisapi"; +import type { ReactNode } from "react"; +import type { FileBrowserFolderFile } from "@fnndsc/chrisapi"; import ReactJson from "react-json-view"; +import { Alert } from "../Antd"; import { SpinContainer } from "../Common"; -import { Alert } from "antd"; export const GalleryButtonContainer = ({ handleClick, @@ -54,7 +54,7 @@ export const TagInfoModal = ({ handleModalToggle: (event: string, value: boolean) => void; parsingError: string; output?: any[]; - file?: FeedFile; + file?: FileBrowserFolderFile; }) => { return ( - action(TSPluginTypes.ADD_TS_NODE, node); -export const deleteTsNode = (node: PluginInstance) => - action(TSPluginTypes.DELETE_TS_NODE, node); - -export const switchTreeMode = (mode: boolean) => - action(TSPluginTypes.SWITCH_TREE_MODE, mode); - -export const resetTsNodes = () => action(TSPluginTypes.RESET_TS_NODES); diff --git a/src/store/tsplugins/reducer.ts b/src/store/tsplugins/reducer.ts deleted file mode 100644 index fa4dfe923..000000000 --- a/src/store/tsplugins/reducer.ts +++ /dev/null @@ -1,56 +0,0 @@ -import { produce } from "immer"; -import type { Reducer } from "redux"; -import { type ITSPluginState, TSPluginTypes } from "./types"; - -export const initialState: ITSPluginState = { - treeMode: true, - tsNodes: undefined, -}; - -const reducer: Reducer = produce( - (draft: ITSPluginState, action: typeof TSPluginTypes) => { - switch (action.type) { - case TSPluginTypes.ADD_TS_NODE: { - if (!draft.tsNodes) { - draft.tsNodes = [action.payload]; - } else { - const nodeIndex = draft.tsNodes.findIndex( - (node) => node.data.id === action.payload.data.id, - ); - - if (nodeIndex !== -1) { - draft.tsNodes.splice(nodeIndex, 1); - } else { - draft.tsNodes.push(action.payload); - } - } - break; - } - - case TSPluginTypes.DELETE_TS_NODE: { - if (draft.tsNodes) { - draft.tsNodes = draft.tsNodes.filter( - (node) => node.data.id !== action.payload.data.id, - ); - } - break; - } - - case TSPluginTypes.SWITCH_TREE_MODE: { - draft.treeMode = action.payload; - draft.tsNodes = []; - break; - } - - case TSPluginTypes.RESET_TS_NODES: { - return initialState; - } - - default: - return draft; - } - }, - initialState, -); - -export { reducer as tsPluginsReducer }; diff --git a/src/store/tsplugins/types.ts b/src/store/tsplugins/types.ts deleted file mode 100644 index 61d4e53ef..000000000 --- a/src/store/tsplugins/types.ts +++ /dev/null @@ -1,16 +0,0 @@ -import type { PluginInstance } from "@fnndsc/chrisapi"; -import keyMirror from "keymirror"; - -export interface ITSPluginState { - tsNodes?: PluginInstance[]; - treeMode: boolean; -} - -export const TSPluginTypes = keyMirror({ - GET_FEED_TREE_PROP: null, - SWITCH_TREE_MODE: null, - ADD_TS_NODE: null, - DELETE_TS_NODE: null, - SET_LAYOUT: null, - RESET_TS_NODES: null, -}); diff --git a/tsconfig.app.json b/tsconfig.app.json new file mode 100644 index 000000000..326b830f3 --- /dev/null +++ b/tsconfig.app.json @@ -0,0 +1,26 @@ +{ + "compilerOptions": { + "target": "ES2020", + "useDefineForClassFields": true, + "lib": ["ES2020", "DOM", "DOM.Iterable"], + "module": "ESNext", + "skipLibCheck": true, + + /* Bundler mode */ + "moduleResolution": "bundler", + "allowImportingTsExtensions": true, + "resolveJsonModule": true, + "isolatedModules": true, + "noEmit": true, + "jsx": "react-jsx", + + /* Linting */ + "strict": true, + "noUnusedLocals": true, + "noUnusedParameters": true, + "noFallthroughCasesInSwitch": true, + "noImplicitAny":true, + }, + "include": ["src"] + } + \ No newline at end of file diff --git a/tsconfig.json b/tsconfig.json index 28c51cf9f..1ffef600d 100644 --- a/tsconfig.json +++ b/tsconfig.json @@ -1,25 +1,7 @@ { - "compilerOptions": { - "target": "ES2021", - "useDefineForClassFields": true, - "lib": ["ES2021", "DOM", "DOM.Iterable"], - "module": "ESNext", - "skipLibCheck": true, - - /* Bundler mode */ - "moduleResolution": "bundler", - "allowImportingTsExtensions": true, - "resolveJsonModule": true, - "isolatedModules": true, - "noEmit": true, - "jsx": "react-jsx", - - /* Linting */ - "strict": true, - "noUnusedLocals": true, - "noUnusedParameters": true, - "noFallthroughCasesInSwitch": true, - "noImplicitAny":true, - }, - "references": [{ "path": "./tsconfig.node.json" }] + "files": [], + "references": [ + { "path": "./tsconfig.app.json" }, + { "path": "./tsconfig.node.json" } + ] } diff --git a/tsconfig.node.json b/tsconfig.node.json index e5dab3327..0d3d71446 100644 --- a/tsconfig.node.json +++ b/tsconfig.node.json @@ -1,11 +1,22 @@ { "compilerOptions": { - "composite": true, - "skipLibCheck": true, + "target": "ES2022", + "lib": ["ES2023"], "module": "ESNext", + "skipLibCheck": true, + + /* Bundler mode */ "moduleResolution": "bundler", - "noImplicitAny":true, - "allowSyntheticDefaultImports": true + "allowImportingTsExtensions": true, + "isolatedModules": true, + "moduleDetection": "force", + "noEmit": true, + + /* Linting */ + "strict": true, + "noUnusedLocals": true, + "noUnusedParameters": true, + "noFallthroughCasesInSwitch": true }, "include": ["vite.config.ts"] } From 680226fc2b64b56d08aed42b75182cce26e5ea96 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 12 Aug 2024 13:17:45 -0400 Subject: [PATCH 101/337] feat: Cleanup --- package-lock.json | 586 +++++++++--------- package.json | 2 +- src/components/Feeds/FeedListView.tsx | 2 + .../NewLibrary/utils/useDeletePayload.tsx | 1 + .../Preview/displays/DcmDisplay.tsx | 29 +- .../Preview/displays/IframeDisplay.tsx | 2 +- .../Preview/displays/ImageDisplay.tsx | 2 +- .../Preview/displays/JsonDisplay.tsx | 4 +- .../Preview/displays/PdfDisplay.tsx | 4 +- .../Preview/displays/TextDisplay.tsx | 2 +- .../Preview/displays/VideoDisplay.tsx | 2 +- .../Preview/displays/XtkDisplay.tsx | 9 +- .../Preview/displays/dicomUtils/utils.ts | 24 +- 13 files changed, 343 insertions(+), 326 deletions(-) diff --git a/package-lock.json b/package-lock.json index fedd0e788..2adf0c3e3 100644 --- a/package-lock.json +++ b/package-lock.json @@ -23,7 +23,7 @@ "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", "@types/d3-zoom": "^3.0.8", - 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"@rollup/rollup-android-arm-eabi": "4.19.1", - "@rollup/rollup-android-arm64": "4.19.1", - "@rollup/rollup-darwin-arm64": "4.19.1", - "@rollup/rollup-darwin-x64": "4.19.1", - "@rollup/rollup-linux-arm-gnueabihf": "4.19.1", - "@rollup/rollup-linux-arm-musleabihf": "4.19.1", - "@rollup/rollup-linux-arm64-gnu": "4.19.1", - "@rollup/rollup-linux-arm64-musl": "4.19.1", - "@rollup/rollup-linux-powerpc64le-gnu": "4.19.1", - "@rollup/rollup-linux-riscv64-gnu": "4.19.1", - "@rollup/rollup-linux-s390x-gnu": "4.19.1", - "@rollup/rollup-linux-x64-gnu": "4.19.1", - "@rollup/rollup-linux-x64-musl": "4.19.1", - "@rollup/rollup-win32-arm64-msvc": "4.19.1", - "@rollup/rollup-win32-ia32-msvc": "4.19.1", - "@rollup/rollup-win32-x64-msvc": "4.19.1", + "@rollup/rollup-android-arm-eabi": "4.20.0", + "@rollup/rollup-android-arm64": "4.20.0", + "@rollup/rollup-darwin-arm64": "4.20.0", + "@rollup/rollup-darwin-x64": "4.20.0", + "@rollup/rollup-linux-arm-gnueabihf": "4.20.0", + "@rollup/rollup-linux-arm-musleabihf": "4.20.0", + "@rollup/rollup-linux-arm64-gnu": "4.20.0", + "@rollup/rollup-linux-arm64-musl": "4.20.0", + "@rollup/rollup-linux-powerpc64le-gnu": "4.20.0", + "@rollup/rollup-linux-riscv64-gnu": "4.20.0", + "@rollup/rollup-linux-s390x-gnu": "4.20.0", + "@rollup/rollup-linux-x64-gnu": "4.20.0", + "@rollup/rollup-linux-x64-musl": "4.20.0", + "@rollup/rollup-win32-arm64-msvc": "4.20.0", + "@rollup/rollup-win32-ia32-msvc": "4.20.0", + "@rollup/rollup-win32-x64-msvc": "4.20.0", "fsevents": "~2.3.2" } }, @@ -11513,7 +11527,6 @@ "version": "7.6.3", "resolved": "https://registry.npmjs.org/semver/-/semver-7.6.3.tgz", "integrity": "sha512-oVekP1cKtI+CTDvHWYFUcMtsK/00wmAEfyqKfNdARm8u1wNVhSgaX7A8d4UuIlUI5e84iEwOhs7ZPYRmzU9U6A==", - "dev": true, "license": "ISC", "bin": { "semver": "bin/semver.js" @@ -11615,7 +11628,6 @@ "version": "3.0.7", "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.7.tgz", "integrity": "sha512-wnD2ZE+l+SPC/uoS0vXeE9L1+0wuaMqKlfz9AMUo38JsyLSBWSFcHR1Rri62LZc12vLr1gb3jl7iwQhgwpAbGQ==", - "dev": true, "license": "ISC" }, "node_modules/sirv": { @@ -11888,7 +11900,6 @@ "version": "7.2.0", "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-7.2.0.tgz", "integrity": "sha512-qpCAvRl9stuOHveKsn7HncJRvv501qIacKzQlO/+Lwxc9+0q2wLyv4Dfvt80/DPn2pqOBsJdDiogXGR9+OvwRw==", - "dev": true, "license": "MIT", "dependencies": { "has-flag": "^4.0.0" @@ -11945,9 +11956,9 @@ } }, "node_modules/tinybench": { - "version": "2.8.0", - "resolved": "https://registry.npmjs.org/tinybench/-/tinybench-2.8.0.tgz", - "integrity": "sha512-1/eK7zUnIklz4JUUlL+658n58XO2hHLQfSk1Zf2LKieUjxidN16eKFEoDEfjHc3ohofSSqK3X5yO6VGb6iW8Lw==", + "version": "2.9.0", + "resolved": "https://registry.npmjs.org/tinybench/-/tinybench-2.9.0.tgz", + "integrity": "sha512-0+DUvqWMValLmha6lr4kD8iAMK1HzV0/aKnCtWb9v9641TnP/MFb7Pc2bxoxQjTXAErryXVgUOfv2YqNllqGeg==", "dev": true, "license": "MIT" }, @@ -12609,14 +12620,14 @@ } }, "node_modules/vite": { - "version": "5.3.5", - "resolved": "https://registry.npmjs.org/vite/-/vite-5.3.5.tgz", - "integrity": "sha512-MdjglKR6AQXQb9JGiS7Rc2wC6uMjcm7Go/NHNO63EwiJXfuk9PgqiP/n5IDJCziMkfw9n4Ubp7lttNwz+8ZVKA==", + "version": "5.4.0", + "resolved": "https://registry.npmjs.org/vite/-/vite-5.4.0.tgz", + "integrity": "sha512-5xokfMX0PIiwCMCMb9ZJcMyh5wbBun0zUzKib+L65vAZ8GY9ePZMXxFrHbr/Kyll2+LSCY7xtERPpxkBDKngwg==", "dev": true, "license": "MIT", "dependencies": { "esbuild": "^0.21.3", - "postcss": "^8.4.39", + "postcss": "^8.4.40", "rollup": "^4.13.0" }, "bin": { @@ -12636,6 +12647,7 @@ "less": "*", "lightningcss": "^1.21.0", "sass": "*", + "sass-embedded": "*", "stylus": "*", "sugarss": "*", "terser": "^5.4.0" @@ -12653,6 +12665,9 @@ "sass": { "optional": true }, + "sass-embedded": { + "optional": true + }, "stylus": { "optional": true }, @@ -12896,7 +12911,6 @@ "version": "2.0.2", "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz", "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==", - "dev": true, "license": "ISC", "dependencies": { "isexe": "^2.0.0" @@ -13027,7 +13041,6 @@ "version": "3.0.3", "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-3.0.3.tgz", "integrity": "sha512-AvHcyZ5JnSfq3ioSyjrBkH9yW4m7Ayk8/9My/DD9onKeu/94fwrMocemO2QAJFAlnnDN+ZDS+ZjAR5ua1/PV/Q==", - "dev": true, "license": "ISC", "dependencies": { "imurmurhash": "^0.1.4", @@ -13040,7 +13053,6 @@ "version": "3.1.5", "resolved": "https://registry.npmjs.org/typedarray-to-buffer/-/typedarray-to-buffer-3.1.5.tgz", "integrity": "sha512-zdu8XMNEDepKKR+XYOXAVPtWui0ly0NtohUscw+UmaHiAWT8hrV1rr//H6V+0DvJ3OQ19S979M0laLfX8rm82Q==", - "dev": true, "license": "MIT", "dependencies": { "is-typedarray": "^1.0.0" diff --git a/package.json b/package.json index 71485d1ac..e0921ff14 100644 --- a/package.json +++ b/package.json @@ -39,7 +39,7 @@ "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", "@types/d3-zoom": "^3.0.8", - "antd": "^5.19.2", + "antd": "^5.20.1", "axios": "^1.7.2", "d3-hierarchy": "^1.1.9", "d3-selection": "^3.0.0", diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 6cbe8b8f0..71d48f3d0 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -68,6 +68,7 @@ const TableSelectable: React.FC = () => { queryKey: ["feeds", perPage, page, type, search, searchType], queryFn: () => fetchFeeds(searchFolderData), enabled: type === "private", + refetchOnMount: true, }); const { @@ -78,6 +79,7 @@ const TableSelectable: React.FC = () => { queryKey: ["publicFeeds", perPage, page, type, search, searchType], queryFn: () => fetchPublicFeeds(searchFolderData), enabled: type === "public", + refetchOnMount: true, }); const feedsToDisplay = type === "private" ? data?.feeds || [] : publicFeeds?.feeds || []; diff --git a/src/components/NewLibrary/utils/useDeletePayload.tsx b/src/components/NewLibrary/utils/useDeletePayload.tsx index 9714a2829..ad1aac809 100644 --- a/src/components/NewLibrary/utils/useDeletePayload.tsx +++ b/src/components/NewLibrary/utils/useDeletePayload.tsx @@ -81,6 +81,7 @@ const useDeletePayload = (inValidateFolders: () => void, api: any) => { if (notificationKey) { api.destroy(notificationKey); } + api.success({ message: "Deletion Successful", description: "Selected files and folders were successfully deleted.", diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 5bd39cde4..ca9b30767 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -1,27 +1,28 @@ -import { useEffect, useState, useRef } from "react"; +import type { RenderingEngine } from "@cornerstonejs/core"; +import type { FileBrowserFolderFile } from "@fnndsc/chrisapi"; +import { useQuery } from "@tanstack/react-query"; +import { useEffect, useRef, useState } from "react"; +import { v4 } from "uuid"; import { FileViewerModel, - IFileBlob, + type IFileBlob, getFileExtension, } from "../../../api/model"; +import { SpinContainer } from "../../Common"; +import useSize from "../../FeedTree/useSize"; +import type { ActionState } from "../FileDetailView"; import { - displayDicomImage, - loadDicomImage, - basicInit, - handleEvents, type IStackViewport, - setUpTooling, + basicInit, cleanupCornerstoneTooling, + displayDicomImage, + handleEvents, + loadDicomImage, registerToolingOnce, removeTools, + setUpTooling, } from "./dicomUtils/utils"; -import useSize from "../../FeedTree/useSize"; -import { type ActionState } from "../FileDetailView"; import { _loadImageIntoBuffer } from "./dicomUtils/webImageLoader"; -import { RenderingEngine } from "@cornerstonejs/core"; -import { v4 } from "uuid"; -import { useQuery } from "@tanstack/react-query"; -import { SpinContainer } from "../../Common"; export type DcmImageProps = { fileItem: IFileBlob; @@ -88,7 +89,7 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { imageID = await loadDicomImage(blob); } else { const fileviewer = new FileViewerModel(); - const fileName = fileviewer.getFileName(file); + const fileName = fileviewer.getFileName(file as FileBrowserFolderFile); imageID = `web:${file.url}${fileName}`; } const { viewport, renderingEngine: newRenderingEngine } = diff --git a/src/components/Preview/displays/IframeDisplay.tsx b/src/components/Preview/displays/IframeDisplay.tsx index 3c930a2e4..49744342e 100644 --- a/src/components/Preview/displays/IframeDisplay.tsx +++ b/src/components/Preview/displays/IframeDisplay.tsx @@ -1,5 +1,5 @@ import React, { Fragment } from "react"; -import { IFileBlob } from "../../../api/model"; +import type { IFileBlob } from "../../../api/model"; type AllProps = { fileItem: IFileBlob; }; diff --git a/src/components/Preview/displays/ImageDisplay.tsx b/src/components/Preview/displays/ImageDisplay.tsx index ea97f3de4..a028298ba 100644 --- a/src/components/Preview/displays/ImageDisplay.tsx +++ b/src/components/Preview/displays/ImageDisplay.tsx @@ -1,5 +1,5 @@ import React from "react"; -import { IFileBlob } from "../../../api/model"; +import type { IFileBlob } from "../../../api/model"; type AllProps = { fileItem: IFileBlob; diff --git a/src/components/Preview/displays/JsonDisplay.tsx b/src/components/Preview/displays/JsonDisplay.tsx index fb6b7cd31..37eab7d37 100644 --- a/src/components/Preview/displays/JsonDisplay.tsx +++ b/src/components/Preview/displays/JsonDisplay.tsx @@ -1,7 +1,7 @@ +import { Text } from "@patternfly/react-core"; import React, { useState, useContext, useEffect, useRef } from "react"; import ReactJSON from "react-json-view"; -import { IFileBlob } from "../../../api/model"; -import { Text } from "@patternfly/react-core"; +import type { IFileBlob } from "../../../api/model"; import { ThemeContext } from "../../DarkTheme/useTheme"; type AllProps = { diff --git a/src/components/Preview/displays/PdfDisplay.tsx b/src/components/Preview/displays/PdfDisplay.tsx index 7a3148273..e2e4615bc 100644 --- a/src/components/Preview/displays/PdfDisplay.tsx +++ b/src/components/Preview/displays/PdfDisplay.tsx @@ -1,5 +1,5 @@ -import React from "react"; -import { IFileBlob } from "../../../api/model"; +import type React from "react"; +import type { IFileBlob } from "../../../api/model"; type AllProps = { fileItem: IFileBlob; diff --git a/src/components/Preview/displays/TextDisplay.tsx b/src/components/Preview/displays/TextDisplay.tsx index f388bac77..7dbf53a53 100644 --- a/src/components/Preview/displays/TextDisplay.tsx +++ b/src/components/Preview/displays/TextDisplay.tsx @@ -1,5 +1,5 @@ import React, { Fragment } from "react"; -import { IFileBlob } from "../../../api/model"; +import type { IFileBlob } from "../../../api/model"; import useSize from "../../FeedTree/useSize"; type AllProps = { diff --git a/src/components/Preview/displays/VideoDisplay.tsx b/src/components/Preview/displays/VideoDisplay.tsx index 52c9359f1..15994332f 100644 --- a/src/components/Preview/displays/VideoDisplay.tsx +++ b/src/components/Preview/displays/VideoDisplay.tsx @@ -1,4 +1,4 @@ -import { IFileBlob } from "../../../api/model"; +import type { IFileBlob } from "../../../api/model"; type AllProps = { fileItem: IFileBlob; diff --git a/src/components/Preview/displays/XtkDisplay.tsx b/src/components/Preview/displays/XtkDisplay.tsx index 78c377230..48dc5c056 100644 --- a/src/components/Preview/displays/XtkDisplay.tsx +++ b/src/components/Preview/displays/XtkDisplay.tsx @@ -1,5 +1,6 @@ -import React, { useEffect, useRef } from "react"; -import { IFileBlob } from "../../../api/model"; +import type React from "react"; +import { useEffect, useRef } from "react"; +import type { IFileBlob } from "../../../api/model"; import { getXtkFileMode } from "../../XtkViewer/XtkViewer"; type AllProps = { @@ -17,7 +18,7 @@ const XtkDisplay: React.FC = ({ fileItem }: AllProps) => { async function renderFileData() { const fileData = await fileItem.blob?.arrayBuffer(); const fileName = fileItem.file?.data.fname; - let object; + let object: any = {}; if (mode === "volume") { r = new X.renderer2D(); @@ -73,7 +74,7 @@ const XtkDisplay: React.FC = ({ fileItem }: AllProps) => {
+ /> )}
); diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index 60bbb9117..e0d1be416 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -1,27 +1,27 @@ import { - RenderingEngine, - init, - Types, Enums, + RenderingEngine, + type Types, imageLoader, + init, metaData, volumeLoader, } from "@cornerstonejs/core"; -import registerWebImageLoader from "./webImageLoader"; -import { - init as csToolsInit, - Types as CornerstoneToolTypes, -} from "@cornerstonejs/tools"; -import dicomParser from "dicom-parser"; import * as cornerstone from "@cornerstonejs/core"; -import * as cornerstoneTools from "@cornerstonejs/tools"; +import cornerstonejsDICOMImageLoader from "@cornerstonejs/dicom-image-loader"; import { - cornerstoneStreamingImageVolumeLoader, cornerstoneStreamingDynamicImageVolumeLoader, + cornerstoneStreamingImageVolumeLoader, } from "@cornerstonejs/streaming-image-volume-loader"; +import { + type Types as CornerstoneToolTypes, + init as csToolsInit, +} from "@cornerstonejs/tools"; +import * as cornerstoneTools from "@cornerstonejs/tools"; +import dicomParser from "dicom-parser"; import hardcodedMetaDataProvider from "./hardcodedMetaDataProvider"; -import cornerstonejsDICOMImageLoader from "@cornerstonejs/dicom-image-loader"; import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider"; +import registerWebImageLoader from "./webImageLoader"; //@ts-ignore window.cornerstone = cornerstone; From e20dc684bcde59b28d12e1e692edab6664bc4346 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 12 Aug 2024 17:12:49 -0400 Subject: [PATCH 102/337] feat: Cleanup Feed Table Layout --- src/components/Common/common.css | 8 - src/components/Feeds/FeedListView.tsx | 220 +++++++++++++++----------- src/components/Feeds/Feeds.css | 4 +- src/components/Feeds/usePaginate.tsx | 2 +- 4 files changed, 130 insertions(+), 104 deletions(-) diff --git a/src/components/Common/common.css b/src/components/Common/common.css index 19a41ff90..9f56d4f54 100644 --- a/src/components/Common/common.css +++ b/src/components/Common/common.css @@ -6,11 +6,3 @@ width: 100%; } -.datatable-toolbar { - margin: 0 0.5rem 0.2rem 0; - .pf-v5-c-input-group .toolbar-label, - input { - font-size: 0.875rem; - font-weight: 500; - } -} diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 71d48f3d0..07c92829d 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -6,6 +6,7 @@ import { Checkbox, EmptyState, EmptyStateHeader, + Title, EmptyStateIcon, EmptyStateVariant, PageSection, @@ -18,7 +19,6 @@ import { } from "@patternfly/react-core"; import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; import { useQuery, useQueryClient } from "@tanstack/react-query"; -import { Typography } from "../Antd"; import { format } from "date-fns"; import type React from "react"; import { useContext, useEffect, useState } from "react"; @@ -27,7 +27,8 @@ import { useNavigate } from "react-router"; import { useTypedSelector } from "../../store/hooks"; import { setSidebarActive } from "../../store/ui/actions"; import { AddNodeProvider } from "../AddNode/context"; -import { DataTableToolbar, InfoIcon } from "../Common"; +import { Typography } from "../Antd"; +import { InfoIcon } from "../Common"; import CreateFeed from "../CreateFeed/CreateFeed"; import { CreateFeedProvider } from "../CreateFeed/context"; import { ThemeContext } from "../DarkTheme/useTheme"; @@ -50,7 +51,7 @@ const useSearchQuery = (query: URLSearchParams) => ({ page: query.get("page") || "1", search: query.get("search") || "", searchType: query.get("searchType") || "name", - perPage: query.get("perPage") || "14", + perPage: query.get("perPage") || "15", type: query.get("type") || "public", }); @@ -156,6 +157,9 @@ const TableSelectable: React.FC = () => { return ( { return ( - - Analyses (aka ChRIS feeds) are computational experiments where - data are organized and processed by ChRIS plugins. In this view - you may view your analyses and also the ones shared with you. - - } - /> - - - - - - - - - - - - + + Analyses (aka ChRIS feeds) are computational experiments where + data are organized and processed by ChRIS plugins. In this view + you may view your analyses and also the ones shared with you. + + } /> - - - +
+ {generatePagination(feedCount)} +
+ + + + + + + + + + + +
+ + { ) : ( )} - {generatePagination(feedCount)} ); @@ -472,32 +479,55 @@ const DonutUtilization = (props: { ); }; +const FeedInfoColumn = ({ + feed, + onClick, +}: { feed: Feed; onClick: (feed: Feed) => void }) => ( + +); + +const COLUMN_ORDER = [ + { id: "id", label: "ID" }, + { id: "analysis", label: "Analysis" }, + { id: "created", label: "Created" }, + { id: "creator", label: "Creator" }, + { id: "runtime", label: "Run Time" }, + { id: "size", label: "Size" }, + { id: "status", label: "Status" }, +]; + function EmptyStateTable() { return ( - - - - - - - + + ))} - @@ -505,27 +535,31 @@ function EmptyStateTable() { ); } -const LoadingTable = () => { +function LoadingTable() { return ( - +
IDAnalysisCreatedCreatorRun TimeSizeStatus + {COLUMN_ORDER.map(({ label }) => ( + {label}
- - - } - titleText="No results found" - headingLevel="h2" - /> - - + + + + + No Data Available + + + There are no analyses to display at this time. Please check back + later or adjust your filters. + +
+ + + + ))} + + + + {Array.from({ length: 15 }).map((_, index) => ( + + + {COLUMN_ORDER.map(({ id }) => ( + + ))} + + ))} + +
+ {COLUMN_ORDER.map(({ label }) => ( + {label}
+ + + +
); -}; - -const FeedInfoColumn = ({ - feed, - onClick, -}: { feed: Feed; onClick: (feed: Feed) => void }) => ( - -); +} diff --git a/src/components/Feeds/Feeds.css b/src/components/Feeds/Feeds.css index 1ce9128f3..a98b70b4d 100644 --- a/src/components/Feeds/Feeds.css +++ b/src/components/Feeds/Feeds.css @@ -26,8 +26,8 @@ .chart { text-align: right; - height: 50px; - width: 50px; + height: 40px; + width: 40px; display: block; } diff --git a/src/components/Feeds/usePaginate.tsx b/src/components/Feeds/usePaginate.tsx index ca5d2ea5e..ed9e0c548 100644 --- a/src/components/Feeds/usePaginate.tsx +++ b/src/components/Feeds/usePaginate.tsx @@ -12,7 +12,7 @@ export interface FilterState { export const usePaginate = () => { const [filterState, setFilterState] = useState({ - perPage: 14, + perPage: 15, page: 1, search: "", searchType: "name", From 5ff6db81ff68441f050ecfe5c433c686b218e9f5 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Tue, 13 Aug 2024 14:37:34 -0400 Subject: [PATCH 103/337] feat: Replace redux with redux toolkit --- package-lock.json | 73 ++++++-- package.json | 4 +- src/App.tsx | 6 +- src/components/AddNode/AddNode.tsx | 8 +- src/components/AddNode/GuidedConfig.tsx | 2 +- src/components/AddNode/SimpleDropdown.tsx | 63 +++---- src/components/AddPipeline/AddPipeline.tsx | 6 +- src/components/ComputePage/index.tsx | 2 +- src/components/Dashboard/index.tsx | 2 +- src/components/DeleteNode/index.tsx | 10 +- src/components/FeedDetails/index.tsx | 4 +- .../FeedOutputBrowser/FileBrowser.tsx | 4 +- .../FeedOutputBrowser/useFeedBrowser.tsx | 2 +- src/components/FeedTree/DropdownMenu.tsx | 6 +- src/components/FeedTree/FeedGraph.tsx | 12 +- src/components/FeedTree/FeedTree.tsx | 2 +- src/components/FeedTree/Node.tsx | 4 +- src/components/FeedTree/ParentComponent.tsx | 2 +- src/components/Feeds/FeedListView.tsx | 4 +- src/components/Feeds/FeedView.tsx | 11 +- src/components/Feeds/utilties.ts | 31 +-- src/components/Login/index.tsx | 2 +- src/components/NewLibrary/components/Cart.tsx | 6 +- .../NewLibrary/components/Operations.tsx | 6 +- src/components/NewLibrary/utils/longpress.tsx | 14 +- .../NewLibrary/utils/useDeletePayload.tsx | 6 +- .../NewLibrary/utils/useOperations.tsx | 2 +- .../NiivueDatasetViewer.tsx | 23 +-- src/components/NodeDetails/PluginTitle.tsx | 2 +- src/components/Pacs/index.tsx | 2 +- src/components/PipelinesPage/index.tsx | 2 +- src/components/PluginCatalog/index.tsx | 2 +- src/components/Signup/SignUpForm.tsx | 59 +++--- src/components/Store/index.tsx | 4 +- src/components/Wrapper/CartNotify.tsx | 2 +- src/components/Wrapper/Header.tsx | 3 +- src/components/Wrapper/Sidebar.tsx | 47 ++--- src/components/Wrapper/Toolbar.tsx | 55 ++---- src/components/Wrapper/index.tsx | 57 ++---- src/store/cart/actions.ts | 93 --------- src/store/cart/cartSlice.ts | 177 ++++++++++++++++++ src/store/cart/downloadSaga.ts | 32 +++- src/store/cart/reducer.ts | 129 ------------- src/store/cart/types.ts | 32 +--- src/store/cart/uploadSaga.ts | 18 +- src/store/configureStore.ts | 66 ++++--- src/store/drawer/actions.ts | 25 --- src/store/drawer/drawerSlice.ts | 122 ++++++++++++ src/store/drawer/reducer.ts | 103 ---------- src/store/drawer/types.ts | 22 --- src/store/explorer/actions.ts | 9 - src/store/explorer/explorerSlice.ts | 26 +++ src/store/explorer/reducer.ts | 30 --- src/store/explorer/types.ts | 6 - src/store/feed/actions.ts | 48 ----- src/store/feed/feedSlice.ts | 73 ++++++++ src/store/feed/reducer.ts | 104 ---------- src/store/feed/types.ts | 20 +- src/store/plugin/actions.ts | 24 --- src/store/plugin/pluginSlice.ts | 80 ++++++++ src/store/plugin/reducer.ts | 55 ------ src/store/plugin/saga.ts | 8 +- src/store/plugin/types.ts | 29 --- src/store/pluginInstance/actions.ts | 31 --- .../pluginInstance/pluginInstanceSlice.ts | 90 +++++++++ src/store/pluginInstance/reducer.ts | 95 ---------- src/store/pluginInstance/saga.ts | 44 +---- src/store/pluginInstance/types.ts | 18 -- src/store/resources/actions.ts | 38 ---- src/store/resources/reducer.ts | 82 -------- src/store/resources/resourceSlice.ts | 127 +++++++++++++ src/store/resources/saga.ts | 34 ++-- src/store/resources/types.ts | 15 -- src/store/root/applicationState.ts | 14 +- src/store/root/constants.ts | 11 -- src/store/root/rootReducer.ts | 30 --- src/store/ui/actions.ts | 14 -- src/store/ui/reducer.ts | 47 ----- src/store/ui/types.ts | 25 --- src/store/ui/uiSlice.ts | 46 +++++ src/store/user/actions.ts | 14 -- src/store/user/reducer.ts | 51 ----- src/store/user/types.ts | 28 --- src/store/user/userSlice.ts | 72 +++++++ 84 files changed, 1181 insertions(+), 1628 deletions(-) delete mode 100644 src/store/cart/actions.ts create mode 100644 src/store/cart/cartSlice.ts delete mode 100644 src/store/cart/reducer.ts delete mode 100644 src/store/drawer/actions.ts create mode 100644 src/store/drawer/drawerSlice.ts delete mode 100644 src/store/drawer/reducer.ts delete mode 100644 src/store/drawer/types.ts delete mode 100644 src/store/explorer/actions.ts create mode 100644 src/store/explorer/explorerSlice.ts delete mode 100644 src/store/explorer/reducer.ts delete mode 100644 src/store/feed/actions.ts create mode 100644 src/store/feed/feedSlice.ts delete mode 100644 src/store/feed/reducer.ts delete mode 100644 src/store/plugin/actions.ts create mode 100644 src/store/plugin/pluginSlice.ts delete mode 100644 src/store/plugin/reducer.ts delete mode 100644 src/store/plugin/types.ts delete mode 100644 src/store/pluginInstance/actions.ts create mode 100644 src/store/pluginInstance/pluginInstanceSlice.ts delete mode 100644 src/store/pluginInstance/reducer.ts delete mode 100644 src/store/resources/actions.ts delete mode 100644 src/store/resources/reducer.ts create mode 100644 src/store/resources/resourceSlice.ts delete mode 100644 src/store/root/constants.ts delete mode 100644 src/store/root/rootReducer.ts delete mode 100644 src/store/ui/actions.ts delete mode 100644 src/store/ui/reducer.ts delete mode 100644 src/store/ui/types.ts create mode 100644 src/store/ui/uiSlice.ts delete mode 100644 src/store/user/actions.ts delete mode 100644 src/store/user/reducer.ts delete mode 100644 src/store/user/types.ts create mode 100644 src/store/user/userSlice.ts diff --git a/package-lock.json b/package-lock.json index 2adf0c3e3..442a5f930 100644 --- a/package-lock.json +++ b/package-lock.json @@ -20,6 +20,7 @@ "@patternfly/react-log-viewer": "^5.2.0", "@patternfly/react-table": "^5.3.4", "@react-hook/resize-observer": "^2.0.1", + "@reduxjs/toolkit": "^2.2.7", "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", "@types/d3-zoom": "^3.0.8", @@ -35,7 +36,6 @@ "fp-ts": "^2.16.8", "hammerjs": "^2.0.8", "immer": "^10.1.1", - "keymirror": "^0.1.1", "lodash": "^4.17.21", "marked": "^13.0.2", "micromark": "^4.0.0", @@ -61,13 +61,11 @@ "react-redux": "^9.1.0", "react-router": "^6.21.3", "react-router-dom": "^6.24.0", - "redux": "^5.0.1", "redux-saga": "^1.3.0", "rusha": "^0.8.14", "sanitize-html": "^2.11.0", "shlex": "^2.1.2", "sirv-cli": "^2.0.2", - "typesafe-actions": "^5.1.0", "typescript": "^5.5.3", "use-ackee": "^3.0.1", "use-immer": "^0.9.0", @@ -1952,6 +1950,30 @@ "integrity": "sha512-1dgmkh+3so0+LlBWRhGA33ua4MYr7tUOj+a9Si28vUi0IUFNbff1T3sgpeDJI/LaC75bBYnQ0A3wXjn0OrRNBA==", "license": "MIT" }, + "node_modules/@reduxjs/toolkit": { + "version": "2.2.7", + "resolved": "https://registry.npmjs.org/@reduxjs/toolkit/-/toolkit-2.2.7.tgz", + "integrity": "sha512-faI3cZbSdFb8yv9dhDTmGwclW0vk0z5o1cia+kf7gCbaCwHI5e+7tP57mJUv22pNcNbeA62GSrPpfrUfdXcQ6g==", + "license": "MIT", + "dependencies": { + "immer": "^10.0.3", + "redux": "^5.0.1", + "redux-thunk": "^3.1.0", + "reselect": "^5.1.0" + }, + "peerDependencies": { + "react": "^16.9.0 || ^17.0.0 || ^18", + "react-redux": "^7.2.1 || ^8.1.3 || ^9.0.0" + }, + "peerDependenciesMeta": { + "react": { + "optional": true + }, + "react-redux": { + "optional": true + } + } + }, "node_modules/@remix-run/router": { "version": "1.19.0", "resolved": "https://registry.npmjs.org/@remix-run/router/-/router-1.19.0.tgz", @@ -2927,6 +2949,7 @@ "version": "3.1.0", "resolved": "https://registry.npmjs.org/aggregate-error/-/aggregate-error-3.1.0.tgz", "integrity": "sha512-4I7Td01quW/RpocfNayFdFVk1qSuoh0E7JrbRJ16nH01HhKFQ88INq9Sd+nd72zqRySlr9BmDA8xlEJ6vJMrYA==", + "dev": true, "license": "MIT", "dependencies": { "clean-stack": "^2.0.0", @@ -3077,6 +3100,7 @@ "version": "1.0.0", "resolved": "https://registry.npmjs.org/archy/-/archy-1.0.0.tgz", "integrity": "sha512-Xg+9RwCg/0p32teKdGMPTPnVXKD0w3DfHnFTficozsAgsvq2XenPJq/MYpzzQ/v8zrOyJn6Ds39VA4JIDwFfqw==", + "dev": true, "license": "MIT" }, "node_modules/argparse": { @@ -3620,6 +3644,7 @@ "version": "2.2.0", "resolved": "https://registry.npmjs.org/clean-stack/-/clean-stack-2.2.0.tgz", "integrity": "sha512-4diC9HaTE+KRAMWhDhrGOECgWZxoevMc5TlkObMqNSsVU62PYzXZ/SMTjzyGAFF1YusgxGcSWTEXBhp0CPwQ1A==", + "dev": true, "license": "MIT", "engines": { "node": ">=6" @@ -5246,6 +5271,7 @@ "version": "4.2.11", "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.11.tgz", "integrity": "sha512-RbJ5/jmFcNNCcDV5o9eTnBLJ/HszWV0P73bc+Ff4nS/rJj+YaS6IGyiOL0VoBYX+l1Wrl3k63h/KrH+nhJ0XvQ==", + "dev": true, "license": "ISC" }, "node_modules/hammerjs": { @@ -5276,6 +5302,7 @@ "version": "4.0.0", "resolved": "https://registry.npmjs.org/has-flag/-/has-flag-4.0.0.tgz", "integrity": "sha512-EykJT/Q1KjTWctppgIAgfSO0tKVuZUjhgMr17kqTumMl6Afv3EISleU7qZUzoXDFTAHTDC4NOoG/ZxU3EvlMPQ==", + "dev": true, "license": "MIT", "engines": { "node": ">=8" @@ -5483,6 +5510,7 @@ "version": "0.1.4", "resolved": "https://registry.npmjs.org/imurmurhash/-/imurmurhash-0.1.4.tgz", "integrity": "sha512-JmXMZ6wuvDmLiHEml9ykzqO6lwFbof0GG4IkcGaENdCRDDmMVnny7s5HsIgHCbaq0w2MyPhDqkhTUgS2LU2PHA==", + "dev": true, "license": "MIT", "engines": { "node": ">=0.8.19" @@ -5492,6 +5520,7 @@ "version": "4.0.0", "resolved": "https://registry.npmjs.org/indent-string/-/indent-string-4.0.0.tgz", "integrity": "sha512-EdDDZu4A2OyIK7Lr/2zG+w5jmbuk1DVBnEwREQvBzspBJkCEbRa8GxU1lghYcaGJCnRWibjDXlq779X1/y5xwg==", + "dev": true, "license": "MIT", "engines": { "node": ">=8" @@ -5628,6 +5657,7 @@ "version": "1.0.0", "resolved": "https://registry.npmjs.org/is-typedarray/-/is-typedarray-1.0.0.tgz", "integrity": "sha512-cyA56iCMHAh5CdzjJIa4aohJyeO1YbwLi3Jc35MmRU6poroFjIGZzUzupGiRPOjgHg9TLu43xbpwXk523fMxKA==", + "dev": true, "license": "MIT" }, "node_modules/is-windows": { @@ -5658,6 +5688,7 @@ "version": "2.0.0", "resolved": "https://registry.npmjs.org/isexe/-/isexe-2.0.0.tgz", "integrity": "sha512-RHxMLp9lnKHGHRng9QFhRCMbYAcVpn69smSGcq3f36xjgVVWThj4qqLbTLlq7Ssj8B+fIQ1EuCEGI2lKsyQeIw==", + "dev": true, "license": "ISC" }, "node_modules/istanbul-lib-coverage": { @@ -5870,11 +5901,6 @@ "node": ">=12" } }, - "node_modules/keymirror": { - "version": "0.1.1", - "resolved": "https://registry.npmjs.org/keymirror/-/keymirror-0.1.1.tgz", - "integrity": "sha512-vIkZAFWoDijgQT/Nvl2AHCMmnegN2ehgTPYuyy2hWQkQSntI0S7ESYqdLkoSe1HyEBFHHkCgSIvVdSEiWwKvCg==" - }, "node_modules/kleur": { "version": "4.1.5", "resolved": "https://registry.npmjs.org/kleur/-/kleur-4.1.5.tgz", @@ -9757,6 +9783,7 @@ "version": "3.0.0", "resolved": "https://registry.npmjs.org/p-map/-/p-map-3.0.0.tgz", "integrity": "sha512-d3qXVTF/s+W+CdJ5A29wywV2n8CQQYahlgz2bFiA+4eVNJbHJodPZ+/gXwPGh0bOqA+j8S+6+ckmvLGPk1QpxQ==", + "dev": true, "license": "MIT", "dependencies": { "aggregate-error": "^3.0.0" @@ -11243,6 +11270,15 @@ "@redux-saga/core": "^1.3.0" } }, + "node_modules/redux-thunk": { + "version": "3.1.0", + "resolved": "https://registry.npmjs.org/redux-thunk/-/redux-thunk-3.1.0.tgz", + "integrity": "sha512-NW2r5T6ksUKXCabzhL9z+h206HQw/NJkcLm1GPImRQ8IzfXwRGqjVhKJGauHirT0DAuyy6hjdnMZaRoAcy0Klw==", + "license": "MIT", + "peerDependencies": { + "redux": "^5.0.0" + } + }, "node_modules/regenerator-runtime": { "version": "0.14.1", "resolved": "https://registry.npmjs.org/regenerator-runtime/-/regenerator-runtime-0.14.1.tgz", @@ -11288,6 +11324,12 @@ "dev": true, "license": "ISC" }, + "node_modules/reselect": { + "version": "5.1.1", + "resolved": "https://registry.npmjs.org/reselect/-/reselect-5.1.1.tgz", + "integrity": "sha512-K/BG6eIky/SBpzfHZv/dd+9JBFiS4SWV7FIujVyJRux6e45+73RaUHXLmIR1f7WOMaQ0U1km6qwklRQxpJJY0w==", + "license": "MIT" + }, "node_modules/resize-observer-polyfill": { "version": "1.5.1", "resolved": "https://registry.npmjs.org/resize-observer-polyfill/-/resize-observer-polyfill-1.5.1.tgz", @@ -11527,6 +11569,7 @@ "version": "7.6.3", "resolved": "https://registry.npmjs.org/semver/-/semver-7.6.3.tgz", "integrity": "sha512-oVekP1cKtI+CTDvHWYFUcMtsK/00wmAEfyqKfNdARm8u1wNVhSgaX7A8d4UuIlUI5e84iEwOhs7ZPYRmzU9U6A==", + "dev": true, "license": "ISC", "bin": { "semver": "bin/semver.js" @@ -11628,6 +11671,7 @@ "version": "3.0.7", "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.7.tgz", "integrity": "sha512-wnD2ZE+l+SPC/uoS0vXeE9L1+0wuaMqKlfz9AMUo38JsyLSBWSFcHR1Rri62LZc12vLr1gb3jl7iwQhgwpAbGQ==", + "dev": true, "license": "ISC" }, "node_modules/sirv": { @@ -11900,6 +11944,7 @@ "version": "7.2.0", "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-7.2.0.tgz", "integrity": "sha512-qpCAvRl9stuOHveKsn7HncJRvv501qIacKzQlO/+Lwxc9+0q2wLyv4Dfvt80/DPn2pqOBsJdDiogXGR9+OvwRw==", + "dev": true, "license": "MIT", "dependencies": { "has-flag": "^4.0.0" @@ -12067,15 +12112,6 @@ "dev": true, "license": "MIT" }, - "node_modules/typesafe-actions": { - "version": "5.1.0", - "resolved": "https://registry.npmjs.org/typesafe-actions/-/typesafe-actions-5.1.0.tgz", - "integrity": "sha512-bna6Yi1pRznoo6Bz1cE6btB/Yy8Xywytyfrzu/wc+NFW3ZF0I+2iCGImhBsoYYCOWuICtRO4yHcnDlzgo1AdNg==", - "license": "MIT", - "engines": { - "node": ">= 4" - } - }, "node_modules/typescript": { "version": "5.5.4", "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.5.4.tgz", @@ -12911,6 +12947,7 @@ "version": "2.0.2", "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz", "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==", + "dev": true, "license": "ISC", "dependencies": { "isexe": "^2.0.0" @@ -13041,6 +13078,7 @@ "version": "3.0.3", "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-3.0.3.tgz", "integrity": "sha512-AvHcyZ5JnSfq3ioSyjrBkH9yW4m7Ayk8/9My/DD9onKeu/94fwrMocemO2QAJFAlnnDN+ZDS+ZjAR5ua1/PV/Q==", + "dev": true, "license": "ISC", "dependencies": { "imurmurhash": "^0.1.4", @@ -13053,6 +13091,7 @@ "version": "3.1.5", "resolved": "https://registry.npmjs.org/typedarray-to-buffer/-/typedarray-to-buffer-3.1.5.tgz", "integrity": "sha512-zdu8XMNEDepKKR+XYOXAVPtWui0ly0NtohUscw+UmaHiAWT8hrV1rr//H6V+0DvJ3OQ19S979M0laLfX8rm82Q==", + "dev": true, "license": "MIT", "dependencies": { "is-typedarray": "^1.0.0" diff --git a/package.json b/package.json index e0921ff14..a6dc357d4 100644 --- a/package.json +++ b/package.json @@ -36,6 +36,7 @@ "@patternfly/react-log-viewer": "^5.2.0", "@patternfly/react-table": "^5.3.4", "@react-hook/resize-observer": "^2.0.1", + "@reduxjs/toolkit": "^2.2.7", "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", "@types/d3-zoom": "^3.0.8", @@ -51,7 +52,6 @@ "fp-ts": "^2.16.8", "hammerjs": "^2.0.8", "immer": "^10.1.1", - "keymirror": "^0.1.1", "lodash": "^4.17.21", "marked": "^13.0.2", "micromark": "^4.0.0", @@ -77,13 +77,11 @@ "react-redux": "^9.1.0", "react-router": "^6.21.3", "react-router-dom": "^6.24.0", - "redux": "^5.0.1", "redux-saga": "^1.3.0", "rusha": "^0.8.14", "sanitize-html": "^2.11.0", "shlex": "^2.1.2", "sirv-cli": "^2.0.2", - "typesafe-actions": "^5.1.0", "typescript": "^5.5.3", "use-ackee": "^3.0.1", "use-immer": "^0.9.0", diff --git a/src/App.tsx b/src/App.tsx index 2c7a63377..0f98b3133 100644 --- a/src/App.tsx +++ b/src/App.tsx @@ -5,18 +5,18 @@ import { useContext } from "react"; import { CookiesProvider } from "react-cookie"; import { Provider } from "react-redux"; import { BrowserRouter } from "react-router-dom"; -import type { Store } from "redux"; //@ts-ignore import useAckee from "use-ackee"; import "./app.css"; import { ThemeContext } from "./components/DarkTheme/useTheme"; import "./components/Feeds/Feeds.css"; +import type { EnhancedStore } from "@reduxjs/toolkit"; +import Cart from "./components/NewLibrary/components/Cart"; import Routes from "./routes"; import type { RootState } from "./store/root/applicationState"; -import Cart from "./components/NewLibrary/components/Cart"; interface AllProps { - store: Store; + store: EnhancedStore; } const queryClient = new QueryClient({ diff --git a/src/components/AddNode/AddNode.tsx b/src/components/AddNode/AddNode.tsx index 6db204540..6b21a4b9c 100644 --- a/src/components/AddNode/AddNode.tsx +++ b/src/components/AddNode/AddNode.tsx @@ -9,15 +9,15 @@ import type React from "react"; import { useCallback, useContext } from "react"; import { useDispatch, useSelector } from "react-redux"; import { catchError } from "../../api/common"; -import { getNodeOperations } from "../../store/plugin/actions"; -import { addNodeRequest } from "../../store/pluginInstance/actions"; +import { useTypedSelector } from "../../store/hooks"; +import { getNodeOperations } from "../../store/plugin/pluginSlice"; +import { addNodeRequest } from "../../store/pluginInstance/pluginInstanceSlice"; import type { ApplicationState } from "../../store/root/applicationState"; +import { Alert } from "../Antd"; import { getRequiredObject } from "../CreateFeed/createFeedHelper"; import BasicConfiguration from "./BasicConfiguration"; import GuidedConfig from "./GuidedConfig"; import "./add-node.css"; -import { useTypedSelector } from "../../store/hooks"; -import { Alert } from "../Antd"; import { AddNodeContext } from "./context"; import { Types } from "./types"; diff --git a/src/components/AddNode/GuidedConfig.tsx b/src/components/AddNode/GuidedConfig.tsx index 6dc2856f0..870a472ce 100644 --- a/src/components/AddNode/GuidedConfig.tsx +++ b/src/components/AddNode/GuidedConfig.tsx @@ -35,7 +35,7 @@ import { quote } from "shlex"; import { v4 } from "uuid"; import { catchError, fetchResource, needsQuoting } from "../../api/common"; import { useTypedSelector } from "../../store/hooks"; -import { getParams } from "../../store/plugin/actions"; +import { getParams } from "../../store/plugin/pluginSlice"; import { ClipboardCopyFixed, ErrorAlert } from "../Common"; import ComputeEnvironments from "./ComputeEnvironment"; import RequiredParam from "./RequiredParam"; diff --git a/src/components/AddNode/SimpleDropdown.tsx b/src/components/AddNode/SimpleDropdown.tsx index e0a730c4e..ca39d4b18 100644 --- a/src/components/AddNode/SimpleDropdown.tsx +++ b/src/components/AddNode/SimpleDropdown.tsx @@ -1,19 +1,20 @@ -import React, { useContext, useEffect } from "react"; +import type { PluginParameter } from "@fnndsc/chrisapi"; import { + Button, Dropdown, - MenuToggle, DropdownItem, DropdownList, + MenuToggle, TextInput, } from "@patternfly/react-core"; +import React, { useContext, useEffect } from "react"; import { CloseIcon } from "../Icons"; -import { SimpleDropdownProps, SimpleDropdownState } from "./types"; +import type { SimpleDropdownProps, SimpleDropdownState } from "./types"; import { unPackForKeyValue } from "./utils"; -import { PluginParameter } from "@fnndsc/chrisapi"; +import { v4 } from "uuid"; import { AddNodeContext } from "./context"; import { Types } from "./types"; -import { v4 } from "uuid"; function getInitialState() { return { @@ -68,7 +69,7 @@ const SimpleDropdown = ({ id, params }: SimpleDropdownProps) => { const placeholder = param.data.help; const type = param.data.type; - if (params && params["dropdown"].length > 0) { + if (params && params.dropdown.length > 0) { dispatch({ type: Types.SetComponentList, payload: { @@ -121,27 +122,25 @@ const SimpleDropdown = ({ id, params }: SimpleDropdownProps) => { const dropdownItems = () => { const useParam = findUsedParam(); - const parameters = - params && - params["dropdown"] - .filter( - (param) => - param.data.optional === true && !useParam.has(param.data.flag), - ) - .map((param) => { - return ( - handleClick(param)} - className="plugin-configuration__parameter" - value={param.data.flag} - name={param.data.help} - style={{ fontFamily: "monospace" }} - > - {param.data.flag} - - ); - }); + const parameters = params?.dropdown + .filter( + (param) => + param.data.optional === true && !useParam.has(param.data.flag), + ) + .map((param) => { + return ( + handleClick(param)} + className="plugin-configuration__parameter" + value={param.data.flag} + name={param.data.help} + style={{ fontFamily: "monospace" }} + > + {param.data.flag} + + ); + }); return parameters; }; @@ -156,12 +155,12 @@ const SimpleDropdown = ({ id, params }: SimpleDropdownProps) => { ref={toggleRef} id="toggle-id" onClick={onToggle} - isDisabled={params && params["dropdown"].length == 0} + isDisabled={params && params.dropdown.length === 0} >
{paramFlag ? `${paramFlag}` - : params && params["dropdown"].length == 0 + : params && params.dropdown.length === 0 ? "No Parameters" : "Choose a Parameter"}
@@ -182,13 +181,11 @@ const SimpleDropdown = ({ id, params }: SimpleDropdownProps) => { placeholder={placeholder} value={value} isDisabled={ - type === "boolean" || (params && params["dropdown"].length == 0) + type === "boolean" || (params && params.dropdown.length === 0) } /> -
- -
+
); diff --git a/src/components/AddPipeline/AddPipeline.tsx b/src/components/AddPipeline/AddPipeline.tsx index 5b808ad4e..e7187b7fc 100644 --- a/src/components/AddPipeline/AddPipeline.tsx +++ b/src/components/AddPipeline/AddPipeline.tsx @@ -6,12 +6,12 @@ import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../api/chrisapiclient"; import { fetchResource } from "../../api/common"; import { useTypedSelector } from "../../store/hooks"; -import { getNodeOperations } from "../../store/plugin/actions"; +import { getNodeOperations } from "../../store/plugin/pluginSlice"; import { getPluginInstancesSuccess, getSelectedPlugin, -} from "../../store/pluginInstance/actions"; -import { getPluginInstanceStatusRequest } from "../../store/resources/actions"; +} from "../../store/pluginInstance/pluginInstanceSlice"; +import { getPluginInstanceStatusRequest } from "../../store/resources/resourceSlice"; import { Alert, Form, Tag } from "../Antd"; import { SpinContainer } from "../Common"; import Pipelines from "../PipelinesCopy"; diff --git a/src/components/ComputePage/index.tsx b/src/components/ComputePage/index.tsx index a45b644c6..22e43b4c1 100644 --- a/src/components/ComputePage/index.tsx +++ b/src/components/ComputePage/index.tsx @@ -1,7 +1,7 @@ import { PageSection } from "@patternfly/react-core"; import React from "react"; import { useDispatch } from "react-redux"; -import { setSidebarActive } from "../../store/ui/actions"; +import { setSidebarActive } from "../../store/ui/uiSlice"; import { Typography } from "../Antd"; import { InfoIcon } from "../Common"; import WrapperConnect from "../Wrapper"; diff --git a/src/components/Dashboard/index.tsx b/src/components/Dashboard/index.tsx index 66bb31fad..0f4e1ab80 100644 --- a/src/components/Dashboard/index.tsx +++ b/src/components/Dashboard/index.tsx @@ -4,7 +4,7 @@ import { useDispatch } from "react-redux"; import WrapperConnect from "../Wrapper"; import { PageSection, Grid, GridItem } from "@patternfly/react-core"; import { Typography } from "../Antd"; -import { setSidebarActive } from "../../store/ui/actions"; +import { setSidebarActive } from "../../store/ui/uiSlice"; import { InfoIcon } from "../Common"; import { CatalogTile } from "@patternfly/react-catalog-view-extension"; import "./dashboard.css"; diff --git a/src/components/DeleteNode/index.tsx b/src/components/DeleteNode/index.tsx index 727980936..fb5bbcf86 100644 --- a/src/components/DeleteNode/index.tsx +++ b/src/components/DeleteNode/index.tsx @@ -1,17 +1,17 @@ import type { PluginInstance } from "@fnndsc/chrisapi"; import { Button, Modal, ModalVariant } from "@patternfly/react-core"; import { useMutation } from "@tanstack/react-query"; -import { Alert } from "../Antd"; -import { useEffect, Fragment } from "react"; +import { Fragment, useEffect } from "react"; import { useDispatch } from "react-redux"; import { fetchResource } from "../../api/common"; import { useTypedSelector } from "../../store/hooks"; -import { getNodeOperations } from "../../store/plugin/actions"; +import { getNodeOperations } from "../../store/plugin/pluginSlice"; import { getPluginInstancesSuccess, getSelectedPlugin, -} from "../../store/pluginInstance/actions"; -import { getPluginInstanceStatusRequest } from "../../store/resources/actions"; +} from "../../store/pluginInstance/pluginInstanceSlice"; +import { getPluginInstanceStatusRequest } from "../../store/resources/resourceSlice"; +import { Alert } from "../Antd"; import { SpinContainer } from "../Common"; const DeleteNode = () => { diff --git a/src/components/FeedDetails/index.tsx b/src/components/FeedDetails/index.tsx index 4482e7848..5a61f5fb0 100644 --- a/src/components/FeedDetails/index.tsx +++ b/src/components/FeedDetails/index.tsx @@ -3,8 +3,8 @@ import { Badge } from "../Antd"; import React, { type ReactNode, useState } from "react"; import { useDispatch } from "react-redux"; import { fetchNote } from "../../api/common"; -import { setDrawerCurrentlyActive } from "../../store/drawer/actions"; -import type { IDrawerState } from "../../store/drawer/types"; +import { setDrawerCurrentlyActive } from "../../store/drawer/drawerSlice"; +import type { IDrawerState } from "../../store/drawer/drawerSlice"; import { useTypedSelector } from "../../store/hooks"; import { ButtonWithTooltip } from "../Feeds/DrawerUtils"; import { handleToggle } from "../Feeds/utilties"; diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index d10f292fe..285008b16 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -14,11 +14,11 @@ import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; import { useContext, useEffect } from "react"; import { useDispatch } from "react-redux"; import { getFileExtension } from "../../api/model"; -import { setFilePreviewPanel } from "../../store/drawer/actions"; +import { setFilePreviewPanel } from "../../store/drawer/drawerSlice"; import { clearSelectedFile, setSelectedFile, -} from "../../store/explorer/actions"; +} from "../../store/explorer/explorerSlice"; import useDownload, { useTypedSelector } from "../../store/hooks"; import { notification } from "../Antd"; import { ClipboardCopyContainer, SpinContainer, getIcon } from "../Common"; diff --git a/src/components/FeedOutputBrowser/useFeedBrowser.tsx b/src/components/FeedOutputBrowser/useFeedBrowser.tsx index 5a2a02c51..4b3158873 100644 --- a/src/components/FeedOutputBrowser/useFeedBrowser.tsx +++ b/src/components/FeedOutputBrowser/useFeedBrowser.tsx @@ -1,6 +1,6 @@ import React from "react"; import { useDispatch } from "react-redux"; -import { getPluginFilesRequest } from "../../store/resources/actions"; +import { getPluginFilesRequest } from "../../store/resources/resourceSlice"; import { useTypedSelector } from "../../store/hooks"; const status = ["finishedSuccessfully", "finishedWithError", "cancelled"]; diff --git a/src/components/FeedTree/DropdownMenu.tsx b/src/components/FeedTree/DropdownMenu.tsx index e1d51951c..733eaac2f 100644 --- a/src/components/FeedTree/DropdownMenu.tsx +++ b/src/components/FeedTree/DropdownMenu.tsx @@ -1,9 +1,9 @@ -import { Dropdown, type MenuProps } from "../Antd"; +import type React from "react"; import { useDispatch } from "react-redux"; import { useTypedSelector } from "../../store/hooks"; -import { getNodeOperations } from "../../store/plugin/actions"; +import { getNodeOperations } from "../../store/plugin/pluginSlice"; +import { Dropdown, type MenuProps } from "../Antd"; import { AddIcon, DeleteIcon, PatternflyArchiveIcon } from "../Icons"; -import type React from "react"; const DropdownMenu = ({ children, diff --git a/src/components/FeedTree/FeedGraph.tsx b/src/components/FeedTree/FeedGraph.tsx index 0ed0c5919..18efee88d 100644 --- a/src/components/FeedTree/FeedGraph.tsx +++ b/src/components/FeedTree/FeedGraph.tsx @@ -1,18 +1,18 @@ -import { PluginInstance } from "@fnndsc/chrisapi"; +import type { PluginInstance } from "@fnndsc/chrisapi"; import { Switch, Text } from "@patternfly/react-core"; import React from "react"; import { ErrorBoundary } from "react-error-boundary"; import ForceGraph2D, { - ForceGraphMethods, - NodeObject, + type ForceGraphMethods, + type NodeObject, } from "react-force-graph-2d"; import { connect, useDispatch } from "react-redux"; import { TreeModel } from "../../api/model"; -import { setFeedLayout } from "../../store/feed/actions"; +import { setFeedLayout } from "../../store/feed/feedSlice"; import { useTypedSelector } from "../../store/hooks"; import type { PluginInstancePayload } from "../../store/pluginInstance/types"; -import { ApplicationState } from "../../store/root/applicationState"; -import { FeedTreeScaleType, NodeScaleDropdown } from "./Controls"; +import type { ApplicationState } from "../../store/root/applicationState"; +import { type FeedTreeScaleType, NodeScaleDropdown } from "./Controls"; import "./FeedTree.css"; import useSize from "./useSize"; diff --git a/src/components/FeedTree/FeedTree.tsx b/src/components/FeedTree/FeedTree.tsx index 04ca3f21b..2dfeebadf 100644 --- a/src/components/FeedTree/FeedTree.tsx +++ b/src/components/FeedTree/FeedTree.tsx @@ -14,7 +14,7 @@ import { setFeedLayout, setSearchFilter, setTranslate, -} from "../../store/feed/actions"; +} from "../../store/feed/feedSlice"; import type { FeedTreeProp } from "../../store/feed/types"; import { useTypedSelector } from "../../store/hooks"; import { ThemeContext } from "../DarkTheme/useTheme"; diff --git a/src/components/FeedTree/Node.tsx b/src/components/FeedTree/Node.tsx index be2d25eae..12ae95372 100644 --- a/src/components/FeedTree/Node.tsx +++ b/src/components/FeedTree/Node.tsx @@ -11,8 +11,8 @@ import { getPluginInstancesSuccess, getSelectedD3Node, getSelectedPlugin, -} from "../../store/pluginInstance/actions"; -import { getPluginInstanceStatusRequest } from "../../store/resources/actions"; +} from "../../store/pluginInstance/pluginInstanceSlice"; +import { getPluginInstanceStatusRequest } from "../../store/resources/resourceSlice"; import AddNodeConnect from "../AddNode/AddNode"; import { AddNodeProvider } from "../AddNode/context"; import AddPipeline from "../AddPipeline/AddPipeline"; diff --git a/src/components/FeedTree/ParentComponent.tsx b/src/components/FeedTree/ParentComponent.tsx index cfd670e50..ccd934bd6 100644 --- a/src/components/FeedTree/ParentComponent.tsx +++ b/src/components/FeedTree/ParentComponent.tsx @@ -1,6 +1,6 @@ import React from "react"; import { useDispatch } from "react-redux"; -import { setFeedTreeProp } from "../../store/feed/actions"; +import { setFeedTreeProp } from "../../store/feed/feedSlice"; import { useTypedSelector } from "../../store/hooks"; import { Alert } from "../Antd"; import { SpinContainer } from "../Common"; diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 07c92829d..2609b4d6e 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -1,11 +1,9 @@ import type { Feed, FileBrowserFolder } from "@fnndsc/chrisapi"; import { ChartDonutUtilization } from "@patternfly/react-charts"; import { - Bullseye, Button, Checkbox, EmptyState, - EmptyStateHeader, Title, EmptyStateIcon, EmptyStateVariant, @@ -25,7 +23,7 @@ import { useContext, useEffect, useState } from "react"; import { useDispatch } from "react-redux"; import { useNavigate } from "react-router"; import { useTypedSelector } from "../../store/hooks"; -import { setSidebarActive } from "../../store/ui/actions"; +import { setSidebarActive } from "../../store/ui/uiSlice"; import { AddNodeProvider } from "../AddNode/context"; import { Typography } from "../Antd"; import { InfoIcon } from "../Common"; diff --git a/src/components/Feeds/FeedView.tsx b/src/components/Feeds/FeedView.tsx index 2967c6edd..12f2e6763 100644 --- a/src/components/Feeds/FeedView.tsx +++ b/src/components/Feeds/FeedView.tsx @@ -9,22 +9,22 @@ import { useQuery } from "@tanstack/react-query"; import React from "react"; import { useDispatch } from "react-redux"; import { useLocation, useNavigate, useParams } from "react-router"; -import { clearSelectedFile } from "../../store/explorer/actions"; +import { clearSelectedFile } from "../../store/explorer/explorerSlice"; import { getFeedSuccess, resetFeed, setShowToolbar, -} from "../../store/feed/actions"; +} from "../../store/feed/feedSlice"; import { useTypedSelector } from "../../store/hooks"; import { getPluginInstancesRequest, getSelectedD3Node, getSelectedPlugin, resetPluginInstances, -} from "../../store/pluginInstance/actions"; -import { resetActiveResources } from "../../store/resources/actions"; +} from "../../store/pluginInstance/pluginInstanceSlice"; +import { resetActiveResources } from "../../store/resources/resourceSlice"; import type { DestroyActiveResources } from "../../store/resources/types"; -import { setIsNavOpen, setSidebarActive } from "../../store/ui/actions"; +import { setSidebarActive } from "../../store/ui/uiSlice"; import { notification } from "../Antd"; import FeedOutputBrowser from "../FeedOutputBrowser/FeedOutputBrowser"; import FeedGraph from "../FeedTree/FeedGraph"; @@ -129,7 +129,6 @@ export default function FeedView() { }, [dispatch]); React.useEffect(() => { - dispatch(setIsNavOpen(false)); dispatch(setShowToolbar(true)); }, [dispatch]); diff --git a/src/components/Feeds/utilties.ts b/src/components/Feeds/utilties.ts index 0ab8672ac..4ab07db01 100644 --- a/src/components/Feeds/utilties.ts +++ b/src/components/Feeds/utilties.ts @@ -1,6 +1,9 @@ -import type { DrawerPayloadType, IDrawerState } from "../../store/drawer/types"; -import { setDrawerState } from "../../store/drawer/actions"; -import type { Dispatch } from "redux"; +import type { + DrawerPayloadType, + IDrawerState, +} from "../../store/drawer/drawerSlice"; +import { setDrawerState } from "../../store/drawer/drawerSlice"; + import ChrisAPIClient from "../../api/chrisapiclient"; import type { Feed, @@ -11,15 +14,15 @@ import type { import { fetchResource } from "../../api/common"; export const handleDrawerActions = ( - actionType: string, + actionType: keyof IDrawerState, open: boolean, maximized: boolean, minimized: boolean, - dispatch: Dispatch, + dispatch: any, action: (action: DrawerPayloadType) => { type: any; payload: { - actionType: string; + actionType: keyof IDrawerState; open: boolean; maximized: boolean; minimized: boolean; @@ -36,22 +39,28 @@ export const handleDrawerActions = ( ); }; -export const handleMaximize = (actionType: string, dispatch: Dispatch) => { +export const handleMaximize = ( + actionType: keyof IDrawerState, + dispatch: any, +) => { handleDrawerActions(actionType, true, true, false, dispatch, setDrawerState); }; -export const handleMinimize = (actionType: string, dispatch: Dispatch) => { +export const handleMinimize = ( + actionType: keyof IDrawerState, + dispatch: any, +) => { handleDrawerActions(actionType, true, false, true, dispatch, setDrawerState); }; -export const handleOpen = (actionType: string, dispatch: Dispatch) => { +export const handleOpen = (actionType: keyof IDrawerState, dispatch: any) => { handleDrawerActions(actionType, true, false, false, dispatch, setDrawerState); }; export const handleToggle = ( - actionType: string, + actionType: keyof IDrawerState, drawerState: IDrawerState, - dispatch: Dispatch, + dispatch: any, ) => { handleDrawerActions( actionType, diff --git a/src/components/Login/index.tsx b/src/components/Login/index.tsx index 2d23d0f0e..73b3ac094 100644 --- a/src/components/Login/index.tsx +++ b/src/components/Login/index.tsx @@ -18,7 +18,7 @@ import { Link, useLocation, useNavigate } from "react-router-dom"; import ChrisAPIClient from "../../api/chrisapiclient"; import ChRIS_Logo_Inline from "../../assets/chris-logo-inline.png"; import ChRIS_Logo from "../../assets/chris-logo.png"; -import { setAuthTokenSuccess } from "../../store/user/actions"; +import { setAuthTokenSuccess } from "../../store/user/userSlice"; import "./Login.css"; export const SimpleLoginPage: React.FunctionComponent = () => { diff --git a/src/components/NewLibrary/components/Cart.tsx b/src/components/NewLibrary/components/Cart.tsx index ffc6b9553..cdabd0996 100644 --- a/src/components/NewLibrary/components/Cart.tsx +++ b/src/components/NewLibrary/components/Cart.tsx @@ -9,7 +9,7 @@ import { clearDownloadStatus, clearUploadState, setToggleCart, -} from "../../../store/cart/actions"; +} from "../../../store/cart/cartSlice"; import { DownloadTypes } from "../../../store/cart/types"; import { useTypedSelector } from "../../../store/hooks"; import { DotsIndicator, EmptyStateComponent } from "../../Common"; @@ -81,7 +81,9 @@ const Cart = () => { avatar={} title={ } diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 43f5bfad1..e0bd15c36 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -24,7 +24,7 @@ import React, { } from "react"; import { useDispatch } from "react-redux"; import { getFileName } from "../../../api/common"; -import { removeIndividualSelection } from "../../../store/cart/actions"; +import { removeSelectedPayload } from "../../../store/cart/cartSlice"; import { useTypedSelector } from "../../../store/hooks"; import { AddIcon, @@ -259,9 +259,7 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { {selectedPaths.map((selection) => ( - dispatch(removeIndividualSelection(selection)) - } + onClick={() => dispatch(removeSelectedPayload(selection))} > {getFileName(selection.path)} diff --git a/src/components/NewLibrary/utils/longpress.tsx b/src/components/NewLibrary/utils/longpress.tsx index 0fdeafba9..1b1fbc6cb 100644 --- a/src/components/NewLibrary/utils/longpress.tsx +++ b/src/components/NewLibrary/utils/longpress.tsx @@ -7,10 +7,10 @@ import { useRef, useState } from "react"; import { useDispatch } from "react-redux"; import { useNavigate } from "react-router"; import { - clearSelectFolder, - setSelectFolder, + clearSelectedPaths, + setSelectedPaths, setToggleCart, -} from "../../../store/cart/actions"; +} from "../../../store/cart/cartSlice"; import { useTypedSelector } from "../../../store/hooks"; import { FolderIcon } from "../../Icons"; @@ -43,11 +43,11 @@ export default function useLongPress() { } function selectFolder(pathForCart: string, type: string, payload: any) { - dispatch(setSelectFolder({ path: pathForCart, type, payload })); + dispatch(setSelectedPaths({ path: pathForCart, type, payload })); } function deselectFolder(pathForCart: string) { - dispatch(clearSelectFolder(pathForCart)); + dispatch(clearSelectedPaths(pathForCart)); } function handleOnClick( @@ -82,14 +82,14 @@ export default function useLongPress() { e.stopPropagation(); if (e.currentTarget.checked) { dispatch( - setSelectFolder({ + setSelectedPaths({ path, type, payload, }), ); } else { - dispatch(clearSelectFolder(path)); + dispatch(clearSelectedPaths(path)); } }; diff --git a/src/components/NewLibrary/utils/useDeletePayload.tsx b/src/components/NewLibrary/utils/useDeletePayload.tsx index ad1aac809..a20a8c04c 100644 --- a/src/components/NewLibrary/utils/useDeletePayload.tsx +++ b/src/components/NewLibrary/utils/useDeletePayload.tsx @@ -1,9 +1,9 @@ -import { useMutation, useQueryClient } from "@tanstack/react-query"; +import { useMutation } from "@tanstack/react-query"; import axios from "axios"; import { useState } from "react"; import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../../api/chrisapiclient"; -import { clearSelectFolder } from "../../../store/cart/actions"; +import { clearSelectedPaths } from "../../../store/cart/cartSlice"; import type { SelectionPayload } from "../../../store/cart/types"; import { ErrorAlert } from "../../Common"; @@ -40,7 +40,7 @@ const useDeletePayload = (inValidateFolders: () => void, api: any) => { ); inValidateFolders(); - successfulPaths.forEach((path) => dispatch(clearSelectFolder(path))); + successfulPaths.forEach((path) => dispatch(clearSelectedPaths(path))); return errors.length > 0 ? errors : null; }; diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index 17823d4f8..a1cd3d01d 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -11,7 +11,7 @@ import { startAnonymize, startDownload, startUpload, -} from "../../../store/cart/actions"; +} from "../../../store/cart/cartSlice"; import { useTypedSelector } from "../../../store/hooks"; import useDeletePayload from "../utils/useDeletePayload"; import useFeedOperations from "./useFeedOperations"; diff --git a/src/components/NiivueDatasetViewer/NiivueDatasetViewer.tsx b/src/components/NiivueDatasetViewer/NiivueDatasetViewer.tsx index 0ef4e935b..78c70ae32 100644 --- a/src/components/NiivueDatasetViewer/NiivueDatasetViewer.tsx +++ b/src/components/NiivueDatasetViewer/NiivueDatasetViewer.tsx @@ -4,17 +4,18 @@ import { useDispatch } from "react-redux"; import { PageSection } from "@patternfly/react-core"; import WrapperConnect from "../Wrapper"; import ChrisAPIClient from "../../api/chrisapiclient"; -import { setIsNavOpen, setSidebarActive } from "../../store/ui/actions"; - -import { ChNVROptions, ChNVRVolume } from "./models"; +import { setIsNavOpen, setSidebarActive } from "../../store/ui/uiSlice"; +import type { ChNVROptions, ChNVRVolume } from "./models"; import { DEFAULT_OPTIONS } from "./defaults"; import HeaderOptionBar from "./components/HeaderOptionBar"; -import SizedNiivueCanvas, { CrosshairLocation } from "../SizedNiivueCanvas"; -import { Problem, TagsDictionary, VisualDataset } from "./types"; +import SizedNiivueCanvas, { + type CrosshairLocation, +} from "../SizedNiivueCanvas"; +import type { Problem, TagsDictionary, VisualDataset } from "./types"; import { - DatasetFile, - DatasetFilesClient, - DatasetPreClient, + type DatasetFile, + type DatasetFilesClient, + type DatasetPreClient, getDataset, getPreClient, } from "./client"; @@ -31,10 +32,10 @@ import { } from "./content"; import { parsePluginInstanceId } from "./client/helpers"; import { getFeedOf } from "./client/getDataset"; -import { Feed } from "@fnndsc/chrisapi"; +import type { Feed } from "@fnndsc/chrisapi"; import { - DatasetFileState, - DatasetVolume, + type DatasetFileState, + type DatasetVolume, files2states, volumeIsLoaded, } from "./statefulTypes"; diff --git a/src/components/NodeDetails/PluginTitle.tsx b/src/components/NodeDetails/PluginTitle.tsx index b531393f5..c48d9d653 100644 --- a/src/components/NodeDetails/PluginTitle.tsx +++ b/src/components/NodeDetails/PluginTitle.tsx @@ -11,7 +11,7 @@ import { Alert } from "../Antd"; import { useEffect, useState } from "react"; import { useDispatch } from "react-redux"; import { useTypedSelector } from "../../store/hooks"; -import { setPluginTitle } from "../../store/pluginInstance/actions"; +import { setPluginTitle } from "../../store/pluginInstance/pluginInstanceSlice"; import { SpinContainer } from "../Common"; const PluginTitle = () => { diff --git a/src/components/Pacs/index.tsx b/src/components/Pacs/index.tsx index 63f16cb2d..e39fcd262 100644 --- a/src/components/Pacs/index.tsx +++ b/src/components/Pacs/index.tsx @@ -18,7 +18,7 @@ import { useDispatch } from "react-redux"; import { useNavigate } from "react-router"; import { useSearchParams } from "react-router-dom"; import { pluralize } from "../../api/common"; -import { setSidebarActive } from "../../store/ui/actions"; +import { setSidebarActive } from "../../store/ui/uiSlice"; import { EmptyStateComponent, SpinContainer } from "../Common"; import WrapperConnect from "../Wrapper"; import PatientCard from "./components/PatientCard"; diff --git a/src/components/PipelinesPage/index.tsx b/src/components/PipelinesPage/index.tsx index de84078bb..35d1ea48c 100644 --- a/src/components/PipelinesPage/index.tsx +++ b/src/components/PipelinesPage/index.tsx @@ -3,7 +3,7 @@ import { useDispatch } from "react-redux"; import { PipelineProvider } from "../PipelinesCopy/context"; import Pipelines from "../PipelinesCopy"; import WrapperConnect from "../Wrapper"; -import { setSidebarActive } from "../../store/ui/actions"; +import { setSidebarActive } from "../../store/ui/uiSlice"; import { PageSection } from "@patternfly/react-core"; const PipelinePage = () => { diff --git a/src/components/PluginCatalog/index.tsx b/src/components/PluginCatalog/index.tsx index ad618d7fb..1a0a8ee0f 100644 --- a/src/components/PluginCatalog/index.tsx +++ b/src/components/PluginCatalog/index.tsx @@ -4,7 +4,7 @@ import { Typography } from "../Antd"; import WrapperConnect from "../Wrapper"; import PluginCatalog from "./PluginCatalog"; import { InfoIcon } from "../Common/"; -import { setSidebarActive } from "../../store/ui/actions"; +import { setSidebarActive } from "../../store/ui/uiSlice"; import { PageSection } from "@patternfly/react-core"; import "./plugin-catalog.css"; diff --git a/src/components/Signup/SignUpForm.tsx b/src/components/Signup/SignUpForm.tsx index 30401c0b8..532dd427f 100644 --- a/src/components/Signup/SignUpForm.tsx +++ b/src/components/Signup/SignUpForm.tsx @@ -1,49 +1,42 @@ -import React from "react"; -import { connect } from "react-redux"; -import { Dispatch } from "redux"; -import { useNavigate } from "react-router-dom"; +import ChrisApiClient, { type User } from "@fnndsc/chrisapi"; import { - Form, - FormGroup, - TextInput, - Button, ActionGroup, - FormAlert, Alert, - InputGroup, + Button, + Form, + FormAlert, + FormGroup, HelperText, HelperTextItem, + InputGroup, + TextInput, } from "@patternfly/react-core"; -import ChrisApiClient, { User } from "@fnndsc/chrisapi"; -import { Link } from "react-router-dom"; -import { has } from "lodash"; +import { EyeIcon, EyeSlashIcon } from "@patternfly/react-icons"; import { validate } from "email-validator"; -import { setAuthTokenSuccess } from "../../store/user/actions"; -import { EyeSlashIcon, EyeIcon } from "@patternfly/react-icons"; +import { has } from "lodash"; +import React from "react"; import { useCookies } from "react-cookie"; +import { useDispatch } from "react-redux"; +import { useNavigate } from "react-router-dom"; +import { Link } from "react-router-dom"; +import { setAuthTokenSuccess } from "../../store/user/userSlice"; type Validated = { error: undefined | "error" | "default" | "success" | "warning"; }; interface SignUpFormProps { - setAuthTokenSuccess: (auth: { - token: string; - username: string; - isStaff: boolean; - }) => void; isShowPasswordEnabled?: boolean; showPasswordAriaLabel?: string; hidePasswordAriaLabel?: string; } const SignUpForm: React.FC = ({ - setAuthTokenSuccess, isShowPasswordEnabled = true, hidePasswordAriaLabel = "Hide password", showPasswordAriaLabel = "Show password", }: SignUpFormProps) => { - /* eslint-disable */ + const dispatch = useDispatch(); const [_cookies, setCookie] = useCookies([""]); const [userState, setUserState] = React.useState<{ username: string; @@ -140,11 +133,13 @@ const SignUpForm: React.FC = ({ path: "/", maxAge: oneDayToSeconds, }); - setAuthTokenSuccess({ - token, - username: user.data.username, - isStaff: user.data.is_staff, - }); + dispatch( + setAuthTokenSuccess({ + token, + username: user.data.username, + isStaff: user.data.is_staff, + }), + ); const then = new URLSearchParams(location.search).get("then"); if (then) navigate(then); else navigate("/"); @@ -310,12 +305,4 @@ const SignUpForm: React.FC = ({ ); }; -const mapDispatchToProps = (dispatch: Dispatch) => ({ - setAuthTokenSuccess: (auth: { - token: string; - username: string; - isStaff: boolean; - }) => dispatch(setAuthTokenSuccess(auth)), -}); - -export default connect(null, mapDispatchToProps)(SignUpForm); +export default SignUpForm; diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index 64e4c812a..305a35a19 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -1,4 +1,4 @@ -import Client, { type Plugin, type PluginMeta } from "@fnndsc/chrisapi"; +import Client, { type Plugin } from "@fnndsc/chrisapi"; import { ActionGroup, Badge, @@ -35,7 +35,7 @@ import { Cookies, useCookies } from "react-cookie"; import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useTypedSelector } from "../../store/hooks"; -import { setSidebarActive } from "../../store/ui/actions"; +import { setSidebarActive } from "../../store/ui/uiSlice"; import { InfoIcon, SpinContainer } from "../Common"; import { CheckCircleIcon, SearchIcon } from "../Icons"; import "../SinglePlugin/singlePlugin.css"; diff --git a/src/components/Wrapper/CartNotify.tsx b/src/components/Wrapper/CartNotify.tsx index ae4081623..f174a7aa6 100644 --- a/src/components/Wrapper/CartNotify.tsx +++ b/src/components/Wrapper/CartNotify.tsx @@ -3,7 +3,7 @@ import { Badge } from "../Antd"; import { isEmpty } from "lodash"; import { useEffect, useState } from "react"; import { useDispatch } from "react-redux"; -import { setToggleCart } from "../../store/cart/actions"; +import { setToggleCart } from "../../store/cart/cartSlice"; import { useTypedSelector } from "../../store/hooks"; import { BrainIcon } from "../Icons"; diff --git a/src/components/Wrapper/Header.tsx b/src/components/Wrapper/Header.tsx index b773d260e..ffc47c0f9 100644 --- a/src/components/Wrapper/Header.tsx +++ b/src/components/Wrapper/Header.tsx @@ -8,11 +8,10 @@ import { PageToggleButton, Brand, } from "@patternfly/react-core"; - import brandImg from "../../assets/logo_chris_dashboard.png"; import BarsIcon from "@patternfly/react-icons/dist/esm/icons/bars-icon"; import ToolbarComponent from "./Toolbar"; -import type { IUserState } from "../../store/user/types"; +import type { IUserState } from "../../store/user/userSlice"; import { useTypedSelector } from "../../store/hooks"; const brand = ( diff --git a/src/components/Wrapper/Sidebar.tsx b/src/components/Wrapper/Sidebar.tsx index 73bb4a182..de9bde0a8 100644 --- a/src/components/Wrapper/Sidebar.tsx +++ b/src/components/Wrapper/Sidebar.tsx @@ -8,32 +8,26 @@ import { } from "@patternfly/react-core"; import { isEmpty } from "lodash"; import type * as React from "react"; -import { connect } from "react-redux"; import { Link } from "react-router-dom"; -import type { Dispatch } from "redux"; import { useTypedSelector } from "../../store/hooks"; -import type { ApplicationState } from "../../store/root/applicationState"; -import { setSidebarActive } from "../../store/ui/actions"; -import type { IUiState } from "../../store/ui/types"; -import type { IUserState } from "../../store/user/types"; +import type { IUiState } from "../../store/ui/uiSlice"; +import { setSidebarActive } from "../../store/ui/uiSlice"; +import type { IUserState } from "../../store/user/userSlice"; +import { useDispatch } from "react-redux"; -type ReduxProp = { - setSidebarActive: (active: { activeItem: string }) => void; -}; - -type AllProps = IUiState & IUserState & ReduxProp; +type AllProps = IUiState & IUserState; -const Sidebar: React.FC = ({ - isNavOpen, - sidebarActiveItem, - setSidebarActive, -}) => { +const Sidebar: React.FC = () => { + const { sidebarActiveItem, isNavOpen } = useTypedSelector( + (state) => state.ui, + ); const isLoggedIn = useTypedSelector((state) => state.user.isLoggedIn); + const dispatch = useDispatch(); const onSelect = (selectedItem: any) => { const { itemId } = selectedItem; if (sidebarActiveItem !== itemId) { - setSidebarActive({ activeItem: itemId }); + dispatch(setSidebarActive({ activeItem: itemId })); } }; @@ -146,21 +140,6 @@ const AnonSidebarImpl: React.FC = ({ ); }; -const mapStateToProps = ({ user, ui }: ApplicationState) => ({ - isLoggedIn: user.isLoggedIn, - sidebarActiveItem: ui.sidebarActiveItem, -}); - -const mapDispatchToProps = (dispatch: Dispatch) => ({ - setSidebarActive: (active: { activeItem: string }) => - dispatch(setSidebarActive(active)), -}); - -const AnonSidebar = connect( - mapStateToProps, - mapDispatchToProps, -)(AnonSidebarImpl); -export { AnonSidebar }; +export { AnonSidebarImpl as AnonSidebar }; -const SidebarConnect = connect(mapStateToProps, mapDispatchToProps)(Sidebar); -export default SidebarConnect; +export default Sidebar; diff --git a/src/components/Wrapper/Toolbar.tsx b/src/components/Wrapper/Toolbar.tsx index efaa4c9b7..337314e48 100644 --- a/src/components/Wrapper/Toolbar.tsx +++ b/src/components/Wrapper/Toolbar.tsx @@ -12,51 +12,43 @@ import { import { useQueryClient } from "@tanstack/react-query"; import * as React from "react"; import { useCookies } from "react-cookie"; -import { connect } from "react-redux"; +import { useDispatch } from "react-redux"; import { useLocation, useNavigate } from "react-router"; -import type { Dispatch } from "redux"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useTypedSelector } from "../../store/hooks"; -import type { ApplicationState } from "../../store/root/applicationState"; -import { onDropdownSelect } from "../../store/ui/actions"; -import type { IUiState } from "../../store/ui/types"; -import { setLogoutSuccess } from "../../store/user/actions"; -import type { IUserState } from "../../store/user/types"; +import { onDropdownSelect } from "../../store/ui/uiSlice"; +import { setLogoutSuccess } from "../../store/user/userSlice"; import { ThemeContext } from "../DarkTheme/useTheme"; import FeedDetails from "../FeedDetails"; import CartNotify from "./CartNotify"; -interface IPropsFromDispatch { - onDropdownSelect: typeof onDropdownSelect; - setLogoutSuccess: typeof setLogoutSuccess; - token?: string | null; -} - -interface ComponentProps { +type ToolbarComponentProps = { showToolbar: boolean; -} -type AllProps = IUserState & IUiState & IPropsFromDispatch & ComponentProps; + token: string; +}; -const ToolbarComponent: React.FC = (props: AllProps) => { +const ToolbarComponent: React.FC = ( + props: ToolbarComponentProps, +) => { + const { token } = props; + const dispatch = useDispatch(); const drawerState = useTypedSelector((state) => state.drawers); - const fullScreen = drawerState?.preview.open && drawerState.preview.maximized; const navigate = useNavigate(); const location = useLocation(); const [_, _setCookie, removeCookie] = useCookies(); const { isDarkTheme, toggleTheme } = React.useContext(ThemeContext); const queryClient = useQueryClient(); - const { setLogoutSuccess, token }: IPropsFromDispatch = props; - const { username, isDropdownOpen }: AllProps = props; + const username = useTypedSelector((state) => state.user.username); + const isDropdownOpen = useTypedSelector((state) => state.ui.isDropdownOpen); + const onDropdownToggle = () => { - const { onDropdownSelect } = props; - onDropdownSelect(!props.isDropdownOpen); + dispatch(onDropdownSelect(!isDropdownOpen)); }; const handleChange = () => { toggleTheme(); }; - // Description: Logout user const onLogout = () => { queryClient.clear(); @@ -64,16 +56,13 @@ const ToolbarComponent: React.FC = (props: AllProps) => { removeCookie("username", { path: "/", }); - removeCookie(`${username}_token`, { path: "/", }); - removeCookie("isStaff", { path: "/", }); - - setLogoutSuccess(); + dispatch(setLogoutSuccess()); }; const copyLoginCommand = () => { @@ -161,14 +150,4 @@ const ToolbarComponent: React.FC = (props: AllProps) => { ); }; -const mapDispatchToProps = (dispatch: Dispatch) => ({ - onDropdownSelect: (isOpened: boolean) => dispatch(onDropdownSelect(isOpened)), - setLogoutSuccess: () => dispatch(setLogoutSuccess()), -}); - -const mapStateToProps = ({ ui, user }: ApplicationState) => ({ - isDropdownOpen: ui.isDropdownOpen, - username: user.username, -}); - -export default connect(mapStateToProps, mapDispatchToProps)(ToolbarComponent); +export default ToolbarComponent; diff --git a/src/components/Wrapper/index.tsx b/src/components/Wrapper/index.tsx index e7cf1521b..e44c5db76 100644 --- a/src/components/Wrapper/index.tsx +++ b/src/components/Wrapper/index.tsx @@ -1,31 +1,26 @@ import { Page } from "@patternfly/react-core"; import type * as React from "react"; -import { connect } from "react-redux"; -import type { Dispatch } from "redux"; import { useTypedSelector } from "../../store/hooks"; -import type { ApplicationState } from "../../store/root/applicationState"; -import { onSidebarToggle, setIsNavOpen } from "../../store/ui/actions"; -import type { IUiState } from "../../store/ui/types"; -import type { IUserState } from "../../store/user/types"; +import { useDispatch } from "react-redux"; import Header from "./Header"; import Sidebar, { AnonSidebar } from "./Sidebar"; import "./wrapper.css"; +import { setIsNavOpen } from "../../store/ui/uiSlice"; -interface IOtherProps { - children: any; - user: IUserState; - niivueActive: boolean; -} -interface IPropsFromDispatch { - onSidebarToggle: typeof onSidebarToggle; - setIsNavOpen: typeof setIsNavOpen; -} -type AllProps = IUiState & IOtherProps & IPropsFromDispatch; +type WrapperProps = { + children: React.ReactElement[]; +}; -const Wrapper: React.FC = (props: AllProps) => { - const { children, user, niivueActive }: IOtherProps = props; +const Wrapper = (props: WrapperProps) => { + const { children } = props; + const dispatch = useDispatch(); + const { isNavOpen, sidebarActiveItem } = useTypedSelector( + (state) => state.ui, + ); + const user = useTypedSelector((state) => state.user); + const niivueActive = sidebarActiveItem === "niivue"; const onNavToggle = () => { - props.setIsNavOpen(!props.isNavOpen); + dispatch(setIsNavOpen(!isNavOpen)); }; const onPageResize = ( @@ -33,20 +28,20 @@ const Wrapper: React.FC = (props: AllProps) => { data: { mobileView: boolean; windowSize: number }, ) => { if (data.mobileView) { - props.setIsNavOpen(false); + dispatch(setIsNavOpen(false)); } // The default setting of the niivue viewer is without a sidebar active. It explicitly set's it to false in it's component. if (!data.mobileView && !niivueActive) { - props.setIsNavOpen(true); + dispatch(setIsNavOpen(true)); } }; const isLoggedIn = useTypedSelector(({ user }) => user.isLoggedIn); const sidebar = isLoggedIn ? ( - + ) : ( - + ); return ( @@ -61,18 +56,4 @@ const Wrapper: React.FC = (props: AllProps) => { ); }; -const mapDispatchToProps = (dispatch: Dispatch) => ({ - onSidebarToggle: (isOpened: boolean) => dispatch(onSidebarToggle(isOpened)), - setIsNavOpen: (isOpened: boolean) => dispatch(setIsNavOpen(isOpened)), -}); - -const mapStateToProps = ({ ui, user }: ApplicationState) => ({ - isNavOpen: ui.isNavOpen, - loading: ui.loading, - niivueActive: ui.sidebarActiveItem === "niivue", - user, -}); - -const WrapperConnect = connect(mapStateToProps, mapDispatchToProps)(Wrapper); - -export default WrapperConnect; +export default Wrapper; diff --git a/src/store/cart/actions.ts b/src/store/cart/actions.ts deleted file mode 100644 index f5a478e40..000000000 --- a/src/store/cart/actions.ts +++ /dev/null @@ -1,93 +0,0 @@ -import type { - Feed, - FileBrowserFolder, - FileBrowserFolderFile, -} from "@fnndsc/chrisapi"; -import { action } from "typesafe-actions"; -import { - type FeedCreationStatus, - ICartActionTypes, - type SelectionPayload, - type UploadPayload, -} from "./types"; - -type OperationPayload = { - paths: SelectionPayload[]; - username: string; -}; - -//Type to be determined -export const setSelectFolder = (selectPayload: { - path: string; - type: string; - payload: FileBrowserFolder | FileBrowserFolderFile; -}) => action(ICartActionTypes.SET_SELECTED_PATHS, selectPayload); - -export const clearSelectFolder = (path: string) => - action(ICartActionTypes.CLEAR_SELECTED_PATHS, path); - -export const setToggleCart = () => action(ICartActionTypes.SET_TOGGLE_CART); - -export const startDownload = (payload: OperationPayload) => - action(ICartActionTypes.START_DOWNLOAD, payload); - -export const setFileDownloadStatus = (payload: { - id: number; - step: string; - fileName: string; - error?: string; -}) => action(ICartActionTypes.SET_FILE_DOWNLOAD_STATUS, payload); - -export const setFolderDownloadStatus = (payload: { - id: number; - step: string; - fileName?: string; - error?: string; - feed?: Feed; -}) => action(ICartActionTypes.SET_FOLDER_DOWNLOAD_STATUS, payload); - -export const startUpload = (payload: UploadPayload) => - action(ICartActionTypes.START_UPLOAD, payload); - -export const startAnonymize = (payload: OperationPayload) => - action(ICartActionTypes.START_ANONYMIZE, payload); - -export const clearFeedCreationStatus = () => - action(ICartActionTypes.CLEAR_FEED_STATE); - -export const setFileUploadStatus = (payload: { - step: string; - fileName: string; - progress: number; - controller: AbortController | null; - path: string; - type: string; -}) => action(ICartActionTypes.SET_FILE_UPLOAD_STATUS, payload); - -export const setFolderUploadStatus = (payload: { - step: string; - fileName: string; - totalCount: number; - currentCount: number; - controller: AbortController | null; - path: string; - type: string; -}) => action(ICartActionTypes.SET_FOLDER_UPLOAD_STATUS, payload); - -export const setBulkSelectPaths = (payload: SelectionPayload[]) => - action(ICartActionTypes.SET_BULK_SELECTED_PATHS, payload); - -export const clearDownloadStatus = (payload: { - path: string; - type: string; -}) => action(ICartActionTypes.CLEAR_DOWNLOAD_STATUS, payload); - -export const removeIndividualSelection = (payload: SelectionPayload) => - action(ICartActionTypes.REMOVE_SELECTED_PAYLOAD, payload); - -export const clearUploadState = (payload: { type: string; id: string }) => - action(ICartActionTypes.CLEAR_UPLOAD_STATE, payload); - -export const cancelUpload = (payload: { type: string; id: string }) => - action(ICartActionTypes.CANCEL_UPLOAD, payload); -export const clearCart = () => action(ICartActionTypes.CLEAR_CART); diff --git a/src/store/cart/cartSlice.ts b/src/store/cart/cartSlice.ts new file mode 100644 index 000000000..a4ad7d0d5 --- /dev/null +++ b/src/store/cart/cartSlice.ts @@ -0,0 +1,177 @@ +// cartSlice.ts +import { createSlice, type PayloadAction } from "@reduxjs/toolkit"; +import type { + DownloadTypes, + ICartState, + SelectionPayload, + OperationPayload, + UploadPayload, +} from "./types"; + +const initialState: ICartState = { + selectedPaths: [], + openCart: false, + folderDownloadStatus: {}, + fileDownloadStatus: {}, + folderUploadStatus: {}, + fileUploadStatus: {}, +}; + +const cartSlice = createSlice({ + name: "cart", + initialState, + reducers: { + startUpload(state, _action: PayloadAction) { + state.openCart = true; + }, + setSelectedPaths(state, action: PayloadAction) { + state.selectedPaths.push(action.payload); + }, + setBulkSelectedPaths(state, action: PayloadAction) { + state.selectedPaths.push(...action.payload); + }, + clearSelectedPaths(state, action: PayloadAction) { + state.selectedPaths = state.selectedPaths.filter( + (pathObj) => pathObj.path !== action.payload, + ); + }, + clearDownloadStatus( + state, + action: PayloadAction<{ path: string; type: string }>, + ) { + const { path, type } = action.payload; + if (type === "folder") { + delete state.folderDownloadStatus[path]; + } else if (type === "file") { + delete state.fileDownloadStatus[path]; + } + }, + setToggleCart(state) { + state.openCart = !state.openCart; + }, + setFileDownloadStatus( + state, + action: PayloadAction<{ + id: number; + step: DownloadTypes; + fileName: string; + error?: string; + }>, + ) { + const { id, step, fileName, error } = action.payload; + state.fileDownloadStatus[id] = { step, fileName, error }; + }, + setFolderDownloadStatus( + state, + action: PayloadAction<{ + id: number; + step: DownloadTypes; + fileName?: string; + error?: string; + feed?: any; + }>, + ) { + const { id, step, fileName, error, feed } = action.payload; + state.folderDownloadStatus[id] = { step, error, fileName, feed }; + }, + setFileUploadStatus( + state, + action: PayloadAction<{ + step: string; + fileName: string; + progress: number; + controller: AbortController | null; + path: string; + type: string; + }>, + ) { + const { step, fileName, progress, controller, path, type } = + action.payload; + state.fileUploadStatus[fileName] = { + currentStep: step, + progress, + controller, + path, + type, + }; + }, + setFolderUploadStatus( + state, + action: PayloadAction<{ + step: string; + fileName: string; + totalCount: number; + currentCount: number; + controller: AbortController | null; + path: string; + type: string; + }>, + ) { + const { + step, + fileName, + totalCount, + currentCount, + controller, + path, + type, + } = action.payload; + state.folderUploadStatus[fileName] = { + currentStep: step, + done: currentCount, + total: totalCount, + controller, + path, + type, + }; + }, + removeSelectedPayload(state, action: PayloadAction) { + state.selectedPaths = state.selectedPaths.filter( + (currentPayload) => currentPayload.path !== action.payload.path, + ); + }, + clearUploadState( + state, + action: PayloadAction<{ id: string; type: string }>, + ) { + const { id, type } = action.payload; + if (type === "folder") { + delete state.folderUploadStatus[id]; + } else { + delete state.fileUploadStatus[id]; + } + }, + clearCart(state) { + state.selectedPaths = []; + }, + cancelUpload( + _state, + _action: PayloadAction<{ type: string; id: string }>, + ) {}, + clearFeedCreationStatus(_state) {}, + startDownload(_state, _action: PayloadAction) {}, + startAnonymize(_state, _action: PayloadAction) {}, + }, +}); + +export const { + startUpload, + setSelectedPaths, + setBulkSelectedPaths, + clearSelectedPaths, + clearDownloadStatus, + setToggleCart, + setFileDownloadStatus, + setFolderDownloadStatus, + setFileUploadStatus, + setFolderUploadStatus, + removeSelectedPayload, + clearUploadState, + clearCart, + cancelUpload, + clearFeedCreationStatus, + startDownload, + startAnonymize, +} = cartSlice.actions; + +export default cartSlice.reducer; diff --git a/src/store/cart/downloadSaga.ts b/src/store/cart/downloadSaga.ts index 57428115e..7bbcedebe 100644 --- a/src/store/cart/downloadSaga.ts +++ b/src/store/cart/downloadSaga.ts @@ -17,13 +17,18 @@ import { getFileName } from "../../api/common"; import type { IActionTypeParam } from "../../api/model"; import { getPlugin } from "../../components/CreateFeed/createFeedHelper"; import { downloadFile } from "../hooks"; -import { setFileDownloadStatus, setFolderDownloadStatus } from "./actions"; -import { ICartActionTypes, type SelectionPayload } from "./types"; +import { + setFileDownloadStatus, + setFolderDownloadStatus, + startDownload, + startAnonymize, +} from "./cartSlice"; +import { DownloadTypes, type SelectionPayload } from "./types"; export function* setStatus( type: string, id: number, - step: "started" | "processing" | "finished" | "cancelled", + step: DownloadTypes, fileName: string, error?: string, feed?: Feed, @@ -91,7 +96,7 @@ function* downloadFolder( `Failed to find the pipeline. Is this '${pipelineName}' registered?`, ); } - yield setStatus(type, id, "processing", path); + yield setStatus(type, id, DownloadTypes.progress, path); const pipelines = pipelineList.getItems() as unknown as Pipeline[]; const currentPipeline = pipelines[0]; try { @@ -101,7 +106,7 @@ function* downloadFolder( : `Library Anonymize for ${folderNameForFeed}`; const { feed, createdInstance } = yield call(createFeed, [path], feedName); // Set Status - yield setStatus(type, id, "processing", path, "", feed); + yield setStatus(type, id, DownloadTypes.progress, path, "", feed); // Add a workflow const workflow: Workflow = yield client.createWorkflow( currentPipeline.data.id, @@ -178,16 +183,23 @@ function* handleIndividualDownload( const pathForState = type === "file" ? payload.data.fname : payload.data.path; try { - yield call(setStatus, type, id, "started", pathForState); + yield call(setStatus, type, id, DownloadTypes.started, pathForState); if (type === "file" && pipelineType === "Download Pipeline") { yield call(downloadFile, payload as FileBrowserFolderFile); } else { yield call(downloadFolder, payload, username, pipelineType); } - yield call(setStatus, type, id, "finished", pathForState); + yield call(setStatus, type, id, DownloadTypes.finished, pathForState); } catch (error) { const errMsg = error instanceof Error ? error.message : "Unknown error"; - yield call(setStatus, type, id, "cancelled", pathForState, errMsg); + yield call( + setStatus, + type, + id, + DownloadTypes.cancelled, + pathForState, + errMsg, + ); } } @@ -206,9 +218,9 @@ function* handleAnonymize(action: IActionTypeParam) { } export function* watchAnonymize() { - yield takeEvery(ICartActionTypes.START_ANONYMIZE, handleAnonymize); + yield takeEvery(startAnonymize.type, handleAnonymize); } export function* watchDownload() { - yield takeEvery(ICartActionTypes.START_DOWNLOAD, handleDownload); + yield takeEvery(startDownload.type, handleDownload); } diff --git a/src/store/cart/reducer.ts b/src/store/cart/reducer.ts deleted file mode 100644 index 017408b21..000000000 --- a/src/store/cart/reducer.ts +++ /dev/null @@ -1,129 +0,0 @@ -import type { Reducer } from "redux"; -import { produce } from "immer"; -import { type ICartState, ICartActionTypes } from "./types"; - -const initialState: ICartState = { - selectedPaths: [], - openCart: false, - folderDownloadStatus: {}, - fileDownloadStatus: {}, - folderUploadStatus: {}, - fileUploadStatus: {}, -}; - -const reducer: Reducer = produce( - (draft: ICartState, action: typeof ICartActionTypes) => { - switch (action.type) { - case ICartActionTypes.START_UPLOAD: { - draft.openCart = true; - break; - } - - case ICartActionTypes.SET_SELECTED_PATHS: { - draft.selectedPaths.push(action.payload); - break; - } - - case ICartActionTypes.SET_BULK_SELECTED_PATHS: { - draft.selectedPaths.push(...action.payload); - break; - } - - case ICartActionTypes.CLEAR_SELECTED_PATHS: { - draft.selectedPaths = draft.selectedPaths.filter( - (pathObj) => pathObj.path !== action.payload, - ); - break; - } - - case ICartActionTypes.CLEAR_DOWNLOAD_STATUS: { - const { path, type } = action.payload; - type === "folder" && delete draft.folderDownloadStatus[path]; - type === "file" && delete draft.fileDownloadStatus[path]; - break; - } - - case ICartActionTypes.SET_TOGGLE_CART: { - draft.openCart = !draft.openCart; - break; - } - - case ICartActionTypes.SET_FILE_DOWNLOAD_STATUS: { - const { id, step, error, fileName } = action.payload; - draft.fileDownloadStatus[id] = { step, fileName, error }; - break; - } - - case ICartActionTypes.SET_FOLDER_DOWNLOAD_STATUS: { - const { id, step, error, fileName, feed } = action.payload; - - draft.folderDownloadStatus[id] = { step, fileName, error, feed }; - break; - } - - case ICartActionTypes.SET_FILE_UPLOAD_STATUS: { - const { step, fileName, progress, controller, path, type } = - action.payload; - draft.fileUploadStatus[fileName] = { - currentStep: step, - progress, - controller, - path, - type, - }; - break; - } - - case ICartActionTypes.SET_FOLDER_UPLOAD_STATUS: { - const { - step, - fileName, - totalCount, - currentCount, - controller, - path, - type, - } = action.payload; - draft.folderUploadStatus[fileName] = { - currentStep: step, - done: currentCount, - total: totalCount, - controller, - path, - type, - }; - break; - } - - case ICartActionTypes.REMOVE_SELECTED_PAYLOAD: { - draft.selectedPaths = draft.selectedPaths.filter((currentPayload) => { - return currentPayload.path !== action.payload.path; - }); - break; - } - - case ICartActionTypes.CLEAR_UPLOAD_STATE: { - const { id, type } = action.payload; - - if (type === "folder") { - delete draft.folderUploadStatus[id]; - } else { - delete draft.fileUploadStatus[id]; - } - break; - } - - case ICartActionTypes.CLEAR_CART: { - draft.selectedPaths = []; - break; - } - - default: { - return draft; - } - } - }, - initialState, -); - -export { reducer as cartReducer }; diff --git a/src/store/cart/types.ts b/src/store/cart/types.ts index 8335e8818..3d1b78cfa 100644 --- a/src/store/cart/types.ts +++ b/src/store/cart/types.ts @@ -1,4 +1,3 @@ -import keyMirror from "keymirror"; import type { Feed, FileBrowserFolder, @@ -15,7 +14,7 @@ export type FolderUploadObject = { currentStep: string; done: number; total: number; - controller: AbortController; + controller: AbortController | null; path: string; type: string; }; @@ -23,7 +22,7 @@ export type FolderUploadObject = { export type FileUploadObject = { currentStep: string; progress: number; - controller: AbortController; + controller: AbortController | null; path: string; type: string; }; @@ -47,7 +46,7 @@ export type DownloadStatus = { [key: string]: { step: DownloadTypes; error?: string; - fileName: string; + fileName?: string; feed?: Feed; }; }; @@ -73,24 +72,7 @@ export interface UploadPayload { currentPath: string; } -export const ICartActionTypes = keyMirror({ - SET_SELECTED_PATHS: null, - SET_BULK_SELECTED_PATHS: null, - CLEAR_SELECTED_PATHS: null, - CLEAR_CART: null, - CLEAR_UPLOAD_STATE: null, - SET_TOGGLE_CART: null, - START_DOWNLOAD: null, - CREATE_FEED: null, - CREATE_FEED_SUCCESS: null, - SET_FILE_DOWNLOAD_STATUS: null, - SET_FOLDER_DOWNLOAD_STATUS: null, - START_UPLOAD: null, - START_ANONYMIZE: null, - SET_FILE_UPLOAD_STATUS: null, - SET_FOLDER_UPLOAD_STATUS: null, - CLEAR_DOWNLOAD_STATUS: null, - REMOVE_SELECTED_PAYLOAD: null, - CANCEL_UPLOAD: null, - CLEAR_FEED_STATE: null, -}); +export type OperationPayload = { + paths: SelectionPayload[]; + username: string; +}; diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index 13872c2ff..7c9cb99f8 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -5,12 +5,16 @@ import { END, type EventChannel, eventChannel } from "redux-saga"; import { all, call, put, select, take, takeEvery } from "redux-saga/effects"; import ChrisAPIClient from "../../api/chrisapiclient"; import type { IActionTypeParam } from "../../api/model"; -import { setFileUploadStatus, setFolderUploadStatus } from "./actions"; import { - type FileUploadObject, - type FolderUploadObject, - ICartActionTypes, - type UploadPayload, + cancelUpload, + setFileUploadStatus, + setFolderUploadStatus, + startUpload, +} from "./cartSlice"; +import type { + FileUploadObject, + FolderUploadObject, + UploadPayload, } from "./types"; function createUploadChannel(config: any) { @@ -221,11 +225,11 @@ function* handleUpload(action: IActionTypeParam) { } export function* watchUpload() { - yield takeEvery(ICartActionTypes.START_UPLOAD, handleUpload); + yield takeEvery(startUpload.type, handleUpload); } export function* watchCancelUpload() { - yield takeEvery(ICartActionTypes.CANCEL_UPLOAD, function* (action: any) { + yield takeEvery(cancelUpload.type, function* (action: any) { const { id: fileName, type } = action.payload; if (type === "folder") { diff --git a/src/store/configureStore.ts b/src/store/configureStore.ts index 3a8add27b..fc745d0c4 100644 --- a/src/store/configureStore.ts +++ b/src/store/configureStore.ts @@ -1,47 +1,55 @@ /* * File: configureStore.ts * Description: this is where the store comes together: - * It contains the createStore() => store, rootReducers, rootSagas, logger and other middleware + * It contains the configureStore() => store, rootReducers, rootSagas, logger, and other middleware * Author: ChRIS UI */ -import { - type Store, - legacy_createStore as createStore, - applyMiddleware, -} from "redux"; -import { createLogger } from "redux-logger"; +import { configureStore } from "@reduxjs/toolkit"; import createSagaMiddleware from "redux-saga"; -import type { RootState } from "./root/applicationState"; -import rootReducer from "./root/rootReducer"; +import cartReducer from "./cart/cartSlice"; +import drawerReducer from "./drawer/drawerSlice"; +import explorerReducer from "./explorer/explorerSlice"; +import feedReducer from "./feed/feedSlice"; +import pluginReducer from "./plugin/pluginSlice"; +import pluginInstanceReducer from "./pluginInstance/pluginInstanceSlice"; +import resourceReducer from "./resources/resourceSlice"; import { rootSaga } from "./root/rootSaga"; -import { composeWithDevTools } from "redux-devtools-extension"; +import uiReducer from "./ui/uiSlice"; +import userReducer from "./user/userSlice"; -export const store = configureStore(); - -function configureStore(): Store { - // Custom redux logger - const logger = createLogger({ - collapsed: true, - }); +export const store = configureAppStore(); +function configureAppStore() { // Build Saga middleware const sagaMiddleware = createSagaMiddleware(); - // Build ALL Middleware - let middleware; - if (import.meta.env.NODE_ENV !== "production") { - //@ts-ignore - middleware = applyMiddleware(sagaMiddleware, logger); - } else { - middleware = applyMiddleware(sagaMiddleware); - } - - // Create store - const store = createStore(rootReducer, {}, composeWithDevTools(middleware)); + // Create store with Redux Toolkit's configureStore + const store = configureStore({ + reducer: { + user: userReducer, + cart: cartReducer, + drawers: drawerReducer, + explorer: explorerReducer, + feed: feedReducer, + plugin: pluginReducer, + instance: pluginInstanceReducer, + resource: resourceReducer, + ui: uiReducer, + }, + middleware: (getDefaultMiddleware) => + getDefaultMiddleware({ + thunk: false, // Disabling thunk since we're using sagas + serializableCheck: false, // Disable serializable check if necessary + }).concat(sagaMiddleware), + devTools: import.meta.env.NODE_ENV !== "production", + }); // Run the root saga sagaMiddleware.run(rootSaga); - // Return the store object. return store; } + +// Export RootState type if needed elsewhere +export type AppDispatch = typeof store.dispatch; +export type AppStore = ReturnType; diff --git a/src/store/drawer/actions.ts b/src/store/drawer/actions.ts deleted file mode 100644 index 08d0b4a17..000000000 --- a/src/store/drawer/actions.ts +++ /dev/null @@ -1,25 +0,0 @@ -import { action } from "typesafe-actions"; -import { DrawerActionTypes } from "./types"; - -export const setDrawerState = (drawerState: { - actionType: string; - open: boolean; - maximized: boolean; - minimized: boolean; -}) => { - return action(DrawerActionTypes.SET_DRAWER_STATE, drawerState); -}; - -export const setFilePreviewPanel = () => { - return action(DrawerActionTypes.SET_PREVIEW_PANEL); -}; - -export const setDrawerCurrentlyActive = ( - panel: string, - currentlyActive: string, -) => { - return action(DrawerActionTypes.SET_CURRENTLY_ACTIVE, { - panel, - currentlyActive, - }); -}; diff --git a/src/store/drawer/drawerSlice.ts b/src/store/drawer/drawerSlice.ts new file mode 100644 index 000000000..a38991b59 --- /dev/null +++ b/src/store/drawer/drawerSlice.ts @@ -0,0 +1,122 @@ +import { createSlice, type PayloadAction } from "@reduxjs/toolkit"; + +interface DrawerState { + open: boolean; + maximized: boolean; + minimized: boolean; + currentlyActive: string; +} + +export interface IDrawerState { + graph: DrawerState; + node: DrawerState; + files: DrawerState; + preview: DrawerState; +} + +export interface DrawerPayloadType { + actionType: keyof IDrawerState; // Adjusted to be more type-safe + open: boolean; + maximized: boolean; + minimized: boolean; +} + +const initialState: IDrawerState = { + graph: { + open: true, + maximized: false, + minimized: false, + currentlyActive: "graph", + }, + node: { + open: true, + maximized: false, + minimized: false, + currentlyActive: "node", + }, + files: { + open: true, + maximized: false, + minimized: false, + currentlyActive: "files", + }, + preview: { + open: false, + maximized: false, + minimized: false, + currentlyActive: "preview", + }, +}; + +const drawerSlice = createSlice({ + name: "drawer", + initialState, + reducers: { + setDrawerState: (state, action: PayloadAction) => { + const { actionType, open, maximized, minimized } = action.payload; + if (maximized) { + getMaximizedObject(state, action.payload); + } else if (minimized) { + getMinimizedObject(state, action.payload); + } else { + state[actionType] = { + ...state[actionType], + open, + maximized, + }; + } + }, + setFilePreviewPanel: (state) => { + state.preview = { + open: true, + maximized: false, + minimized: false, + currentlyActive: "preview", + }; + }, + setDrawerCurrentlyActive: ( + state, + action: PayloadAction<{ + panel: keyof IDrawerState; + currentlyActive: string; + }>, + ) => { + const { panel, currentlyActive } = action.payload; + state[panel].currentlyActive = currentlyActive; + }, + }, +}); + +export const { setDrawerState, setFilePreviewPanel, setDrawerCurrentlyActive } = + drawerSlice.actions; +export default drawerSlice.reducer; + +export const getMaximizedObject = ( + draft: IDrawerState, + payload: DrawerPayloadType, +) => { + for (const key in draft) { + if (key !== payload.actionType) { + draft[key as keyof IDrawerState].open = false; + draft[key as keyof IDrawerState].maximized = false; + } else { + draft[key].open = payload.open; + draft[key].maximized = payload.maximized; + } + } +}; + +export const getMinimizedObject = ( + draft: IDrawerState, + payload: DrawerPayloadType, +) => { + for (const key in draft) { + if (key !== payload.actionType) { + draft[key as keyof IDrawerState].open = true; + draft[key as keyof IDrawerState].maximized = false; + } else { + draft[key].open = payload.open; + draft[key].maximized = payload.maximized; + } + } +}; diff --git a/src/store/drawer/reducer.ts b/src/store/drawer/reducer.ts deleted file mode 100644 index 2e3aaf0c2..000000000 --- a/src/store/drawer/reducer.ts +++ /dev/null @@ -1,103 +0,0 @@ -import { produce } from "immer"; -import type { Reducer } from "redux"; -import { - DrawerActionTypes, - type DrawerPayloadType, - type IDrawerState, -} from "./types"; - -const initialState: IDrawerState = { - graph: { - open: true, - maximized: false, - currentlyActive: "graph", - }, - node: { - open: true, - maximized: false, - currentlyActive: "node", - }, - files: { - open: true, - maximized: false, - currentlyActive: "files", - }, - preview: { - open: false, - maximized: false, - currentlyActive: "preview", - }, -}; - -const reducer: Reducer = produce( - (draft: IDrawerState, action: typeof DrawerActionTypes) => { - switch (action.type) { - case DrawerActionTypes.SET_DRAWER_STATE: { - if (action.payload.maximized === true) { - getMaximizedObject(draft, action.payload); - } else if (action.payload.minimized === true) { - getMinimizedObject(draft, action.payload); - } else { - draft[action.payload.actionType] = { - ...draft[action.payload.actionType], - open: action.payload.open, - maximized: action.payload.maximized, - }; - } - break; - } - - case DrawerActionTypes.SET_PREVIEW_PANEL: { - draft.preview = { - open: true, - maximized: false, - currentlyActive: "preview", - }; - break; - } - - case DrawerActionTypes.SET_CURRENTLY_ACTIVE: { - draft[action.payload.panel].currentlyActive = - action.payload.currentlyActive; - break; - } - - default: { - return draft; - } - } - }, - initialState, -); - -export { reducer as drawerReducer }; - -export const getMaximizedObject = ( - draft: IDrawerState, - payload: DrawerPayloadType, -) => { - for (const property in draft) { - if (property !== payload.actionType) { - draft[property].open = false; - draft[property].maximized = false; - } else { - draft[property].open = payload.open; - draft[property].maximized = payload.maximized; - } - } -}; - -export const getMinimizedObject = ( - draft: IDrawerState, - payload: DrawerPayloadType, -) => { - for (const property in draft) { - if (property !== payload.actionType) { - draft[property].open = true; - draft[property].maximized = false; - } else { - draft[property].open = payload.open; - draft[property].maximized = payload.maximized; - } - } -}; diff --git a/src/store/drawer/types.ts b/src/store/drawer/types.ts deleted file mode 100644 index 5f60153bd..000000000 --- a/src/store/drawer/types.ts +++ /dev/null @@ -1,22 +0,0 @@ -import keyMirror from "keymirror"; - -export interface IDrawerState { - [key: string]: { - open: boolean; - maximized: boolean; - currentlyActive: string; - }; -} - -export interface DrawerPayloadType { - actionType: string; - open: boolean; - maximized: boolean; - minimized: boolean; -} - -export const DrawerActionTypes = keyMirror({ - SET_DRAWER_STATE: null, - SET_PREVIEW_PANEL: null, - SET_CURRENTLY_ACTIVE: null, -}); diff --git a/src/store/explorer/actions.ts b/src/store/explorer/actions.ts deleted file mode 100644 index 82dcf8601..000000000 --- a/src/store/explorer/actions.ts +++ /dev/null @@ -1,9 +0,0 @@ -import { action } from "typesafe-actions"; -import { ExplorerActionTypes } from "./types"; - -//Type to be determined -export const setSelectedFile = (selectedFile: any) => - action(ExplorerActionTypes.SET_SELECTED_FILE, selectedFile); - -export const clearSelectedFile = () => - action(ExplorerActionTypes.CLEAR_SELECTED_FILE); diff --git a/src/store/explorer/explorerSlice.ts b/src/store/explorer/explorerSlice.ts new file mode 100644 index 000000000..29e6ae019 --- /dev/null +++ b/src/store/explorer/explorerSlice.ts @@ -0,0 +1,26 @@ +import { createSlice, type PayloadAction } from "@reduxjs/toolkit"; +import type { IExplorerState } from "./types"; +import type { FileBrowserFolderFile } from "@fnndsc/chrisapi"; + +const initialState: IExplorerState = { + selectedFile: undefined, +}; + +const explorerSlice = createSlice({ + name: "explorer", + initialState, + reducers: { + setSelectedFile( + state, + action: PayloadAction, + ) { + state.selectedFile = action.payload; + }, + clearSelectedFile(state) { + state.selectedFile = undefined; + }, + }, +}); + +export const { setSelectedFile, clearSelectedFile } = explorerSlice.actions; +export default explorerSlice.reducer; diff --git a/src/store/explorer/reducer.ts b/src/store/explorer/reducer.ts deleted file mode 100644 index 62411d19b..000000000 --- a/src/store/explorer/reducer.ts +++ /dev/null @@ -1,30 +0,0 @@ -import { produce } from "immer"; -import type { Reducer } from "redux"; -import { ExplorerActionTypes, type IExplorerState } from "./types"; - -const initialState: IExplorerState = { - selectedFile: undefined, -}; - -const reducer: Reducer = produce( - (draft: IExplorerState, action: typeof ExplorerActionTypes) => { - switch (action.type) { - case ExplorerActionTypes.SET_SELECTED_FILE: { - draft.selectedFile = action.payload; - break; - } - - case ExplorerActionTypes.CLEAR_SELECTED_FILE: { - draft.selectedFile = undefined; - break; - } - - default: { - return draft; - } - } - }, - initialState, -); - -export { reducer as explorerReducer }; diff --git a/src/store/explorer/types.ts b/src/store/explorer/types.ts index 54071ff60..7ef267e42 100644 --- a/src/store/explorer/types.ts +++ b/src/store/explorer/types.ts @@ -9,7 +9,6 @@ import type { FileBrowserFolder, FileBrowserFolderFile, } from "@fnndsc/chrisapi"; -import keyMirror from "keymirror"; export type Key = string | number; @@ -71,8 +70,3 @@ export type CheckInfo = { export interface IExplorerState { selectedFile?: FileBrowserFolderFile; } - -export const ExplorerActionTypes = keyMirror({ - SET_SELECTED_FILE: null, - CLEAR_SELECTED_FILE: null, -}); diff --git a/src/store/feed/actions.ts b/src/store/feed/actions.ts deleted file mode 100644 index 8d531017f..000000000 --- a/src/store/feed/actions.ts +++ /dev/null @@ -1,48 +0,0 @@ -import { action } from "typesafe-actions"; -import type { Feed } from "@fnndsc/chrisapi"; -import { FeedActionTypes } from "./types"; - -export const getFeedSuccess = (item: Feed) => - action(FeedActionTypes.GET_FEED_SUCCESS, item); - -export const setFeedTreeProp = (orientation: string) => - action(FeedActionTypes.GET_FEED_TREE_PROP, orientation); - -export const setTranslate = (translate: { x: number; y: number }) => - action(FeedActionTypes.TRANSLATE_PROP, translate); - -export const setFeedLayout = () => action(FeedActionTypes.SET_LAYOUT); -export const resetFeed = () => action(FeedActionTypes.RESET_FEED); - -export const setBulkSelect = (feeds: Feed[], selectAllToggle: boolean) => - action(FeedActionTypes.BULK_SELECT, { - feeds, - selectAllToggle, - }); - -export const toggleSelectAll = (flag: boolean) => - action(FeedActionTypes.TOGGLE_SELECT_ALL, flag); - -export const setAllSelect = (feeds: Feed[]) => - action(FeedActionTypes.SET_ALL_SELECT, feeds); - -export const removeAllSelect = (feeds: Feed[]) => - action(FeedActionTypes.REMOVE_ALL_SELECT, feeds); - -export const removeBulkSelect = (feeds: Feed[], selectAllToggle: boolean) => - action(FeedActionTypes.REMOVE_BULK_SELECT, { - feeds, - selectAllToggle, - }); - -export const stopFetchingFeedResources = (feed: Feed) => - action(FeedActionTypes.STOP_FETCH_FEED_RESOURCES, feed); - -export const cleanupFeedResources = (feed: Feed) => - action(FeedActionTypes.CLEANUP_FEED_RESOURCES, feed); - -export const setSearchFilter = (value: string) => - action(FeedActionTypes.SET_SEARCH_FILTER, value); - -export const setShowToolbar = (toolbar: boolean) => - action(FeedActionTypes.SHOW_TOOLBAR, toolbar); diff --git a/src/store/feed/feedSlice.ts b/src/store/feed/feedSlice.ts new file mode 100644 index 000000000..e7c9eecbe --- /dev/null +++ b/src/store/feed/feedSlice.ts @@ -0,0 +1,73 @@ +import { createSlice, type PayloadAction } from "@reduxjs/toolkit"; +import type { IFeedState } from "./types"; +import type { Feed } from "@fnndsc/chrisapi"; + +// Define the initial state +const initialState: IFeedState = { + currentFeed: { + data: undefined, + error: "", + loading: false, + }, + currentLayout: false, + feedTreeProp: { + orientation: "vertical", + translate: { + x: 0, + y: 0, + }, + }, + searchFilter: { + value: "", + status: false, + }, + showToolbar: false, +}; + +// Create a slice +const feedSlice = createSlice({ + name: "feed", + initialState, + reducers: { + getFeedSuccess(state, action: PayloadAction) { + state.currentFeed.data = action.payload; + state.currentFeed.error = ""; + state.currentFeed.loading = false; + }, + setFeedTreeProp(state, action: PayloadAction) { + const currentOrientation = action.payload; + state.feedTreeProp.orientation = + currentOrientation === "horizontal" ? "vertical" : "horizontal"; + }, + setTranslate(state, action: PayloadAction<{ x: number; y: number }>) { + state.feedTreeProp.translate = action.payload; + }, + setFeedLayout(state) { + state.currentLayout = !state.currentLayout; + }, + resetFeed(_state) { + return initialState; + }, + setSearchFilter(state, action: PayloadAction) { + state.searchFilter.value = action.payload; + state.searchFilter.status = !state.searchFilter.status; + }, + setShowToolbar(state, action: PayloadAction) { + state.showToolbar = action.payload; + }, + }, +}); + +// Export the actions +export const { + getFeedSuccess, + setFeedTreeProp, + setTranslate, + setFeedLayout, + resetFeed, + setSearchFilter, + setShowToolbar, +} = feedSlice.actions; + +// Export the reducer +export default feedSlice.reducer; diff --git a/src/store/feed/reducer.ts b/src/store/feed/reducer.ts deleted file mode 100644 index dc2fed1d2..000000000 --- a/src/store/feed/reducer.ts +++ /dev/null @@ -1,104 +0,0 @@ -import { produce } from "immer"; -import type { Reducer } from "redux"; -import { type IFeedState, FeedActionTypes } from "./types"; - -export const initialState: IFeedState = { - currentFeed: { - data: undefined, - error: "", - loading: false, - }, - currentLayout: false, - feedTreeProp: { - orientation: "vertical", - translate: { - x: 0, - y: 0, - }, - }, - bulkSelect: [], - selectAllToggle: false, - searchFilter: { - value: "", - status: false, - }, - showToolbar: false, -}; - -const reducer: Reducer = produce( - (draft: IFeedState, action: typeof FeedActionTypes) => { - switch (action.type) { - case FeedActionTypes.GET_FEED_SUCCESS: { - draft.currentFeed.data = action.payload; - draft.currentFeed.error = ""; - draft.currentFeed.loading = false; - break; - } - - case FeedActionTypes.SET_LAYOUT: { - draft.currentLayout = !draft.currentLayout; - break; - } - - case FeedActionTypes.TRANSLATE_PROP: { - draft.feedTreeProp.translate = action.payload; - break; - } - - case FeedActionTypes.GET_FEED_TREE_PROP: { - const currentOrientation = action.payload; - draft.feedTreeProp.orientation = - currentOrientation === "horizontal" ? "vertical" : "horizontal"; - break; - } - - case FeedActionTypes.SET_ALL_SELECT: { - draft.bulkSelect = [...action.payload]; - break; - } - - case FeedActionTypes.BULK_SELECT: { - draft.bulkSelect = action.payload.feeds; - draft.selectAllToggle = action.payload.selectAllToggle; - break; - } - - case FeedActionTypes.REMOVE_BULK_SELECT: { - draft.bulkSelect = action.payload.feeds; - draft.selectAllToggle = action.payload.selectAllToggle; - break; - } - - case FeedActionTypes.SET_SEARCH_FILTER: { - draft.searchFilter.value = action.payload; - draft.searchFilter.status = !draft.searchFilter.status; - break; - } - - case FeedActionTypes.TOGGLE_SELECT_ALL: { - draft.selectAllToggle = action.payload; - break; - } - - case FeedActionTypes.REMOVE_ALL_SELECT: { - draft.bulkSelect = []; - break; - } - - case FeedActionTypes.SHOW_TOOLBAR: { - draft.showToolbar = action.payload; - break; - } - - case FeedActionTypes.RESET_FEED: { - return initialState; - } - - default: - return draft; - } - }, - initialState, -); - -export { reducer as feedsReducer }; diff --git a/src/store/feed/types.ts b/src/store/feed/types.ts index 062eb511b..0350921bd 100644 --- a/src/store/feed/types.ts +++ b/src/store/feed/types.ts @@ -4,7 +4,7 @@ * Author: ChRIS UI * Notes: Work in progres ... */ -import keyMirror from "keymirror"; + import type { Feed } from "@fnndsc/chrisapi"; export interface FeedPayload { @@ -34,26 +34,10 @@ export interface IFeedState { currentFeed: FeedPayload; feedTreeProp: FeedTreeProp; currentLayout: boolean; - bulkSelect: Feed[]; - selectAllToggle: boolean; + searchFilter: { status: boolean; value: string; }; showToolbar: boolean; } - -export const FeedActionTypes = keyMirror({ - GET_FEED_SUCCESS: null, - GET_FEED_TREE_PROP: null, - RESET_FEED: null, - SET_LAYOUT: null, - BULK_SELECT: null, - REMOVE_BULK_SELECT: null, - SET_ALL_SELECT: null, - REMOVE_ALL_SELECT: null, - TOGGLE_SELECT_ALL: null, - TRANSLATE_PROP: null, - SET_SEARCH_FILTER: null, - SHOW_TOOLBAR: null, -}); diff --git a/src/store/plugin/actions.ts b/src/store/plugin/actions.ts deleted file mode 100644 index ba608ccc5..000000000 --- a/src/store/plugin/actions.ts +++ /dev/null @@ -1,24 +0,0 @@ -import { action } from "typesafe-actions"; -import { PluginActionTypes } from "./types"; - -import type { PluginParameter, Plugin } from "@fnndsc/chrisapi"; - -export const getParams = (plugin: Plugin) => - action(PluginActionTypes.GET_PARAMS, plugin); - -export const getParamsSuccess = (params: { - required: PluginParameter[]; - dropdown: PluginParameter[]; -}) => action(PluginActionTypes.GET_PARAMS_SUCCESS, params); - -export const getComputeEnv = (plugin: Plugin) => - action(PluginActionTypes.GET_COMPUTE_ENV, plugin); - -export const getComputeEnvSuccess = (computeEnvs: any[]) => - action(PluginActionTypes.GET_COMPUTE_ENV_SUCCESS, computeEnvs); - -export const getComputeEnvError = (error: any) => - action(PluginActionTypes.GET_RESOURCE_ERROR, error); - -export const getNodeOperations = (opType: string) => - action(PluginActionTypes.GET_NODE_OPERATIONS, opType); diff --git a/src/store/plugin/pluginSlice.ts b/src/store/plugin/pluginSlice.ts new file mode 100644 index 000000000..a5e536fb6 --- /dev/null +++ b/src/store/plugin/pluginSlice.ts @@ -0,0 +1,80 @@ +import { type PayloadAction, createSlice } from "@reduxjs/toolkit"; +import type { Plugin, PluginParameter } from "@fnndsc/chrisapi"; + +export interface IPluginState { + parameters: { + required: PluginParameter[]; + dropdown: PluginParameter[]; + }; + computeEnv?: any[]; + resourceError: string; + nodeOperations: { + [key: string]: boolean; + }; +} + +// Define the initial state +const initialState: IPluginState = { + parameters: { + dropdown: [], + required: [], + }, + computeEnv: undefined, + resourceError: "", + nodeOperations: { + terminal: false, + childNode: false, + childPipeline: false, + childGraph: false, + deleteNode: false, + }, +}; + +// Create a slice +const pluginSlice = createSlice({ + name: "plugin", + initialState, + reducers: { + getParams(_state, _action: PayloadAction) { + // This action might be redundant if parameters are fetched in another way + }, + getParamsSuccess( + state, + action: PayloadAction<{ + required: PluginParameter[]; + dropdown: PluginParameter[]; + }>, + ) { + state.parameters.required = action.payload.required; + state.parameters.dropdown = action.payload.dropdown; + }, + getComputeEnv(_state, _action: PayloadAction) { + // This action might be redundant if computeEnv is fetched in another way + }, + getComputeEnvSuccess(state, action: PayloadAction) { + state.computeEnv = action.payload; + }, + getComputeEnvError(state, action: PayloadAction) { + state.resourceError = action.payload; + }, + getNodeOperations(state, action: PayloadAction) { + const key = action.payload; + if (key in state.nodeOperations) { + state.nodeOperations[key] = !state.nodeOperations[key]; + } + }, + }, +}); + +// Export the actions +export const { + getParams, + getParamsSuccess, + getComputeEnv, + getComputeEnvSuccess, + getComputeEnvError, + getNodeOperations, +} = pluginSlice.actions; + +// Export the reducer +export default pluginSlice.reducer; diff --git a/src/store/plugin/reducer.ts b/src/store/plugin/reducer.ts deleted file mode 100644 index dc2dba2e0..000000000 --- a/src/store/plugin/reducer.ts +++ /dev/null @@ -1,55 +0,0 @@ -import { produce } from "immer"; -import type { Reducer } from "redux"; -import { PluginActionTypes, type IPluginState } from "./types"; - -// Type-safe initialState -const initialState: IPluginState = { - parameters: { - dropdown: [], - required: [], - }, - computeEnv: undefined, - resourceError: "", - nodeOperations: { - terminal: false, - childNode: false, - childPipeline: false, - childGraph: false, - deleteNode: false, - }, -}; - -const reducer: Reducer = produce( - (draft: IPluginState, action: typeof PluginActionTypes) => { - switch (action.type) { - case PluginActionTypes.GET_NODE_OPERATIONS: { - draft.nodeOperations[action.payload] = - !draft.nodeOperations[action.payload]; - break; - } - - case PluginActionTypes.GET_PARAMS_SUCCESS: { - draft.parameters.required = action.payload.required; - draft.parameters.dropdown = action.payload.dropdown; - break; - } - - case PluginActionTypes.GET_COMPUTE_ENV_SUCCESS: { - draft.computeEnv = action.payload; - break; - } - - case PluginActionTypes.GET_RESOURCE_ERROR: { - draft.resourceError = action.payload; - break; - } - - default: { - return draft; - } - } - }, - initialState, -); - -export { reducer as pluginReducer }; diff --git a/src/store/plugin/saga.ts b/src/store/plugin/saga.ts index 6818f2af5..bd5031676 100644 --- a/src/store/plugin/saga.ts +++ b/src/store/plugin/saga.ts @@ -1,13 +1,13 @@ import { all, fork, put, takeEvery } from "redux-saga/effects"; import type { IActionTypeParam } from "../../api/model"; -import { PluginActionTypes } from "./types"; import type { PluginParameter } from "@fnndsc/chrisapi"; -import { catchError, fetchResource } from "../../api/common"; +import { fetchResource } from "../../api/common"; import { getComputeEnvError, getComputeEnvSuccess, getParamsSuccess, -} from "./actions"; +} from "./pluginSlice"; +import { getParams } from "./pluginSlice"; // ------------------------------------------------------------------------ // Description: Get Plugin Descendants, files and parameters on change @@ -56,7 +56,7 @@ function* handleGetParams(action: IActionTypeParam) { } } function* watchGetParams() { - yield takeEvery(PluginActionTypes.GET_PARAMS, handleGetParams); + yield takeEvery(getParams.type, handleGetParams); } // ------------------------------------------------------------------------ diff --git a/src/store/plugin/types.ts b/src/store/plugin/types.ts deleted file mode 100644 index 7d45948f8..000000000 --- a/src/store/plugin/types.ts +++ /dev/null @@ -1,29 +0,0 @@ -/* - * File: plugin/types.ts - * Description: Holds types and constants for managing Chris API plugin calls - * Author: ChRIS UI - * Notes: . - */ -import keyMirror from "keymirror"; -import type { PluginParameter } from "@fnndsc/chrisapi"; - -export interface IPluginState { - parameters: { - required: PluginParameter[]; - dropdown: PluginParameter[]; - }; - computeEnv?: any[]; - resourceError: string; - nodeOperations: { - [key: string]: boolean; - }; -} - -export const PluginActionTypes = keyMirror({ - GET_PARAMS: null, - GET_PARAMS_SUCCESS: null, - GET_COMPUTE_ENV: null, - GET_COMPUTE_ENV_SUCCESS: null, - GET_RESOURCE_ERROR: null, - GET_NODE_OPERATIONS: null, -}); diff --git a/src/store/pluginInstance/actions.ts b/src/store/pluginInstance/actions.ts deleted file mode 100644 index c08f1bd0f..000000000 --- a/src/store/pluginInstance/actions.ts +++ /dev/null @@ -1,31 +0,0 @@ -import type { Feed, PluginInstance } from "@fnndsc/chrisapi"; -import { action } from "typesafe-actions"; -import { - type AddNodePayload, - type PluginInstanceObj, - PluginInstanceTypes, - type SplitNodesPayload, -} from "./types"; - -export const getSelectedPlugin = (item: PluginInstance) => - action(PluginInstanceTypes.GET_SELECTED_PLUGIN, item); -export const getSelectedD3Node = (item: any) => - action(PluginInstanceTypes.GET_SELECTED_D3_NODE, item); -export const getPluginInstancesRequest = (feed: Feed) => - action(PluginInstanceTypes.GET_PLUGIN_INSTANCES_REQUEST, feed); -export const getPluginInstancesSuccess = (items: PluginInstanceObj) => - action(PluginInstanceTypes.GET_PLUGIN_INSTANCES_SUCCESS, items); -export const getPluginInstancesError = (error: any) => - action(PluginInstanceTypes.GET_PLUGIN_INSTANCES_ERROR, error); -export const addNodeRequest = (item: AddNodePayload) => - action(PluginInstanceTypes.ADD_NODE_REQUEST, item); -export const addNodeSuccess = (pluginItem: PluginInstance) => - action(PluginInstanceTypes.ADD_NODE_SUCCESS, pluginItem); -export const setPluginTitle = (pluginItem: PluginInstance) => - action(PluginInstanceTypes.SET_PLUGIN_TITLE, pluginItem); -export const addSplitNodes = (splitNodesPayload: SplitNodesPayload) => - action(PluginInstanceTypes.ADD_SPLIT_NODES, splitNodesPayload); -export const addSplitNodesSuccess = (splitNodes: PluginInstance[]) => - action(PluginInstanceTypes.ADD_SPLIT_NODES_SUCCESS, splitNodes); -export const resetPluginInstances = () => - action(PluginInstanceTypes.RESET_PLUGIN_INSTANCES); diff --git a/src/store/pluginInstance/pluginInstanceSlice.ts b/src/store/pluginInstance/pluginInstanceSlice.ts new file mode 100644 index 000000000..85973b495 --- /dev/null +++ b/src/store/pluginInstance/pluginInstanceSlice.ts @@ -0,0 +1,90 @@ +import { createSlice, type PayloadAction } from "@reduxjs/toolkit"; +import type { + IPluginInstanceState, + AddNodePayload, + PluginInstanceObj, +} from "./types"; +import type { Feed, PluginInstance } from "@fnndsc/chrisapi"; + +// Define the initial state +const initialState: IPluginInstanceState = { + selectedPlugin: undefined, + pluginInstances: { + data: undefined, + error: "", + loading: false, + }, + selectedD3Node: undefined, +}; + +// Create a slice +const pluginInstanceSlice = createSlice({ + name: "pluginInstance", + initialState, + reducers: { + getSelectedPlugin(state, action: PayloadAction) { + state.selectedPlugin = action.payload; + }, + getSelectedD3Node(state, action: PayloadAction) { + state.selectedD3Node = action.payload; + }, + getPluginInstancesRequest(state, _action: PayloadAction) { + state.pluginInstances.loading = true; + }, + getPluginInstancesSuccess(state, action: PayloadAction) { + state.selectedPlugin = action.payload.selected; + state.pluginInstances = { + data: action.payload.pluginInstances, + error: "", + loading: false, + }; + }, + getPluginInstancesError(state, action: PayloadAction) { + state.pluginInstances = { + data: undefined, + error: action.payload, + loading: false, + }; + }, + addNodeRequest(_state, _action: PayloadAction) { + // This action might be redundant if node adding is handled in saga + }, + addNodeSuccess(state, action: PayloadAction) { + if (state.pluginInstances.data) { + state.pluginInstances.data.push(action.payload); + } else { + state.pluginInstances.data = [action.payload]; + } + }, + setPluginTitle(state, action: PayloadAction) { + if (state.pluginInstances.data) { + const foundIndex = state.pluginInstances.data.findIndex( + (instance) => instance.data.id === action.payload.data.id, + ); + if (foundIndex !== -1) { + state.pluginInstances.data[foundIndex] = action.payload; + state.selectedPlugin = action.payload; + } + } + }, + resetPluginInstances(_state) { + return initialState; + }, + }, +}); + +// Export the actions +export const { + getSelectedPlugin, + getSelectedD3Node, + getPluginInstancesRequest, + getPluginInstancesSuccess, + getPluginInstancesError, + addNodeRequest, + addNodeSuccess, + setPluginTitle, + resetPluginInstances, +} = pluginInstanceSlice.actions; + +// Export the reducer +export default pluginInstanceSlice.reducer; diff --git a/src/store/pluginInstance/reducer.ts b/src/store/pluginInstance/reducer.ts deleted file mode 100644 index eb036d822..000000000 --- a/src/store/pluginInstance/reducer.ts +++ /dev/null @@ -1,95 +0,0 @@ -import { produce } from "immer"; -import type { Reducer } from "redux"; -import { type IPluginInstanceState, PluginInstanceTypes } from "./types"; - -export const initialState: IPluginInstanceState = { - selectedPlugin: undefined, - pluginInstances: { - data: undefined, - error: "", - loading: false, - }, - selectedD3Node: undefined, -}; - -const reducer: Reducer = produce( - ( - draft: IPluginInstanceState, - action: { type: keyof typeof PluginInstanceTypes; payload?: any }, - ) => { - switch (action.type) { - case PluginInstanceTypes.GET_SELECTED_D3_NODE: { - draft.selectedD3Node = action.payload; - break; - } - - case PluginInstanceTypes.GET_PLUGIN_INSTANCES_REQUEST: { - draft.pluginInstances.loading = true; - break; - } - - case PluginInstanceTypes.GET_PLUGIN_INSTANCES_SUCCESS: { - draft.selectedPlugin = action.payload.selected; - draft.pluginInstances = { - data: action.payload.pluginInstances, - error: "", - loading: false, - }; - break; - } - - case PluginInstanceTypes.GET_PLUGIN_INSTANCES_ERROR: { - draft.pluginInstances = { - data: undefined, - error: action.payload, - loading: false, - }; - break; - } - - case PluginInstanceTypes.GET_SELECTED_PLUGIN: { - draft.selectedPlugin = action.payload; - break; - } - - case PluginInstanceTypes.SET_PLUGIN_TITLE: { - if (draft.pluginInstances.data) { - const foundIndex = draft.pluginInstances.data.findIndex( - (instance) => instance.data.id === action.payload.data.id, - ); - if (foundIndex !== -1) { - draft.pluginInstances.data[foundIndex] = action.payload; - draft.selectedPlugin = action.payload; - } - } - break; - } - - case PluginInstanceTypes.ADD_NODE_SUCCESS: { - if (draft.pluginInstances.data) { - draft.pluginInstances.data.push(action.payload); - } else { - draft.pluginInstances.data = [action.payload]; - } - break; - } - - case PluginInstanceTypes.ADD_SPLIT_NODES_SUCCESS: { - if (draft.pluginInstances.data) { - draft.pluginInstances.data.push(...action.payload); - } - break; - } - - case PluginInstanceTypes.RESET_PLUGIN_INSTANCES: { - return initialState; - } - - default: - return draft; // Ensure draft is returned in default case - } - }, - initialState, -); - -export { reducer as pluginInstanceReducer }; diff --git a/src/store/pluginInstance/saga.ts b/src/store/pluginInstance/saga.ts index f7ad01e53..533a3fb11 100644 --- a/src/store/pluginInstance/saga.ts +++ b/src/store/pluginInstance/saga.ts @@ -2,15 +2,15 @@ import type { Feed, PluginInstance } from "@fnndsc/chrisapi"; import { all, fork, put, takeEvery } from "@redux-saga/core/effects"; import { catchError, fetchResource } from "../../api/common"; import type { IActionTypeParam } from "../../api/model"; -import { getPluginInstanceStatusRequest } from "../resources/actions"; +import { getPluginInstanceStatusRequest } from "../resources/resourceSlice"; import { + addNodeRequest, addNodeSuccess, - addSplitNodesSuccess, getPluginInstancesError, + getPluginInstancesRequest, getPluginInstancesSuccess, getSelectedPlugin, -} from "./actions"; -import { PluginInstanceTypes } from "./types"; +} from "./pluginInstanceSlice"; function* setPluginInstances(feed: Feed) { try { @@ -34,7 +34,7 @@ function* setPluginInstances(feed: Feed) { put(getPluginInstanceStatusRequest(pluginInstanceObj)), ]); } catch (error: any) { - const errObj = catchError(error); + const errObj = catchError(error).error_message; yield put(getPluginInstancesError(errObj)); } } @@ -59,46 +59,18 @@ function* handleAddNode(action: IActionTypeParam) { } } -function* handleSplitNode(action: IActionTypeParam) { - const items: PluginInstance[] = action.payload.nodes; - const splitNodes: PluginInstance[] = action.payload.splitNodes; - const selected: PluginInstance = action.payload.selectedPlugin; - - const newList: PluginInstance[] = [...items, ...splitNodes]; - yield all([ - put(addSplitNodesSuccess(splitNodes)), - put( - getPluginInstanceStatusRequest({ - selected, - pluginInstances: newList, - }), - ), - ]); -} - // ------------------------------------------------------------------------ // Description: Delete a node // ------------------------------------------------------------------------ function* watchGetPluginInstanceRequest() { - yield takeEvery( - PluginInstanceTypes.GET_PLUGIN_INSTANCES_REQUEST, - handleGetPluginInstances, - ); + yield takeEvery(getPluginInstancesRequest.type, handleGetPluginInstances); } function* watchAddNode() { - yield takeEvery(PluginInstanceTypes.ADD_NODE_REQUEST, handleAddNode); -} - -function* watchAddSplitNode() { - yield takeEvery(PluginInstanceTypes.ADD_SPLIT_NODES, handleSplitNode); + yield takeEvery(addNodeRequest.type, handleAddNode); } export function* pluginInstanceSaga() { - yield all([ - fork(watchGetPluginInstanceRequest), - fork(watchAddNode), - fork(watchAddSplitNode), - ]); + yield all([fork(watchGetPluginInstanceRequest), fork(watchAddNode)]); } diff --git a/src/store/pluginInstance/types.ts b/src/store/pluginInstance/types.ts index b1b714339..170a76a73 100644 --- a/src/store/pluginInstance/types.ts +++ b/src/store/pluginInstance/types.ts @@ -5,7 +5,6 @@ * */ -import keyMirror from "keymirror"; import type { PluginInstance } from "@fnndsc/chrisapi"; export interface PluginInstanceObj { @@ -35,20 +34,3 @@ export interface IPluginInstanceState { selectedPlugin?: PluginInstance; selectedD3Node?: any; } - -export const PluginInstanceTypes = keyMirror({ - GET_SELECTED_D3_NODE: null, - GET_SELECTED_PLUGIN: null, - GET_PLUGIN_INSTANCES_REQUEST: null, - GET_PLUGIN_INSTANCES_SUCCESS: null, - GET_PLUGIN_INSTANCES_ERROR: null, - ADD_NODE_REQUEST: null, - ADD_NODE_SUCCESS: null, - SET_PLUGIN_TITLE: null, - SWITCH_TREE_MODE: null, - ADD_TS_NODE: null, - DELETE_TS_NODE: null, - ADD_SPLIT_NODES: null, - ADD_SPLIT_NODES_SUCCESS: null, - RESET_PLUGIN_INSTANCES: null, -}); diff --git a/src/store/resources/actions.ts b/src/store/resources/actions.ts deleted file mode 100644 index 1ff817542..000000000 --- a/src/store/resources/actions.ts +++ /dev/null @@ -1,38 +0,0 @@ -import { action } from "typesafe-actions"; -import { - ResourceTypes, - type PluginInstanceObj, - type DestroyActiveResources, -} from "./types"; -import type { PluginInstance } from "@fnndsc/chrisapi"; - -export const getPluginInstanceResources = (pluginInstances: PluginInstance[]) => - action(ResourceTypes.GET_PLUGIN_INSTANCE_RESOURCE_REQUEST, pluginInstances); -export const getPluginInstanceResourceSuccess = (resource: any) => - action(ResourceTypes.GET_PLUGIN_INSTANCE_RESOURCE_SUCCESS, resource); -export const stopFetchingPluginResources = (id: number) => - action(ResourceTypes.STOP_FETCHING_PLUGIN_RESOURCES, id); - -export const getPluginInstanceStatusRequest = (items: PluginInstanceObj) => - action(ResourceTypes.GET_PLUGIN_STATUS_REQUEST, items); -export const getPluginInstanceStatusSuccess = (statusPayload: { - selected: PluginInstance; - status: string; -}) => action(ResourceTypes.GET_PLUGIN_STATUS_SUCCESS, statusPayload); -export const stopFetchingStatusResources = (id: number) => - action(ResourceTypes.STOP_FETCHING_STATUS_RESOURCES, id); - -export const getPluginFilesRequest = (payload: { id: number; path: string }) => - action(ResourceTypes.GET_PLUGIN_FILES_REQUEST, payload); -export const getPluginFilesSuccess = (filesPayload: { - id: string; - path: string; -}) => action(ResourceTypes.GET_PLUGIN_FILES_SUCCESS, filesPayload); -export const getPluginFilesError = (payload: { id: number; error: any }) => - action(ResourceTypes.GET_PLUGIN_FILES_ERROR, payload); - -export const resetActiveResources = (data: DestroyActiveResources) => - action(ResourceTypes.RESET_ACTIVE_RESOURCES, data); - -export const setCurrentUrl = (url: string) => - action(ResourceTypes.SET_CURRENT_URL, url); diff --git a/src/store/resources/reducer.ts b/src/store/resources/reducer.ts deleted file mode 100644 index 253b33c56..000000000 --- a/src/store/resources/reducer.ts +++ /dev/null @@ -1,82 +0,0 @@ -import type { Reducer } from "redux"; -import { produce } from "immer"; -import { type IResourceState, ResourceTypes } from "./types"; -import { getStatusLabels } from "./utils"; - -export const initialState: IResourceState = { - pluginInstanceStatus: {}, - pluginInstanceResource: {}, - pluginFiles: {}, - url: "", - loading: false, -}; - -const reducer: Reducer = produce( - (draft: IResourceState, action: typeof ResourceTypes) => { - switch (action.type) { - case ResourceTypes.GET_PLUGIN_STATUS_SUCCESS: { - const { selected, status } = action.payload; - draft.pluginInstanceStatus[selected.data.id] = { status }; - break; - } - - case ResourceTypes.GET_PLUGIN_FILES_REQUEST: { - draft.loading = true; - break; - } - - case ResourceTypes.GET_PLUGIN_INSTANCE_RESOURCE_SUCCESS: { - const { id, pluginStatus, pluginLog, pluginDetails, previousStatus } = - action.payload; - const pluginStatusLabels = getStatusLabels( - pluginStatus, - pluginDetails, - previousStatus, - ); - draft.pluginInstanceResource[id] = { - pluginStatus: pluginStatusLabels, - pluginLog, - }; - break; - } - - case ResourceTypes.GET_PLUGIN_FILES_SUCCESS: { - const { id, folderFiles, linkFiles, children, path } = action.payload; - draft.loading = false; - draft.pluginFiles[id] = { - folderFiles, - children, - linkFiles, - error: "", - path, - }; - break; - } - - case ResourceTypes.GET_PLUGIN_FILES_ERROR: { - const { id, error } = action.payload; - draft.loading = false; - draft.pluginFiles[id] = { - ...draft.pluginFiles[id], - error, - }; - break; - } - - case ResourceTypes.RESET_ACTIVE_RESOURCES: { - return initialState; - } - - case ResourceTypes.SET_CURRENT_URL: { - draft.url = action.payload; - break; - } - - default: - return draft; - } - }, - initialState, -); - -export { reducer as resourceReducer }; diff --git a/src/store/resources/resourceSlice.ts b/src/store/resources/resourceSlice.ts new file mode 100644 index 000000000..1af98709e --- /dev/null +++ b/src/store/resources/resourceSlice.ts @@ -0,0 +1,127 @@ +import { createSlice, type PayloadAction } from "@reduxjs/toolkit"; +import type { + IResourceState, + PluginInstanceObj, + DestroyActiveResources, +} from "./types"; +import { getStatusLabels } from "./utils"; +import type { + PluginInstance, + FileBrowserFolderFile, + FileBrowserFolderLinkFile, +} from "@fnndsc/chrisapi"; + +const initialState: IResourceState = { + pluginInstanceStatus: {}, + pluginInstanceResource: {}, + pluginFiles: {}, + url: "", + loading: false, +}; + +const resourceSlice = createSlice({ + name: "resources", + initialState, + reducers: { + getPluginInstanceResources( + _state, + _action: PayloadAction, + ) { + // No state mutation needed for this action + }, + getPluginInstanceResourceSuccess(state, action: PayloadAction) { + const { id, pluginStatus, pluginLog, pluginDetails, previousStatus } = + action.payload; + const pluginStatusLabels = getStatusLabels( + pluginStatus, + pluginDetails, + previousStatus, + ); + state.pluginInstanceResource[id] = { + pluginStatus: pluginStatusLabels, + pluginLog, + }; + }, + stopFetchingPluginResources(_state, _action: PayloadAction) { + // No state mutation needed for this action + }, + getPluginInstanceStatusRequest( + _state, + _action: PayloadAction, + ) { + // No state mutation needed for this action + }, + getPluginInstanceStatusSuccess( + state, + action: PayloadAction<{ selected: PluginInstance; status: string }>, + ) { + const { selected, status } = action.payload; + state.pluginInstanceStatus[selected.data.id] = { status }; + }, + stopFetchingStatusResources(_state, _action: PayloadAction) { + // No state mutation needed for this action + }, + getPluginFilesRequest( + state, + _action: PayloadAction<{ id: number; path: string }>, + ) { + state.loading = true; + }, + getPluginFilesSuccess( + state, + action: PayloadAction<{ + id: string; + folderFiles: FileBrowserFolderFile[]; + linkFiles: FileBrowserFolderLinkFile[]; + children: any[]; + path: string; + }>, + ) { + const { id, folderFiles, linkFiles, children, path } = action.payload; + state.loading = false; + state.pluginFiles[id] = { + folderFiles, + children, + linkFiles, + error: "", + path, + }; + }, + getPluginFilesError( + state, + action: PayloadAction<{ id: number; error: any }>, + ) { + const { id, error } = action.payload; + state.loading = false; + state.pluginFiles[id] = { + ...state.pluginFiles[id], + error, + }; + }, + resetActiveResources( + _state, + _action: PayloadAction, + ) { + return initialState; + }, + setCurrentUrl(state, action: PayloadAction) { + state.url = action.payload; + }, + }, +}); + +export const { + getPluginInstanceResources, + getPluginInstanceResourceSuccess, + stopFetchingPluginResources, + getPluginInstanceStatusRequest, + getPluginInstanceStatusSuccess, + stopFetchingStatusResources, + getPluginFilesRequest, + getPluginFilesSuccess, + getPluginFilesError, + resetActiveResources, + setCurrentUrl, +} = resourceSlice.actions; + +export default resourceSlice.reducer; diff --git a/src/store/resources/saga.ts b/src/store/resources/saga.ts index d0cffb381..e60e9bde4 100644 --- a/src/store/resources/saga.ts +++ b/src/store/resources/saga.ts @@ -9,20 +9,19 @@ import type { Task } from "redux-saga"; import ChrisAPIClient from "../../api/chrisapiclient"; import { catchError, fetchResource } from "../../api/common"; import type { IActionTypeParam } from "../../api/model"; -import { PluginInstanceTypes } from "../pluginInstance/types"; import { getPluginFilesError, + getPluginFilesRequest, getPluginFilesSuccess, getPluginInstanceResourceSuccess, getPluginInstanceStatusSuccess, + resetActiveResources, stopFetchingPluginResources, stopFetchingStatusResources, -} from "./actions"; -import { - type FetchFileResult, - type PluginStatusLabels, - ResourceTypes, -} from "./types"; + getPluginInstanceStatusRequest, +} from "./resourceSlice"; +import type { FetchFileResult, PluginStatusLabels } from "./types"; +import { getSelectedPlugin } from "../pluginInstance/pluginInstanceSlice"; export const fetchFilesFromAPath = async ( path: string, @@ -212,14 +211,14 @@ function cancelStatusPolling(task: Task) { } function* watchCancelPoll(pollTask: Task) { - yield takeEvery(ResourceTypes.STOP_FETCHING_PLUGIN_RESOURCES, () => { + yield takeEvery(stopFetchingPluginResources.type, () => { cancelPolling(pollTask); }); } function* watchStatusCancelPoll(pollTask: PollTask) { yield takeEvery( - ResourceTypes.STOP_FETCHING_STATUS_RESOURCES, + stopFetchingStatusResources.type, (action: IActionTypeParam) => { const id = action.payload; const taskToCancel = pollTask[id]; @@ -253,28 +252,19 @@ function* pollInstanceEndpoints(action: IActionTypeParam) { } function* watchGetPluginFilesRequest() { - yield takeEvery(ResourceTypes.GET_PLUGIN_FILES_REQUEST, fetchPluginFiles); + yield takeEvery(getPluginFilesRequest.type, fetchPluginFiles); } function* watchGetPluginStatusRequest() { - yield takeEvery( - ResourceTypes.GET_PLUGIN_STATUS_REQUEST, - pollInstanceEndpoints, - ); + yield takeEvery(getPluginInstanceStatusRequest.type, pollInstanceEndpoints); } function* watchResetActiveResources() { - yield takeEvery( - ResourceTypes.RESET_ACTIVE_RESOURCES, - handleResetActiveResources, - ); + yield takeEvery(resetActiveResources.type, handleResetActiveResources); } function* watchSelectedPlugin() { - yield takeEvery( - PluginInstanceTypes.GET_SELECTED_PLUGIN, - pollorCancelEndpoints, - ); + yield takeEvery(getSelectedPlugin.type, pollorCancelEndpoints); } export function* resourceSaga() { diff --git a/src/store/resources/types.ts b/src/store/resources/types.ts index 4a0c4ab84..f0f67d86f 100644 --- a/src/store/resources/types.ts +++ b/src/store/resources/types.ts @@ -4,7 +4,6 @@ * Author: ChRIS UI * Notes: Work in progres ... */ -import keyMirror from "keymirror"; import type { PluginInstance, @@ -101,17 +100,3 @@ export interface IResourceState { url: string; loading: boolean; } - -export const ResourceTypes = keyMirror({ - GET_PLUGIN_INSTANCE_RESOURCE_REQUEST: null, - GET_PLUGIN_INSTANCE_RESOURCE_SUCCESS: null, - GET_PLUGIN_STATUS_REQUEST: null, - GET_PLUGIN_STATUS_SUCCESS: null, - STOP_FETCHING_STATUS_RESOURCES: null, - STOP_FETCHING_PLUGIN_RESOURCES: null, - GET_PLUGIN_FILES_REQUEST: null, - GET_PLUGIN_FILES_SUCCESS: null, - GET_PLUGIN_FILES_ERROR: null, - RESET_ACTIVE_RESOURCES: null, - SET_CURRENT_URL: null, -}); diff --git a/src/store/root/applicationState.ts b/src/store/root/applicationState.ts index e10a9e118..e83eb9381 100644 --- a/src/store/root/applicationState.ts +++ b/src/store/root/applicationState.ts @@ -4,16 +4,14 @@ import type { ICartState } from "../cart/types"; * Description: this is where the ApplicationState and supporting interfaces comes together: * Author: ChRIS UI */ -import type { IDrawerState } from "../drawer/types"; +import type { IDrawerState } from "../drawer/drawerSlice"; import type { IExplorerState } from "../explorer/types"; import type { IFeedState } from "../feed/types"; -import type { IPluginState } from "../plugin/types"; +import type { IPluginState } from "../plugin/pluginSlice"; import type { IPluginInstanceState } from "../pluginInstance/types"; import type { IResourceState } from "../resources/types"; - -import type { IUiState } from "../ui/types"; -import type { IUserState } from "../user/types"; -import type rootReducer from "./rootReducer"; +import type { IUiState } from "../ui/uiSlice"; +import type { IUserState } from "../user/userSlice"; export interface ApplicationState { ui: IUiState; @@ -22,9 +20,9 @@ export interface ApplicationState { plugin: IPluginState; instance: IPluginInstanceState; resource: IResourceState; - drawerState: IDrawerState; + drawers: IDrawerState; explorer: IExplorerState; cart: ICartState; } -export type RootState = ReturnType; +export type RootState = ApplicationState; diff --git a/src/store/root/constants.ts b/src/store/root/constants.ts deleted file mode 100644 index f7a26e875..000000000 --- a/src/store/root/constants.ts +++ /dev/null @@ -1,11 +0,0 @@ -/* - * File: constants.ts - * Description: This is where the constant files to hold all global action types - * Author: ChRIS UI - */ - -import keyMirror from "keymirror"; - -export const ActionTypes = keyMirror({ - INIT_STORE: null, -}); diff --git a/src/store/root/rootReducer.ts b/src/store/root/rootReducer.ts deleted file mode 100644 index 0393caf0e..000000000 --- a/src/store/root/rootReducer.ts +++ /dev/null @@ -1,30 +0,0 @@ -/* - * File: rootReducer.ts - * Description: this is where the Reducers comes together - * Author: ChRIS UI - */ -import { combineReducers } from "redux"; - -import { userReducer } from "../user/reducer"; -import { uiReducer } from "../ui/reducer"; -import { feedsReducer } from "../feed/reducer"; -import { pluginReducer } from "../plugin/reducer"; -import { pluginInstanceReducer } from "../pluginInstance/reducer"; -import { resourceReducer } from "../resources/reducer"; -import { drawerReducer } from "../drawer/reducer"; -import { explorerReducer } from "../explorer/reducer"; -import { cartReducer } from "../cart/reducer"; - -const rootReducer = combineReducers({ - ui: uiReducer, - feed: feedsReducer, - user: userReducer, - plugin: pluginReducer, - explorer: explorerReducer, - instance: pluginInstanceReducer, - resource: resourceReducer, - drawers: drawerReducer, - cart: cartReducer, -}); - -export default rootReducer; diff --git a/src/store/ui/actions.ts b/src/store/ui/actions.ts deleted file mode 100644 index b84738488..000000000 --- a/src/store/ui/actions.ts +++ /dev/null @@ -1,14 +0,0 @@ -import { action } from "typesafe-actions"; -import { UiActionTypes } from "./types"; - -// Toggle menus, sidebar and nav items -export const onDropdownSelect = (isOpened: boolean) => - action(UiActionTypes.TOGGLE_TOOLBAR_DROPDOWN, isOpened); -export const onSidebarToggle = (isOpened: boolean) => - action(UiActionTypes.TOGGLE_SIDEBAR, isOpened); - -// Set active sidebar item and group -export const setIsNavOpen = (isOpened: boolean) => - action(UiActionTypes.TOGGLE_NAV, isOpened); -export const setSidebarActive = (active: { activeItem: string }) => - action(UiActionTypes.SET_SIDEBAR_ACTIVE_ITEM, active); diff --git a/src/store/ui/reducer.ts b/src/store/ui/reducer.ts deleted file mode 100644 index 3b140ee35..000000000 --- a/src/store/ui/reducer.ts +++ /dev/null @@ -1,47 +0,0 @@ -import { produce } from "immer"; -import type { Reducer } from "redux"; -import { UserActionTypes } from "../user/types"; -import { UiActionTypes, type IUiState } from "./types"; - -// Type-safe initialState -const initialState: IUiState = { - loading: false, - progress: 0, - isDropdownOpen: false, - sidebarActiveItem: "overview", - isNavOpen: true, -}; - -const reducer: Reducer = produce( - (draft: IUiState, action) => { - switch (action.type) { - case UiActionTypes.TOGGLE_TOOLBAR_DROPDOWN: { - draft.isDropdownOpen = action.payload; - break; - } - - case UiActionTypes.TOGGLE_NAV: { - draft.isNavOpen = action.payload; - break; - } - - case UiActionTypes.SET_SIDEBAR_ACTIVE_ITEM: { - draft.sidebarActiveItem = action.payload.activeItem; - break; - } - - case UserActionTypes.LOGOUT_USER: { - draft.isDropdownOpen = false; - draft.sidebarActiveItem = "overview"; - break; - } - - default: { - return draft; - } - } - }, - initialState, -); - -export { reducer as uiReducer }; diff --git a/src/store/ui/types.ts b/src/store/ui/types.ts deleted file mode 100644 index a88c6757c..000000000 --- a/src/store/ui/types.ts +++ /dev/null @@ -1,25 +0,0 @@ -/* - * File: ui/types.ts - * Description: Holds types and constants for managing global UI states - * Author: ChRIS UI - */ - -import keyMirror from "keymirror"; - -// Description: state for UI Manager -export interface IUiState { - loading?: boolean; - progress?: number; - isDropdownOpen?: boolean; - isNavOpen?: boolean; - sidebarActiveItem?: string; -} - -export const UiActionTypes = keyMirror({ - TOGGLE_MOBILE_VIEW: null, - TOGGLE_NAV: null, - TOGGLE_MOBILE_NAV: null, - TOGGLE_TOOLBAR_DROPDOWN: null, - TOGGLE_SIDEBAR: null, - SET_SIDEBAR_ACTIVE_ITEM: null, -}); diff --git a/src/store/ui/uiSlice.ts b/src/store/ui/uiSlice.ts new file mode 100644 index 000000000..7db31f5eb --- /dev/null +++ b/src/store/ui/uiSlice.ts @@ -0,0 +1,46 @@ +import { createSlice, type PayloadAction } from "@reduxjs/toolkit"; + +// Description: state for UI Manager +export interface IUiState { + loading?: boolean; + progress?: number; + isDropdownOpen?: boolean; + isNavOpen?: boolean; + sidebarActiveItem?: string; +} + +const initialState: IUiState = { + loading: false, + progress: 0, + isDropdownOpen: false, + sidebarActiveItem: "overview", + isNavOpen: true, +}; + +const uiSlice = createSlice({ + name: "ui", + initialState, + reducers: { + onSidebarToggle(state, action: PayloadAction) { + state.isDropdownOpen = action.payload; + }, + setIsNavOpen(state, action: PayloadAction) { + state.isNavOpen = action.payload; + }, + setSidebarActive(state, action: PayloadAction<{ activeItem: string }>) { + state.sidebarActiveItem = action.payload.activeItem; + }, + onDropdownSelect(state, action: PayloadAction) { + state.isDropdownOpen = action.payload; + }, + }, +}); + +export const { + onSidebarToggle, + setIsNavOpen, + setSidebarActive, + onDropdownSelect, +} = uiSlice.actions; + +export default uiSlice.reducer; diff --git a/src/store/user/actions.ts b/src/store/user/actions.ts deleted file mode 100644 index b1b0bc3ca..000000000 --- a/src/store/user/actions.ts +++ /dev/null @@ -1,14 +0,0 @@ -import { action } from "typesafe-actions"; -import { UserActionTypes } from "./types"; - -export const setAuthTokenSuccess = (auth: { - token: string; - username: string; - isStaff: boolean; -}) => action(UserActionTypes.SET_TOKEN_SUCCESS, auth); // NOTE: To be done: Save user token to cookie or session -export const setUserLogout = (username: string) => - action(UserActionTypes.LOGOUT_USER, username); - -export const setLogoutSuccess = () => - action(UserActionTypes.SET_LOGOUT_USER_SUCCESS); -export const setAuthError = () => action(UserActionTypes.SET_TOKEN_ERROR); diff --git a/src/store/user/reducer.ts b/src/store/user/reducer.ts deleted file mode 100644 index 276c0823a..000000000 --- a/src/store/user/reducer.ts +++ /dev/null @@ -1,51 +0,0 @@ -import { produce } from "immer"; -import { Cookies } from "react-cookie"; -import type { Reducer } from "redux"; -import { type IUserState, UserActionTypes } from "./types"; - -const cookie = new Cookies(); -const user = cookie.get("username"); -const token = cookie.get(`${user}_token`); -const isStaff = cookie.get("isStaff"); - -// Type-safe initialState -const initialState: IUserState = { - username: user, - token: token, - isRememberMe: false, - isLoggedIn: !!token, - isStaff: !!isStaff, -}; - -const reducer: Reducer = produce( - (draft: IUserState, action) => { - switch (action.type) { - case UserActionTypes.SET_TOKEN_SUCCESS: { - draft.username = action.payload.username; - draft.token = action.payload.token; - draft.isLoggedIn = true; - draft.isStaff = action.payload.isStaff; - break; - } - case UserActionTypes.SET_TOKEN_ERROR: { - draft.username = null; - draft.token = null; - draft.isLoggedIn = false; - draft.isStaff = false; - break; - } - case UserActionTypes.SET_LOGOUT_USER_SUCCESS: { - draft.username = null; - draft.token = null; - draft.isLoggedIn = false; - draft.isStaff = false; - break; - } - default: - return draft; - } - }, - initialState, -); - -export { reducer as userReducer }; diff --git a/src/store/user/types.ts b/src/store/user/types.ts deleted file mode 100644 index 0e57ef249..000000000 --- a/src/store/user/types.ts +++ /dev/null @@ -1,28 +0,0 @@ -/* - * File: message/types.ts - * Description: Holds types and constants for managing Chris API feed calls - * Author: ChRIS UI - * Notes: Work in progres ... - */ -import keyMirror from "keymirror"; - -// Description state for main user items[] and item -export interface IUserState { - username?: string | null; - password?: string; - email?: string; - token?: string | null; - isRememberMe?: boolean; - isLoggedIn?: boolean; - isStaff?: boolean; -} - -export const UserActionTypes = keyMirror({ - SET_TOKEN: null, // before request - SET_TOKEN_ERROR: null, // request failed - SET_TOKEN_SUCCESS: null, // request is successful - LOGOUT_USER: null, - SET_LOGOUT_USER_SUCCESS: null, - GET_AUTH_TOKEN: null, - GET_AUTH_TOKEN_SUCCESS: null, -}); diff --git a/src/store/user/userSlice.ts b/src/store/user/userSlice.ts new file mode 100644 index 000000000..46429df8b --- /dev/null +++ b/src/store/user/userSlice.ts @@ -0,0 +1,72 @@ +import { createSlice, type PayloadAction } from "@reduxjs/toolkit"; +import { Cookies } from "react-cookie"; + +export interface IUserState { + username?: string | null; + password?: string; + email?: string; + token?: string | null; + isRememberMe?: boolean; + isLoggedIn?: boolean; + isStaff?: boolean; +} + +const cookie = new Cookies(); +const user = cookie.get("username"); +const token = cookie.get(`${user}_token`); +const isStaff = cookie.get("isStaff"); + +const initialState: IUserState = { + username: user, + token: token, + isRememberMe: false, + isLoggedIn: !!token, + isStaff: !!isStaff, +}; + +const userSlice = createSlice({ + name: "user", + initialState, + reducers: { + setAuthTokenSuccess: ( + state, + action: PayloadAction<{ + token: string; + username: string; + isStaff: boolean; + }>, + ) => { + state.username = action.payload.username; + state.token = action.payload.token; + state.isLoggedIn = true; + state.isStaff = action.payload.isStaff; + }, + setUserLogout: (state) => { + state.username = null; + state.token = null; + state.isLoggedIn = false; + state.isStaff = false; + }, + setLogoutSuccess: (state) => { + state.username = null; + state.token = null; + state.isLoggedIn = false; + state.isStaff = false; + }, + setAuthError: (state) => { + state.username = null; + state.token = null; + state.isLoggedIn = false; + state.isStaff = false; + }, + }, +}); + +export const { + setAuthTokenSuccess, + setUserLogout, + setLogoutSuccess, + setAuthError, +} = userSlice.actions; + +export default userSlice.reducer; From 9b1ff2a24c0c8d0cc9580a73d5795acaab0472d3 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Tue, 13 Aug 2024 15:39:59 -0400 Subject: [PATCH 104/337] feat: Minor cleanup --- package-lock.json | 28 ++------ src/components/AddNode/GuidedConfig.tsx | 15 +++-- src/components/AddNode/types/index.ts | 20 +----- src/store/configureStore.ts | 2 +- src/store/hooks.ts | 2 +- src/store/plugin/pluginSlice.ts | 90 ++++++++++++++++--------- src/store/plugin/saga.ts | 70 ------------------- src/store/root/rootSaga.ts | 8 +-- 8 files changed, 75 insertions(+), 160 deletions(-) delete mode 100644 src/store/plugin/saga.ts diff --git a/package-lock.json b/package-lock.json index 442a5f930..a3623b095 100644 --- a/package-lock.json +++ b/package-lock.json @@ -2949,7 +2949,6 @@ "version": "3.1.0", "resolved": "https://registry.npmjs.org/aggregate-error/-/aggregate-error-3.1.0.tgz", "integrity": "sha512-4I7Td01quW/RpocfNayFdFVk1qSuoh0E7JrbRJ16nH01HhKFQ88INq9Sd+nd72zqRySlr9BmDA8xlEJ6vJMrYA==", - "dev": true, "license": "MIT", "dependencies": { "clean-stack": "^2.0.0", @@ -3100,7 +3099,6 @@ "version": "1.0.0", "resolved": "https://registry.npmjs.org/archy/-/archy-1.0.0.tgz", "integrity": "sha512-Xg+9RwCg/0p32teKdGMPTPnVXKD0w3DfHnFTficozsAgsvq2XenPJq/MYpzzQ/v8zrOyJn6Ds39VA4JIDwFfqw==", - "dev": true, "license": "MIT" }, "node_modules/argparse": { @@ -3178,9 +3176,9 @@ } }, "node_modules/axios": { - "version": "1.7.3", - "resolved": "https://registry.npmjs.org/axios/-/axios-1.7.3.tgz", - "integrity": "sha512-Ar7ND9pU99eJ9GpoGQKhKf58GpUOgnzuaB7ueNQ5BMi0p+LZ5oaEnfF999fAArcTIBwXTCHAmGcHOZJaWPq9Nw==", + "version": "1.7.4", + "resolved": "https://registry.npmjs.org/axios/-/axios-1.7.4.tgz", + "integrity": "sha512-DukmaFRnY6AzAALSH4J2M3k6PkaC+MfaAGdEERRWcC9q3/TWQwLpHR8ZRLKTdQ3aBDL64EdluRDjJqKw+BPZEw==", "license": "MIT", "dependencies": { "follow-redirects": "^1.15.6", @@ -3644,7 +3642,6 @@ "version": "2.2.0", "resolved": "https://registry.npmjs.org/clean-stack/-/clean-stack-2.2.0.tgz", "integrity": "sha512-4diC9HaTE+KRAMWhDhrGOECgWZxoevMc5TlkObMqNSsVU62PYzXZ/SMTjzyGAFF1YusgxGcSWTEXBhp0CPwQ1A==", - "dev": true, "license": "MIT", "engines": { "node": ">=6" @@ -5271,7 +5268,6 @@ "version": "4.2.11", "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.11.tgz", "integrity": "sha512-RbJ5/jmFcNNCcDV5o9eTnBLJ/HszWV0P73bc+Ff4nS/rJj+YaS6IGyiOL0VoBYX+l1Wrl3k63h/KrH+nhJ0XvQ==", - "dev": true, "license": "ISC" }, "node_modules/hammerjs": { @@ -5302,7 +5298,6 @@ "version": "4.0.0", "resolved": "https://registry.npmjs.org/has-flag/-/has-flag-4.0.0.tgz", "integrity": "sha512-EykJT/Q1KjTWctppgIAgfSO0tKVuZUjhgMr17kqTumMl6Afv3EISleU7qZUzoXDFTAHTDC4NOoG/ZxU3EvlMPQ==", - "dev": true, "license": "MIT", "engines": { "node": ">=8" @@ -5510,7 +5505,6 @@ "version": "0.1.4", "resolved": "https://registry.npmjs.org/imurmurhash/-/imurmurhash-0.1.4.tgz", "integrity": "sha512-JmXMZ6wuvDmLiHEml9ykzqO6lwFbof0GG4IkcGaENdCRDDmMVnny7s5HsIgHCbaq0w2MyPhDqkhTUgS2LU2PHA==", - "dev": true, "license": "MIT", "engines": { "node": ">=0.8.19" @@ -5520,7 +5514,6 @@ "version": "4.0.0", "resolved": "https://registry.npmjs.org/indent-string/-/indent-string-4.0.0.tgz", "integrity": "sha512-EdDDZu4A2OyIK7Lr/2zG+w5jmbuk1DVBnEwREQvBzspBJkCEbRa8GxU1lghYcaGJCnRWibjDXlq779X1/y5xwg==", - "dev": true, "license": "MIT", "engines": { "node": ">=8" @@ -5657,7 +5650,6 @@ "version": "1.0.0", "resolved": "https://registry.npmjs.org/is-typedarray/-/is-typedarray-1.0.0.tgz", "integrity": "sha512-cyA56iCMHAh5CdzjJIa4aohJyeO1YbwLi3Jc35MmRU6poroFjIGZzUzupGiRPOjgHg9TLu43xbpwXk523fMxKA==", - "dev": true, "license": "MIT" }, "node_modules/is-windows": { @@ -5688,7 +5680,6 @@ "version": "2.0.0", "resolved": "https://registry.npmjs.org/isexe/-/isexe-2.0.0.tgz", "integrity": "sha512-RHxMLp9lnKHGHRng9QFhRCMbYAcVpn69smSGcq3f36xjgVVWThj4qqLbTLlq7Ssj8B+fIQ1EuCEGI2lKsyQeIw==", - "dev": true, "license": "ISC" }, "node_modules/istanbul-lib-coverage": { @@ -9783,7 +9774,6 @@ "version": "3.0.0", "resolved": "https://registry.npmjs.org/p-map/-/p-map-3.0.0.tgz", "integrity": "sha512-d3qXVTF/s+W+CdJ5A29wywV2n8CQQYahlgz2bFiA+4eVNJbHJodPZ+/gXwPGh0bOqA+j8S+6+ckmvLGPk1QpxQ==", - "dev": true, "license": "MIT", "dependencies": { "aggregate-error": "^3.0.0" @@ -10505,9 +10495,9 @@ } }, "node_modules/rc-picker": { - "version": "4.6.12", - "resolved": "https://registry.npmjs.org/rc-picker/-/rc-picker-4.6.12.tgz", - "integrity": "sha512-wZhBf/L1JV/yCnhuVol42nBpZqxV+Nam1/tnsYm5ZWq0QvMLtX1lQEWceu3FyBESzOPEBIAZixiCnISHcbHsgw==", + "version": "4.6.13", + "resolved": "https://registry.npmjs.org/rc-picker/-/rc-picker-4.6.13.tgz", + "integrity": "sha512-yi4JWPGjm420Q8rHjZ6YNy2c5IfV+9EAzx2pewVRPOjJqfg7uifO/Z0uqxdl/h6AhBocuvRvtlyz6ehrAvTq7A==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.24.7", @@ -11569,7 +11559,6 @@ "version": "7.6.3", "resolved": "https://registry.npmjs.org/semver/-/semver-7.6.3.tgz", "integrity": "sha512-oVekP1cKtI+CTDvHWYFUcMtsK/00wmAEfyqKfNdARm8u1wNVhSgaX7A8d4UuIlUI5e84iEwOhs7ZPYRmzU9U6A==", - "dev": true, "license": "ISC", "bin": { "semver": "bin/semver.js" @@ -11671,7 +11660,6 @@ "version": "3.0.7", "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.7.tgz", "integrity": "sha512-wnD2ZE+l+SPC/uoS0vXeE9L1+0wuaMqKlfz9AMUo38JsyLSBWSFcHR1Rri62LZc12vLr1gb3jl7iwQhgwpAbGQ==", - "dev": true, "license": "ISC" }, "node_modules/sirv": { @@ -11944,7 +11932,6 @@ "version": "7.2.0", "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-7.2.0.tgz", "integrity": "sha512-qpCAvRl9stuOHveKsn7HncJRvv501qIacKzQlO/+Lwxc9+0q2wLyv4Dfvt80/DPn2pqOBsJdDiogXGR9+OvwRw==", - "dev": true, "license": "MIT", "dependencies": { "has-flag": "^4.0.0" @@ -12947,7 +12934,6 @@ "version": "2.0.2", "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz", "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==", - "dev": true, "license": "ISC", "dependencies": { "isexe": "^2.0.0" @@ -13078,7 +13064,6 @@ "version": "3.0.3", "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-3.0.3.tgz", "integrity": "sha512-AvHcyZ5JnSfq3ioSyjrBkH9yW4m7Ayk8/9My/DD9onKeu/94fwrMocemO2QAJFAlnnDN+ZDS+ZjAR5ua1/PV/Q==", - "dev": true, "license": "ISC", "dependencies": { "imurmurhash": "^0.1.4", @@ -13091,7 +13076,6 @@ "version": "3.1.5", "resolved": "https://registry.npmjs.org/typedarray-to-buffer/-/typedarray-to-buffer-3.1.5.tgz", "integrity": "sha512-zdu8XMNEDepKKR+XYOXAVPtWui0ly0NtohUscw+UmaHiAWT8hrV1rr//H6V+0DvJ3OQ19S979M0laLfX8rm82Q==", - "dev": true, "license": "MIT", "dependencies": { "is-typedarray": "^1.0.0" diff --git a/src/components/AddNode/GuidedConfig.tsx b/src/components/AddNode/GuidedConfig.tsx index 870a472ce..961ace799 100644 --- a/src/components/AddNode/GuidedConfig.tsx +++ b/src/components/AddNode/GuidedConfig.tsx @@ -27,15 +27,16 @@ import { Tooltip, } from "@patternfly/react-core"; import { useMutation } from "@tanstack/react-query"; -import { Alert, Spin } from "../Antd"; import { isEmpty } from "lodash"; import React, { useContext, useEffect, useState } from "react"; import { useDispatch } from "react-redux"; import { quote } from "shlex"; import { v4 } from "uuid"; import { catchError, fetchResource, needsQuoting } from "../../api/common"; +import type { AppDispatch } from "../../store/configureStore"; import { useTypedSelector } from "../../store/hooks"; -import { getParams } from "../../store/plugin/pluginSlice"; +import { fetchParamsAndComputeEnv } from "../../store/plugin/pluginSlice"; +import { Alert, Spin } from "../Antd"; import { ClipboardCopyFixed, ErrorAlert } from "../Common"; import ComputeEnvironments from "./ComputeEnvironment"; import RequiredParam from "./RequiredParam"; @@ -63,7 +64,7 @@ const advancedConfigList = [ const memory_limit = ["Mi", "Gi"]; const GuidedConfig = () => { - const dispatch = useDispatch(); + const dispatch = useDispatch(); const { state, dispatch: nodeDispatch } = useContext(AddNodeContext); const { parameters: params, resourceError } = useTypedSelector( (state) => state.plugin, @@ -103,11 +104,11 @@ const GuidedConfig = () => { }); // Fetch the parameters for this particular plugin to display as a form. - dispatch(getParams(plugin)); + dispatch(fetchParamsAndComputeEnv(plugin)); } } catch (e) { const error_message = catchError(e).error_message; - dispatch({ + nodeDispatch({ type: Types.SetError, payload: { error: !isEmpty(error_message) @@ -482,7 +483,7 @@ const ItalicsComponent = ({ }; const DropdownBasic = ({ plugins }: { plugins?: Plugin[] }) => { - const dispatch = useDispatch(); + const dispatch = useDispatch(); const [isopen, setIsOpen] = React.useState(false); const { state, dispatch: nodeDispatch } = useContext(AddNodeContext); const { selectedPluginFromMeta } = state; @@ -498,7 +499,7 @@ const DropdownBasic = ({ plugins }: { plugins?: Plugin[] }) => { plugin: selectedPlugin, }, }); - dispatch(getParams(selectedPlugin)); + dispatch(fetchParamsAndComputeEnv(selectedPlugin)); }; const menuItems = diff --git a/src/components/AddNode/types/index.ts b/src/components/AddNode/types/index.ts index 64f9f5045..8077f7b2e 100644 --- a/src/components/AddNode/types/index.ts +++ b/src/components/AddNode/types/index.ts @@ -4,7 +4,7 @@ import type { PluginMeta, PluginParameter, } from "@fnndsc/chrisapi"; -import type { IUserState } from "../../../store/user/types"; +import type { IUserState } from "../../../store/user/userSlice"; export interface InputIndex { [key: string]: string; @@ -53,24 +53,6 @@ export interface PluginMetaSelectState { allPlugins?: PluginMeta[]; } -export interface AddNodeProps { - selectedPlugin?: PluginInstance; - pluginInstances?: { - data?: PluginInstance[]; - error: string; - loading: boolean; - }; - params?: { - dropdown: PluginParameter[]; - required: PluginParameter[]; - }; - addNode: (item: { - pluginItem: PluginInstance; - nodes?: PluginInstance[]; - }) => void; - getParams: (plugin: Plugin) => void; -} - export interface GuidedConfigState { componentList: string[]; count: number; diff --git a/src/store/configureStore.ts b/src/store/configureStore.ts index fc745d0c4..417153e3e 100644 --- a/src/store/configureStore.ts +++ b/src/store/configureStore.ts @@ -38,7 +38,7 @@ function configureAppStore() { }, middleware: (getDefaultMiddleware) => getDefaultMiddleware({ - thunk: false, // Disabling thunk since we're using sagas + thunk: true, // Disabling thunk since we're using sagas serializableCheck: false, // Disable serializable check if necessary }).concat(sagaMiddleware), devTools: import.meta.env.NODE_ENV !== "production", diff --git a/src/store/hooks.ts b/src/store/hooks.ts index bf8419f81..a6e46ab49 100644 --- a/src/store/hooks.ts +++ b/src/store/hooks.ts @@ -1,10 +1,10 @@ import { type TypedUseSelectorHook, useSelector } from "react-redux"; import type { RootState } from "./root/applicationState"; -export const useTypedSelector: TypedUseSelectorHook = useSelector; import type { Feed, FileBrowserFolderFile } from "@fnndsc/chrisapi"; import { useMutation } from "@tanstack/react-query"; import ChrisAPIClient from "../api/chrisapiclient"; import { getFileName } from "../api/common"; +export const useTypedSelector: TypedUseSelectorHook = useSelector; export const createLinkAndDownload = (url: string, fileName: string) => { const link = document.createElement("a"); diff --git a/src/store/plugin/pluginSlice.ts b/src/store/plugin/pluginSlice.ts index a5e536fb6..3675e570b 100644 --- a/src/store/plugin/pluginSlice.ts +++ b/src/store/plugin/pluginSlice.ts @@ -1,6 +1,12 @@ -import { type PayloadAction, createSlice } from "@reduxjs/toolkit"; +import { + createAsyncThunk, + createSlice, + type PayloadAction, +} from "@reduxjs/toolkit"; import type { Plugin, PluginParameter } from "@fnndsc/chrisapi"; +import { fetchResource } from "../../api/common"; +// Define the initial state export interface IPluginState { parameters: { required: PluginParameter[]; @@ -13,7 +19,6 @@ export interface IPluginState { }; } -// Define the initial state const initialState: IPluginState = { parameters: { dropdown: [], @@ -30,33 +35,48 @@ const initialState: IPluginState = { }, }; -// Create a slice +// Create async thunk to replace the saga +export const fetchParamsAndComputeEnv = createAsyncThunk( + "plugin/fetchParamsAndComputeEnv", + async (plugin: Plugin, { rejectWithValue }) => { + try { + const fn = plugin.getPluginParameters; + const boundFn = fn.bind(plugin); + const { resource: params } = await fetchResource( + { limit: 20, offset: 0 }, + boundFn, + ); + + const computeFn = plugin.getPluginComputeResources; + const boundComputeFn = computeFn.bind(plugin); + const { resource: computeEnvs } = await fetchResource( + { limit: 20, offset: 0 }, + boundComputeFn, + ); + + const required = params.filter( + (param: PluginParameter) => param.data.optional === false, + ); + const dropdown = params.filter( + (param: PluginParameter) => param.data.optional === true, + ); + + return { required, dropdown, computeEnvs }; + } catch (error: any) { + let errorMessage = + "Unhandled error. Please reach out to @devbabymri.org to report this error"; + if (error instanceof Error) { + errorMessage = error.message; + } + return rejectWithValue(errorMessage); + } + }, +); + const pluginSlice = createSlice({ name: "plugin", initialState, reducers: { - getParams(_state, _action: PayloadAction) { - // This action might be redundant if parameters are fetched in another way - }, - getParamsSuccess( - state, - action: PayloadAction<{ - required: PluginParameter[]; - dropdown: PluginParameter[]; - }>, - ) { - state.parameters.required = action.payload.required; - state.parameters.dropdown = action.payload.dropdown; - }, - getComputeEnv(_state, _action: PayloadAction) { - // This action might be redundant if computeEnv is fetched in another way - }, - getComputeEnvSuccess(state, action: PayloadAction) { - state.computeEnv = action.payload; - }, - getComputeEnvError(state, action: PayloadAction) { - state.resourceError = action.payload; - }, getNodeOperations(state, action: PayloadAction) { const key = action.payload; if (key in state.nodeOperations) { @@ -64,17 +84,21 @@ const pluginSlice = createSlice({ } }, }, + extraReducers: (builder) => { + builder + .addCase(fetchParamsAndComputeEnv.fulfilled, (state, action) => { + state.parameters.required = action.payload.required; + state.parameters.dropdown = action.payload.dropdown; + state.computeEnv = action.payload.computeEnvs; + }) + .addCase(fetchParamsAndComputeEnv.rejected, (state, action) => { + state.resourceError = action.payload as string; + }); + }, }); // Export the actions -export const { - getParams, - getParamsSuccess, - getComputeEnv, - getComputeEnvSuccess, - getComputeEnvError, - getNodeOperations, -} = pluginSlice.actions; +export const { getNodeOperations } = pluginSlice.actions; // Export the reducer export default pluginSlice.reducer; diff --git a/src/store/plugin/saga.ts b/src/store/plugin/saga.ts deleted file mode 100644 index bd5031676..000000000 --- a/src/store/plugin/saga.ts +++ /dev/null @@ -1,70 +0,0 @@ -import { all, fork, put, takeEvery } from "redux-saga/effects"; -import type { IActionTypeParam } from "../../api/model"; -import type { PluginParameter } from "@fnndsc/chrisapi"; -import { fetchResource } from "../../api/common"; -import { - getComputeEnvError, - getComputeEnvSuccess, - getParamsSuccess, -} from "./pluginSlice"; -import { getParams } from "./pluginSlice"; - -// ------------------------------------------------------------------------ -// Description: Get Plugin Descendants, files and parameters on change -// ------------------------------------------------------------------------ - -function* handleGetParams(action: IActionTypeParam) { - // Todo: Seperate these fetch resources into seperate sagas - try { - const plugin = action.payload; - const fn = plugin.getPluginParameters; - const boundFn = fn.bind(plugin); - const { resource: params } = yield fetchResource( - { limit: 20, offset: 0 }, - boundFn, - ); - const computeFn = plugin.getPluginComputeResources; - const boundComputeFn = computeFn.bind(plugin); - const { resource: computeEnvs } = yield fetchResource( - { limit: 20, offset: 0 }, - boundComputeFn, - ); - - const required = params.filter( - (param: PluginParameter) => param.data.optional === false, - ); - const dropdown = params.filter( - (param: PluginParameter) => param.data.optional === true, - ); - - yield all([ - put( - getParamsSuccess({ - required, - dropdown, - }), - ), - put(getComputeEnvSuccess(computeEnvs)), - ]); - } catch (error: any) { - let errorMessage = - "Unhandled error. Please reach out to @devbabymri.org to report this error"; - if (error instanceof Error) { - errorMessage = error.message; - } - yield put(getComputeEnvError(errorMessage)); - } -} -function* watchGetParams() { - yield takeEvery(getParams.type, handleGetParams); -} - -// ------------------------------------------------------------------------ -// Description: Get Plugin Details: Parameters, files and others - -// ------------------------------------------------------------------------ -// We can also use `fork()` here to split our saga into multiple watchers. -// ------------------------------------------------------------------------ -export function* pluginSaga() { - yield all([fork(watchGetParams)]); -} diff --git a/src/store/root/rootSaga.ts b/src/store/root/rootSaga.ts index 4307b60e0..5e22a778d 100644 --- a/src/store/root/rootSaga.ts +++ b/src/store/root/rootSaga.ts @@ -8,16 +8,10 @@ import { all, fork } from "redux-saga/effects"; /// ADD ALL Local Sagas: -import { pluginSaga } from "../plugin/saga"; import { pluginInstanceSaga } from "../pluginInstance/saga"; import { resourceSaga } from "../resources/saga"; import { cartSaga } from "../cart/saga"; export function* rootSaga() { - yield all([ - fork(pluginSaga), - fork(pluginInstanceSaga), - fork(resourceSaga), - fork(cartSaga), - ]); + yield all([fork(pluginInstanceSaga), fork(resourceSaga), fork(cartSaga)]); } From e6af10c07bd554383771fe4e9a0905724438e029 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Tue, 13 Aug 2024 15:51:09 -0400 Subject: [PATCH 105/337] fix: Fix regression caused by the redux update --- src/components/FeedDetails/index.tsx | 56 +++++++++++++++++++++------- 1 file changed, 42 insertions(+), 14 deletions(-) diff --git a/src/components/FeedDetails/index.tsx b/src/components/FeedDetails/index.tsx index 5a61f5fb0..fc7f5cee2 100644 --- a/src/components/FeedDetails/index.tsx +++ b/src/components/FeedDetails/index.tsx @@ -25,14 +25,12 @@ const FeedDetails = () => { const dispatch = useDispatch(); const drawerState = useTypedSelector((state) => state.drawers); - const node = drawerState.node.currentlyActive === "node" ? true : false; - const note = drawerState.node.currentlyActive === "note" ? true : false; + const node = drawerState.node.currentlyActive === "node"; + const note = drawerState.node.currentlyActive === "note"; const [showNoteBadge, setShowNoteBadge] = useState(false); - const terminal = - drawerState.node.currentlyActive === "terminal" ? true : false; + const terminal = drawerState.node.currentlyActive === "terminal"; - const preview = - drawerState.preview.currentlyActive === "preview" ? true : false; + const preview = drawerState.preview.currentlyActive === "preview"; React.useEffect(() => { fetchNote(currentFeed).then((feedNote) => { @@ -116,9 +114,19 @@ const FeedDetails = () => { content={!node && terminal ? "Configuration Panel" : "Terminal"} onClick={() => { if (terminal) { - dispatch(setDrawerCurrentlyActive("node", "node")); + dispatch( + setDrawerCurrentlyActive({ + panel: "node", + currentlyActive: "node", + }), + ); } else { - dispatch(setDrawerCurrentlyActive("node", "terminal")); + dispatch( + setDrawerCurrentlyActive({ + panel: "node", + currentlyActive: "terminal", + }), + ); } }} Icon={ @@ -131,16 +139,26 @@ const FeedDetails = () => { + { if (note) { - dispatch(setDrawerCurrentlyActive("node", "node")); + dispatch( + setDrawerCurrentlyActive({ + panel: "node", + currentlyActive: "node", + }), + ); } else { - dispatch(setDrawerCurrentlyActive("node", "note")); + dispatch( + setDrawerCurrentlyActive({ + panel: "node", + currentlyActive: "note", + }), + ); } }} Icon={ @@ -166,9 +184,19 @@ const FeedDetails = () => { content={preview ? "Visualization Panel" : "Preview Panel"} onClick={() => { if (preview) { - dispatch(setDrawerCurrentlyActive("preview", "xtk")); + dispatch( + setDrawerCurrentlyActive({ + panel: "preview", + currentlyActive: "xtk", + }), + ); } else { - dispatch(setDrawerCurrentlyActive("preview", "preview")); + dispatch( + setDrawerCurrentlyActive({ + panel: "preview", + currentlyActive: "preview", + }), + ); } }} Icon={preview ? : } @@ -215,7 +243,7 @@ export const ButtonContainer = ({ drawerState, isDisabled, }: { - action: string; + action: keyof IDrawerState; dispatch: any; Icon: React.ReactNode; title: string; From c45e989cea95e11fe6c5a088355d12ca11e0d658 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 14 Aug 2024 09:30:10 -0400 Subject: [PATCH 106/337] feat: Update loading state in the feed table --- src/components/Feeds/FeedListView.tsx | 9 ++------- 1 file changed, 2 insertions(+), 7 deletions(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 2609b4d6e..85e4f2576 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -547,14 +547,9 @@ function LoadingTable() { {Array.from({ length: 15 }).map((_, index) => ( - - + + - {COLUMN_ORDER.map(({ id }) => ( - - - - ))} ))} From f0410f95a93ac85e117428fba1ada7adf6055661 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 14 Aug 2024 12:11:36 -0400 Subject: [PATCH 107/337] refactor: Update components to use redux toolkit --- package-lock.json | 60 +++++-- package.json | 2 +- src/components/AddNode/AddNode.tsx | 12 +- src/components/AddPipeline/AddPipeline.tsx | 10 +- src/components/DeleteNode/index.tsx | 6 +- src/components/FeedTree/Node.tsx | 10 +- src/components/Feeds/FeedView.tsx | 127 +++++++-------- src/components/NodeDetails/PluginLog.tsx | 2 +- src/store/configureStore.ts | 3 +- src/store/drawer/drawerSlice.ts | 11 +- .../pluginInstance/pluginInstanceSlice.ts | 150 +++++++++++++----- src/store/pluginInstance/saga.ts | 76 --------- src/store/pluginInstance/types.ts | 5 +- src/store/resources/resourceSlice.ts | 9 +- src/store/resources/saga.ts | 1 - src/store/resources/types.ts | 2 +- src/store/root/rootSaga.ts | 3 +- 17 files changed, 246 insertions(+), 243 deletions(-) delete mode 100644 src/store/pluginInstance/saga.ts diff --git a/package-lock.json b/package-lock.json index a3623b095..74876b97d 100644 --- a/package-lock.json +++ b/package-lock.json @@ -20,6 +20,7 @@ "@patternfly/react-log-viewer": "^5.2.0", "@patternfly/react-table": "^5.3.4", "@react-hook/resize-observer": "^2.0.1", + "@redux-devtools/extension": "^3.3.0", "@reduxjs/toolkit": "^2.2.7", "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", @@ -90,7 +91,6 @@ "lefthook": "^1.6.1", "nyc": "^17.0.0", "playwright": "^1.45.1", - "redux-devtools-extension": "^2.13.9", "redux-logger": "^3.0.6", "rollup-plugin-node-builtins": "^2.0.0", "vite": "^5.3.3", @@ -1894,6 +1894,37 @@ "react": ">=18" } }, + "node_modules/@redux-devtools/extension": { + "version": "3.3.0", + "resolved": "https://registry.npmjs.org/@redux-devtools/extension/-/extension-3.3.0.tgz", + "integrity": "sha512-X34S/rC8S/M1BIrkYD1mJ5f8vlH0BDqxXrs96cvxSBo4FhMdbhU+GUGsmNYov1xjSyLMHgo8NYrUG8bNX7525g==", + "license": "MIT", + "dependencies": { + "@babel/runtime": "^7.23.2", + "immutable": "^4.3.4" + }, + "peerDependencies": { + "redux": "^3.1.0 || ^4.0.0 || ^5.0.0" + } + }, + "node_modules/@redux-devtools/extension/node_modules/@babel/runtime": { + "version": "7.25.0", + "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.0.tgz", + "integrity": "sha512-7dRy4DwXwtzBrPbZflqxnvfxLF8kdZXPkhymtDeFoFqE6ldzjQFgYTtYIFARcLEYDrqfBfYcZt1WqFxRoyC9Rw==", + "license": "MIT", + "dependencies": { + "regenerator-runtime": "^0.14.0" + }, + "engines": { + "node": ">=6.9.0" + } + }, + "node_modules/@redux-devtools/extension/node_modules/immutable": { + "version": "4.3.7", + "resolved": "https://registry.npmjs.org/immutable/-/immutable-4.3.7.tgz", + "integrity": "sha512-1hqclzwYwjRDFLjcFxOM5AYkkG0rpFPpr1RLPMEuGczoS7YA8gLhy8SWXYRAA/XwfEHpfo3cw5JGioS32fnMRw==", + "license": "MIT" + }, "node_modules/@redux-saga/core": { "version": "1.3.0", "resolved": "https://registry.npmjs.org/@redux-saga/core/-/core-1.3.0.tgz", @@ -2949,6 +2980,7 @@ "version": "3.1.0", "resolved": "https://registry.npmjs.org/aggregate-error/-/aggregate-error-3.1.0.tgz", "integrity": "sha512-4I7Td01quW/RpocfNayFdFVk1qSuoh0E7JrbRJ16nH01HhKFQ88INq9Sd+nd72zqRySlr9BmDA8xlEJ6vJMrYA==", + "dev": true, "license": "MIT", "dependencies": { "clean-stack": "^2.0.0", @@ -3099,6 +3131,7 @@ "version": "1.0.0", "resolved": "https://registry.npmjs.org/archy/-/archy-1.0.0.tgz", "integrity": "sha512-Xg+9RwCg/0p32teKdGMPTPnVXKD0w3DfHnFTficozsAgsvq2XenPJq/MYpzzQ/v8zrOyJn6Ds39VA4JIDwFfqw==", + "dev": true, "license": "MIT" }, "node_modules/argparse": { @@ -3642,6 +3675,7 @@ "version": "2.2.0", "resolved": "https://registry.npmjs.org/clean-stack/-/clean-stack-2.2.0.tgz", "integrity": "sha512-4diC9HaTE+KRAMWhDhrGOECgWZxoevMc5TlkObMqNSsVU62PYzXZ/SMTjzyGAFF1YusgxGcSWTEXBhp0CPwQ1A==", + "dev": true, "license": "MIT", "engines": { "node": ">=6" @@ -5268,6 +5302,7 @@ "version": "4.2.11", "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.11.tgz", "integrity": "sha512-RbJ5/jmFcNNCcDV5o9eTnBLJ/HszWV0P73bc+Ff4nS/rJj+YaS6IGyiOL0VoBYX+l1Wrl3k63h/KrH+nhJ0XvQ==", + "dev": true, "license": "ISC" }, "node_modules/hammerjs": { @@ -5298,6 +5333,7 @@ "version": "4.0.0", "resolved": "https://registry.npmjs.org/has-flag/-/has-flag-4.0.0.tgz", "integrity": "sha512-EykJT/Q1KjTWctppgIAgfSO0tKVuZUjhgMr17kqTumMl6Afv3EISleU7qZUzoXDFTAHTDC4NOoG/ZxU3EvlMPQ==", + "dev": true, "license": "MIT", "engines": { "node": ">=8" @@ -5505,6 +5541,7 @@ "version": "0.1.4", "resolved": "https://registry.npmjs.org/imurmurhash/-/imurmurhash-0.1.4.tgz", "integrity": "sha512-JmXMZ6wuvDmLiHEml9ykzqO6lwFbof0GG4IkcGaENdCRDDmMVnny7s5HsIgHCbaq0w2MyPhDqkhTUgS2LU2PHA==", + "dev": true, "license": "MIT", "engines": { "node": ">=0.8.19" @@ -5514,6 +5551,7 @@ "version": "4.0.0", "resolved": "https://registry.npmjs.org/indent-string/-/indent-string-4.0.0.tgz", "integrity": "sha512-EdDDZu4A2OyIK7Lr/2zG+w5jmbuk1DVBnEwREQvBzspBJkCEbRa8GxU1lghYcaGJCnRWibjDXlq779X1/y5xwg==", + "dev": true, "license": "MIT", "engines": { "node": ">=8" @@ -5650,6 +5688,7 @@ "version": "1.0.0", "resolved": "https://registry.npmjs.org/is-typedarray/-/is-typedarray-1.0.0.tgz", "integrity": "sha512-cyA56iCMHAh5CdzjJIa4aohJyeO1YbwLi3Jc35MmRU6poroFjIGZzUzupGiRPOjgHg9TLu43xbpwXk523fMxKA==", + "dev": true, "license": "MIT" }, "node_modules/is-windows": { @@ -5680,6 +5719,7 @@ "version": "2.0.0", "resolved": "https://registry.npmjs.org/isexe/-/isexe-2.0.0.tgz", "integrity": "sha512-RHxMLp9lnKHGHRng9QFhRCMbYAcVpn69smSGcq3f36xjgVVWThj4qqLbTLlq7Ssj8B+fIQ1EuCEGI2lKsyQeIw==", + "dev": true, "license": "ISC" }, "node_modules/istanbul-lib-coverage": { @@ -9774,6 +9814,7 @@ "version": "3.0.0", "resolved": "https://registry.npmjs.org/p-map/-/p-map-3.0.0.tgz", "integrity": "sha512-d3qXVTF/s+W+CdJ5A29wywV2n8CQQYahlgz2bFiA+4eVNJbHJodPZ+/gXwPGh0bOqA+j8S+6+ckmvLGPk1QpxQ==", + "dev": true, "license": "MIT", "dependencies": { "aggregate-error": "^3.0.0" @@ -11230,17 +11271,6 @@ "integrity": "sha512-M9/ELqF6fy8FwmkpnF0S3YKOqMyoWJ4+CS5Efg2ct3oY9daQvd/Pc71FpGZsVsbl3Cpb+IIcjBDUnnyBdQbq4w==", "license": "MIT" }, - "node_modules/redux-devtools-extension": { - "version": "2.13.9", - "resolved": "https://registry.npmjs.org/redux-devtools-extension/-/redux-devtools-extension-2.13.9.tgz", - "integrity": "sha512-cNJ8Q/EtjhQaZ71c8I9+BPySIBVEKssbPpskBfsXqb8HJ002A3KRVHfeRzwRo6mGPqsm7XuHTqNSNeS1Khig0A==", - "deprecated": "Package moved to @redux-devtools/extension.", - "dev": true, - "license": "MIT", - "peerDependencies": { - "redux": "^3.1.0 || ^4.0.0" - } - }, "node_modules/redux-logger": { "version": "3.0.6", "resolved": "https://registry.npmjs.org/redux-logger/-/redux-logger-3.0.6.tgz", @@ -11559,6 +11589,7 @@ "version": "7.6.3", "resolved": "https://registry.npmjs.org/semver/-/semver-7.6.3.tgz", "integrity": "sha512-oVekP1cKtI+CTDvHWYFUcMtsK/00wmAEfyqKfNdARm8u1wNVhSgaX7A8d4UuIlUI5e84iEwOhs7ZPYRmzU9U6A==", + "dev": true, "license": "ISC", "bin": { "semver": "bin/semver.js" @@ -11660,6 +11691,7 @@ "version": "3.0.7", "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.7.tgz", "integrity": "sha512-wnD2ZE+l+SPC/uoS0vXeE9L1+0wuaMqKlfz9AMUo38JsyLSBWSFcHR1Rri62LZc12vLr1gb3jl7iwQhgwpAbGQ==", + "dev": true, "license": "ISC" }, "node_modules/sirv": { @@ -11932,6 +11964,7 @@ "version": "7.2.0", "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-7.2.0.tgz", "integrity": "sha512-qpCAvRl9stuOHveKsn7HncJRvv501qIacKzQlO/+Lwxc9+0q2wLyv4Dfvt80/DPn2pqOBsJdDiogXGR9+OvwRw==", + "dev": true, "license": "MIT", "dependencies": { "has-flag": "^4.0.0" @@ -12934,6 +12967,7 @@ "version": "2.0.2", "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz", "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==", + "dev": true, "license": "ISC", "dependencies": { "isexe": "^2.0.0" @@ -13064,6 +13098,7 @@ "version": "3.0.3", "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-3.0.3.tgz", "integrity": "sha512-AvHcyZ5JnSfq3ioSyjrBkH9yW4m7Ayk8/9My/DD9onKeu/94fwrMocemO2QAJFAlnnDN+ZDS+ZjAR5ua1/PV/Q==", + "dev": true, "license": "ISC", "dependencies": { "imurmurhash": "^0.1.4", @@ -13076,6 +13111,7 @@ "version": "3.1.5", "resolved": "https://registry.npmjs.org/typedarray-to-buffer/-/typedarray-to-buffer-3.1.5.tgz", "integrity": "sha512-zdu8XMNEDepKKR+XYOXAVPtWui0ly0NtohUscw+UmaHiAWT8hrV1rr//H6V+0DvJ3OQ19S979M0laLfX8rm82Q==", + "dev": true, "license": "MIT", "dependencies": { "is-typedarray": "^1.0.0" diff --git a/package.json b/package.json index a6dc357d4..4eb923dcb 100644 --- a/package.json +++ b/package.json @@ -36,6 +36,7 @@ "@patternfly/react-log-viewer": "^5.2.0", "@patternfly/react-table": "^5.3.4", "@react-hook/resize-observer": "^2.0.1", + "@redux-devtools/extension": "^3.3.0", "@reduxjs/toolkit": "^2.2.7", "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", @@ -106,7 +107,6 @@ "lefthook": "^1.6.1", "nyc": "^17.0.0", "playwright": "^1.45.1", - "redux-devtools-extension": "^2.13.9", "redux-logger": "^3.0.6", "rollup-plugin-node-builtins": "^2.0.0", "vite": "^5.3.3", diff --git a/src/components/AddNode/AddNode.tsx b/src/components/AddNode/AddNode.tsx index 6b21a4b9c..8bc9aca6b 100644 --- a/src/components/AddNode/AddNode.tsx +++ b/src/components/AddNode/AddNode.tsx @@ -7,30 +7,30 @@ import { } from "@patternfly/react-core"; import type React from "react"; import { useCallback, useContext } from "react"; -import { useDispatch, useSelector } from "react-redux"; +import { useDispatch } from "react-redux"; import { catchError } from "../../api/common"; import { useTypedSelector } from "../../store/hooks"; import { getNodeOperations } from "../../store/plugin/pluginSlice"; -import { addNodeRequest } from "../../store/pluginInstance/pluginInstanceSlice"; +import { addNode } from "../../store/pluginInstance/pluginInstanceSlice"; import type { ApplicationState } from "../../store/root/applicationState"; import { Alert } from "../Antd"; import { getRequiredObject } from "../CreateFeed/createFeedHelper"; import BasicConfiguration from "./BasicConfiguration"; import GuidedConfig from "./GuidedConfig"; import "./add-node.css"; +import type { AppDispatch } from "../../store/configureStore"; import { AddNodeContext } from "./context"; import { Types } from "./types"; const AddNode: React.FC = () => { - const dispatch = useDispatch(); - const { childNode } = useSelector( + const dispatch = useDispatch(); + const { childNode } = useTypedSelector( (state: ApplicationState) => state.plugin.nodeOperations, ); const { pluginInstances, selectedPlugin } = useTypedSelector( (state) => state.instance, ); const params = useTypedSelector((state) => state.plugin.parameters); - const { state, dispatch: nodeDispatch } = useContext(AddNodeContext); const { pluginMeta, @@ -104,7 +104,7 @@ const AddNode: React.FC = () => { await pluginInstance.post(parameterInput); const nodeList = pluginInstance.getItems(); if (nodeList) { - dispatch(addNodeRequest({ pluginItem: nodeList[0], nodes })); + dispatch(addNode({ pluginItem: nodeList[0], nodes })); toggleOpen(); } } catch (error: any) { diff --git a/src/components/AddPipeline/AddPipeline.tsx b/src/components/AddPipeline/AddPipeline.tsx index e7187b7fc..98af04a58 100644 --- a/src/components/AddPipeline/AddPipeline.tsx +++ b/src/components/AddPipeline/AddPipeline.tsx @@ -1,15 +1,15 @@ import type { PluginInstance } from "@fnndsc/chrisapi"; import { Button, Modal, ModalVariant } from "@patternfly/react-core"; import { useMutation } from "@tanstack/react-query"; -import React, { useContext, Fragment } from "react"; +import React, { Fragment, useContext } from "react"; import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../api/chrisapiclient"; import { fetchResource } from "../../api/common"; import { useTypedSelector } from "../../store/hooks"; import { getNodeOperations } from "../../store/plugin/pluginSlice"; import { - getPluginInstancesSuccess, getSelectedPlugin, + setPluginInstancesAndSelectedPlugin, } from "../../store/pluginInstance/pluginInstanceSlice"; import { getPluginInstanceStatusRequest } from "../../store/resources/resourceSlice"; import { Alert, Form, Tag } from "../Antd"; @@ -89,13 +89,11 @@ const AddPipeline = () => { selected: firstInstance, pluginInstances: completeList, }; - reactDispatch(getPluginInstancesSuccess(pluginInstanceObj)); + reactDispatch(setPluginInstancesAndSelectedPlugin(pluginInstanceObj)); reactDispatch(getPluginInstanceStatusRequest(pluginInstanceObj)); } - - // biome-ignore lint/suspicious/noExplicitAny: } catch (e: any) { - throw new Error(e.message ? e.message : e); + if (e instanceof Error) throw new Error(e.message); } } }; diff --git a/src/components/DeleteNode/index.tsx b/src/components/DeleteNode/index.tsx index fb5bbcf86..343d88f7e 100644 --- a/src/components/DeleteNode/index.tsx +++ b/src/components/DeleteNode/index.tsx @@ -7,7 +7,7 @@ import { fetchResource } from "../../api/common"; import { useTypedSelector } from "../../store/hooks"; import { getNodeOperations } from "../../store/plugin/pluginSlice"; import { - getPluginInstancesSuccess, + setPluginInstancesAndSelectedPlugin, getSelectedPlugin, } from "../../store/pluginInstance/pluginInstanceSlice"; import { getPluginInstanceStatusRequest } from "../../store/resources/resourceSlice"; @@ -55,11 +55,11 @@ const DeleteNode = () => { }; dispatch(getSelectedPlugin(selected)); - dispatch(getPluginInstancesSuccess(pluginInstanceObj)); + dispatch(setPluginInstancesAndSelectedPlugin(pluginInstanceObj)); dispatch(getPluginInstanceStatusRequest(pluginInstanceObj)); } } catch (e) { - throw e; + if (e instanceof Error) throw new Error(e.message); } } else { throw new Error("Please select a node to delete"); diff --git a/src/components/FeedTree/Node.tsx b/src/components/FeedTree/Node.tsx index 12ae95372..3fd0f3741 100644 --- a/src/components/FeedTree/Node.tsx +++ b/src/components/FeedTree/Node.tsx @@ -8,9 +8,8 @@ import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useTypedSelector } from "../../store/hooks"; import { - getPluginInstancesSuccess, - getSelectedD3Node, getSelectedPlugin, + setPluginInstancesAndSelectedPlugin, } from "../../store/pluginInstance/pluginInstanceSlice"; import { getPluginInstanceStatusRequest } from "../../store/resources/resourceSlice"; import AddNodeConnect from "../AddNode/AddNode"; @@ -183,7 +182,7 @@ const Node = (props: NodeProps) => { pluginInstances: completeList, }; - dispatch(getPluginInstancesSuccess(pluginInstanceObj)); + dispatch(setPluginInstancesAndSelectedPlugin(pluginInstanceObj)); dispatch(getPluginInstanceStatusRequest(pluginInstanceObj)); } } else { @@ -293,7 +292,6 @@ const Node = (props: NodeProps) => { const NodeMemoed = memo(Node); const NodeWrapper = (props: NodeWrapperProps) => { - const dispatch = useDispatch(); const { data, overlayScale } = props; const status = useTypedSelector((state) => { if (data.id && state.resource.pluginInstanceStatus[data.id]) { @@ -306,10 +304,6 @@ const NodeWrapper = (props: NodeWrapperProps) => { return false; }); - useEffect(() => { - if (currentId) dispatch(getSelectedD3Node(data)); - }, [currentId, data, dispatch]); - let scale: number | undefined; // undefined scale is treated as no indvidual scaling if (overlayScale === "time") { const instanceData = props.data.item?.data; diff --git a/src/components/Feeds/FeedView.tsx b/src/components/Feeds/FeedView.tsx index 12f2e6763..0ff8bc500 100644 --- a/src/components/Feeds/FeedView.tsx +++ b/src/components/Feeds/FeedView.tsx @@ -6,9 +6,12 @@ import { DrawerPanelContent, } from "@patternfly/react-core"; import { useQuery } from "@tanstack/react-query"; -import React from "react"; +import React, { useCallback, useEffect, useRef } from "react"; import { useDispatch } from "react-redux"; import { useLocation, useNavigate, useParams } from "react-router"; +import type { AppDispatch } from "../../store/configureStore"; +import type { IDrawerState } from "../../store/drawer/drawerSlice"; +import { resetDrawerState } from "../../store/drawer/drawerSlice"; import { clearSelectedFile } from "../../store/explorer/explorerSlice"; import { getFeedSuccess, @@ -17,8 +20,7 @@ import { } from "../../store/feed/feedSlice"; import { useTypedSelector } from "../../store/hooks"; import { - getPluginInstancesRequest, - getSelectedD3Node, + fetchPluginInstances, getSelectedPlugin, resetPluginInstances, } from "../../store/pluginInstance/pluginInstanceSlice"; @@ -40,31 +42,25 @@ import { handleMinimize, } from "./utilties"; -export default function FeedView() { +const FeedView: React.FC = () => { + const drawerState = useTypedSelector((state) => state.drawers); + const { currentLayout } = useTypedSelector((state) => state.feed); + const dispatch = useDispatch(); const query = useSearchQueryParams(); const type = query.get("type"); - const params = useParams(); - const dispatch = useDispatch(); const navigate = useNavigate(); const location = useLocation(); const [api, contextHolder] = notification.useNotification(); const { id } = params; - const selectedPlugin = useTypedSelector( - (state) => state.instance.selectedPlugin, - ); - const isLoggedIn = useTypedSelector((state) => state.user.isLoggedIn); - const { currentLayout } = useTypedSelector((state) => state.feed); - const pluginInstances = useTypedSelector( - (state) => state.instance.pluginInstances, + const { selectedPlugin, pluginInstances } = useTypedSelector( + (state) => state.instance, ); - const dataRef = React.useRef(); - const { data } = pluginInstances; - const drawerState = useTypedSelector((state) => state.drawers); + const dataRef = useRef(); dataRef.current = { - data, + data: pluginInstances.data, selectedPlugin, }; @@ -84,88 +80,81 @@ export default function FeedView() { enabled: type === "private" && isLoggedIn, }); - React.useEffect(() => { + useEffect(() => { if (!type || (type === "private" && !isLoggedIn)) { const redirectTo = encodeURIComponent( `${location.pathname}${location.search}`, ); navigate(`/login?redirectTo=${redirectTo}`); } - }, [type, navigate, isLoggedIn]); + }, [type, isLoggedIn, location, navigate]); - React.useEffect(() => { + useEffect(() => { if (isPrivateFeedError) { - // cube does not return a 404 error when the user fetches a - // feed with an incorrect token api.error({ message: privateFeedError.message, duration: 1.5, }); - - setTimeout(() => { + const timer = setTimeout(() => { navigate("/feeds?type=private"); }, 2500); + return () => clearTimeout(timer); } - }, [isPrivateFeedError]); + }, [isPrivateFeedError, privateFeedError, api, navigate]); - React.useEffect(() => { + useEffect(() => { const feed: Feed | undefined = privateFeed || publicFeed; if (feed) { dispatch(getFeedSuccess(feed as Feed)); - dispatch(getPluginInstancesRequest(feed)); + dispatch(fetchPluginInstances(feed)); } }, [privateFeed, publicFeed, dispatch]); - React.useEffect(() => { + useEffect(() => { + document.title = "My Analyses - CHRIS UI"; + dispatch(setSidebarActive({ activeItem: "analyses" })); + dispatch(setShowToolbar(true)); + return () => { + console.log("Unmount called"); if (dataRef.current?.selectedPlugin && dataRef.current.data) { dispatch(resetActiveResources(dataRef.current)); } - dispatch(resetFeed()); dispatch(resetPluginInstances()); + dispatch(resetFeed()); dispatch(clearSelectedFile()); + dispatch(resetDrawerState()); dispatch(setShowToolbar(false)); }; }, [dispatch]); - React.useEffect(() => { - dispatch(setShowToolbar(true)); - }, [dispatch]); - - React.useEffect(() => { - document.title = "My Analyses - ChRIS UI site"; - dispatch( - setSidebarActive({ - activeItem: "analyses", - }), - ); - }, [dispatch]); - - const onNodeClick = (node: any) => { - dispatch(clearSelectedFile()); - dispatch(getSelectedPlugin(node.item)); - dispatch(getSelectedD3Node(node)); - }; + const onNodeClick = useCallback( + (node: any) => { + dispatch(clearSelectedFile()); + dispatch(getSelectedPlugin(node.item)); + }, + [dispatch], + ); - const onNodeBrowserClick = (node: PluginInstance) => { - dispatch(clearSelectedFile()); - dispatch(getSelectedPlugin(node)); - }; + const onNodeBrowserClick = useCallback( + (node: PluginInstance) => { + dispatch(clearSelectedFile()); + dispatch(getSelectedPlugin(node)); + }, + [dispatch], + ); - const handleDrawerAction = (mode: string) => { - return ( + const handleDrawerAction = useCallback( + (mode: keyof IDrawerState) => ( { - handleMaximize(mode, dispatch); - }} - handleMinimize={() => { - handleMinimize(mode, dispatch); - }} + handleMaximize={() => handleMaximize(mode, dispatch)} + handleMinimize={() => handleMinimize(mode, dispatch)} maximized={drawerState[mode].maximized} /> - ); - }; + ), + [drawerState, dispatch], + ); const feedTreeAndGraph = ( @@ -182,17 +171,7 @@ export default function FeedView() { } > - { - handleMaximize("graph", dispatch); - }} - handleMinimize={() => { - handleMinimize("graph", dispatch); - }} - maximized={drawerState.graph.maximized} - /> - + {handleDrawerAction("graph")} {!currentLayout ? ( @@ -234,4 +213,6 @@ export default function FeedView() { ); -} +}; + +export default React.memo(FeedView); diff --git a/src/components/NodeDetails/PluginLog.tsx b/src/components/NodeDetails/PluginLog.tsx index 6f94ce847..0ebd5a61e 100644 --- a/src/components/NodeDetails/PluginLog.tsx +++ b/src/components/NodeDetails/PluginLog.tsx @@ -1,5 +1,5 @@ import React from "react"; -import { NodeDetailsProps } from "../../store/resources/types"; +import type { NodeDetailsProps } from "../../store/resources/types"; import LogTerminal from "./LogTerminal"; import { isEmpty } from "lodash"; diff --git a/src/store/configureStore.ts b/src/store/configureStore.ts index 417153e3e..6a9061728 100644 --- a/src/store/configureStore.ts +++ b/src/store/configureStore.ts @@ -5,6 +5,7 @@ * Author: ChRIS UI */ import { configureStore } from "@reduxjs/toolkit"; +import logger from "redux-logger"; import createSagaMiddleware from "redux-saga"; import cartReducer from "./cart/cartSlice"; import drawerReducer from "./drawer/drawerSlice"; @@ -40,7 +41,7 @@ function configureAppStore() { getDefaultMiddleware({ thunk: true, // Disabling thunk since we're using sagas serializableCheck: false, // Disable serializable check if necessary - }).concat(sagaMiddleware), + }).concat(logger, sagaMiddleware), devTools: import.meta.env.NODE_ENV !== "production", }); diff --git a/src/store/drawer/drawerSlice.ts b/src/store/drawer/drawerSlice.ts index a38991b59..bbf51e9fe 100644 --- a/src/store/drawer/drawerSlice.ts +++ b/src/store/drawer/drawerSlice.ts @@ -84,11 +84,18 @@ const drawerSlice = createSlice({ const { panel, currentlyActive } = action.payload; state[panel].currentlyActive = currentlyActive; }, + resetDrawerState: () => { + return initialState; + }, }, }); -export const { setDrawerState, setFilePreviewPanel, setDrawerCurrentlyActive } = - drawerSlice.actions; +export const { + setDrawerState, + setFilePreviewPanel, + setDrawerCurrentlyActive, + resetDrawerState, +} = drawerSlice.actions; export default drawerSlice.reducer; export const getMaximizedObject = ( diff --git a/src/store/pluginInstance/pluginInstanceSlice.ts b/src/store/pluginInstance/pluginInstanceSlice.ts index 85973b495..9e5998cf0 100644 --- a/src/store/pluginInstance/pluginInstanceSlice.ts +++ b/src/store/pluginInstance/pluginInstanceSlice.ts @@ -1,22 +1,80 @@ -import { createSlice, type PayloadAction } from "@reduxjs/toolkit"; +import { + createSlice, + createAsyncThunk, + type PayloadAction, +} from "@reduxjs/toolkit"; +import type { Feed, PluginInstance } from "@fnndsc/chrisapi"; +import { catchError, fetchResource } from "../../api/common"; import type { IPluginInstanceState, AddNodePayload, PluginInstanceObj, } from "./types"; -import type { Feed, PluginInstance } from "@fnndsc/chrisapi"; +import { getPluginInstanceStatusRequest } from "../resources/resourceSlice"; // Define the initial state const initialState: IPluginInstanceState = { selectedPlugin: undefined, pluginInstances: { - data: undefined, + data: [], error: "", loading: false, }, - selectedD3Node: undefined, }; +// Async thunk for fetching plugin instances +export const fetchPluginInstances = createAsyncThunk< + PluginInstanceObj, + Feed, + { rejectValue: string } +>( + "pluginInstance/fetchPluginInstances", + async (feed, { dispatch, rejectWithValue }) => { + try { + const params = { limit: 15, offset: 0 }; + const fn = feed.getPluginInstances; + const boundFn = fn.bind(feed); + + //fetch resource is a utility to fetch paginate resources + const { resource: pluginInstances } = await fetchResource( + params, + boundFn, + ); + + const selected = pluginInstances[pluginInstances.length - 1]; + const pluginInstanceObj = { + selected, + pluginInstances, + }; + //This action triggers a resource fetch in the resource saga + dispatch(getSelectedPlugin(selected)); + dispatch(getPluginInstanceStatusRequest(pluginInstanceObj)); + return { selected, pluginInstances }; + } catch (error) { + const errMessage = catchError(error).error_message; + return rejectWithValue(errMessage); + } + }, +); + +// Async thunk for adding a node +export const addNode = createAsyncThunk< + PluginInstanceObj, + AddNodePayload, + { rejectValue: string } +>( + "pluginInstance/addNode", + async ({ pluginItem, nodes }, { dispatch, rejectWithValue }) => { + try { + const pluginInstances = [...nodes, pluginItem]; + dispatch(getSelectedPlugin(pluginItem)); + return { selected: pluginItem, pluginInstances }; + } catch (error) { + return rejectWithValue("Failed to add node."); + } + }, +); + // Create a slice const pluginInstanceSlice = createSlice({ name: "pluginInstance", @@ -25,37 +83,7 @@ const pluginInstanceSlice = createSlice({ getSelectedPlugin(state, action: PayloadAction) { state.selectedPlugin = action.payload; }, - getSelectedD3Node(state, action: PayloadAction) { - state.selectedD3Node = action.payload; - }, - getPluginInstancesRequest(state, _action: PayloadAction) { - state.pluginInstances.loading = true; - }, - getPluginInstancesSuccess(state, action: PayloadAction) { - state.selectedPlugin = action.payload.selected; - state.pluginInstances = { - data: action.payload.pluginInstances, - error: "", - loading: false, - }; - }, - getPluginInstancesError(state, action: PayloadAction) { - state.pluginInstances = { - data: undefined, - error: action.payload, - loading: false, - }; - }, - addNodeRequest(_state, _action: PayloadAction) { - // This action might be redundant if node adding is handled in saga - }, - addNodeSuccess(state, action: PayloadAction) { - if (state.pluginInstances.data) { - state.pluginInstances.data.push(action.payload); - } else { - state.pluginInstances.data = [action.payload]; - } - }, + setPluginTitle(state, action: PayloadAction) { if (state.pluginInstances.data) { const foundIndex = state.pluginInstances.data.findIndex( @@ -67,23 +95,63 @@ const pluginInstanceSlice = createSlice({ } } }, + setPluginInstancesAndSelectedPlugin( + state, + action: PayloadAction<{ + selected: PluginInstance; + pluginInstances: PluginInstance[]; + }>, + ) { + state.selectedPlugin = action.payload.selected; + state.pluginInstances.data = action.payload.pluginInstances; + }, resetPluginInstances(_state) { return initialState; }, }, + extraReducers: (builder) => { + builder + .addCase(fetchPluginInstances.pending, (state) => { + state.pluginInstances.loading = true; + state.pluginInstances.error = ""; + }) + .addCase( + fetchPluginInstances.fulfilled, + (state, action: PayloadAction) => { + state.pluginInstances = { + data: action.payload.pluginInstances, + error: "", + loading: false, + }; + }, + ) + .addCase(fetchPluginInstances.rejected, (state, action) => { + state.pluginInstances = { + data: [], + error: action.payload || "Failed to fetch plugin instances.", + loading: false, + }; + }) + + .addCase( + addNode.fulfilled, + (state, action: PayloadAction) => { + if (state.pluginInstances.data) { + state.pluginInstances.data.push(action.payload.selected); + } else { + state.pluginInstances.data = [action.payload.selected]; + } + }, + ); + }, }); // Export the actions export const { getSelectedPlugin, - getSelectedD3Node, - getPluginInstancesRequest, - getPluginInstancesSuccess, - getPluginInstancesError, - addNodeRequest, - addNodeSuccess, setPluginTitle, resetPluginInstances, + setPluginInstancesAndSelectedPlugin, } = pluginInstanceSlice.actions; // Export the reducer diff --git a/src/store/pluginInstance/saga.ts b/src/store/pluginInstance/saga.ts deleted file mode 100644 index 533a3fb11..000000000 --- a/src/store/pluginInstance/saga.ts +++ /dev/null @@ -1,76 +0,0 @@ -import type { Feed, PluginInstance } from "@fnndsc/chrisapi"; -import { all, fork, put, takeEvery } from "@redux-saga/core/effects"; -import { catchError, fetchResource } from "../../api/common"; -import type { IActionTypeParam } from "../../api/model"; -import { getPluginInstanceStatusRequest } from "../resources/resourceSlice"; -import { - addNodeRequest, - addNodeSuccess, - getPluginInstancesError, - getPluginInstancesRequest, - getPluginInstancesSuccess, - getSelectedPlugin, -} from "./pluginInstanceSlice"; - -function* setPluginInstances(feed: Feed) { - try { - const params = { limit: 15, offset: 0 }; - const fn = feed.getPluginInstances; - const boundFn = fn.bind(feed); - const { resource: pluginInstances } = yield fetchResource( - params, - boundFn, - ); - - const selected = pluginInstances[pluginInstances.length - 1]; - const pluginInstanceObj = { - selected, - pluginInstances, - }; - - yield all([ - put(getSelectedPlugin(selected)), - put(getPluginInstancesSuccess(pluginInstanceObj)), - put(getPluginInstanceStatusRequest(pluginInstanceObj)), - ]); - } catch (error: any) { - const errObj = catchError(error).error_message; - yield put(getPluginInstancesError(errObj)); - } -} - -function* handleGetPluginInstances(action: IActionTypeParam) { - const feed: Feed = action.payload; - yield setPluginInstances(feed); -} - -function* handleAddNode(action: IActionTypeParam) { - const item: PluginInstance = action.payload.pluginItem; - const pluginInstances: PluginInstance[] = [...action.payload.nodes, item]; - - try { - yield all([ - put(addNodeSuccess(item)), - put(getSelectedPlugin(item)), - put(getPluginInstanceStatusRequest({ selected: item, pluginInstances })), - ]); - } catch (err) { - console.error(err); - } -} - -// ------------------------------------------------------------------------ -// Description: Delete a node -// ------------------------------------------------------------------------ - -function* watchGetPluginInstanceRequest() { - yield takeEvery(getPluginInstancesRequest.type, handleGetPluginInstances); -} - -function* watchAddNode() { - yield takeEvery(addNodeRequest.type, handleAddNode); -} - -export function* pluginInstanceSaga() { - yield all([fork(watchGetPluginInstanceRequest), fork(watchAddNode)]); -} diff --git a/src/store/pluginInstance/types.ts b/src/store/pluginInstance/types.ts index 170a76a73..60a79b64f 100644 --- a/src/store/pluginInstance/types.ts +++ b/src/store/pluginInstance/types.ts @@ -13,14 +13,14 @@ export interface PluginInstanceObj { } export interface PluginInstancePayload { - data?: PluginInstance[]; + data: PluginInstance[]; error: string; loading: boolean; } export interface AddNodePayload { pluginItem: PluginInstance; - nodes?: PluginInstance[]; + nodes: PluginInstance[]; } export interface SplitNodesPayload { @@ -32,5 +32,4 @@ export interface SplitNodesPayload { export interface IPluginInstanceState { pluginInstances: PluginInstancePayload; selectedPlugin?: PluginInstance; - selectedD3Node?: any; } diff --git a/src/store/resources/resourceSlice.ts b/src/store/resources/resourceSlice.ts index 1af98709e..db231ed2c 100644 --- a/src/store/resources/resourceSlice.ts +++ b/src/store/resources/resourceSlice.ts @@ -15,7 +15,7 @@ const initialState: IResourceState = { pluginInstanceStatus: {}, pluginInstanceResource: {}, pluginFiles: {}, - url: "", + loading: false, }; @@ -47,8 +47,9 @@ const resourceSlice = createSlice({ }, getPluginInstanceStatusRequest( _state, - _action: PayloadAction, + action: PayloadAction, ) { + console.log("DIspatch Called", action); // No state mutation needed for this action }, getPluginInstanceStatusSuccess( @@ -104,9 +105,6 @@ const resourceSlice = createSlice({ ) { return initialState; }, - setCurrentUrl(state, action: PayloadAction) { - state.url = action.payload; - }, }, }); @@ -121,7 +119,6 @@ export const { getPluginFilesSuccess, getPluginFilesError, resetActiveResources, - setCurrentUrl, } = resourceSlice.actions; export default resourceSlice.reducer; diff --git a/src/store/resources/saga.ts b/src/store/resources/saga.ts index e60e9bde4..4714a6ba2 100644 --- a/src/store/resources/saga.ts +++ b/src/store/resources/saga.ts @@ -297,7 +297,6 @@ function getLog(raw: string) { } // If both "deflate" and "zlib" fail, you may need to handle other compression methods here. - console.error("Unable to inflate the data."); return null; } diff --git a/src/store/resources/types.ts b/src/store/resources/types.ts index f0f67d86f..7d7a0272c 100644 --- a/src/store/resources/types.ts +++ b/src/store/resources/types.ts @@ -97,6 +97,6 @@ export interface IResourceState { pluginInstanceStatus: PluginInstanceStatusPayload; pluginInstanceResource: PluginInstanceResourcePayload; pluginFiles: FilesPayload; - url: string; + loading: boolean; } diff --git a/src/store/root/rootSaga.ts b/src/store/root/rootSaga.ts index 5e22a778d..d963e37d1 100644 --- a/src/store/root/rootSaga.ts +++ b/src/store/root/rootSaga.ts @@ -8,10 +8,9 @@ import { all, fork } from "redux-saga/effects"; /// ADD ALL Local Sagas: -import { pluginInstanceSaga } from "../pluginInstance/saga"; import { resourceSaga } from "../resources/saga"; import { cartSaga } from "../cart/saga"; export function* rootSaga() { - yield all([fork(pluginInstanceSaga), fork(resourceSaga), fork(cartSaga)]); + yield all([fork(resourceSaga), fork(cartSaga)]); } From e991ed90a1c78fe6f495d3f03e16ca04ba5a9ecf Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 14 Aug 2024 12:58:19 -0400 Subject: [PATCH 108/337] refactor: Remove unused code --- .../FeedOutputBrowser/FeedOutputBrowser.tsx | 4 +- src/components/FeedOutputBrowser/data.ts | 50 ------------------- src/components/FeedTree/FeedTree.css | 11 ---- src/components/FeedTree/FeedTree.tsx | 2 +- src/components/Feeds/FeedListView.tsx | 1 + src/components/Feeds/FeedView.tsx | 1 - src/components/Feeds/Feeds.css | 5 +- 7 files changed, 8 insertions(+), 66 deletions(-) delete mode 100644 src/components/FeedOutputBrowser/data.ts diff --git a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx index 8b9873289..4ff889bbe 100644 --- a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx +++ b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx @@ -1,12 +1,12 @@ +import type { PluginInstance } from "@fnndsc/chrisapi"; import { EmptyState, EmptyStateBody, EmptyStateVariant, Title, } from "@patternfly/react-core"; -import type { PluginInstance } from "@fnndsc/chrisapi"; -import FileBrowser from "./FileBrowser"; import { SpinContainer } from "../Common"; +import FileBrowser from "./FileBrowser"; import { useFeedBrowser } from "./useFeedBrowser"; import "./FeedOutputBrowser.css"; diff --git a/src/components/FeedOutputBrowser/data.ts b/src/components/FeedOutputBrowser/data.ts deleted file mode 100644 index ca216f17b..000000000 --- a/src/components/FeedOutputBrowser/data.ts +++ /dev/null @@ -1,50 +0,0 @@ -import { PluginInstance } from "@fnndsc/chrisapi"; - -export interface DataNode { - children: DataNode[]; - isLeaf?: boolean; - key: string | number; - title?: React.ReactNode; - item: PluginInstance; - parentId?: number; -} - -const firstElement = []; - -export const getFeedTree = (items: PluginInstance[]) => { - const tree = [], - mappedArr: { - [key: string]: DataNode; - } = {}; - - items.forEach((item) => { - const id = item.data.id; - const title = item.data.title || item.data.plugin_name; - if (!mappedArr.hasOwnProperty(id)) { - mappedArr[id] = { - key: id, - title: `${title}`, - parentId: item.data.previous_id, - item: item, - children: [], - }; - } - }); - - for (const id in mappedArr) { - let mappedElem; - if (mappedArr.hasOwnProperty(id)) { - mappedElem = mappedArr[id]; - - if (mappedElem.parentId) { - const parentId = mappedElem.parentId; - if (parentId && mappedArr[parentId] && mappedArr[parentId].children) - mappedArr[parentId].children.push(mappedElem); - } else { - firstElement.push(mappedElem); - tree.push(mappedElem); - } - } - } - return tree; -}; diff --git a/src/components/FeedTree/FeedTree.css b/src/components/FeedTree/FeedTree.css index ab34a9b5c..ed89b8303 100644 --- a/src/components/FeedTree/FeedTree.css +++ b/src/components/FeedTree/FeedTree.css @@ -149,17 +149,6 @@ } } -@keyframes queued { - 0% { - fill: pink; - } - 50% { - fill: pink; - } - 100% { - fill: pink; - } -} .node { cursor: pointer; diff --git a/src/components/FeedTree/FeedTree.tsx b/src/components/FeedTree/FeedTree.tsx index 2dfeebadf..6e2dbb4db 100644 --- a/src/components/FeedTree/FeedTree.tsx +++ b/src/components/FeedTree/FeedTree.tsx @@ -401,7 +401,7 @@ const FeedTree = (props: OwnProps) => { ); })} - {nodes?.map(({ data, x, y, parent }, i) => { + {nodes?.map(({ data, x, y, parent }) => { return ( {Array.from({ length: 15 }).map((_, index) => ( + // biome-ignore lint/suspicious/noArrayIndexKey: diff --git a/src/components/Feeds/FeedView.tsx b/src/components/Feeds/FeedView.tsx index 0ff8bc500..c24523440 100644 --- a/src/components/Feeds/FeedView.tsx +++ b/src/components/Feeds/FeedView.tsx @@ -116,7 +116,6 @@ const FeedView: React.FC = () => { dispatch(setShowToolbar(true)); return () => { - console.log("Unmount called"); if (dataRef.current?.selectedPlugin && dataRef.current.data) { dispatch(resetActiveResources(dataRef.current)); } diff --git a/src/components/Feeds/Feeds.css b/src/components/Feeds/Feeds.css index a98b70b4d..d0c174a5b 100644 --- a/src/components/Feeds/Feeds.css +++ b/src/components/Feeds/Feeds.css @@ -33,4 +33,7 @@ .chart.dark tspan { fill: white !important; - } \ No newline at end of file + } + + + \ No newline at end of file From d4be187fd1e63c5a8f5c62f3dddc772647d9efb5 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 14 Aug 2024 14:49:12 -0400 Subject: [PATCH 109/337] feat: Update Feed Table to be compact --- src/components/Feeds/FeedListView.tsx | 6 +++++- src/components/Feeds/Feeds.css | 5 +++-- 2 files changed, 8 insertions(+), 3 deletions(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index c38d69ab0..918a7cacc 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -232,7 +232,11 @@ const TableSelectable: React.FC = () => { {loadingFeedState ? ( ) : feedsToDisplay.length > 0 ? ( - +
{ - handleItem(item, type); + { + console.log("Test"); }} - key={type === "file" ? item.data.fname : item.data.path} // Assuming 'item' has an 'id' property > - - - - + { + handleOnClick(e, item, path, type); + }} + > + + + + + ); }; @@ -247,6 +291,10 @@ const FileBrowser = (props: FileBrowserProps) => { /> {drawerState.files.open && ( +
diff --git a/src/components/FeedOutputBrowser/types.ts b/src/components/FeedOutputBrowser/types.ts index d1927c2ed..816458ebe 100644 --- a/src/components/FeedOutputBrowser/types.ts +++ b/src/components/FeedOutputBrowser/types.ts @@ -5,17 +5,19 @@ import type { } from "@fnndsc/chrisapi"; import type { DataNode } from "../../store/explorer/types"; +export interface FilesPayload { + folderFiles: FileBrowserFolderFile[]; + children: any[]; + linkFiles: FileBrowserFolderLinkFile[]; + path: string; +} + export interface FileBrowserProps { - pluginFilesPayload: { - folderFiles: FileBrowserFolderFile[]; - children: any[]; - linkFiles: FileBrowserFolderLinkFile[]; - error: any; - path: string; - }; + pluginFilesPayload: FilesPayload; handleFileClick: (path: string) => void; selected: PluginInstance; filesLoading: boolean; + inValidateFolders: () => void; } export interface FileBrowserState { diff --git a/src/components/FeedOutputBrowser/useFeedBrowser.tsx b/src/components/FeedOutputBrowser/useFeedBrowser.tsx index 4b3158873..9e84badd6 100644 --- a/src/components/FeedOutputBrowser/useFeedBrowser.tsx +++ b/src/components/FeedOutputBrowser/useFeedBrowser.tsx @@ -1,97 +1,153 @@ +import type { + FileBrowserFolderFile, + FileBrowserFolderLinkFile, +} from "@fnndsc/chrisapi"; +import { useQuery, useQueryClient } from "@tanstack/react-query"; import React from "react"; -import { useDispatch } from "react-redux"; -import { getPluginFilesRequest } from "../../store/resources/resourceSlice"; +import ChrisAPIClient from "../../api/chrisapiclient"; +import { fetchResource } from "../../api/common"; +import { catchError } from "../../api/common"; import { useTypedSelector } from "../../store/hooks"; +import type { FilesPayload } from "./types"; const status = ["finishedSuccessfully", "finishedWithError", "cancelled"]; -const getInitialDownloadState = () => { +const getInitialDownloadState = () => ({ + count: 0, + status: false, + plugin_name: "", + error: "", + fetchingFiles: false, +}); + +export const fetchFilesFromAPath = async ( + path: string, +): Promise => { + console.log("Path", path); + const client = ChrisAPIClient.getClient(); + const foldersList = await client.getFileBrowserFolders({ + path, + }); + + const folders = foldersList.getItems(); + + if (folders) { + const folder = folders[0]; + if (folder) { + const pagination = { limit: 100, offset: 0 }; + const fetchChildren = folder.getChildren; + const boundChildren = fetchChildren.bind(folder); + + try { + const { resource: children } = await fetchResource( + pagination, + boundChildren, + ); + const linkFilesFn = folder.getLinkFiles; + const boundLinkFilesFn = linkFilesFn.bind(folder); + const { resource: linkFiles } = + await fetchResource( + pagination, + boundLinkFilesFn, + ); + const filesFn = folder.getFiles; + const boundFilesFn = filesFn.bind(folder); + const { resource: folderFiles } = + await fetchResource(pagination, boundFilesFn); + + return { + folderFiles: folderFiles, + linkFiles: linkFiles, + children: children, + path, + }; + } catch (error) { + const errorMessage = catchError(error).error_message; + throw new Error(errorMessage); + } + } + } + return { - count: 0, - status: false, - plugin_name: "", - error: "", - fetchingFiles: false, + folderFiles: [], + linkFiles: [], + children: [], + path, }; }; export const useFeedBrowser = () => { - const dispatch = useDispatch(); + const queryClient = useQueryClient(); const drawerState = useTypedSelector((state) => state.drawers); const [download, setDownload] = React.useState(getInitialDownloadState); + const [currentPath, setCurrentPath] = React.useState(""); const pluginInstances = useTypedSelector( (state) => state.instance.pluginInstances, ); - const { pluginFiles, loading: filesLoading } = useTypedSelector( - (state) => state.resource, - ); const selected = useTypedSelector((state) => state.instance.selectedPlugin); const { data: plugins } = pluginInstances; - const pluginFilesPayload = selected && pluginFiles[selected.data.id]; + const { + data: pluginFilesPayload, + isLoading: filesLoading, + isError, + error, + } = useQuery({ + queryKey: ["pluginFiles", currentPath], + queryFn: () => fetchFilesFromAPath(currentPath), + enabled: !!selected && !!currentPath, + }); const statusTitle = useTypedSelector((state) => { if (selected) { const id = selected.data.id; - if (selected.data.id && state.resource.pluginInstanceStatus[id]) { + if (id && state.resource.pluginInstanceStatus[id]) { return state.resource.pluginInstanceStatus[id].status; } } }); - const finished = selected && status.includes(selected.data.status); + const finished = selected && status.includes(selected?.data.status); React.useEffect(() => { if ((statusTitle && status.includes(statusTitle)) || finished) { + // User is trying to download a file before it is available if (download.error) { - setDownload((state) => { - return { - ...state, - error: "Files are ready for download now...", - }; - }); - } - - if (selected && !pluginFilesPayload) { - dispatch( - getPluginFilesRequest({ - id: selected.data.id, - path: selected.data.output_path, - }), - ); - } + setDownload((state) => ({ + ...state, + error: "Files are not ready for download now...", + })); - if (download.error) { setTimeout(() => { setDownload(getInitialDownloadState); }, 3000); } } - }, [ - selected, - finished, - dispatch, - pluginFilesPayload, - statusTitle, - download.error, - ]); + }, [finished, pluginFilesPayload, statusTitle, download.error]); + + React.useEffect(() => { + setCurrentPath(selected?.data.output_path); + }, [selected]); const handleFileClick = (path: string) => { if (selected) { - dispatch( - getPluginFilesRequest({ - id: selected.data.id, - path, - }), - ); + setCurrentPath(path); } }; + const inValidateFolders = () => { + queryClient.invalidateQueries({ + queryKey: ["pluginFiles", currentPath], + }); + }; + return { handleFileClick, filesLoading, + isError, + error, plugins, statusTitle, download, @@ -99,5 +155,6 @@ export const useFeedBrowser = () => { pluginFilesPayload, filesStatus: drawerState.files, previewStatus: drawerState.preview, + inValidateFolders, }; }; diff --git a/src/components/Icons/index.tsx b/src/components/Icons/index.tsx index 644aa52c7..f3a9e197e 100644 --- a/src/components/Icons/index.tsx +++ b/src/components/Icons/index.tsx @@ -64,9 +64,13 @@ const MergeIcon = ({ className }: { className?: string }) => { ); }; -const ArchiveIcon = ({ className }: { className?: string }) => { +const ArchiveIcon = ({ + className, + style, +}: { className?: string; style?: React.CSSProperties }) => { return ( { ); }; -const FileImageIcon = () => { +const FileImageIcon = ({ style }: { style?: React.CSSProperties }) => { return ( { ); }; -const FileTxtIcon = () => { +const FileTxtIcon = ({ style }: { style?: React.CSSProperties }) => { return ( { ); }; -const FilePdfIcon = () => { +const FilePdfIcon = ({ style }: { style?: React.CSSProperties }) => { return ( ) { // No state mutation needed for this action }, - getPluginFilesRequest( - state, - _action: PayloadAction<{ id: number; path: string }>, - ) { - state.loading = true; - }, - getPluginFilesSuccess( - state, - action: PayloadAction<{ - id: string; - folderFiles: FileBrowserFolderFile[]; - linkFiles: FileBrowserFolderLinkFile[]; - children: any[]; - path: string; - }>, - ) { - const { id, folderFiles, linkFiles, children, path } = action.payload; - state.loading = false; - state.pluginFiles[id] = { - folderFiles, - children, - linkFiles, - error: "", - path, - }; - }, - getPluginFilesError( - state, - action: PayloadAction<{ id: number; error: any }>, - ) { - const { id, error } = action.payload; - state.loading = false; - state.pluginFiles[id] = { - ...state.pluginFiles[id], - error, - }; - }, + resetActiveResources( _state, _action: PayloadAction, @@ -115,9 +72,7 @@ export const { getPluginInstanceStatusRequest, getPluginInstanceStatusSuccess, stopFetchingStatusResources, - getPluginFilesRequest, - getPluginFilesSuccess, - getPluginFilesError, + resetActiveResources, } = resourceSlice.actions; diff --git a/src/store/resources/saga.ts b/src/store/resources/saga.ts index 4714a6ba2..5ca5fc43f 100644 --- a/src/store/resources/saga.ts +++ b/src/store/resources/saga.ts @@ -7,12 +7,9 @@ import { all, delay, fork, put, takeEvery } from "@redux-saga/core/effects"; import { inflate, inflateRaw } from "pako"; import type { Task } from "redux-saga"; import ChrisAPIClient from "../../api/chrisapiclient"; -import { catchError, fetchResource } from "../../api/common"; + import type { IActionTypeParam } from "../../api/model"; import { - getPluginFilesError, - getPluginFilesRequest, - getPluginFilesSuccess, getPluginInstanceResourceSuccess, getPluginInstanceStatusSuccess, resetActiveResources, @@ -20,90 +17,9 @@ import { stopFetchingStatusResources, getPluginInstanceStatusRequest, } from "./resourceSlice"; -import type { FetchFileResult, PluginStatusLabels } from "./types"; +import type { PluginStatusLabels } from "./types"; import { getSelectedPlugin } from "../pluginInstance/pluginInstanceSlice"; -export const fetchFilesFromAPath = async ( - path: string, -): Promise => { - const client = ChrisAPIClient.getClient(); - const foldersList = await client.getFileBrowserFolders({ - path, - }); - - const folders = foldersList.getItems(); - - if (folders) { - const folder = folders[0]; - if (folder) { - const pagination = { limit: 100, offset: 0 }; - const fetchChildren = folder.getChildren; - const boundChildren = fetchChildren.bind(folder); - - try { - const { resource: children } = await fetchResource( - pagination, - boundChildren, - ); - const linkFilesFn = folder.getLinkFiles; - const boundLinkFilesFn = linkFilesFn.bind(folder); - const { resource: linkFiles } = - await fetchResource( - pagination, - boundLinkFilesFn, - ); - const filesFn = folder.getFiles; - const boundFilesFn = filesFn.bind(folder); - const { resource: folderFiles } = - await fetchResource(pagination, boundFilesFn); - - return { - folderFiles: folderFiles, - linkFiles: linkFiles, - children: children, - }; - } catch (error) { - if (error instanceof Error) { - throw new Error(error.message); - } - const errorMessage = catchError(error).error_message; - throw new Error(errorMessage); - } - } - } - - return { - folderFiles: [], - linkFiles: [], - children: [], - }; -}; - -function* fetchPluginFiles(action: IActionTypeParam) { - const { id, path } = action.payload; - - try { - const { folderFiles, linkFiles, children }: FetchFileResult = - yield fetchFilesFromAPath(path); - - const payload = { - id, - folderFiles, - linkFiles, - children, - path, - }; - yield put(getPluginFilesSuccess(payload)); - } catch (error) { - const errorMessage = error instanceof Error ? error.message : error; - const payload = { - id, - error: errorMessage, - }; - yield put(getPluginFilesError(payload)); - } -} - function* handleGetPluginStatus(instance: PluginInstance) { while (true) { try { @@ -251,10 +167,6 @@ function* pollInstanceEndpoints(action: IActionTypeParam) { yield watchStatusCancelPoll(pollTask); } -function* watchGetPluginFilesRequest() { - yield takeEvery(getPluginFilesRequest.type, fetchPluginFiles); -} - function* watchGetPluginStatusRequest() { yield takeEvery(getPluginInstanceStatusRequest.type, pollInstanceEndpoints); } @@ -269,7 +181,6 @@ function* watchSelectedPlugin() { export function* resourceSaga() { yield all([ - fork(watchGetPluginFilesRequest), fork(watchGetPluginStatusRequest), fork(watchResetActiveResources), fork(watchSelectedPlugin), diff --git a/src/store/resources/types.ts b/src/store/resources/types.ts index 7d7a0272c..02f5fdc29 100644 --- a/src/store/resources/types.ts +++ b/src/store/resources/types.ts @@ -57,12 +57,6 @@ export interface ResourcePayload { pluginLog?: Logs; } -export interface FetchFileResult { - folderFiles: FileBrowserFolderFile[]; - linkFiles: FileBrowserFolderLinkFile[]; - children: any[]; -} - export interface FilesPayload { [id: string]: { folderFiles: FileBrowserFolderFile[]; @@ -96,7 +90,4 @@ export interface DestroyActiveResources { export interface IResourceState { pluginInstanceStatus: PluginInstanceStatusPayload; pluginInstanceResource: PluginInstanceResourcePayload; - pluginFiles: FilesPayload; - - loading: boolean; } From 3394abfc153f7287d41a7f6af296fdd963049ead Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 14 Aug 2024 16:51:42 -0400 Subject: [PATCH 111/337] feat: Fix the creation of folders in the file browser table --- src/components/FeedOutputBrowser/FileBrowser.tsx | 1 + src/components/FeedOutputBrowser/types.ts | 2 ++ src/components/FeedOutputBrowser/useFeedBrowser.tsx | 3 ++- 3 files changed, 5 insertions(+), 1 deletion(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 4379eff3c..978987d12 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -294,6 +294,7 @@ const FileBrowser = (props: FileBrowserProps) => {
diff --git a/src/components/FeedOutputBrowser/types.ts b/src/components/FeedOutputBrowser/types.ts index 816458ebe..0f757b213 100644 --- a/src/components/FeedOutputBrowser/types.ts +++ b/src/components/FeedOutputBrowser/types.ts @@ -1,6 +1,7 @@ import type { FileBrowserFolderFile, FileBrowserFolderLinkFile, + FileBrowserFolderList, PluginInstance, } from "@fnndsc/chrisapi"; import type { DataNode } from "../../store/explorer/types"; @@ -9,6 +10,7 @@ export interface FilesPayload { folderFiles: FileBrowserFolderFile[]; children: any[]; linkFiles: FileBrowserFolderLinkFile[]; + folderList?: FileBrowserFolderList; path: string; } diff --git a/src/components/FeedOutputBrowser/useFeedBrowser.tsx b/src/components/FeedOutputBrowser/useFeedBrowser.tsx index 9e84badd6..9ae9ccc55 100644 --- a/src/components/FeedOutputBrowser/useFeedBrowser.tsx +++ b/src/components/FeedOutputBrowser/useFeedBrowser.tsx @@ -23,7 +23,6 @@ const getInitialDownloadState = () => ({ export const fetchFilesFromAPath = async ( path: string, ): Promise => { - console.log("Path", path); const client = ChrisAPIClient.getClient(); const foldersList = await client.getFileBrowserFolders({ path, @@ -59,6 +58,7 @@ export const fetchFilesFromAPath = async ( folderFiles: folderFiles, linkFiles: linkFiles, children: children, + folderList: foldersList, path, }; } catch (error) { @@ -72,6 +72,7 @@ export const fetchFilesFromAPath = async ( folderFiles: [], linkFiles: [], children: [], + folderList: undefined, path, }; }; From fdef83f2457b6643c01a19f86fe6a9acf6bd3e09 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Sun, 18 Aug 2024 20:59:53 -0400 Subject: [PATCH 112/337] fix: Fix the bug with fetching files in the file browser --- package-lock.json | 3814 +++++------------ package.json | 1 - .../FeedOutputBrowser/useFeedBrowser.tsx | 27 +- 3 files changed, 1134 insertions(+), 2708 deletions(-) diff --git a/package-lock.json b/package-lock.json index 74876b97d..c6c051039 100644 --- a/package-lock.json +++ b/package-lock.json @@ -44,7 +44,6 @@ "niivue-react": "github:niivue/niivue-react", "npm": "^10.8.2", "p-queue": "^8.0.1", - "package.json": "^0.0.0", "pako": "^1.0.11", "preval.macro": "^5.0.0", "query-string": "^9.0.0", @@ -100,8 +99,6 @@ }, "node_modules/@ampproject/remapping": { "version": "2.3.0", - "resolved": "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.3.0.tgz", - "integrity": "sha512-30iZtAPgz+LTIYoeivqYo853f02jBYSd5uGnGpkFV0M3xOt9aN73erkgYAmZU43x4VfqcnLxW9Kpg3R5LC4YYw==", "license": "Apache-2.0", "dependencies": { "@jridgewell/gen-mapping": "^0.3.5", @@ -113,8 +110,6 @@ }, "node_modules/@ant-design/colors": { "version": "7.1.0", - "resolved": "https://registry.npmjs.org/@ant-design/colors/-/colors-7.1.0.tgz", - "integrity": "sha512-MMoDGWn1y9LdQJQSHiCC20x3uZ3CwQnv9QMz6pCmJOrqdgM9YxsoVVY0wtrdXbmfSgnV0KNk6zi09NAhMR2jvg==", "license": "MIT", "dependencies": { "@ctrl/tinycolor": "^3.6.1" @@ -122,8 +117,6 @@ }, "node_modules/@ant-design/cssinjs": { "version": "1.21.0", - "resolved": "https://registry.npmjs.org/@ant-design/cssinjs/-/cssinjs-1.21.0.tgz", - "integrity": "sha512-gIilraPl+9EoKdYxnupxjHB/Q6IHNRjEXszKbDxZdsgv4sAZ9pjkCq8yanDWNvyfjp4leir2OVAJm0vxwKK8YA==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.11.1", @@ -141,8 +134,6 @@ }, "node_modules/@ant-design/cssinjs-utils": { "version": "1.0.3", - "resolved": "https://registry.npmjs.org/@ant-design/cssinjs-utils/-/cssinjs-utils-1.0.3.tgz", - "integrity": "sha512-BrztZZKuoYcJK8uEH40ylBemf/Mu/QPiDos56g2bv6eUoniQkgQHOCOvA3+pncoFO1TaS8xcUCIqGzDA0I+ZVQ==", "license": "MIT", "dependencies": { "@ant-design/cssinjs": "^1.21.0", @@ -156,8 +147,6 @@ }, "node_modules/@ant-design/cssinjs-utils/node_modules/@babel/runtime": { "version": "7.25.0", - "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.0.tgz", - "integrity": "sha512-7dRy4DwXwtzBrPbZflqxnvfxLF8kdZXPkhymtDeFoFqE6ldzjQFgYTtYIFARcLEYDrqfBfYcZt1WqFxRoyC9Rw==", "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" @@ -168,8 +157,6 @@ }, "node_modules/@ant-design/fast-color": { "version": "2.0.6", - "resolved": "https://registry.npmjs.org/@ant-design/fast-color/-/fast-color-2.0.6.tgz", - "integrity": "sha512-y2217gk4NqL35giHl72o6Zzqji9O7vHh9YmhUVkPtAOpoTCH4uWxo/pr4VE8t0+ChEPs0qo4eJRC5Q1eXWo3vA==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.24.7" @@ -180,8 +167,6 @@ }, "node_modules/@ant-design/fast-color/node_modules/@babel/runtime": { "version": "7.25.0", - "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.0.tgz", - "integrity": "sha512-7dRy4DwXwtzBrPbZflqxnvfxLF8kdZXPkhymtDeFoFqE6ldzjQFgYTtYIFARcLEYDrqfBfYcZt1WqFxRoyC9Rw==", "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" @@ -192,8 +177,6 @@ }, "node_modules/@ant-design/icons": { "version": "5.4.0", - "resolved": "https://registry.npmjs.org/@ant-design/icons/-/icons-5.4.0.tgz", - "integrity": 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"https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", - "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==", "license": "ISC" }, "node_modules/write-file-atomic": { "version": "3.0.3", - "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-3.0.3.tgz", - "integrity": "sha512-AvHcyZ5JnSfq3ioSyjrBkH9yW4m7Ayk8/9My/DD9onKeu/94fwrMocemO2QAJFAlnnDN+ZDS+ZjAR5ua1/PV/Q==", "dev": true, "license": "ISC", "dependencies": { @@ -13109,8 +11555,6 @@ }, "node_modules/write-file-atomic/node_modules/typedarray-to-buffer": { "version": "3.1.5", - "resolved": "https://registry.npmjs.org/typedarray-to-buffer/-/typedarray-to-buffer-3.1.5.tgz", - "integrity": "sha512-zdu8XMNEDepKKR+XYOXAVPtWui0ly0NtohUscw+UmaHiAWT8hrV1rr//H6V+0DvJ3OQ19S979M0laLfX8rm82Q==", "dev": true, "license": "MIT", "dependencies": { @@ -13119,8 +11563,6 @@ }, "node_modules/xmlbuilder2": { "version": "3.0.2", - "resolved": "https://registry.npmjs.org/xmlbuilder2/-/xmlbuilder2-3.0.2.tgz", - "integrity": "sha512-h4MUawGY21CTdhV4xm3DG9dgsqyhDkZvVJBx88beqX8wJs3VgyGQgAn5VreHuae6unTQxh115aMK5InCVmOIKw==", "license": "MIT", "dependencies": { "@oozcitak/dom": "1.15.10", @@ -13135,8 +11577,6 @@ }, "node_modules/xmlbuilder2/node_modules/js-yaml": { "version": "3.14.0", - "resolved": "https://registry.npmjs.org/js-yaml/-/js-yaml-3.14.0.tgz", - "integrity": "sha512-/4IbIeHcD9VMHFqDR/gQ7EdZdLimOvW2DdcxFjdyyZ9NsbS+ccrXqVWDtab/lRl5AlUqmpBx8EhPaWR+OtY17A==", "license": "MIT", "dependencies": { "argparse": "^1.0.7", @@ -13148,8 +11588,6 @@ }, "node_modules/xss": { "version": "1.0.14", - "resolved": "https://registry.npmjs.org/xss/-/xss-1.0.14.tgz", - "integrity": "sha512-og7TEJhXvn1a7kzZGQ7ETjdQVS2UfZyTlsEdDOqvQF7GoxNfY+0YLCzBy1kPdsDDx4QuNAonQPddpsn6Xl/7sw==", "license": "MIT", "dependencies": { "commander": "^2.20.3", @@ -13164,14 +11602,10 @@ }, "node_modules/xss/node_modules/commander": { "version": "2.20.3", - "resolved": "https://registry.npmjs.org/commander/-/commander-2.20.3.tgz", - "integrity": "sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ==", "license": "MIT" }, "node_modules/xtend": { "version": "2.2.0", - "resolved": "https://registry.npmjs.org/xtend/-/xtend-2.2.0.tgz", - "integrity": "sha512-SLt5uylT+4aoXxXuwtQp5ZnMMzhDb1Xkg4pEqc00WUJCQifPfV9Ub1VrNhp9kXkrjZD2I2Hl8WnjP37jzZLPZw==", "dev": true, "engines": { "node": ">=0.4" @@ -13179,21 +11613,15 @@ }, "node_modules/y18n": { "version": "4.0.3", - "resolved": "https://registry.npmjs.org/y18n/-/y18n-4.0.3.tgz", - "integrity": "sha512-JKhqTOwSrqNA1NY5lSztJ1GrBiUodLMmIZuLiDaMRJ+itFd+ABVE8XBjOvIWL+rSqNDC74LCSFmlb/U4UZ4hJQ==", "dev": true, "license": "ISC" }, "node_modules/yallist": { "version": "3.1.1", - "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz", - "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==", "license": "ISC" }, "node_modules/yaml": { "version": "1.10.2", - "resolved": "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz", - "integrity": "sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg==", "license": "ISC", "engines": { "node": ">= 6" @@ -13201,8 +11629,6 @@ }, "node_modules/yargs": { "version": "15.4.1", - "resolved": "https://registry.npmjs.org/yargs/-/yargs-15.4.1.tgz", - "integrity": "sha512-aePbxDmcYW++PaqBsJ+HYUFwCdv4LVvdnhBy78E57PIor8/OVvhMrADFFEDh8DHDFRv/O9i3lPhsENjO7QX0+A==", "dev": true, "license": "MIT", "dependencies": { @@ -13224,8 +11650,6 @@ }, "node_modules/yargs-parser": { "version": "18.1.3", - "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-18.1.3.tgz", - "integrity": "sha512-o50j0JeToy/4K6OZcaQmW6lyXXKhq7csREXcDwk2omFPJEwUNOVtJKvmDr9EI1fAJZUyZcRF7kxGBWmRXudrCQ==", "dev": true, "license": "ISC", "dependencies": { diff --git a/package.json b/package.json index 4eb923dcb..817d292ab 100644 --- a/package.json +++ b/package.json @@ -60,7 +60,6 @@ "niivue-react": "github:niivue/niivue-react", "npm": "^10.8.2", "p-queue": "^8.0.1", - "package.json": "^0.0.0", "pako": "^1.0.11", "preval.macro": "^5.0.0", "query-string": "^9.0.0", diff --git a/src/components/FeedOutputBrowser/useFeedBrowser.tsx b/src/components/FeedOutputBrowser/useFeedBrowser.tsx index 9ae9ccc55..9c5802e5a 100644 --- a/src/components/FeedOutputBrowser/useFeedBrowser.tsx +++ b/src/components/FeedOutputBrowser/useFeedBrowser.tsx @@ -90,17 +90,6 @@ export const useFeedBrowser = () => { const selected = useTypedSelector((state) => state.instance.selectedPlugin); const { data: plugins } = pluginInstances; - const { - data: pluginFilesPayload, - isLoading: filesLoading, - isError, - error, - } = useQuery({ - queryKey: ["pluginFiles", currentPath], - queryFn: () => fetchFilesFromAPath(currentPath), - enabled: !!selected && !!currentPath, - }); - const statusTitle = useTypedSelector((state) => { if (selected) { const id = selected.data.id; @@ -110,7 +99,21 @@ export const useFeedBrowser = () => { } }); - const finished = selected && status.includes(selected?.data.status); + const finished = !!( + (selected && status.includes(selected?.data.status)) || + (statusTitle && status.includes(statusTitle)) + ); + + const { + data: pluginFilesPayload, + isLoading: filesLoading, + isError, + error, + } = useQuery({ + queryKey: ["pluginFiles", currentPath], + queryFn: () => fetchFilesFromAPath(currentPath), + enabled: !!selected && !!currentPath && finished, + }); React.useEffect(() => { if ((statusTitle && status.includes(statusTitle)) || finished) { From 1f7320a0969056a51e6db2486bc43eab30b31c07 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 19 Aug 2024 10:22:22 -0400 Subject: [PATCH 113/337] feat: Implement missing features in the file browser table --- .../FeedOutputBrowser/FileBrowser.tsx | 52 +++++++++---------- src/components/Feeds/FeedListView.tsx | 2 +- .../NewLibrary/components/Operations.css | 3 ++ .../NewLibrary/components/Operations.tsx | 20 +++++-- src/store/resources/resourceSlice.ts | 3 +- 5 files changed, 47 insertions(+), 33 deletions(-) create mode 100644 src/components/NewLibrary/components/Operations.css diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 978987d12..4eca4e641 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -29,7 +29,7 @@ import { ClipboardCopyContainer, SpinContainer, getIcon } from "../Common"; import { ThemeContext } from "../DarkTheme/useTheme"; import { DrawerActionButton } from "../Feeds/DrawerUtils"; import { handleMaximize, handleMinimize } from "../Feeds/utilties"; -import { DownloadIcon, HomeIcon } from "../Icons"; +import { HomeIcon } from "../Icons"; import useLongPress, { getBackgroundRowColor, } from "../NewLibrary/utils/longpress"; @@ -39,6 +39,7 @@ import type { FileBrowserProps } from "./types"; import { bytesToSize } from "./utilities"; import { FolderContextMenu } from "../NewLibrary/components/ContextMenu"; import Operations from "../NewLibrary/components/Operations"; +import { format } from "date-fns"; const previewAnimation = [{ opacity: "0.0" }, { opacity: "1.0" }]; @@ -46,6 +47,12 @@ const previewAnimationTiming = { duration: 1000, iterations: 1, }; +const columnNames = { + name: "Name", + created: "Created", + creator: "Creator", + size: "Size", +}; const FileBrowser = (props: FileBrowserProps) => { const { handlers } = useLongPress(); @@ -68,11 +75,7 @@ const FileBrowser = (props: FileBrowserProps) => { const username = useTypedSelector((state) => state.user.username); const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { folderFiles, linkFiles, children, path } = pluginFilesPayload; - const columnNames = { - name: "Name", - size: "Size", - download: "", - }; + const breadcrumb = path.split("/"); const currentPath = `home/${username}/feeds/feed_${feed?.data.id}/${selected?.data.plugin_name}_${selected?.data.id}/data`; @@ -235,25 +238,11 @@ const FileBrowser = (props: FileBrowserProps) => {
); - const downloadComponent = - type !== "file" ? undefined : ( -
{ onClick={(e) => { handleOnClick(e, item, path, type); }} + onContextMenu={(e) => { + handleOnClick(e, item, path, type); + }} > + + - ); @@ -292,6 +287,7 @@ const FileBrowser = (props: FileBrowserProps) => { {drawerState.files.open && ( {
diff --git a/src/components/Feeds/Feeds.css b/src/components/Feeds/Feeds.css index d0c174a5b..311c11f98 100644 --- a/src/components/Feeds/Feeds.css +++ b/src/components/Feeds/Feeds.css @@ -35,5 +35,6 @@ fill: white !important; } - - \ No newline at end of file + .feed-table tbody:where(.pf-v5-c-table__tbody) > tr:where(.pf-v5-c-table__tr) > * { + vertical-align:middle !important; +} \ No newline at end of file From 8927e233973ad233f69202e12c75d2920573fe11 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 14 Aug 2024 16:37:39 -0400 Subject: [PATCH 110/337] feat: Update the File Browser in the Feed View to use the operations and folder context menu hooks --- src/components/Common/index.tsx | 20 +-- src/components/CreateFeed/ChrisFileSelect.tsx | 12 +- src/components/CreateFeed/utils.ts | 38 +++-- .../FeedOutputBrowser/FeedOutputBrowser.tsx | 12 +- .../FeedOutputBrowser/FileBrowser.tsx | 80 ++++++++-- src/components/FeedOutputBrowser/types.ts | 16 +- .../FeedOutputBrowser/useFeedBrowser.tsx | 149 ++++++++++++------ src/components/Icons/index.tsx | 15 +- src/store/resources/resourceSlice.ts | 51 +----- src/store/resources/saga.ts | 93 +---------- src/store/resources/types.ts | 9 -- 11 files changed, 240 insertions(+), 255 deletions(-) diff --git a/src/components/Common/index.tsx b/src/components/Common/index.tsx index 7f6241372..3b7f22feb 100644 --- a/src/components/Common/index.tsx +++ b/src/components/Common/index.tsx @@ -361,25 +361,27 @@ export const ClipboardCopyFixed = ({ ); }; -export const getIcon = (type: string) => { +export const getIcon = (type: string, isDarkTheme: boolean) => { + const color = isDarkTheme ? "#FFFFFF" : "#000000"; // white for dark theme, black for light theme + const iconStyle = { color }; switch (type.toLowerCase()) { case "dir": - return ; + return ; case "dcm": case "jpg": case "png": - return ; + return ; case "txt": - return ; + return ; case "pdf": - return ; + return ; case "zip": - return ; + return ; case "link": - return ; + return ; case "folder": - return ; + return ; default: - return ; + return ; } }; diff --git a/src/components/CreateFeed/ChrisFileSelect.tsx b/src/components/CreateFeed/ChrisFileSelect.tsx index 6e779ea28..b5c12a28a 100644 --- a/src/components/CreateFeed/ChrisFileSelect.tsx +++ b/src/components/CreateFeed/ChrisFileSelect.tsx @@ -23,14 +23,14 @@ export function clearCache() { function getEmptyTree(username: string) { const node: DataBreadcrumb[] = []; node.push({ - breadcrumb: username, - title: username, + breadcrumb: `home/${username}`, + title: `home/${username}`, checkable: false, key: "0-0", }); node.push({ - breadcrumb: "SERVICES", - title: "SERVICES", + breadcrumb: "/SERVICES", + title: "/SERVICES", checkable: false, key: "0-1", }); @@ -81,7 +81,7 @@ const ChrisFileSelect: React.FC = ({ }, }); notification.info({ - message: `New File(s) added`, + message: "New File(s) added", description: `New ${path} file(s) added`, duration: 1, }); @@ -94,7 +94,7 @@ const ChrisFileSelect: React.FC = ({ }, }); notification.info({ - message: `File(s) removed`, + message: "File(s) removed", description: `${path} file(s) removed`, duration: 1, }); diff --git a/src/components/CreateFeed/utils.ts b/src/components/CreateFeed/utils.ts index 0e75440f3..a55418407 100644 --- a/src/components/CreateFeed/utils.ts +++ b/src/components/CreateFeed/utils.ts @@ -1,7 +1,7 @@ import type { PluginMeta, Tag, Pipeline } from "@fnndsc/chrisapi"; import type { EventDataNode } from "rc-tree/lib/interface"; import type { DataBreadcrumb } from "./types/feed"; -import { fetchFilesFromAPath } from "../../store/resources/saga"; +import { fetchFilesFromAPath } from "../FeedOutputBrowser/useFeedBrowser"; import ChrisAPIClient from "../../api/chrisapiclient"; import { fetchResource, fetchResources } from "../../api/common"; @@ -72,29 +72,37 @@ export const generateTreeNodes = async ( checkable: boolean; }[] = []; //@ts-ignore - const { files, folders } = await fetchFilesFromAPath(treeNode.breadcrumb); - const items = [...files, ...folders]; + const { folderFiles, linkFiles, children } = await fetchFilesFromAPath( + treeNode.breadcrumb, + ); + const items = [...folderFiles, ...linkFiles, ...children]; for (let i = 0; i < items.length; i++) { - if (typeof items[i] === "object") { - const filePath = items[i].data.fname.split("/"); - const fileName = filePath[filePath.length - 1]; + const item = items[i]; + if (item.data.path) { + // assume to be a folder or a link as files have fname's property + const path = item.data.path; + const fileNameList = path.split("/"); + const fileName = fileNameList[fileNameList.length - 1]; + arr.push({ - breadcrumb: `${treeNode.breadcrumb}/${fileName}`, + breadcrumb: path, title: fileName, key: `${treeNode.key}-${i}`, - isLeaf: true, - checkable: false, + isLeaf: false, + checkable: true, }); } else { - const checkList = ["uploads", "SERVICES", "PACS"]; - const isCheckable = !checkList.includes(items[i]); + // assumed to be a file + const path = item.data.fname; + const fileNameList = path.split("/"); + const fileName = fileNameList[fileNameList.length - 1]; arr.push({ - breadcrumb: `${treeNode.breadcrumb}/${items[i]}`, - title: items[i], + breadcrumb: `${treeNode.breadcrumb}/${fileName}`, + title: fileName, key: `${treeNode.key}-${i}`, - isLeaf: false, - checkable: isCheckable, + isLeaf: true, + checkable: true, }); } } diff --git a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx index 4ff889bbe..825522e45 100644 --- a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx +++ b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx @@ -5,10 +5,10 @@ import { EmptyStateVariant, Title, } from "@patternfly/react-core"; +import { Alert } from "../Antd"; import { SpinContainer } from "../Common"; import FileBrowser from "./FileBrowser"; import { useFeedBrowser } from "./useFeedBrowser"; - import "./FeedOutputBrowser.css"; export interface FeedOutputBrowserProps { @@ -25,21 +25,25 @@ const FeedOutputBrowser: React.FC = () => { statusTitle, handleFileClick, filesLoading, + isError, + error, + inValidateFolders, } = useFeedBrowser(); return (
- {pluginFilesPayload && selected ? ( + {pluginFilesPayload && selected && !isError ? ( ) : statusTitle && statusTitles.includes(statusTitle) ? ( - ) : filesLoading ? ( - + ) : isError ? ( + ) : ( )} diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 285008b16..4379eff3c 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -1,3 +1,7 @@ +import type { + FileBrowserFolder, + FileBrowserFolderFile, +} from "@fnndsc/chrisapi"; import { Breadcrumb, BreadcrumbItem, @@ -26,10 +30,15 @@ import { ThemeContext } from "../DarkTheme/useTheme"; import { DrawerActionButton } from "../Feeds/DrawerUtils"; import { handleMaximize, handleMinimize } from "../Feeds/utilties"; import { DownloadIcon, HomeIcon } from "../Icons"; +import useLongPress, { + getBackgroundRowColor, +} from "../NewLibrary/utils/longpress"; import FileDetailView from "../Preview/FileDetailView"; import XtkViewer from "../XtkViewer/XtkViewer"; import type { FileBrowserProps } from "./types"; import { bytesToSize } from "./utilities"; +import { FolderContextMenu } from "../NewLibrary/components/ContextMenu"; +import Operations from "../NewLibrary/components/Operations"; const previewAnimation = [{ opacity: "0.0" }, { opacity: "1.0" }]; @@ -39,16 +48,25 @@ const previewAnimationTiming = { }; const FileBrowser = (props: FileBrowserProps) => { + const { handlers } = useLongPress(); + const { handleOnClick } = handlers; const dispatch = useDispatch(); const feed = useTypedSelector((state) => state.feed.currentFeed.data); const handleDownloadMutation = useDownload(feed); const [api, contextHolder] = notification.useNotification(); const { isSuccess, isError, error: downloadError } = handleDownloadMutation; const { isDarkTheme } = useContext(ThemeContext); - const { pluginFilesPayload, handleFileClick, selected, filesLoading } = props; + const { + pluginFilesPayload, + handleFileClick, + selected, + filesLoading, + inValidateFolders, + } = props; const selectedFile = useTypedSelector((state) => state.explorer.selectedFile); const drawerState = useTypedSelector((state) => state.drawers); const username = useTypedSelector((state) => state.user.username); + const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { folderFiles, linkFiles, children, path } = pluginFilesPayload; const columnNames = { name: "Name", @@ -125,14 +143,17 @@ const FileBrowser = (props: FileBrowserProps) => { ?.animate(previewAnimation, previewAnimationTiming); }; - const handleItem = (item: any, type: string) => { + const handleItem = ( + item: FileBrowserFolderFile | FileBrowserFolder, + type: string, + ) => { if (type === "link" || type === "folder") { handleFileClick(item.data.path); } if (type === "file") { toggleAnimation(); - dispatch(setSelectedFile(item)); + dispatch(setSelectedFile(item as FileBrowserFolderFile)); !drawerState.preview.open && dispatch(setFilePreviewPanel()); } }; @@ -188,17 +209,30 @@ const FileBrowser = (props: FileBrowserProps) => { } const isPreviewing = selectedFile === item; const backgroundColor = isDarkTheme ? "#002952" : "#E7F1FA"; + const path = type === "file" ? item.data.fname : item.data.path; - icon = getIcon(iconType); + const isSelected = + selectedPaths.length > 0 && + selectedPaths.some((payload) => payload.path === path); + const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); + + icon = getIcon(iconType, isDarkTheme); const fileNameComponent = (
- {icon} - {fileName} +
); const downloadComponent = @@ -213,17 +247,27 @@ const FileBrowser = (props: FileBrowserProps) => { icon={} /> ); + return ( -
{fileNameComponent}{fsize}{downloadComponent}
{fileNameComponent}{fsize}{downloadComponent}
{fileNameComponent} + {format(new Date(item.data.creation_date), "dd MMM yyyy, HH:mm")} + {item.data.owner_username} {fsize}{downloadComponent}
- + - - - + + + + {filesLoading ? ( diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 918a7cacc..82910e64f 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -227,7 +227,7 @@ const TableSelectable: React.FC = () => { {loadingFeedState ? ( diff --git a/src/components/NewLibrary/components/Operations.css b/src/components/NewLibrary/components/Operations.css new file mode 100644 index 000000000..38ac06190 --- /dev/null +++ b/src/components/NewLibrary/components/Operations.css @@ -0,0 +1,3 @@ +.remove-toolbar-padding { + padding-top: 0 !important; +} \ No newline at end of file diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index e0bd15c36..c2ec1d0e8 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -36,6 +36,7 @@ import { MergeIcon, } from "../../Icons"; import { useFolderOperations } from "../utils/useOperations"; +import "./Operations.css"; interface AddModalProps { isOpen: boolean; @@ -54,7 +55,12 @@ interface OperationProps { inValidateFolders: () => void; computedPath?: string; folderList?: FileBrowserFolderList; - customStyle?: React.CSSProperties; + customStyle?: { + [key: string]: React.CSSProperties; + }; + customClassName?: { + [key: string]: string; + }; } export const AddModal = (props: AddModalProps) => { @@ -115,7 +121,13 @@ const items = [ ]; const Operations = React.forwardRef((props: OperationProps, ref) => { - const { inValidateFolders, computedPath, folderList, customStyle } = props; + const { + inValidateFolders, + computedPath, + folderList, + customStyle, + customClassName, + } = props; const dispatch = useDispatch(); const { modalInfo, @@ -315,8 +327,8 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { hidden onChange={handleFolderChange} /> - - + + {toolbarItems} diff --git a/src/store/resources/resourceSlice.ts b/src/store/resources/resourceSlice.ts index a5a66524f..466b55a08 100644 --- a/src/store/resources/resourceSlice.ts +++ b/src/store/resources/resourceSlice.ts @@ -40,9 +40,8 @@ const resourceSlice = createSlice({ }, getPluginInstanceStatusRequest( _state, - action: PayloadAction, + _action: PayloadAction, ) { - console.log("DIspatch Called", action); // No state mutation needed for this action }, getPluginInstanceStatusSuccess( From 4c88b0d53afbcddfdc265911a2aea244a0595799 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 19 Aug 2024 14:43:26 -0400 Subject: [PATCH 114/337] feat: Share a folder --- src/components/Feeds/FeedListView.tsx | 8 +- src/components/Icons/index.tsx | 8 +- .../NewLibrary/components/ContextMenu.tsx | 30 ++++-- .../NewLibrary/components/FileCard.tsx | 2 +- .../NewLibrary/components/FolderCard.tsx | 2 +- .../NewLibrary/components/Operations.tsx | 95 +++++++++++++++++-- .../NewLibrary/utils/useOperations.tsx | 44 ++++++++- src/routes.tsx | 9 +- 8 files changed, 175 insertions(+), 23 deletions(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 82910e64f..2c83c28e8 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -32,7 +32,7 @@ import { CreateFeedProvider } from "../CreateFeed/context"; import { ThemeContext } from "../DarkTheme/useTheme"; import { SearchIcon } from "../Icons"; import { FolderContextMenu } from "../NewLibrary/components/ContextMenu"; -import Operations from "../NewLibrary/components/Operations"; +import Operations, { ContextTypes } from "../NewLibrary/components/Operations"; import useLongPress from "../NewLibrary/utils/longpress"; import { PipelineProvider } from "../PipelinesCopy/context"; import WrapperConnect from "../Wrapper"; @@ -228,6 +228,7 @@ const TableSelectable: React.FC = () => { {loadingFeedState ? ( @@ -343,7 +344,10 @@ const TableRow: React.FC = ({ }; return ( - + { +const ShareIcon = ({ + className, + style, +}: { className?: string; style?: React.CSSProperties }) => { return ( diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index 5a2fb8ac9..204c84ff2 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -8,19 +8,22 @@ import { DownloadIcon, DuplicateIcon, MergeIcon, + ShareIcon, } from "../../Icons"; import { useFolderOperations } from "../utils/useOperations"; -import { AddModal } from "./Operations"; +import { AddModal, type ContextTypes } from "./Operations"; interface ContextMenuProps { children: React.ReactElement; computedPath?: string; inValidateFolders: () => void; folderList?: FileBrowserFolderList; + context?: ContextTypes; } export const FolderContextMenu = (props: ContextMenuProps) => { - const { children, inValidateFolders, folderList, computedPath } = props; + const { children, inValidateFolders, folderList, computedPath, context } = + props; const { modalInfo, userError, @@ -29,7 +32,7 @@ export const FolderContextMenu = (props: ContextMenuProps) => { contextHolder, setUserErrors, setModalInfo, - } = useFolderOperations(inValidateFolders, computedPath, folderList); + } = useFolderOperations(inValidateFolders, computedPath, folderList, context); const items: MenuProps["items"] = [ { key: "createFeed", label: "Create Feed", icon: }, @@ -37,6 +40,7 @@ export const FolderContextMenu = (props: ContextMenuProps) => { { key: "anonymize", label: "Anonymize", icon: }, { key: "merge", label: "Merge", icon: }, { key: "duplicate", label: "Copy", icon: }, + { key: "share", label: "Share", icon: }, { key: "delete", label: "Delete", icon: }, ]; @@ -45,17 +49,31 @@ export const FolderContextMenu = (props: ContextMenuProps) => { setModalInfo({ isOpen: false, type: "" })} - onSubmit={(inputValue) => handleModalSubmitMutation.mutate(inputValue)} + onSubmit={(inputValue, additionalValues) => + handleModalSubmitMutation.mutate({ + inputValue, + additionalValues, + }) + } modalTitle={ modalInfo.type === "group" ? "Create a new Group" - : "Create a new Folder" + : modalInfo.type === "share" + ? "Share this Folder" + : "Create a new Folder" + } + inputLabel={ + modalInfo.type === "group" + ? "Group Name" + : modalInfo.type === "share" + ? "User Name" + : "Folder Name" } - inputLabel={modalInfo.type === "group" ? "Group Name" : "Folder Name"} indicators={{ isPending: handleModalSubmitMutation.isPending, isError: handleModalSubmitMutation.isError, error: handleModalSubmitMutation.error as DefaultError, + clearErrors: () => handleModalSubmitMutation.reset(), }} /> diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index 56d118b60..5650b25db 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -191,7 +191,7 @@ export const SubFileCard: React.FC = ({ ); const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); const ext = getFileExtension(file.data.fname); - const icon = getIcon(ext); + const icon = getIcon(ext, isDarkTheme); useEffect(() => { if (handleDownloadMutation.isSuccess) { diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index d243ddcf5..46a207889 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -80,7 +80,7 @@ export const SubFolderCard: React.FC = (props) => { const feedMatches = folderName.match(/feed_(\d+)/); const { data, isLoading } = useQuery({ - queryKey: ["AssociatedFeed", folder.data.path], + queryKey: ["associatedFeed", folder.data.path], queryFn: async () => { const id = feedMatches ? feedMatches[1] : null; diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index c2ec1d0e8..15aeb22f8 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -2,6 +2,7 @@ import type { FileBrowserFolderList } from "@fnndsc/chrisapi"; import { ActionGroup, Button, + Checkbox, Chip, ChipGroup, Form, @@ -14,7 +15,6 @@ import { Tooltip, } from "@patternfly/react-core"; import type { DefaultError } from "@tanstack/react-query"; -import { Alert, Dropdown, Spin } from "../../Antd"; import React, { Fragment, useEffect, @@ -26,6 +26,7 @@ import { useDispatch } from "react-redux"; import { getFileName } from "../../../api/common"; import { removeSelectedPayload } from "../../../store/cart/cartSlice"; import { useTypedSelector } from "../../../store/hooks"; +import { Alert, Dropdown, Spin } from "../../Antd"; import { AddIcon, ArchiveIcon, @@ -34,20 +35,35 @@ import { DownloadIcon, DuplicateIcon, MergeIcon, + ShareIcon, } from "../../Icons"; import { useFolderOperations } from "../utils/useOperations"; import "./Operations.css"; +export enum ContextTypes { + feed_table = "FEEDS_TABLE", + library_page = "LIBRARY_PAGE", + filebrowser_table = "FILEBROWSER_TABLE", +} + +export type AdditionalValues = { + share: { + read?: boolean; + write?: boolean; + }; +}; + interface AddModalProps { isOpen: boolean; onClose: () => void; - onSubmit: (inputValue: string) => void; + onSubmit: (inputValue: string, additionalValues?: AdditionalValues) => void; modalTitle: string; inputLabel: string; indicators: { isPending: boolean; isError: boolean; error: DefaultError | null; + clearErrors: () => void; }; } @@ -61,12 +77,19 @@ interface OperationProps { customClassName?: { [key: string]: string; }; + context?: ContextTypes; } export const AddModal = (props: AddModalProps) => { const { isOpen, onClose, onSubmit, modalTitle, inputLabel, indicators } = props; const [inputValue, setInputValue] = useState(""); + const [additionalValues, setAdditionalValues] = useState({ + share: { + read: false, + write: true, + }, + }); const handleClose = () => { setInputValue(""); @@ -97,6 +120,36 @@ export const AddModal = (props: AddModalProps) => { placeholder={inputLabel} /> + + { + setAdditionalValues({ + ...additionalValues, + share: { + ...additionalValues?.share, + read: checked, + }, + }); + }} + /> + { + setAdditionalValues({ + ...additionalValues, + share: { + ...additionalValues?.share, + write: checked, + }, + }); + }} + /> + } @@ -107,7 +160,12 @@ export const AddModal = (props: AddModalProps) => { {indicators.isError && ( - + )} @@ -127,7 +185,9 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { folderList, customStyle, customClassName, + context, } = props; + const dispatch = useDispatch(); const { modalInfo, @@ -141,7 +201,7 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { contextHolder, setUserErrors, setModalInfo, - } = useFolderOperations(inValidateFolders, computedPath, folderList); + } = useFolderOperations(inValidateFolders, computedPath, folderList, context); useImperativeHandle(ref, () => ({ triggerFileUpload: () => { @@ -259,6 +319,13 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { "Copy selected items", )} + + {renderOperationButton( + , + "share", + "Share selected items", + )} + {renderOperationButton( , @@ -298,17 +365,31 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { setModalInfo({ isOpen: false, type: "" })} - onSubmit={(inputValue) => handleModalSubmitMutation.mutate(inputValue)} + onSubmit={(inputValue, additionalValues) => + handleModalSubmitMutation.mutate({ + inputValue, + additionalValues, + }) + } modalTitle={ modalInfo.type === "group" ? "Create a new Group" - : "Create a new Folder" + : modalInfo.type === "share" + ? "Share this Folder" + : "Create a new Folder" + } + inputLabel={ + modalInfo.type === "group" + ? "Group Name" + : modalInfo.type === "share" + ? "User Name" + : "Folder Name" } - inputLabel={modalInfo.type === "group" ? "Group Name" : "Folder Name"} indicators={{ isPending: handleModalSubmitMutation.isPending, isError: handleModalSubmitMutation.isError, error: handleModalSubmitMutation.error as DefaultError, + clearErrors: () => handleModalSubmitMutation.reset(), }} />
+
+ index + }`} + className="result-grid" + >
); } return ( + index + }`} title={`No results found for : ${result.args.PatientID} ${result.args.PatientName} ${result.args.AccessionNumber}`} /> ); diff --git a/src/components/PipelinesCopy/index.tsx b/src/components/PipelinesCopy/index.tsx index a7da63cea..93996e23b 100644 --- a/src/components/PipelinesCopy/index.tsx +++ b/src/components/PipelinesCopy/index.tsx @@ -70,7 +70,7 @@ const PipelinesCopy = () => { }; const fetchPipelinesAgain = () => { - queryClient.invalidateQueries({ + queryClient.refetchQueries({ queryKey: ["pipelines"], }); }; diff --git a/src/components/PipelinesPage/index.tsx b/src/components/PipelinesPage/index.tsx index 35d1ea48c..97abadbf4 100644 --- a/src/components/PipelinesPage/index.tsx +++ b/src/components/PipelinesPage/index.tsx @@ -1,21 +1,14 @@ import React from "react"; -import { useDispatch } from "react-redux"; import { PipelineProvider } from "../PipelinesCopy/context"; import Pipelines from "../PipelinesCopy"; import WrapperConnect from "../Wrapper"; -import { setSidebarActive } from "../../store/ui/uiSlice"; + import { PageSection } from "@patternfly/react-core"; const PipelinePage = () => { - const dispatch = useDispatch(); React.useEffect(() => { document.title = "Pipelines Catalog"; - dispatch( - setSidebarActive({ - activeItem: "pipelines", - }), - ); - }); + }, []); return ( diff --git a/src/components/PluginCatalog/index.tsx b/src/components/PluginCatalog/index.tsx index 1a0a8ee0f..68b22c2fd 100644 --- a/src/components/PluginCatalog/index.tsx +++ b/src/components/PluginCatalog/index.tsx @@ -1,26 +1,17 @@ import React from "react"; -import { useDispatch } from "react-redux"; import { Typography } from "../Antd"; import WrapperConnect from "../Wrapper"; import PluginCatalog from "./PluginCatalog"; import { InfoIcon } from "../Common/"; -import { setSidebarActive } from "../../store/ui/uiSlice"; import { PageSection } from "@patternfly/react-core"; import "./plugin-catalog.css"; const { Paragraph } = Typography; const CatalogPage = () => { - const dispatch = useDispatch(); - React.useEffect(() => { document.title = "Analysis Catalog"; - dispatch( - setSidebarActive({ - activeItem: "catalog", - }), - ); - }); + }, []); return ( diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index 305a35a19..3c30f971a 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -27,15 +27,13 @@ import { TextVariants, } from "@patternfly/react-core"; import { useMutation, useQuery, useQueryClient } from "@tanstack/react-query"; -import { Alert, Spin, Typography, notification } from "../Antd"; import { format } from "date-fns"; import { isEmpty } from "lodash"; import { type Ref, useEffect, useState } from "react"; import { Cookies, useCookies } from "react-cookie"; -import { useDispatch } from "react-redux"; +import { Alert, Spin, Typography, notification } from "../Antd"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useTypedSelector } from "../../store/hooks"; -import { setSidebarActive } from "../../store/ui/uiSlice"; import { InfoIcon, SpinContainer } from "../Common"; import { CheckCircleIcon, SearchIcon } from "../Icons"; import "../SinglePlugin/singlePlugin.css"; @@ -51,11 +49,10 @@ const { Paragraph } = Typography; const Store = () => { const isStaff = useTypedSelector((state) => state.user.isStaff); - const queryClient = useQueryClient(); const [_cookie, setCookie, removeCookie] = useCookies(); const [api, contextHolder] = notification.useNotification(); - const dispatch = useDispatch(); + const [version, setVersion] = useState<{ [key: string]: any; }>({}); @@ -74,12 +71,7 @@ const Store = () => { useEffect(() => { document.title = "Store Catalog"; - dispatch( - setSidebarActive({ - activeItem: "store", - }), - ); - }, [dispatch]); + }, []); useEffect(() => { const cookies = new Cookies(); @@ -316,7 +308,7 @@ const Store = () => { }); setConfigureStoreValue(configureStoreValue); setConfigureStore(!configureStore); - queryClient.resetQueries({ + queryClient.refetchQueries({ queryKey: ["storePlugins"], }); }} @@ -368,7 +360,7 @@ const Store = () => { removeCookie("configure_url", { path: "/", }); - queryClient.resetQueries({ + queryClient.refetchQueries({ queryKey: ["storePlugins"], }); } else { diff --git a/src/components/Wrapper/Sidebar.tsx b/src/components/Wrapper/Sidebar.tsx index de9bde0a8..aee7ace62 100644 --- a/src/components/Wrapper/Sidebar.tsx +++ b/src/components/Wrapper/Sidebar.tsx @@ -6,33 +6,39 @@ import { PageSidebar, PageSidebarBody, } from "@patternfly/react-core"; +import { useQueryClient } from "@tanstack/react-query"; import { isEmpty } from "lodash"; import type * as React from "react"; import { Link } from "react-router-dom"; import { useTypedSelector } from "../../store/hooks"; import type { IUiState } from "../../store/ui/uiSlice"; -import { setSidebarActive } from "../../store/ui/uiSlice"; import type { IUserState } from "../../store/user/userSlice"; -import { useDispatch } from "react-redux"; type AllProps = IUiState & IUserState; const Sidebar: React.FC = () => { + const queryClient = useQueryClient(); const { sidebarActiveItem, isNavOpen } = useTypedSelector( (state) => state.ui, ); const isLoggedIn = useTypedSelector((state) => state.user.isLoggedIn); - const dispatch = useDispatch(); - const onSelect = (selectedItem: any) => { + const urlParam = isLoggedIn ? "private" : "public"; + + const onSelect = ( + _event: React.FormEvent, + selectedItem: any, + ) => { const { itemId } = selectedItem; - if (sidebarActiveItem !== itemId) { - dispatch(setSidebarActive({ activeItem: itemId })); + // Invalidate feeds if "analyses" is selected + if (itemId === "analyses") { + const queryKey = isLoggedIn ? "feeds" : "publicFeeds"; + queryClient.refetchQueries({ + queryKey: [queryKey], // This assumes your query key for feeds is ["feeds"] + }); } }; - const urlParam = isLoggedIn ? "private" : "public"; - const renderLink = (to: string, label: string, itemId: string) => sidebarActiveItem === itemId && sidebarActiveItem !== "analyses" ? ( {label} diff --git a/src/components/Wrapper/index.tsx b/src/components/Wrapper/index.tsx index e44c5db76..68b92d932 100644 --- a/src/components/Wrapper/index.tsx +++ b/src/components/Wrapper/index.tsx @@ -8,7 +8,7 @@ import "./wrapper.css"; import { setIsNavOpen } from "../../store/ui/uiSlice"; type WrapperProps = { - children: React.ReactElement[]; + children: React.ReactElement[] | React.ReactElement; }; const Wrapper = (props: WrapperProps) => { diff --git a/src/routes.tsx b/src/routes.tsx index 783dfbac3..512d489a1 100644 --- a/src/routes.tsx +++ b/src/routes.tsx @@ -1,5 +1,5 @@ import * as React from "react"; -import { useNavigate, useRoutes } from "react-router-dom"; +import { useNavigate, useRoutes, matchPath } from "react-router-dom"; import ComputePage from "./components/ComputePage"; import Dashboard from "./components/Dashboard"; import DatasetRedirect from "./components/DatasetRedirect"; @@ -22,6 +22,8 @@ import Signup from "./components/Signup"; import SinglePlugin from "./components/SinglePlugin"; import Store from "./components/Store"; import { useTypedSelector } from "./store/hooks"; +import { useDispatch } from "react-redux"; +import { setSidebarActive } from "./store/ui/uiSlice"; interface IState { selectData?: Series; @@ -41,6 +43,7 @@ export const [State, MainRouterContext] = RouterContext({ }); export const MainRouter: React.FC = () => { + const dispatch = useDispatch(); const [state, setState] = React.useState(State); const [route, setRoute] = React.useState(); const navigate = useNavigate(); @@ -60,6 +63,55 @@ export const MainRouter: React.FC = () => { }, }; + // Define the routes and their corresponding sidebar items + const routeToSidebarItem: Record = { + "/": "overview", + "library/*": "lib", + "feeds/*": "analyses", + "feeds/:id": "analyses", + "plugin/:id": "catalog", + pacs: "pacs", + login: "login", + signup: "signup", + pipelines: "pipelines", + catalog: "catalog", + compute: "compute", + "dataset/:feedName?": "dataset", + "niivue/:plinstId": "niivue", + store: "store", + "install/*": "install", + "*": "notFound", + }; + + const matchRoute = (path: string) => { + const normalizedPath = path.startsWith("/") ? path.slice(1) : path; + + // Exact match first + if (routeToSidebarItem[normalizedPath]) { + return routeToSidebarItem[normalizedPath]; + } + + // Wildcard match + for (const routePath of Object.keys(routeToSidebarItem)) { + if (matchPath({ path: routePath, end: true }, path)) { + return routeToSidebarItem[routePath]; + } + } + + // Default to notFound if no match + return routeToSidebarItem["*"]; + }; + // Update the active sidebar item based on the current route + React.useEffect(() => { + const currentPath = location.pathname; + const sidebarItem = matchRoute(currentPath); + dispatch( + setSidebarActive({ + activeItem: sidebarItem, + }), + ); + }, [location.pathname, dispatch]); + const element = useRoutes([ { path: "/", diff --git a/src/store/cart/types.ts b/src/store/cart/types.ts index 3d1b78cfa..f1841022d 100644 --- a/src/store/cart/types.ts +++ b/src/store/cart/types.ts @@ -2,12 +2,18 @@ import type { Feed, FileBrowserFolder, FileBrowserFolderFile, + FileBrowserFolderLinkFile, } from "@fnndsc/chrisapi"; +export type PayloadTypes = + | FileBrowserFolder + | FileBrowserFolderFile + | FileBrowserFolderLinkFile; + export interface SelectionPayload { path: string; type: string; - payload: FileBrowserFolderFile | FileBrowserFolder; + payload: PayloadTypes; } export type FolderUploadObject = { From 74a93f656d30b76635ea1fe1de7475f4243d13c6 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Tue, 20 Aug 2024 15:08:37 -0400 Subject: [PATCH 117/337] feat: Cleanup --- package-lock.json | 150 +++++++++++++++++- package.json | 2 +- .../components/BreadcrumbContainer.tsx | 26 +-- .../NewLibrary/utils/useDeletePayload.tsx | 42 +++-- .../NewLibrary/utils/useFeedOperations.tsx | 8 +- 5 files changed, 183 insertions(+), 45 deletions(-) diff --git a/package-lock.json b/package-lock.json index c6c051039..c5faa2e6e 100644 --- a/package-lock.json +++ b/package-lock.json @@ -25,7 +25,7 @@ "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", "@types/d3-zoom": "^3.0.8", - "antd": "^5.20.1", + "antd": "^5.20.2", "axios": "^1.7.2", "d3-hierarchy": "^1.1.9", "d3-selection": "^3.0.0", @@ -110,6 +110,8 @@ }, "node_modules/@ant-design/colors": { "version": "7.1.0", + "resolved": "https://registry.npmjs.org/@ant-design/colors/-/colors-7.1.0.tgz", + "integrity": "sha512-MMoDGWn1y9LdQJQSHiCC20x3uZ3CwQnv9QMz6pCmJOrqdgM9YxsoVVY0wtrdXbmfSgnV0KNk6zi09NAhMR2jvg==", "license": "MIT", "dependencies": { "@ctrl/tinycolor": "^3.6.1" @@ -117,6 +119,8 @@ }, "node_modules/@ant-design/cssinjs": { "version": "1.21.0", + "resolved": "https://registry.npmjs.org/@ant-design/cssinjs/-/cssinjs-1.21.0.tgz", + "integrity": "sha512-gIilraPl+9EoKdYxnupxjHB/Q6IHNRjEXszKbDxZdsgv4sAZ9pjkCq8yanDWNvyfjp4leir2OVAJm0vxwKK8YA==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.11.1", @@ -134,6 +138,8 @@ }, "node_modules/@ant-design/cssinjs-utils": { "version": "1.0.3", + "resolved": "https://registry.npmjs.org/@ant-design/cssinjs-utils/-/cssinjs-utils-1.0.3.tgz", + "integrity": "sha512-BrztZZKuoYcJK8uEH40ylBemf/Mu/QPiDos56g2bv6eUoniQkgQHOCOvA3+pncoFO1TaS8xcUCIqGzDA0I+ZVQ==", "license": "MIT", "dependencies": { "@ant-design/cssinjs": "^1.21.0", @@ -147,6 +153,8 @@ }, "node_modules/@ant-design/cssinjs-utils/node_modules/@babel/runtime": { "version": "7.25.0", + "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.0.tgz", + "integrity": "sha512-7dRy4DwXwtzBrPbZflqxnvfxLF8kdZXPkhymtDeFoFqE6ldzjQFgYTtYIFARcLEYDrqfBfYcZt1WqFxRoyC9Rw==", "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" @@ -157,6 +165,8 @@ }, "node_modules/@ant-design/fast-color": { "version": "2.0.6", + "resolved": "https://registry.npmjs.org/@ant-design/fast-color/-/fast-color-2.0.6.tgz", + "integrity": "sha512-y2217gk4NqL35giHl72o6Zzqji9O7vHh9YmhUVkPtAOpoTCH4uWxo/pr4VE8t0+ChEPs0qo4eJRC5Q1eXWo3vA==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.24.7" @@ -167,6 +177,8 @@ }, "node_modules/@ant-design/fast-color/node_modules/@babel/runtime": { "version": "7.25.0", + "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.0.tgz", + "integrity": "sha512-7dRy4DwXwtzBrPbZflqxnvfxLF8kdZXPkhymtDeFoFqE6ldzjQFgYTtYIFARcLEYDrqfBfYcZt1WqFxRoyC9Rw==", "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" @@ -177,6 +189,8 @@ }, "node_modules/@ant-design/icons": { "version": "5.4.0", + "resolved": "https://registry.npmjs.org/@ant-design/icons/-/icons-5.4.0.tgz", + "integrity": "sha512-QZbWC5xQYexCI5q4/fehSEkchJr5UGtvAJweT743qKUQQGs9IH2DehNLP49DJ3Ii9m9CijD2HN6fNy3WKhIFdA==", "license": "MIT", "dependencies": { "@ant-design/colors": "^7.0.0", @@ -195,10 +209,14 @@ }, "node_modules/@ant-design/icons-svg": { "version": "4.4.2", + "resolved": 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"node_modules/rc-input-number": { "version": "9.2.0", + "resolved": "https://registry.npmjs.org/rc-input-number/-/rc-input-number-9.2.0.tgz", + "integrity": "sha512-5XZFhBCV5f9UQ62AZ2hFbEY8iZT/dm23Q1kAg0H8EvOgD3UDbYYJAayoVIkM3lQaCqYAW5gV0yV3vjw1XtzWHg==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9054,6 +9140,8 @@ }, "node_modules/rc-mentions": { "version": "2.15.0", + "resolved": "https://registry.npmjs.org/rc-mentions/-/rc-mentions-2.15.0.tgz", + "integrity": "sha512-f5v5i7VdqvBDXbphoqcQWmXDif2Msd2arritVoWybrVDuHE6nQ7XCYsybHbV//WylooK52BFDouFvyaRDtXZEw==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.22.5", @@ -9071,6 +9159,8 @@ }, "node_modules/rc-menu": { "version": "9.14.1", + "resolved": "https://registry.npmjs.org/rc-menu/-/rc-menu-9.14.1.tgz", + "integrity": "sha512-5wlRb3M8S4yGlWhSoEYJ7ZVRElyScdcpUHxgiLxkeig1tEdyKrnED3B2fhpN0Rrpdp9jyhnmZR/Lwq2fH5VvDQ==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9100,6 +9190,8 @@ }, "node_modules/rc-notification": { "version": "5.6.0", + "resolved": "https://registry.npmjs.org/rc-notification/-/rc-notification-5.6.0.tgz", + "integrity": "sha512-TGQW5T7waOxLwgJG7fXcw8l7AQiFOjaZ7ISF5PrU526nunHRNcTMuzKihQHaF4E/h/KfOCDk3Mv8eqzbu2e28w==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9117,6 +9209,8 @@ }, "node_modules/rc-overflow": { "version": "1.3.2", + "resolved": "https://registry.npmjs.org/rc-overflow/-/rc-overflow-1.3.2.tgz", + "integrity": "sha512-nsUm78jkYAoPygDAcGZeC2VwIg/IBGSodtOY3pMof4W3M9qRJgqaDYm03ZayHlde3I6ipliAxbN0RUcGf5KOzw==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.11.1", @@ -9131,6 +9225,8 @@ }, "node_modules/rc-pagination": { "version": "4.2.0", + "resolved": "https://registry.npmjs.org/rc-pagination/-/rc-pagination-4.2.0.tgz", + "integrity": "sha512-V6qeANJsT6tmOcZ4XiUmj8JXjRLbkusuufpuoBw2GiAn94fIixYjFLmbruD1Sbhn8fPLDnWawPp4CN37zQorvw==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9144,6 +9240,8 @@ }, "node_modules/rc-picker": { "version": "4.6.13", + "resolved": "https://registry.npmjs.org/rc-picker/-/rc-picker-4.6.13.tgz", + "integrity": "sha512-yi4JWPGjm420Q8rHjZ6YNy2c5IfV+9EAzx2pewVRPOjJqfg7uifO/Z0uqxdl/h6AhBocuvRvtlyz6ehrAvTq7A==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.24.7", @@ -9181,6 +9279,8 @@ }, "node_modules/rc-picker/node_modules/@babel/runtime": { "version": "7.25.0", + "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.0.tgz", + "integrity": "sha512-7dRy4DwXwtzBrPbZflqxnvfxLF8kdZXPkhymtDeFoFqE6ldzjQFgYTtYIFARcLEYDrqfBfYcZt1WqFxRoyC9Rw==", "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" @@ -9191,6 +9291,8 @@ }, "node_modules/rc-progress": { "version": "4.0.0", + "resolved": "https://registry.npmjs.org/rc-progress/-/rc-progress-4.0.0.tgz", + "integrity": "sha512-oofVMMafOCokIUIBnZLNcOZFsABaUw8PPrf1/y0ZBvKZNpOiu5h4AO9vv11Sw0p4Hb3D0yGWuEattcQGtNJ/aw==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9204,6 +9306,8 @@ }, "node_modules/rc-rate": { "version": "2.13.0", + "resolved": "https://registry.npmjs.org/rc-rate/-/rc-rate-2.13.0.tgz", + "integrity": "sha512-oxvx1Q5k5wD30sjN5tqAyWTvJfLNNJn7Oq3IeS4HxWfAiC4BOXMITNAsw7u/fzdtO4MS8Ki8uRLOzcnEuoQiAw==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9234,6 +9338,8 @@ }, "node_modules/rc-segmented": { "version": "2.3.0", + "resolved": "https://registry.npmjs.org/rc-segmented/-/rc-segmented-2.3.0.tgz", + "integrity": "sha512-I3FtM5Smua/ESXutFfb8gJ8ZPcvFR+qUgeeGFQHBOvRiRKyAk4aBE5nfqrxXx+h8/vn60DQjOt6i4RNtrbOobg==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.11.1", @@ -9248,6 +9354,8 @@ }, "node_modules/rc-select": { "version": "14.15.1", + "resolved": "https://registry.npmjs.org/rc-select/-/rc-select-14.15.1.tgz", + "integrity": "sha512-mGvuwW1RMm1NCSI8ZUoRoLRK51R2Nb+QJnmiAvbDRcjh2//ulCkxeV6ZRFTECPpE1t2DPfyqZMPw90SVJzQ7wQ==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9268,6 +9376,8 @@ }, "node_modules/rc-slider": { "version": "11.1.5", + "resolved": "https://registry.npmjs.org/rc-slider/-/rc-slider-11.1.5.tgz", + "integrity": "sha512-b77H5PbjMKsvkYXAYIkn50QuFX6ICQmCTibDinI9q+BHx65/TV4TeU25+oadhSRzykxs0/vBWeKBwRyySOeWlg==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9284,6 +9394,8 @@ }, "node_modules/rc-steps": { "version": "6.0.1", + "resolved": "https://registry.npmjs.org/rc-steps/-/rc-steps-6.0.1.tgz", + "integrity": "sha512-lKHL+Sny0SeHkQKKDJlAjV5oZ8DwCdS2hFhAkIjuQt1/pB81M0cA0ErVFdHq9+jmPmFw1vJB2F5NBzFXLJxV+g==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.16.7", @@ -9300,6 +9412,8 @@ }, "node_modules/rc-switch": { "version": "4.1.0", + "resolved": "https://registry.npmjs.org/rc-switch/-/rc-switch-4.1.0.tgz", + "integrity": "sha512-TI8ufP2Az9oEbvyCeVE4+90PDSljGyuwix3fV58p7HV2o4wBnVToEyomJRVyTaZeqNPAp+vqeo4Wnj5u0ZZQBg==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.21.0", @@ -9313,6 +9427,8 @@ }, "node_modules/rc-table": { "version": "7.45.7", + "resolved": "https://registry.npmjs.org/rc-table/-/rc-table-7.45.7.tgz", + "integrity": "sha512-wi9LetBL1t1csxyGkMB2p3mCiMt+NDexMlPbXHvQFmBBAsMxrgNSAPwUci2zDLUq9m8QdWc1Nh8suvrpy9mXrg==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9332,6 +9448,8 @@ }, "node_modules/rc-tabs": { "version": "15.1.1", + "resolved": "https://registry.npmjs.org/rc-tabs/-/rc-tabs-15.1.1.tgz", + "integrity": "sha512-Tc7bJvpEdkWIVCUL7yQrMNBJY3j44NcyWS48jF/UKMXuUlzaXK+Z/pEL5LjGcTadtPvVmNqA40yv7hmr+tCOAw==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.11.2", @@ -9352,6 +9470,8 @@ }, "node_modules/rc-textarea": { "version": "1.8.1", + "resolved": "https://registry.npmjs.org/rc-textarea/-/rc-textarea-1.8.1.tgz", + "integrity": "sha512-bm36N2ZqwZAP60ZQg2OY9mPdqWC+m6UTjHc+CqEZOxb3Ia29BGHazY/s5bI8M4113CkqTzhtFUDNA078ZiOx3Q==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9367,6 +9487,8 @@ }, "node_modules/rc-tooltip": { "version": "6.2.0", + "resolved": "https://registry.npmjs.org/rc-tooltip/-/rc-tooltip-6.2.0.tgz", + "integrity": "sha512-iS/3iOAvtDh9GIx1ulY7EFUXUtktFccNLsARo3NPgLf0QW9oT0w3dA9cYWlhqAKmD+uriEwdWz1kH0Qs4zk2Aw==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.11.2", @@ -9398,6 +9520,8 @@ }, "node_modules/rc-tree-select": { "version": "5.22.1", + "resolved": "https://registry.npmjs.org/rc-tree-select/-/rc-tree-select-5.22.1.tgz", + "integrity": "sha512-b8mAK52xEpRgS+b2PTapCt29GoIrO5cO8jB7AfHttFsIJfcnynY9FCtnYzURsKXJkGHbFY6UzSEB2I3TETtdWg==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.10.1", @@ -9412,7 +9536,9 @@ } }, "node_modules/rc-upload": { - "version": "4.6.0", + "version": "4.7.0", + "resolved": "https://registry.npmjs.org/rc-upload/-/rc-upload-4.7.0.tgz", + "integrity": "sha512-eUwxYNHlsYe5vYhKFAUGrQG95JrnPzY+BmPi1Daq39fWNl/eOc7v4UODuWrVp2LFkQBuV3cMCG/I68iub6oBrg==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.18.3", @@ -10508,6 +10634,8 @@ }, "node_modules/string-convert": { "version": "0.2.1", + "resolved": "https://registry.npmjs.org/string-convert/-/string-convert-0.2.1.tgz", + "integrity": "sha512-u/1tdPl4yQnPBjnVrmdLo9gtuLvELKsAoRapekWggdiQNvvvum+jYF329d84NAa660KQw7pB2n36KrIKVoXa3A==", "license": "MIT" }, "node_modules/string-range": { @@ -10576,6 +10704,8 @@ }, "node_modules/stylis": { "version": "4.3.2", + "resolved": "https://registry.npmjs.org/stylis/-/stylis-4.3.2.tgz", + "integrity": "sha512-bhtUjWd/z6ltJiQwg0dUfxEJ+W+jdqQd8TbWLWyeIJHlnsqmGLRFFd8e5mA0AZi/zx90smXRlN66YMTcaSFifg==", "license": "MIT" }, "node_modules/supports-color": { @@ -10621,6 +10751,8 @@ }, "node_modules/throttle-debounce": { "version": "5.0.2", + "resolved": "https://registry.npmjs.org/throttle-debounce/-/throttle-debounce-5.0.2.tgz", + "integrity": "sha512-B71/4oyj61iNH0KeCamLuE2rmKuTO5byTOSVwECM5FA7TiAiAW+UqTKZ9ERueC4qvgSttUhdmq1mXC3kJqGX7A==", "license": "MIT", "engines": { "node": ">=12.22" @@ -10675,6 +10807,8 @@ }, "node_modules/toggle-selection": { "version": "1.0.6", + "resolved": "https://registry.npmjs.org/toggle-selection/-/toggle-selection-1.0.6.tgz", + "integrity": "sha512-BiZS+C1OS8g/q2RRbJmy59xpyghNBqrr6k5L/uKBGRsTfxmu3ffiRnd8mlGPUVayg8pvfi5urfnu8TU7DVOkLQ==", "license": "MIT" }, "node_modules/totalist": { diff --git a/package.json b/package.json index 817d292ab..ec60172ec 100644 --- a/package.json +++ b/package.json @@ -41,7 +41,7 @@ "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", "@types/d3-zoom": "^3.0.8", - "antd": "^5.20.1", + "antd": "^5.20.2", "axios": "^1.7.2", "d3-hierarchy": "^1.1.9", "d3-selection": "^3.0.0", diff --git a/src/components/NewLibrary/components/BreadcrumbContainer.tsx b/src/components/NewLibrary/components/BreadcrumbContainer.tsx index 47b92b1d4..c4a49727e 100644 --- a/src/components/NewLibrary/components/BreadcrumbContainer.tsx +++ b/src/components/NewLibrary/components/BreadcrumbContainer.tsx @@ -38,6 +38,20 @@ const BreadcrumbContainer = ({ style={{ paddingTop: "0", paddingLeft: "0", paddingBottom: "0" }} > + + {showHomeButton && ( + + -
{!isEmpty(date) ? new Date(date).toDateString() : ""}
+ +
+
+ {!isEmpty(date) + ? format(new Date(date), "dd MMM yyyy, HH:mm") + : "N/A"} +
+
@@ -164,6 +177,12 @@ type SubFileCardProps = { computedPath: string; }; +export const getFileName = ( + file: FileBrowserFolderFile | FileBrowserFolderLinkFile, +) => { + return file.data.fname.split("/").pop() || ""; +}; + export const SubFileCard: React.FC = ({ file, computedPath, @@ -175,8 +194,7 @@ export const SubFileCard: React.FC = ({ const { handlers } = useLongPress(); const [api, contextHolder] = notification.useNotification(); const [preview, setIsPreview] = useState(false); - - const fileName = file.data.fname.split("/").pop() || ""; + const fileName = getFileName(file); const isSelected = selectedPaths.some( (payload) => payload.path === file.data.fname, ); @@ -254,6 +272,10 @@ type SubLinkCardProps = { computedPath: string; }; +export const getLinkFileName = (file: FileBrowserFolderLinkFile) => { + return file.data.path.split("/").pop() || ""; +}; + export const SubLinkCard: React.FC = ({ linkFile, computedPath, @@ -266,7 +288,7 @@ export const SubLinkCard: React.FC = ({ const { handlers } = useLongPress(); const [api, contextHolder] = notification.useNotification(); - const linkName = linkFile.data.path.split("/").pop() || ""; + const linkName = getLinkFileName(linkFile); const isSelected = selectedPaths.some( (payload) => payload.path === linkFile.data.path, ); diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index 2a0122334..c4c2a0a74 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -9,6 +9,8 @@ import { SplitItem, } from "@patternfly/react-core"; import { useQuery, useQueryClient } from "@tanstack/react-query"; +import { format } from "date-fns"; +import { isEmpty } from "lodash"; import { useContext } from "react"; import { Fragment } from "react/jsx-runtime"; import ChrisAPIClient from "../../../api/chrisapiclient"; @@ -56,6 +58,13 @@ interface SubFolderCardProps { handleFolderClick: (path: string) => void; } +export function getFolderName(folder: FileBrowserFolder, computedPath: string) { + const folderPathParts = folder.data.path.split("/"); + const pathName = folderPathParts[folderPathParts.length - 1]; + const folderName = computedPath === "/" ? folder.data.path : pathName; + return folderName; +} + export const SubFolderCard: React.FC = (props) => { const { folder, computedPath, handleFolderClick } = props; const queryClient = useQueryClient(); @@ -63,10 +72,8 @@ export const SubFolderCard: React.FC = (props) => { const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); const { handleOnClick, handleOnMouseDown, handleCheckboxChange } = handlers; + const folderName = getFolderName(folder, computedPath); - const folderPathParts = folder.data.path.split("/"); - const pathName = folderPathParts[folderPathParts.length - 1]; - const folderName = computedPath === "/" ? folder.data.path : pathName; const creationDate = folder.data.creation_date; const isSelected = selectedPaths.some( @@ -152,7 +159,15 @@ export const SubFolderCard: React.FC = (props) => { ? elipses(data, 40) : "Fetching..."} -
{new Date(creationDate).toDateString()}
+
+ {!isEmpty(creationDate) + ? format(new Date(creationDate), "dd MMM yyyy, HH:mm") + : "N/A"} +
diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx new file mode 100644 index 000000000..0c75a29a0 --- /dev/null +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -0,0 +1,105 @@ +import React from "react"; +import { + Table, + Caption, + Thead, + Tr, + Th, + Tbody, + Td, +} from "@patternfly/react-table"; +import type { + FileBrowserFolder, + FileBrowserFolderFile, + FileBrowserFolderLinkFile, +} from "@fnndsc/chrisapi"; +import { getFolderName } from "./FolderCard"; +import { getFileName, getLinkFileName } from "./FileCard"; + +interface TableProps { + data: { + folders: FileBrowserFolder[]; + files: FileBrowserFolderFile[]; + linkFiles: FileBrowserFolderLinkFile[]; + }; + computedPath: string; +} + +const LibraryTable: React.FunctionComponent = ( + props: TableProps, +) => { + // In real usage, this data would come from some external source like an API via props. + + const { data, computedPath } = props; + + const columnNames = { + name: "Name", + date: "Date", + owner: "Owner", + size: "Size", + }; + + return ( + +
{columnNames.name}{columnNames.size}{columnNames.download}{columnNames.name}{columnNames.created}{columnNames.creator}{columnNames.size}
+ + + + + + + + + + + {data.folders.map((resource: FileBrowserFolder) => { + const folderName = getFolderName(resource, computedPath); + return ( + + + + + + + ); + })} + {data.files.map((resource) => { + const fileName = getFileName(resource); + return ( + + + + + + + ); + })} + + {data.linkFiles.map((resource) => { + const fileName = getLinkFileName(resource); + return ( + + + + + + + ); + })} + +
Data Library
{columnNames.name}{columnNames.date}{columnNames.owner}{columnNames.size}
{folderName} + {resource.data.creation_date} + N/ASize
{fileName} + {resource.data.creation_date} + + {resource.data.owner_username} + {resource.data.fsize}
{fileName} + {resource.data.creation_date} + + {resource.data.owner_username} + {resource.data.fsize}
+ + ); +}; + +export default LibraryTable; diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 074c2ea06..52cabec50 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -39,6 +39,8 @@ import { } from "../../Icons"; import { useFolderOperations } from "../utils/useOperations"; import "./Operations.css"; +import Client from "@fnndsc/chrisapi"; +import ChrisAPIClient from "../../../api/chrisapiclient"; export enum ContextTypes { feed_table = "FEEDS_TABLE", @@ -104,6 +106,13 @@ export const AddModal = (props: AddModalProps) => { onClose(); }; + useEffect(() => { + async function fetchUsers() {} + if (modalTitle === "Share this Folder") { + fetchUsers(); + } + }, [modalTitle]); + return ( { )} {data ? ( - - - - - {fetchMore && !isLoading && ( - - )} -
+ + + + + {fetchMore && !isLoading && ( + + )} +
+ + - + ) : ( )} diff --git a/src/components/NewLibrary/utils/useDeletePayload.tsx b/src/components/NewLibrary/utils/useDeletePayload.tsx index c2f2c88a6..b0a7f957e 100644 --- a/src/components/NewLibrary/utils/useDeletePayload.tsx +++ b/src/components/NewLibrary/utils/useDeletePayload.tsx @@ -33,7 +33,9 @@ const useDeletePayload = (inValidateFolders: () => void, api: any) => { if (axios.isAxiosError(e)) { const error_message = e.response?.data.non_field_errors ? e.response.data.non_field_errors[0] - : e.message; + : e.response?.data.detail + ? e.response?.data.detail + : e.message; errors.push({ path: path.path, message: error_message }); } diff --git a/src/components/NewLibrary/utils/useFeedOperations.tsx b/src/components/NewLibrary/utils/useFeedOperations.tsx index bec498305..5375c9cf5 100644 --- a/src/components/NewLibrary/utils/useFeedOperations.tsx +++ b/src/components/NewLibrary/utils/useFeedOperations.tsx @@ -19,7 +19,6 @@ const useFeedOperations = (inValidateFolders: () => void, api: any) => { const feedList = await Promise.all( paths.map(async (path) => { // cube does not accept forward slashes in the feed name - const filePath = getFileName(path); const idMatch = filePath.match(/feed_(\d+)/); const id = idMatch ? idMatch[1] : null; @@ -32,7 +31,6 @@ const useFeedOperations = (inValidateFolders: () => void, api: any) => { pathToFeed = feed.data.name; } } - const { feed } = await createFeed([path], `Copy of ${pathToFeed}`); return feed; }), From 4508fa4360e2faf92bcbaac40a08ba9795b94036 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Tue, 20 Aug 2024 17:19:25 -0400 Subject: [PATCH 120/337] feat: remove unused code --- src/components/Feeds/FeedListView.tsx | 1 - 1 file changed, 1 deletion(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 9744597d8..eff12ff68 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -20,7 +20,6 @@ import { useQuery, useQueryClient } from "@tanstack/react-query"; import { format } from "date-fns"; import type React from "react"; import { useContext, useEffect, useState } from "react"; -import { useDispatch } from "react-redux"; import { useNavigate } from "react-router"; import { useTypedSelector } from "../../store/hooks"; import { AddNodeProvider } from "../AddNode/context"; From edfae8bce02786ff941c0f5a08a117fb06f3e3e2 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 21 Aug 2024 13:14:29 -0400 Subject: [PATCH 121/337] feat: Implement a grid and list layout options in the Library table --- src/components/Common/index.tsx | 44 +++- .../FeedOutputBrowser/FileBrowser.tsx | 3 + src/components/Icons/index.tsx | 4 + .../components/BreadcrumbContainer.tsx | 9 +- src/components/NewLibrary/components/Cart.tsx | 2 +- .../NewLibrary/components/ContextMenu.tsx | 1 - .../NewLibrary/components/FileCard.tsx | 1 - .../NewLibrary/components/LayoutSwitch.tsx | 42 ++++ .../NewLibrary/components/LibraryTable.tsx | 196 +++++++++++++----- src/components/NewLibrary/index.tsx | 104 ++++++---- src/store/cart/cartSlice.ts | 5 + src/store/cart/types.ts | 1 + 12 files changed, 308 insertions(+), 104 deletions(-) create mode 100644 src/components/NewLibrary/components/LayoutSwitch.tsx diff --git a/src/components/Common/index.tsx b/src/components/Common/index.tsx index 3b7f22feb..e81c9cdb5 100644 --- a/src/components/Common/index.tsx +++ b/src/components/Common/index.tsx @@ -1,4 +1,5 @@ import { + Bullseye, ClipboardCopy, ClipboardCopyButton, Dropdown, @@ -15,6 +16,7 @@ import { MenuToggle, TextInput, } from "@patternfly/react-core"; +import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; import { Alert, Popover, Spin, Typography } from "antd"; import React, { type ReactNode, useState } from "react"; import Dots from "react-activity/dist/Dots"; @@ -99,7 +101,7 @@ export const ClipboardCopyContainer = ({ path }: { path: string }) => { _event: React.ClipboardEvent, text: string, ) => { - if (typeof navigator.clipboard == "undefined") { + if (typeof navigator.clipboard === "undefined") { const textArea = document.createElement("textarea"); textArea.value = text; textArea.style.position = "fixed"; @@ -385,3 +387,43 @@ export const getIcon = (type: string, isDarkTheme: boolean) => { return ; } }; + +// This example has been simplified to focus on the empty state. In real usage, +// you may want to derive your rows from typed underlying data and minimal state. See other examples. + +interface EmptyTableProps { + columnNames: { + [key: string]: string; + }[]; +} + +export const TableEmptyState: React.FunctionComponent = ({ + columnNames, +}: EmptyTableProps) => ( + + + + {columnNames.map((column, index) => { + // biome-ignore lint/suspicious/noArrayIndexKey: + return ; + })} + + + + + + + +
{Object.values(column)[0]}
+ + + } + titleText="No results found" + headingLevel="h2" + /> + No Data Found under this path + + +
+); diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 4eca4e641..f5c1c0ef4 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -207,6 +207,9 @@ const FileBrowser = (props: FileBrowserProps) => { if (type === "file" && fileName.indexOf(".") > -1) { iconType = getFileExtension(fileName); fsize = bytesToSize(item.data.fsize); + } else if (type === "link") { + fsize = bytesToSize(item.data.fsize); + iconType = type; } else { iconType = type; } diff --git a/src/components/Icons/index.tsx b/src/components/Icons/index.tsx index ad30d5d22..2af1624dc 100644 --- a/src/components/Icons/index.tsx +++ b/src/components/Icons/index.tsx @@ -30,6 +30,8 @@ import { EditIcon, FileArchiveIcon as PatternflyArchiveIcon, CheckCircleIcon, + BarsIcon, + GripVerticalIcon, } from "@patternfly/react-icons"; const CartIcon = ({ @@ -304,4 +306,6 @@ export { EllipsisVIcon, EditIcon, RetryIcon, + BarsIcon, + GripVerticalIcon, }; diff --git a/src/components/NewLibrary/components/BreadcrumbContainer.tsx b/src/components/NewLibrary/components/BreadcrumbContainer.tsx index c4a49727e..4ef4d8e25 100644 --- a/src/components/NewLibrary/components/BreadcrumbContainer.tsx +++ b/src/components/NewLibrary/components/BreadcrumbContainer.tsx @@ -38,8 +38,8 @@ const BreadcrumbContainer = ({ style={{ paddingTop: "0", paddingLeft: "0", paddingBottom: "0" }} > - - {showHomeButton && ( + {showHomeButton && ( + } diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index 2f97e2fd7..4324a5a19 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -7,7 +7,6 @@ import { DeleteIcon, DownloadIcon, DuplicateIcon, - EditIcon, MergeIcon, ShareIcon, } from "../../Icons"; diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index ad548318e..aa63d528a 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -40,7 +40,6 @@ type Pagination = { type ComponentProps = { name: string; - computedPath: string; date: string; onClick?: (e: React.MouseEvent) => void; diff --git a/src/components/NewLibrary/components/LayoutSwitch.tsx b/src/components/NewLibrary/components/LayoutSwitch.tsx new file mode 100644 index 000000000..16b51d16d --- /dev/null +++ b/src/components/NewLibrary/components/LayoutSwitch.tsx @@ -0,0 +1,42 @@ +import { + ToggleGroup, + ToggleGroupItem, + type ToggleGroupItemProps, +} from "@patternfly/react-core"; +import { BarsIcon, GripVerticalIcon } from "../../Icons"; +import { switchLibraryLayout } from "../../../store/cart/cartSlice"; +import { useDispatch } from "react-redux"; +import { useTypedSelector } from "../../../store/hooks"; + +const LayoutSwitch = () => { + const currentLayout = useTypedSelector((state) => state.cart.currentLayout); + const dispatch = useDispatch(); + const handleChange: ToggleGroupItemProps["onChange"] = (event) => { + dispatch(switchLibraryLayout(event.currentTarget.id)); + }; + return ( +
+ + } + buttonId="list" + onChange={handleChange} + isSelected={currentLayout === "list"} + /> + } + onChange={handleChange} + isSelected={currentLayout === "grid"} + /> + +
+ ); +}; + +export default LayoutSwitch; diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 0c75a29a0..8e1f91281 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -1,20 +1,30 @@ -import React from "react"; -import { - Table, - Caption, - Thead, - Tr, - Th, - Tbody, - Td, -} from "@patternfly/react-table"; import type { FileBrowserFolder, FileBrowserFolderFile, FileBrowserFolderLinkFile, } from "@fnndsc/chrisapi"; -import { getFolderName } from "./FolderCard"; +import { Button } from "@patternfly/react-core"; +import { + Caption, + Table, + Tbody, + Td, + Th, + Thead, + Tr, +} from "@patternfly/react-table"; +import { useQueryClient } from "@tanstack/react-query"; +import { format } from "date-fns"; +import React, { useContext } from "react"; +import { useNavigate } from "react-router"; +import { useTypedSelector } from "../../../store/hooks"; +import { getIcon } from "../../Common"; +import { ThemeContext } from "../../DarkTheme/useTheme"; +import useLongPress, { getBackgroundRowColor } from "../utils/longpress"; +import { FolderContextMenu } from "./ContextMenu"; import { getFileName, getLinkFileName } from "./FileCard"; +import { getFolderName } from "./FolderCard"; +import { formatBytes } from "../../Feeds/utilties"; interface TableProps { data: { @@ -23,25 +33,115 @@ interface TableProps { linkFiles: FileBrowserFolderLinkFile[]; }; computedPath: string; + handleFolderClick: (folderName: string) => void; } +const columnNames = { + name: "Name", + date: "Date", + owner: "Owner", + size: "Size", +}; + const LibraryTable: React.FunctionComponent = ( props: TableProps, ) => { - // In real usage, this data would come from some external source like an API via props. + const navigate = useNavigate(); + const { handlers } = useLongPress(); + const { handleOnClick } = handlers; + const queryClient = useQueryClient(); + const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); + const isDarkTheme = useContext(ThemeContext).isDarkTheme; + const { data, computedPath, handleFolderClick } = props; + + const renderRow = ( + resource: + | FileBrowserFolder + | FileBrowserFolderFile + | FileBrowserFolderLinkFile, + name: string, + date: string, + owner: string, + size: number, + type: string, + ) => { + const isSelected = + selectedPaths.length > 0 && + selectedPaths.some((payload) => payload.path === resource.data.path); + const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); + + const icon = getIcon(type, isDarkTheme); + + const handleItem = ( + item: + | FileBrowserFolderFile + | FileBrowserFolder + | FileBrowserFolderLinkFile, + type: string, + ) => { + if (type === "folder") { + handleFolderClick(name); + } - const { data, computedPath } = props; + if (type === "link") { + navigate(item.data.path); + } - const columnNames = { - name: "Name", - date: "Date", - owner: "Owner", - size: "Size", + if (type === "file") { + // Show preview + } + }; + + const path = type === "file" ? resource.data.fname : resource.data.path; + + return ( + { + queryClient.refetchQueries({ + queryKey: ["library_folders", computedPath], + }); + }} + key={path} + > + { + handleOnClick(e, resource, path, type); + }} + onContextMenu={(e) => { + handleOnClick(e, resource, path, type); + }} + key={name} + > + + + + + {" "} + {format(new Date(date), "dd MMM yyyy, HH:mm")} + + {owner} + + {size > 0 ? formatBytes(size, 0) : " "} + + + + ); }; return ( - +
@@ -54,46 +154,36 @@ const LibraryTable: React.FunctionComponent = ( {data.folders.map((resource: FileBrowserFolder) => { const folderName = getFolderName(resource, computedPath); - return ( - - - - - - + return renderRow( + resource, + folderName, + resource.data.creation_date, + " ", + // Size of the folder is not available yet + 0, + "folder", ); })} - {data.files.map((resource) => { + {data.files.map((resource: FileBrowserFolderFile) => { const fileName = getFileName(resource); - return ( - - - - - - + return renderRow( + resource, + fileName, + resource.data.creation_date, + resource.data.owner_username, + resource.data.fsize, + "file", ); })} - - {data.linkFiles.map((resource) => { + {data.linkFiles.map((resource: FileBrowserFolderLinkFile) => { const fileName = getLinkFileName(resource); - return ( - - - - - - + return renderRow( + resource, + fileName, + resource.data.creation_date, + resource.data.owner_username, + resource.data.fsize, + "link", ); })} diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index 7df76bea8..85f6cb537 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -22,6 +22,7 @@ import { FilesCard, LinkCard } from "./components/FileCard"; import { FolderCard } from "./components/FolderCard"; import Operations from "./components/Operations"; import LibraryTable from "./components/LibraryTable"; +import LayoutSwitch from "./components/LayoutSwitch"; const { Paragraph } = Typography; @@ -100,6 +101,7 @@ const NewLibrary = () => { const [pageNumber, setPageNumber] = useState(1); const [isFirstLoad, setIsFirstLoad] = useState(true); const username = useTypedSelector((state) => state.user.username); + const currentLayout = useTypedSelector((state) => state.cart.currentLayout); const decodedPath = decodeURIComponent(pathname); const currentPathSplit = decodedPath.split("/library/")[1]; const computedPath = currentPathSplit || "/"; @@ -163,6 +165,8 @@ const NewLibrary = () => { return null; } + console.log("Current Layout", currentLayout); + return ( @@ -196,6 +200,9 @@ const NewLibrary = () => { computedPath={computedPath} folderList={data?.folderList} /> + + + { @@ -208,55 +215,66 @@ const NewLibrary = () => { {isLoading && } {isError && } - {data && - data.subFoldersMap.length === 0 && - data.linkFilesMap.length === 0 && - data.filesMap.length === 0 && ( - - )} - {data ? ( + + {/* Render based on currentLayout */} + {currentLayout === "list" ? ( <> - - + ) : ( + - - - {fetchMore && !isLoading && ( - - )} -
- - + )} ) : ( - + <> + {data && + data.subFoldersMap.length === 0 && + data.linkFilesMap.length === 0 && + data.filesMap.length === 0 ? ( + + ) : ( + + + + + {fetchMore && !isLoading && ( + + )} +
+ + )} + )} diff --git a/src/store/cart/cartSlice.ts b/src/store/cart/cartSlice.ts index a4ad7d0d5..f8f1702db 100644 --- a/src/store/cart/cartSlice.ts +++ b/src/store/cart/cartSlice.ts @@ -9,6 +9,7 @@ import type { } from "./types"; const initialState: ICartState = { + currentLayout: "grid", selectedPaths: [], openCart: false, folderDownloadStatus: {}, @@ -21,6 +22,9 @@ const cartSlice = createSlice({ name: "cart", initialState, reducers: { + switchLibraryLayout(state, action: PayloadAction<"grid" | "list">) { + state.currentLayout = action.payload; + }, startUpload(state, _action: PayloadAction) { state.openCart = true; }, @@ -155,6 +159,7 @@ const cartSlice = createSlice({ }); export const { + switchLibraryLayout, startUpload, setSelectedPaths, setBulkSelectedPaths, diff --git a/src/store/cart/types.ts b/src/store/cart/types.ts index f1841022d..2f0a2e155 100644 --- a/src/store/cart/types.ts +++ b/src/store/cart/types.ts @@ -64,6 +64,7 @@ export interface FeedCreationStatus { } export interface ICartState { + currentLayout: "grid" | "list"; selectedPaths: SelectionPayload[]; openCart: boolean; folderDownloadStatus: DownloadStatus; From 1d8817914de0fed56db748710c932b2d70a31652 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 21 Aug 2024 13:15:21 -0400 Subject: [PATCH 122/337] feat: Cleanup --- src/components/NewLibrary/index.tsx | 2 -- 1 file changed, 2 deletions(-) diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index 85f6cb537..e56fb79ee 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -165,8 +165,6 @@ const NewLibrary = () => { return null; } - console.log("Current Layout", currentLayout); - return ( From c6a5ee9eb89e4c3becfe2f58c2f01672a9365e71 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 21 Aug 2024 13:45:00 -0400 Subject: [PATCH 123/337] fix: Fix load data on scroll for the library page --- .../NewLibrary/components/LayoutSwitch.tsx | 2 + src/components/NewLibrary/index.tsx | 37 +++++++++++++------ 2 files changed, 28 insertions(+), 11 deletions(-) diff --git a/src/components/NewLibrary/components/LayoutSwitch.tsx b/src/components/NewLibrary/components/LayoutSwitch.tsx index 16b51d16d..04b157d7c 100644 --- a/src/components/NewLibrary/components/LayoutSwitch.tsx +++ b/src/components/NewLibrary/components/LayoutSwitch.tsx @@ -23,12 +23,14 @@ const LayoutSwitch = () => { > } buttonId="list" onChange={handleChange} isSelected={currentLayout === "list"} /> } onChange={handleChange} diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index e56fb79ee..bbc77385e 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -106,7 +106,7 @@ const NewLibrary = () => { const currentPathSplit = decodedPath.split("/library/")[1]; const computedPath = currentPathSplit || "/"; const { data, isLoading, isError, error } = useQuery({ - queryKey: ["library_folders", computedPath], + queryKey: ["library_folders", computedPath, pageNumber], queryFn: () => fetchFolders(computedPath, pageNumber), placeholderData: keepPreviousData, structuralSharing: true, @@ -223,15 +223,29 @@ const NewLibrary = () => { data.filesMap.length === 0 ? ( ) : ( - + <> + + {fetchMore && !isLoading && ( + + )} +
+ )} ) : ( @@ -266,7 +280,8 @@ const NewLibrary = () => { )}
From 15921cd63dcc683d963e7c104ca4fe3b8f47a04f Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 22 Aug 2024 10:54:03 -0400 Subject: [PATCH 124/337] fix: Fix load data on scroll for the library page --- src/components/Login/index.tsx | 17 +++- src/components/Routing/RouterContext.tsx | 11 --- src/components/XtkViewer/CrvFileSelect.tsx | 10 +- .../XtkViewer/PrimaryFileSelect.tsx | 8 +- src/components/XtkViewer/XtkViewer.tsx | 94 +++++++++++-------- 5 files changed, 77 insertions(+), 63 deletions(-) diff --git a/src/components/Login/index.tsx b/src/components/Login/index.tsx index 73b3ac094..b6be08015 100644 --- a/src/components/Login/index.tsx +++ b/src/components/Login/index.tsx @@ -9,7 +9,6 @@ import { LoginMainFooterBandItem, LoginPage, } from "@patternfly/react-core"; -import { ExclamationCircleIcon } from "../Icons"; import queryString from "query-string"; import React from "react"; import { useCookies } from "react-cookie"; @@ -19,6 +18,7 @@ import ChrisAPIClient from "../../api/chrisapiclient"; import ChRIS_Logo_Inline from "../../assets/chris-logo-inline.png"; import ChRIS_Logo from "../../assets/chris-logo.png"; import { setAuthTokenSuccess } from "../../store/user/userSlice"; +import { ExclamationCircleIcon } from "../Icons"; import "./Login.css"; export const SimpleLoginPage: React.FunctionComponent = () => { @@ -60,14 +60,12 @@ export const SimpleLoginPage: React.FunctionComponent = () => { path: "/", maxAge: oneDayToSeconds, }); - const client = ChrisAPIClient.getClient(); const user = await client.getUser(); setCookie("isStaff", user.data.is_staff, { path: "/", maxAge: oneDayToSeconds, }); - dispatch( setAuthTokenSuccess({ token, @@ -79,9 +77,18 @@ export const SimpleLoginPage: React.FunctionComponent = () => { const { redirectTo } = queryString.parse(location.search) as { redirectTo: string; }; - - if (redirectTo) { + if (redirectTo?.startsWith("/library")) { + navigate(`/library/home/${username}`); + } else if (redirectTo?.startsWith("/feeds")) { + const feedIdMatch = redirectTo.match(/^\/feeds\/\d+/); + if (feedIdMatch) { + navigate("/feeds?type=private"); + } else { + navigate(redirectTo); + } + } else if (redirectTo) { const decodedRedirectTo = decodeURIComponent(redirectTo); + console.log(decodedRedirectTo); navigate(decodedRedirectTo); } else { navigate("/"); diff --git a/src/components/Routing/RouterContext.tsx b/src/components/Routing/RouterContext.tsx index bb0341f20..35ca4344f 100644 --- a/src/components/Routing/RouterContext.tsx +++ b/src/components/Routing/RouterContext.tsx @@ -9,7 +9,6 @@ type RouterContextType = React.Context>; type RouterObjectType = { state: S; actions: A; - route: (path: string) => any; }; export function RouterContext({ @@ -19,7 +18,6 @@ export function RouterContext({ return [ state, React.createContext>({ - route: (path: string) => path, actions: actions ? actions : ({} as A), state, }), @@ -30,8 +28,6 @@ interface RouterProviderProps { context: RouterContextType; state: S; actions: A; - route?: string; - setRoute: (route?: string) => any; children: React.ReactNode; } @@ -39,16 +35,12 @@ export function RouterProvider({ context, actions, state, - route, - setRoute, children, }: RouterProviderProps) { const props = { context, actions, state, - route, - setRoute, children, }; return ; @@ -62,9 +54,6 @@ const RouterComponent = ({ return ( { - console.log("NEEDED"); - }, state, actions, }} diff --git a/src/components/XtkViewer/CrvFileSelect.tsx b/src/components/XtkViewer/CrvFileSelect.tsx index 4acd3335f..0bdb021c5 100644 --- a/src/components/XtkViewer/CrvFileSelect.tsx +++ b/src/components/XtkViewer/CrvFileSelect.tsx @@ -5,13 +5,13 @@ import { SimpleListItem, } from "@patternfly/react-core"; import { useState } from "react"; -import { FeedFile } from "@fnndsc/chrisapi"; +import type { FileBrowserFolderFile } from "@fnndsc/chrisapi"; interface CrvFileSelectProps { - files: FeedFile[]; - selectedFile?: FeedFile; + files: FileBrowserFolderFile[]; + selectedFile?: FileBrowserFolderFile; title?: string; - handleSelect: (file: FeedFile) => void; + handleSelect: (file: FileBrowserFolderFile) => void; } const CrvFileSelect = (props: CrvFileSelectProps) => { @@ -23,7 +23,7 @@ const CrvFileSelect = (props: CrvFileSelectProps) => { { // data passing between item and handler is done through props - const file = (listItemProps as any)["x-file"] as FeedFile; + const file = (listItemProps as any)["x-file"] as FileBrowserFolderFile; handleSelect(file); setOpen(false); }} diff --git a/src/components/XtkViewer/PrimaryFileSelect.tsx b/src/components/XtkViewer/PrimaryFileSelect.tsx index 6b2baaae1..0b058cf54 100644 --- a/src/components/XtkViewer/PrimaryFileSelect.tsx +++ b/src/components/XtkViewer/PrimaryFileSelect.tsx @@ -1,9 +1,9 @@ import { SimpleList, SimpleListItem } from "@patternfly/react-core"; -import { FeedFile } from "@fnndsc/chrisapi"; +import type { FileBrowserFolderFile } from "@fnndsc/chrisapi"; interface FsmFileSelectProps { - files: FeedFile[]; - handleSelect: (file: FeedFile) => void; + files: FileBrowserFolderFile[]; + handleSelect: (file: FileBrowserFolderFile) => void; } const FsmFileSelect = (props: FsmFileSelectProps) => { @@ -13,7 +13,7 @@ const FsmFileSelect = (props: FsmFileSelectProps) => { { // data passing between item and handler is done through props - const file = (listItemProps as any)["x-file"] as FeedFile; + const file = (listItemProps as any)["x-file"] as FileBrowserFolderFile; handleSelect(file); }} className="fsm-file-list" diff --git a/src/components/XtkViewer/XtkViewer.tsx b/src/components/XtkViewer/XtkViewer.tsx index 0c2406529..2bf4bf7cf 100644 --- a/src/components/XtkViewer/XtkViewer.tsx +++ b/src/components/XtkViewer/XtkViewer.tsx @@ -1,10 +1,12 @@ -import { useEffect, useRef, useState } from "react"; +import type { FileBrowserFolderFile } from "@fnndsc/chrisapi"; import { Button } from "@patternfly/react-core"; import AiOutlineExpand from "@patternfly/react-icons/dist/esm/icons/expand-alt-icon"; -import { FeedFile } from "@fnndsc/chrisapi"; +import { useEffect, useRef, useState } from "react"; import { useTypedSelector } from "../../store/hooks"; -import FsmFileSelect from "./PrimaryFileSelect"; +import { Alert } from "../Antd"; +import { useFeedBrowser } from "../FeedOutputBrowser/useFeedBrowser"; import CrvFileSelect from "./CrvFileSelect"; +import FsmFileSelect from "./PrimaryFileSelect"; import "./xtk-viewer.css"; // X and dat are loaded in from script file @@ -14,10 +16,10 @@ declare const dat: any; export type ViewerMode = "volume" | "mesh" | "other"; type VolumeMode = "3D" | "2D"; -const getFileType = (file?: FeedFile) => +const getFileType = (file?: FileBrowserFolderFile) => file?.data.fname.split(".").slice(-1)[0]; -const getFileData = async (file: FeedFile) => +const getFileData = async (file: FileBrowserFolderFile) => (await file.getFileBlob())?.arrayBuffer(); export function getXtkFileMode(fileType?: string): ViewerMode | undefined { @@ -26,16 +28,21 @@ export function getXtkFileMode(fileType?: string): ViewerMode | undefined { const otherExtensions = ["crv"]; if (!fileType) { return; - } else if (volumeExtensions.includes(fileType)) { + } + if (volumeExtensions.includes(fileType)) { return "volume"; - } else if (meshExtensions.includes(fileType)) { + } + if (meshExtensions.includes(fileType)) { return "mesh"; - } else if (otherExtensions.includes(fileType)) { + } + if (otherExtensions.includes(fileType)) { return "other"; } } -function getPrimaryFileMode(file: FeedFile): ViewerMode | undefined { +function getPrimaryFileMode( + file: FileBrowserFolderFile, +): ViewerMode | undefined { const fileType = getFileType(file); return getXtkFileMode(fileType); } @@ -43,11 +50,9 @@ function getPrimaryFileMode(file: FeedFile): ViewerMode | undefined { const XtkViewer = () => { const selectedFile = useTypedSelector((state) => state.explorer.selectedFile); const selectedFileType = getFileType(selectedFile); - const { pluginFiles } = useTypedSelector((state) => state.resource); - const selected = useTypedSelector((state) => state.instance.selectedPlugin); - const pluginFilesPayload = selected && pluginFiles[selected.data.id]; - const directoryFiles = pluginFilesPayload ? pluginFilesPayload.files : []; - const crvFiles = directoryFiles.filter((file) => { + const { pluginFilesPayload } = useFeedBrowser(); + const directoryFiles = pluginFilesPayload?.folderFiles; + const crvFiles = directoryFiles?.filter((file) => { const fileName = file.data.fname; return fileName?.endsWith(".crv"); }); @@ -58,15 +63,19 @@ const XtkViewer = () => { ? getPrimaryFileMode(defaultPrimaryFile) : undefined; - const [primaryFile, setPrimaryFile] = useState( - defaultPrimaryFile, - ); + const [primaryFile, setPrimaryFile] = useState< + FileBrowserFolderFile | undefined + >(defaultPrimaryFile); const [viewerMode, setViewerMode] = useState( defaultViewerMode, ); const [volumeMode, setVolumeMode] = useState("3D"); - const [crvFile, setCrvFile] = useState(defaultCrvFile); - const [secondaryFile, setSecondaryFile] = useState(); + const [crvFile, setCrvFile] = useState( + defaultCrvFile, + ); + const [secondaryFile, setSecondaryFile] = useState< + FileBrowserFolderFile | undefined + >(); const [orientation, setOrientation] = useState("x"); const [fullscreen, setFullscreen] = useState(false); @@ -127,7 +136,7 @@ const XtkViewer = () => { r.add(secondaryObject); } - r.onShowtime = function () { + r.onShowtime = () => { gui = new dat.GUI(); if (viewerMode === "mesh") { @@ -164,12 +173,8 @@ const XtkViewer = () => { renderFileData(); return () => { - try { - r && r.destroy(); - gui && gui.destroy(); - } catch (e) { - console.log(e); - } + r?.destroy(); + gui?.destroy(); }; }, [ viewerMode, @@ -192,6 +197,10 @@ const XtkViewer = () => { const datGuiContainerRef = useRef(null); const fullscreenRef = useRef(null); + if (!directoryFiles) { + return ; + } + return (
{ /> ) : ( <> -
+
{viewerMode === "mesh" ? (
- - + {crvFiles ? ( + <> + + + + ) : ( + + )}
) : (
From 8e5375d92c05d7bb9b39b2551d4fc5fbb6bbdd02 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 22 Aug 2024 11:08:09 -0400 Subject: [PATCH 125/337] feat: Update the location of the layout switch button --- src/components/Login/index.tsx | 1 - .../NewLibrary/components/LayoutSwitch.tsx | 39 ++++++++----------- .../NewLibrary/components/Operations.tsx | 14 ++++++- src/components/NewLibrary/index.tsx | 7 +--- 4 files changed, 30 insertions(+), 31 deletions(-) diff --git a/src/components/Login/index.tsx b/src/components/Login/index.tsx index b6be08015..4af89e240 100644 --- a/src/components/Login/index.tsx +++ b/src/components/Login/index.tsx @@ -88,7 +88,6 @@ export const SimpleLoginPage: React.FunctionComponent = () => { } } else if (redirectTo) { const decodedRedirectTo = decodeURIComponent(redirectTo); - console.log(decodedRedirectTo); navigate(decodedRedirectTo); } else { navigate("/"); diff --git a/src/components/NewLibrary/components/LayoutSwitch.tsx b/src/components/NewLibrary/components/LayoutSwitch.tsx index 04b157d7c..b17fec4fc 100644 --- a/src/components/NewLibrary/components/LayoutSwitch.tsx +++ b/src/components/NewLibrary/components/LayoutSwitch.tsx @@ -15,29 +15,22 @@ const LayoutSwitch = () => { dispatch(switchLibraryLayout(event.currentTarget.id)); }; return ( -
- - } - buttonId="list" - onChange={handleChange} - isSelected={currentLayout === "list"} - /> - } - onChange={handleChange} - isSelected={currentLayout === "grid"} - /> - -
+ + } + buttonId="list" + onChange={handleChange} + isSelected={currentLayout === "list"} + /> + } + onChange={handleChange} + isSelected={currentLayout === "grid"} + /> + ); }; diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 52cabec50..01a4bddda 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -39,8 +39,8 @@ import { } from "../../Icons"; import { useFolderOperations } from "../utils/useOperations"; import "./Operations.css"; -import Client from "@fnndsc/chrisapi"; -import ChrisAPIClient from "../../../api/chrisapiclient"; +import { useLocation } from "react-router"; +import LayoutSwitch from "./LayoutSwitch"; export enum ContextTypes { feed_table = "FEEDS_TABLE", @@ -199,6 +199,7 @@ const items = [ ]; const Operations = React.forwardRef((props: OperationProps, ref) => { + const location = useLocation(); const { inValidateFolders, computedPath, @@ -445,6 +446,15 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { {toolbarItems} + {location.pathname.startsWith("/library/") && ( + + + + )} diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index bbc77385e..02d38a4ed 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -9,20 +9,19 @@ import { useQuery, useQueryClient, } from "@tanstack/react-query"; -import { Alert, Typography } from "../Antd"; import { debounce } from "lodash"; import { useEffect, useRef, useState } from "react"; import { useLocation, useNavigate } from "react-router"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useTypedSelector } from "../../store/hooks"; +import { Alert, Typography } from "../Antd"; import { EmptyStateComponent, InfoIcon, SpinContainer } from "../Common"; import WrapperConnect from "../Wrapper"; import BreadcrumbContainer from "./components/BreadcrumbContainer"; import { FilesCard, LinkCard } from "./components/FileCard"; import { FolderCard } from "./components/FolderCard"; -import Operations from "./components/Operations"; import LibraryTable from "./components/LibraryTable"; -import LayoutSwitch from "./components/LayoutSwitch"; +import Operations from "./components/Operations"; const { Paragraph } = Typography; @@ -199,8 +198,6 @@ const NewLibrary = () => { folderList={data?.folderList} /> - - { From 711dbb5cc635892c2733674a4fffecc3a89d4321 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 22 Aug 2024 17:26:56 -0400 Subject: [PATCH 126/337] feat: Update how queries are refetched or invalidated --- .../FeedOutputBrowser/FeedOutputBrowser.tsx | 6 +- .../FeedOutputBrowser/FileBrowser.tsx | 19 ++++-- src/components/FeedOutputBrowser/types.ts | 2 +- .../FeedOutputBrowser/useFeedBrowser.tsx | 15 ++--- src/components/Feeds/FeedListView.tsx | 34 ++++------ .../NewLibrary/components/ContextMenu.tsx | 11 ++- .../NewLibrary/components/FileCard.tsx | 27 ++++---- .../NewLibrary/components/FolderCard.tsx | 9 ++- .../NewLibrary/components/Operations.tsx | 28 +++----- src/components/NewLibrary/context/index.tsx | 67 +++++++++++++++++++ src/components/NewLibrary/index.tsx | 12 ++-- .../NewLibrary/utils/useDeletePayload.tsx | 9 +-- .../NewLibrary/utils/useFeedOperations.tsx | 10 ++- .../NewLibrary/utils/useOperations.tsx | 22 +++--- src/routes.tsx | 21 ++++-- 15 files changed, 181 insertions(+), 111 deletions(-) create mode 100644 src/components/NewLibrary/context/index.tsx diff --git a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx index 825522e45..293ddd532 100644 --- a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx +++ b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx @@ -7,9 +7,9 @@ import { } from "@patternfly/react-core"; import { Alert } from "../Antd"; import { SpinContainer } from "../Common"; +import "./FeedOutputBrowser.css"; import FileBrowser from "./FileBrowser"; import { useFeedBrowser } from "./useFeedBrowser"; -import "./FeedOutputBrowser.css"; export interface FeedOutputBrowserProps { handlePluginSelect: (node: PluginInstance) => void; @@ -27,7 +27,7 @@ const FeedOutputBrowser: React.FC = () => { filesLoading, isError, error, - inValidateFolders, + currentPath, } = useFeedBrowser(); return ( @@ -38,7 +38,7 @@ const FeedOutputBrowser: React.FC = () => { handleFileClick={handleFileClick} pluginFilesPayload={pluginFilesPayload} filesLoading={filesLoading} - inValidateFolders={inValidateFolders} + currentPath={currentPath} /> ) : statusTitle && statusTitles.includes(statusTitle) ? ( diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index f5c1c0ef4..a9ec311a4 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -15,6 +15,7 @@ import { Tooltip, } from "@patternfly/react-core"; import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; +import { format } from "date-fns"; import { useContext, useEffect } from "react"; import { useDispatch } from "react-redux"; import { getFileExtension } from "../../api/model"; @@ -30,6 +31,9 @@ import { ThemeContext } from "../DarkTheme/useTheme"; import { DrawerActionButton } from "../Feeds/DrawerUtils"; import { handleMaximize, handleMinimize } from "../Feeds/utilties"; import { HomeIcon } from "../Icons"; +import { FolderContextMenu } from "../NewLibrary/components/ContextMenu"; +import Operations from "../NewLibrary/components/Operations"; +import { OperationContext } from "../NewLibrary/context"; import useLongPress, { getBackgroundRowColor, } from "../NewLibrary/utils/longpress"; @@ -37,9 +41,6 @@ import FileDetailView from "../Preview/FileDetailView"; import XtkViewer from "../XtkViewer/XtkViewer"; import type { FileBrowserProps } from "./types"; import { bytesToSize } from "./utilities"; -import { FolderContextMenu } from "../NewLibrary/components/ContextMenu"; -import Operations from "../NewLibrary/components/Operations"; -import { format } from "date-fns"; const previewAnimation = [{ opacity: "0.0" }, { opacity: "1.0" }]; @@ -68,7 +69,7 @@ const FileBrowser = (props: FileBrowserProps) => { handleFileClick, selected, filesLoading, - inValidateFolders, + currentPath: additionalKey, } = props; const selectedFile = useTypedSelector((state) => state.explorer.selectedFile); const drawerState = useTypedSelector((state) => state.drawers); @@ -245,7 +246,10 @@ const FileBrowser = (props: FileBrowserProps) => { return (
{ diff --git a/src/components/FeedOutputBrowser/types.ts b/src/components/FeedOutputBrowser/types.ts index 0f757b213..9e0b3110c 100644 --- a/src/components/FeedOutputBrowser/types.ts +++ b/src/components/FeedOutputBrowser/types.ts @@ -19,7 +19,7 @@ export interface FileBrowserProps { handleFileClick: (path: string) => void; selected: PluginInstance; filesLoading: boolean; - inValidateFolders: () => void; + currentPath: string; } export interface FileBrowserState { diff --git a/src/components/FeedOutputBrowser/useFeedBrowser.tsx b/src/components/FeedOutputBrowser/useFeedBrowser.tsx index 10a70abe3..a911548bf 100644 --- a/src/components/FeedOutputBrowser/useFeedBrowser.tsx +++ b/src/components/FeedOutputBrowser/useFeedBrowser.tsx @@ -5,8 +5,7 @@ import type { import { useQuery, useQueryClient } from "@tanstack/react-query"; import React from "react"; import ChrisAPIClient from "../../api/chrisapiclient"; -import { fetchResource } from "../../api/common"; -import { catchError } from "../../api/common"; +import { catchError, fetchResource } from "../../api/common"; import { useTypedSelector } from "../../store/hooks"; import type { FilesPayload } from "./types"; @@ -104,13 +103,15 @@ export const useFeedBrowser = () => { (statusTitle && status.includes(statusTitle)) ); + const queryKey = ["pluginFiles", currentPath]; + const { data: pluginFilesPayload, isLoading: filesLoading, isError, error, } = useQuery({ - queryKey: ["pluginFiles", currentPath], + queryKey: queryKey, queryFn: () => fetchFilesFromAPath(currentPath), enabled: !!selected && !!currentPath && finished, }); @@ -141,12 +142,6 @@ export const useFeedBrowser = () => { } }; - const inValidateFolders = () => { - queryClient.refetchQueries({ - queryKey: ["pluginFiles", currentPath], - }); - }; - return { handleFileClick, filesLoading, @@ -159,6 +154,6 @@ export const useFeedBrowser = () => { pluginFilesPayload, filesStatus: drawerState.files, previewStatus: drawerState.preview, - inValidateFolders, + currentPath, }; }; diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index eff12ff68..b3f3d5fbc 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -16,7 +16,7 @@ import { Tooltip, } from "@patternfly/react-core"; import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; -import { useQuery, useQueryClient } from "@tanstack/react-query"; +import { useQuery } from "@tanstack/react-query"; import { format } from "date-fns"; import type React from "react"; import { useContext, useEffect, useState } from "react"; @@ -30,7 +30,7 @@ import { CreateFeedProvider } from "../CreateFeed/context"; import { ThemeContext } from "../DarkTheme/useTheme"; import { SearchIcon } from "../Icons"; import { FolderContextMenu } from "../NewLibrary/components/ContextMenu"; -import Operations, { ContextTypes } from "../NewLibrary/components/Operations"; +import Operations from "../NewLibrary/components/Operations"; import useLongPress from "../NewLibrary/utils/longpress"; import { PipelineProvider } from "../PipelinesCopy/context"; import WrapperConnect from "../Wrapper"; @@ -40,6 +40,7 @@ import { fetchPublicFeeds, getPluginInstanceDetails, } from "./utilties"; +import { OperationContext } from "../NewLibrary/context"; const { Paragraph } = Typography; @@ -52,7 +53,6 @@ const useSearchQuery = (query: URLSearchParams) => ({ }); const TableSelectable: React.FC = () => { - const queryClient = useQueryClient(); const query = useSearchQueryParams(); const navigate = useNavigate(); @@ -99,10 +99,6 @@ const TableSelectable: React.FC = () => { ); }; - const handleFilterChange = (search: string, searchType: string) => { - navigate(`/feeds?search=${search}&searchType=${searchType}&type=${type}`); - }; - const onExampleTypeChange: ToggleGroupItemProps["onChange"] = (event) => { const id = event.currentTarget.id; navigate( @@ -134,12 +130,6 @@ const TableSelectable: React.FC = () => { const loadingFeedState = isLoading || isFetching || publicFeedLoading || publicFeedFetching; - const inValidateFolders = () => { - queryClient.refetchQueries({ - queryKey: ["feeds"], - }); - }; - const generatePagination = (feedCount?: number) => { if (!feedCount && loadingFeedState) { return ; @@ -218,9 +208,11 @@ const TableSelectable: React.FC = () => { {loadingFeedState ? ( @@ -247,7 +239,7 @@ const TableSelectable: React.FC = () => { columnNames={columnNames} allFeeds={feedsToDisplay} type={type} - inValidateFolders={inValidateFolders} + additionalKeys={[perPage, page, type, search, searchType]} /> ))} @@ -276,13 +268,13 @@ interface TableRowProps { status: string; }; type: string; - inValidateFolders: () => void; + additionalKeys: string[]; } const TableRow: React.FC = ({ feed, columnNames, - inValidateFolders, + additionalKeys, }) => { const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); @@ -337,8 +329,10 @@ const TableRow: React.FC = ({ return ( void; + origin: OriginState; folderList?: FileBrowserFolderList; - context?: ContextTypes; } export const FolderContextMenu = (props: ContextMenuProps) => { - const { children, inValidateFolders, folderList, computedPath, context } = - props; + const { children, origin, folderList, computedPath } = props; const { modalInfo, userError, @@ -32,7 +31,7 @@ export const FolderContextMenu = (props: ContextMenuProps) => { contextHolder, setUserErrors, setModalInfo, - } = useFolderOperations(inValidateFolders, computedPath, folderList, context); + } = useFolderOperations(origin, computedPath, folderList); const items: MenuProps["items"] = [ { key: "createFeed", label: "Create Feed", icon: }, diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index aa63d528a..9caec2355 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -32,6 +32,7 @@ import useLongPress, { getBackgroundRowColor, } from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; +import { OperationContext, type OriginState } from "../context"; type Pagination = { totalCount: number; @@ -42,9 +43,9 @@ type ComponentProps = { name: string; computedPath: string; date: string; + origin: OriginState; onClick?: (e: React.MouseEvent) => void; onMouseDown?: () => void; - inValidateFolders?: () => void; onCheckboxChange?: (e: React.FormEvent) => void; onContextMenuClick?: (e: React.MouseEvent) => void; onNavigate: () => void; @@ -55,7 +56,7 @@ type ComponentProps = { const PresentationComponent: React.FC = ({ name, - inValidateFolders, + origin, date, onClick, onNavigate, @@ -67,7 +68,7 @@ const PresentationComponent: React.FC = ({ bgRow, }) => ( - inValidateFolders?.()}> + = ({ file, computedPath, }) => { - const queryClient = useQueryClient(); const { isDarkTheme } = useContext(ThemeContext); const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const handleDownloadMutation = useDownload(); @@ -235,12 +235,11 @@ export const SubFileCard: React.FC = ({ <> {contextHolder} { - queryClient.refetchQueries({ - queryKey: ["library_folders", computedPath], - }); + origin={{ + type: OperationContext.LIBRARY, + additionalKeys: [computedPath], }} + onClick={handleClick} onMouseDown={handlers.handleOnMouseDown} onCheckboxChange={handleCheckboxChange} onContextMenuClick={handleClick} @@ -280,7 +279,6 @@ export const SubLinkCard: React.FC = ({ computedPath, }) => { const navigate = useNavigate(); - const queryClient = useQueryClient(); const { isDarkTheme } = useContext(ThemeContext); const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const handleDownloadMutation = useDownload(); @@ -328,12 +326,11 @@ export const SubLinkCard: React.FC = ({ <> {contextHolder} { - queryClient.refetchQueries({ - queryKey: ["library_folders", computedPath], - }); + origin={{ + type: OperationContext.LIBRARY, + additionalKeys: [computedPath], }} + onClick={handleClick} onMouseDown={handlers.handleOnMouseDown} onCheckboxChange={handleCheckboxChange} onContextMenuClick={handleClick} diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index c4c2a0a74..33d33199f 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -20,6 +20,7 @@ import { ThemeContext } from "../../DarkTheme/useTheme"; import { FolderIcon } from "../../Icons"; import useLongPress, { getBackgroundRowColor } from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; +import { OperationContext } from "../context"; type Pagination = { totalCount: number; @@ -67,7 +68,6 @@ export function getFolderName(folder: FileBrowserFolder, computedPath: string) { export const SubFolderCard: React.FC = (props) => { const { folder, computedPath, handleFolderClick } = props; - const queryClient = useQueryClient(); const isDarkTheme = useContext(ThemeContext).isDarkTheme; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); @@ -105,10 +105,9 @@ export const SubFolderCard: React.FC = (props) => { return ( { - queryClient.refetchQueries({ - queryKey: ["library_folders", computedPath], - }); + origin={{ + type: OperationContext.LIBRARY, + additionalKeys: [computedPath], }} > void; + origin: OriginState; computedPath?: string; folderList?: FileBrowserFolderList; customStyle?: { @@ -80,7 +75,6 @@ interface OperationProps { customClassName?: { [key: string]: string; }; - context?: ContextTypes; } export const AddModal = (props: AddModalProps) => { @@ -199,17 +193,13 @@ const items = [ ]; const Operations = React.forwardRef((props: OperationProps, ref) => { + const { invalidateQueries } = useOperationsContext(); const location = useLocation(); - const { - inValidateFolders, - computedPath, - folderList, - customStyle, - customClassName, - context, - } = props; + const { origin, computedPath, folderList, customStyle, customClassName } = + props; const dispatch = useDispatch(); + const { modalInfo, userError, @@ -222,7 +212,7 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { contextHolder, setUserErrors, setModalInfo, - } = useFolderOperations(inValidateFolders, computedPath, folderList, context); + } = useFolderOperations(origin, computedPath, folderList); useImperativeHandle(ref, () => ({ triggerFileUpload: () => { @@ -248,9 +238,9 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { Object.values(folderUploadStatus).some(isUploadComplete); if (hasFileUploadCompleted || hasFolderUploadCompleted) { - inValidateFolders(); + invalidateQueries(); } - }, [fileUploadStatus, folderUploadStatus, inValidateFolders]); + }, [fileUploadStatus, folderUploadStatus, origin]); const renderOperationButton = ( icon: React.ReactNode, diff --git a/src/components/NewLibrary/context/index.tsx b/src/components/NewLibrary/context/index.tsx new file mode 100644 index 000000000..19bba20a4 --- /dev/null +++ b/src/components/NewLibrary/context/index.tsx @@ -0,0 +1,67 @@ +import { useQueryClient } from "@tanstack/react-query"; +import { createContext, useContext, useState } from "react"; + +export enum OperationContext { + LIBRARY = "library", + FEEDS = "feeds", + FILEBROWSER = "fileBrowser", +} + +export interface OriginState { + type: OperationContext; + additionalKeys: string[]; +} + +interface OperationsContextType { + invalidateQueries: () => void; + setOrigin: React.Dispatch>; +} + +const OperationsContext = createContext( + undefined, +); + +export const useOperationsContext = () => { + const context = useContext(OperationsContext); + if (!context) { + throw new Error( + "useOperationsContext must be used within an OperationsProvider", + ); + } + return context; +}; + +export const OperationsProvider: React.FC< + React.PropsWithChildren<{ + children: React.ReactElement; + }> +> = ({ children }) => { + const queryClient = useQueryClient(); + const [origin, setOrigin] = useState(); + + const invalidateQueries = () => { + switch (origin?.type) { + case OperationContext.LIBRARY: + queryClient.refetchQueries({ + queryKey: ["library_folders", ...origin.additionalKeys], + }); + break; + case OperationContext.FEEDS: + console.log("additionalKeys", origin.additionalKeys); + queryClient.refetchQueries({ + queryKey: ["feeds", ...origin.additionalKeys], + }); + break; + case OperationContext.FILEBROWSER: + queryClient.refetchQueries({ + queryKey: ["pluginFiles", ...origin.additionalKeys], + }); + } + }; + + return ( + + {children} + + ); +}; diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index 02d38a4ed..b4a6b204a 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -22,6 +22,7 @@ import { FilesCard, LinkCard } from "./components/FileCard"; import { FolderCard } from "./components/FolderCard"; import LibraryTable from "./components/LibraryTable"; import Operations from "./components/Operations"; +import { OperationContext } from "./context"; const { Paragraph } = Typography; @@ -95,7 +96,6 @@ const NewLibrary = () => { } const { pathname } = useLocation(); - const queryClient = useQueryClient(); const navigate = useNavigate(); const [pageNumber, setPageNumber] = useState(1); const [isFirstLoad, setIsFirstLoad] = useState(true); @@ -104,8 +104,9 @@ const NewLibrary = () => { const decodedPath = decodeURIComponent(pathname); const currentPathSplit = decodedPath.split("/library/")[1]; const computedPath = currentPathSplit || "/"; + const queryKey = ["library_folders", computedPath, pageNumber]; const { data, isLoading, isError, error } = useQuery({ - queryKey: ["library_folders", computedPath, pageNumber], + queryKey: queryKey, queryFn: () => fetchFolders(computedPath, pageNumber), placeholderData: keepPreviousData, structuralSharing: true, @@ -189,10 +190,9 @@ const NewLibrary = () => { /> { - queryClient.refetchQueries({ - queryKey: ["library_folders", computedPath], - }); + origin={{ + type: OperationContext.LIBRARY, + additionalKeys: [computedPath], }} computedPath={computedPath} folderList={data?.folderList} diff --git a/src/components/NewLibrary/utils/useDeletePayload.tsx b/src/components/NewLibrary/utils/useDeletePayload.tsx index b0a7f957e..c6b95b0cf 100644 --- a/src/components/NewLibrary/utils/useDeletePayload.tsx +++ b/src/components/NewLibrary/utils/useDeletePayload.tsx @@ -5,14 +5,17 @@ import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../../api/chrisapiclient"; import { clearSelectedPaths } from "../../../store/cart/cartSlice"; import type { SelectionPayload } from "../../../store/cart/types"; +import { type OriginState, useOperationsContext } from "../context"; type DeletionErrors = { path: string; message: string }[]; -const useDeletePayload = (inValidateFolders: () => void, api: any) => { +const useDeletePayload = (origin: OriginState, api: any) => { + const { setOrigin, invalidateQueries } = useOperationsContext(); const dispatch = useDispatch(); const [notificationKey, setNotificationKey] = useState(null); const handleDelete = async (paths: SelectionPayload[]) => { + setOrigin(origin); const errors: DeletionErrors = []; const successfulPaths: string[] = []; @@ -27,7 +30,6 @@ const useDeletePayload = (inValidateFolders: () => void, api: any) => { Authorization: `Token ${client.auth.token}`, }, }); - successfulPaths.push(pathToClear); } catch (e) { if (axios.isAxiosError(e)) { @@ -43,9 +45,7 @@ const useDeletePayload = (inValidateFolders: () => void, api: any) => { }), ); - inValidateFolders(); successfulPaths.forEach((path) => dispatch(clearSelectedPaths(path))); - return errors.length > 0 ? errors : null; }; @@ -79,6 +79,7 @@ const useDeletePayload = (inValidateFolders: () => void, api: any) => { placement: "topRight", }); } else { + invalidateQueries(); api.success({ message: "Deletion Successful", description: "Selected files and folders were successfully deleted.", diff --git a/src/components/NewLibrary/utils/useFeedOperations.tsx b/src/components/NewLibrary/utils/useFeedOperations.tsx index 5375c9cf5..d39cc730c 100644 --- a/src/components/NewLibrary/utils/useFeedOperations.tsx +++ b/src/components/NewLibrary/utils/useFeedOperations.tsx @@ -5,8 +5,10 @@ import { getFileName } from "../../../api/common"; import { createFeed } from "../../../store/cart/downloadSaga"; import type { SelectionPayload } from "../../../store/cart/types"; import { useTypedSelector } from "../../../store/hooks"; +import { type OriginState, useOperationsContext } from "../context"; -const useFeedOperations = (inValidateFolders: () => void, api: any) => { +const useFeedOperations = (origin: OriginState, api: any) => { + const { setOrigin, invalidateQueries } = useOperationsContext(); const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const giveMePaths = useMemo(() => { @@ -14,6 +16,7 @@ const useFeedOperations = (inValidateFolders: () => void, api: any) => { }, [selectedPaths]); const handleDuplicate = async () => { + setOrigin(origin); const paths = giveMePaths; try { const feedList = await Promise.all( @@ -44,6 +47,7 @@ const useFeedOperations = (inValidateFolders: () => void, api: any) => { }; const handleMerge = async () => { + setOrigin(origin); const paths = giveMePaths; try { const sanitizedPaths = await Promise.all( @@ -86,7 +90,7 @@ const useFeedOperations = (inValidateFolders: () => void, api: any) => { api.success({ message: "Feed copied successfully", }); - inValidateFolders(); + invalidateQueries(); }, onError: (e) => { api.error({ @@ -102,7 +106,7 @@ const useFeedOperations = (inValidateFolders: () => void, api: any) => { api.success({ message: "Feed merged successfully", }); - inValidateFolders(); + invalidateQueries(); }, onError: (e) => { api.error({ diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index a275077be..417cb4d9a 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -13,16 +13,17 @@ import { } from "../../../store/cart/cartSlice"; import { useTypedSelector } from "../../../store/hooks"; import { notification } from "../../Antd"; -import type { AdditionalValues, ContextTypes } from "../components/Operations"; +import type { AdditionalValues } from "../components/Operations"; +import { type OriginState, useOperationsContext } from "../context"; import useDeletePayload from "../utils/useDeletePayload"; import useFeedOperations from "./useFeedOperations"; export const useFolderOperations = ( - inValidateFolders: () => void, + origin: OriginState, computedPath?: string, // This path is passed to for file upload and folder uploads in the library folderList?: FileBrowserFolderList, - _context?: ContextTypes, ) => { + const { setOrigin, invalidateQueries } = useOperationsContext(); const router = useContext(MainRouterContext); const { selectedPaths } = useTypedSelector((state) => state.cart); const username = useTypedSelector((state) => state.user.username); @@ -33,9 +34,9 @@ export const useFolderOperations = ( const fileInput = useRef(null); const [api, contextHolder] = notification.useNotification(); - const deleteMutation = useDeletePayload(inValidateFolders, api); + const deleteMutation = useDeletePayload(origin, api); const { handleDuplicateMutation, handleMergeMutation } = useFeedOperations( - inValidateFolders, + origin, api, ); @@ -46,6 +47,7 @@ export const useFolderOperations = ( }; const handleFileChange = async (e: React.ChangeEvent) => { + setOrigin(origin); const fileList = e.target.files || []; const files = Array.from(fileList); dispatch( @@ -55,6 +57,7 @@ export const useFolderOperations = ( }; const handleFolderChange = async (e: React.ChangeEvent) => { + setOrigin(origin); const fileList = e.target.files || []; const files = Array.from(fileList); dispatch( @@ -68,10 +71,11 @@ export const useFolderOperations = ( }; const createFolder = async (inputValue: string) => { + setOrigin(origin); const finalPath = `${computedPath}/${inputValue}`; try { await folderList?.post({ path: finalPath }); - inValidateFolders(); + invalidateQueries(); } catch (error: any) { const path = error?.response?.data?.path; const message = !isEmpty(path) ? path[0] : "Failed to create a folder."; @@ -150,6 +154,7 @@ export const useFolderOperations = ( } case "download": + setOrigin(origin); dispatch(setToggleCart()); dispatch( startDownload({ @@ -160,11 +165,10 @@ export const useFolderOperations = ( // Invalidate the folders after a time limit. This is poorly designed, as this part of the UI assumes // that a feed will be created within a certain time frame. Mixing Redux and React Query isn't effective. // A better design needs to be considered. - setTimeout(() => { - inValidateFolders(); - }, 2000); + invalidateQueries(); break; case "anonymize": + setOrigin(origin); dispatch(setToggleCart()); dispatch( startAnonymize({ diff --git a/src/routes.tsx b/src/routes.tsx index 512d489a1..91ca8bf51 100644 --- a/src/routes.tsx +++ b/src/routes.tsx @@ -1,5 +1,10 @@ import * as React from "react"; -import { useNavigate, useRoutes, matchPath } from "react-router-dom"; +import { + useNavigate, + useRoutes, + matchPath, + useLocation, +} from "react-router-dom"; import ComputePage from "./components/ComputePage"; import Dashboard from "./components/Dashboard"; import DatasetRedirect from "./components/DatasetRedirect"; @@ -24,6 +29,7 @@ import Store from "./components/Store"; import { useTypedSelector } from "./store/hooks"; import { useDispatch } from "react-redux"; import { setSidebarActive } from "./store/ui/uiSlice"; +import { OperationsProvider } from "./components/NewLibrary/context"; interface IState { selectData?: Series; @@ -43,6 +49,7 @@ export const [State, MainRouterContext] = RouterContext({ }); export const MainRouter: React.FC = () => { + const location = useLocation(); const dispatch = useDispatch(); const [state, setState] = React.useState(State); const [route, setRoute] = React.useState(); @@ -125,7 +132,9 @@ export const MainRouter: React.FC = () => { {...{ actions, state, route, setRoute }} context={MainRouterContext} > - + + + ), @@ -138,7 +147,9 @@ export const MainRouter: React.FC = () => { {...{ actions, state, route, setRoute }} context={MainRouterContext} > - + + + ), }, @@ -149,7 +160,9 @@ export const MainRouter: React.FC = () => { {...{ actions, state, route, setRoute }} context={MainRouterContext} > - + + + ), }, From b3c1d2b6f25c92a9917a79e004f55debe265c901 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 22 Aug 2024 17:30:43 -0400 Subject: [PATCH 127/337] fix: Cleanup --- src/components/NewLibrary/components/LibraryTable.tsx | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 8e1f91281..5fe3aaaa8 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -25,6 +25,7 @@ import { FolderContextMenu } from "./ContextMenu"; import { getFileName, getLinkFileName } from "./FileCard"; import { getFolderName } from "./FolderCard"; import { formatBytes } from "../../Feeds/utilties"; +import { OperationContext } from "../context"; interface TableProps { data: { @@ -96,10 +97,9 @@ const LibraryTable: React.FunctionComponent = ( return ( { - queryClient.refetchQueries({ - queryKey: ["library_folders", computedPath], - }); + origin={{ + type: OperationContext.LIBRARY, + additionalKeys: [computedPath], }} key={path} > From b0ea26d208e0ff64f120431c965b063692fb8a35 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 23 Aug 2024 11:10:06 -0400 Subject: [PATCH 128/337] feat: Update how the context in which operations are called is determined --- src/components/NewLibrary/context/index.tsx | 26 ++++++++++++------- src/components/NewLibrary/index.tsx | 6 +---- .../NewLibrary/utils/useDeletePayload.tsx | 4 +-- .../NewLibrary/utils/useFeedOperations.tsx | 6 ++--- .../NewLibrary/utils/useOperations.tsx | 12 ++++----- 5 files changed, 29 insertions(+), 25 deletions(-) diff --git a/src/components/NewLibrary/context/index.tsx b/src/components/NewLibrary/context/index.tsx index 19bba20a4..2d4dbc391 100644 --- a/src/components/NewLibrary/context/index.tsx +++ b/src/components/NewLibrary/context/index.tsx @@ -1,5 +1,5 @@ import { useQueryClient } from "@tanstack/react-query"; -import { createContext, useContext, useState } from "react"; +import { createContext, useContext, useRef } from "react"; export enum OperationContext { LIBRARY = "library", @@ -14,7 +14,7 @@ export interface OriginState { interface OperationsContextType { invalidateQueries: () => void; - setOrigin: React.Dispatch>; + handleOrigin: (origin: OriginState) => void; } const OperationsContext = createContext( @@ -37,30 +37,38 @@ export const OperationsProvider: React.FC< }> > = ({ children }) => { const queryClient = useQueryClient(); - const [origin, setOrigin] = useState(); + const originRef = useRef(); + + const handleOrigin = (newOrigin: OriginState) => { + originRef.current = newOrigin; + }; const invalidateQueries = () => { - switch (origin?.type) { + const additionalKeys = originRef.current?.additionalKeys || []; + const type = originRef.current?.type; + + if (!type) return; + switch (type) { case OperationContext.LIBRARY: queryClient.refetchQueries({ - queryKey: ["library_folders", ...origin.additionalKeys], + queryKey: ["library_folders", ...additionalKeys], }); break; + case OperationContext.FEEDS: - console.log("additionalKeys", origin.additionalKeys); queryClient.refetchQueries({ - queryKey: ["feeds", ...origin.additionalKeys], + queryKey: ["feeds", ...additionalKeys], }); break; case OperationContext.FILEBROWSER: queryClient.refetchQueries({ - queryKey: ["pluginFiles", ...origin.additionalKeys], + queryKey: ["pluginFiles", ...additionalKeys], }); } }; return ( - + {children} ); diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index b4a6b204a..23dd4ae43 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -4,11 +4,7 @@ import type { FileBrowserFolderLinkFile, } from "@fnndsc/chrisapi"; import { Button, Grid, PageSection } from "@patternfly/react-core"; -import { - keepPreviousData, - useQuery, - useQueryClient, -} from "@tanstack/react-query"; +import { keepPreviousData, useQuery } from "@tanstack/react-query"; import { debounce } from "lodash"; import { useEffect, useRef, useState } from "react"; import { useLocation, useNavigate } from "react-router"; diff --git a/src/components/NewLibrary/utils/useDeletePayload.tsx b/src/components/NewLibrary/utils/useDeletePayload.tsx index c6b95b0cf..33970a25d 100644 --- a/src/components/NewLibrary/utils/useDeletePayload.tsx +++ b/src/components/NewLibrary/utils/useDeletePayload.tsx @@ -10,12 +10,12 @@ import { type OriginState, useOperationsContext } from "../context"; type DeletionErrors = { path: string; message: string }[]; const useDeletePayload = (origin: OriginState, api: any) => { - const { setOrigin, invalidateQueries } = useOperationsContext(); + const { handleOrigin, invalidateQueries } = useOperationsContext(); const dispatch = useDispatch(); const [notificationKey, setNotificationKey] = useState(null); const handleDelete = async (paths: SelectionPayload[]) => { - setOrigin(origin); + handleOrigin(origin); const errors: DeletionErrors = []; const successfulPaths: string[] = []; diff --git a/src/components/NewLibrary/utils/useFeedOperations.tsx b/src/components/NewLibrary/utils/useFeedOperations.tsx index d39cc730c..8257e6410 100644 --- a/src/components/NewLibrary/utils/useFeedOperations.tsx +++ b/src/components/NewLibrary/utils/useFeedOperations.tsx @@ -8,7 +8,7 @@ import { useTypedSelector } from "../../../store/hooks"; import { type OriginState, useOperationsContext } from "../context"; const useFeedOperations = (origin: OriginState, api: any) => { - const { setOrigin, invalidateQueries } = useOperationsContext(); + const { handleOrigin, invalidateQueries } = useOperationsContext(); const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const giveMePaths = useMemo(() => { @@ -16,7 +16,7 @@ const useFeedOperations = (origin: OriginState, api: any) => { }, [selectedPaths]); const handleDuplicate = async () => { - setOrigin(origin); + handleOrigin(origin); const paths = giveMePaths; try { const feedList = await Promise.all( @@ -47,7 +47,7 @@ const useFeedOperations = (origin: OriginState, api: any) => { }; const handleMerge = async () => { - setOrigin(origin); + handleOrigin(origin); const paths = giveMePaths; try { const sanitizedPaths = await Promise.all( diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index 417cb4d9a..ffc3323e8 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -23,7 +23,7 @@ export const useFolderOperations = ( computedPath?: string, // This path is passed to for file upload and folder uploads in the library folderList?: FileBrowserFolderList, ) => { - const { setOrigin, invalidateQueries } = useOperationsContext(); + const { handleOrigin, invalidateQueries } = useOperationsContext(); const router = useContext(MainRouterContext); const { selectedPaths } = useTypedSelector((state) => state.cart); const username = useTypedSelector((state) => state.user.username); @@ -47,7 +47,7 @@ export const useFolderOperations = ( }; const handleFileChange = async (e: React.ChangeEvent) => { - setOrigin(origin); + handleOrigin(origin); const fileList = e.target.files || []; const files = Array.from(fileList); dispatch( @@ -57,7 +57,7 @@ export const useFolderOperations = ( }; const handleFolderChange = async (e: React.ChangeEvent) => { - setOrigin(origin); + handleOrigin(origin); const fileList = e.target.files || []; const files = Array.from(fileList); dispatch( @@ -71,7 +71,7 @@ export const useFolderOperations = ( }; const createFolder = async (inputValue: string) => { - setOrigin(origin); + handleOrigin(origin); const finalPath = `${computedPath}/${inputValue}`; try { await folderList?.post({ path: finalPath }); @@ -154,7 +154,7 @@ export const useFolderOperations = ( } case "download": - setOrigin(origin); + handleOrigin(origin); dispatch(setToggleCart()); dispatch( startDownload({ @@ -168,7 +168,7 @@ export const useFolderOperations = ( invalidateQueries(); break; case "anonymize": - setOrigin(origin); + handleOrigin(origin); dispatch(setToggleCart()); dispatch( startAnonymize({ From f4363d1250a19c9d7f0488353d4479ff5a6eab78 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 23 Aug 2024 15:56:25 -0400 Subject: [PATCH 129/337] feat: Update file previews for library table --- package-lock.json | 6414 ++++++++++------- .../NewLibrary/components/FileCard.tsx | 1 - .../NewLibrary/components/LibraryTable.tsx | 30 +- .../Preview/displays/ImageDisplay.tsx | 32 +- 4 files changed, 3988 insertions(+), 2489 deletions(-) diff --git a/package-lock.json b/package-lock.json index c5faa2e6e..d0a803e00 100644 --- a/package-lock.json +++ b/package-lock.json @@ -99,6 +99,8 @@ }, "node_modules/@ampproject/remapping": { "version": "2.3.0", + "resolved": "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.3.0.tgz", + "integrity": "sha512-30iZtAPgz+LTIYoeivqYo853f02jBYSd5uGnGpkFV0M3xOt9aN73erkgYAmZU43x4VfqcnLxW9Kpg3R5LC4YYw==", "license": "Apache-2.0", "dependencies": { "@jridgewell/gen-mapping": "^0.3.5", @@ -118,9 +120,9 @@ } }, "node_modules/@ant-design/cssinjs": { - "version": "1.21.0", - "resolved": "https://registry.npmjs.org/@ant-design/cssinjs/-/cssinjs-1.21.0.tgz", - "integrity": "sha512-gIilraPl+9EoKdYxnupxjHB/Q6IHNRjEXszKbDxZdsgv4sAZ9pjkCq8yanDWNvyfjp4leir2OVAJm0vxwKK8YA==", + "version": "1.21.1", + "resolved": "https://registry.npmjs.org/@ant-design/cssinjs/-/cssinjs-1.21.1.tgz", + "integrity": "sha512-tyWnlK+XH7Bumd0byfbCiZNK43HEubMoCcu9VxwsAwiHdHTgWa+tMN0/yvxa+e8EzuFP1WdUNNPclRpVtD33lg==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.11.1", @@ -129,7 +131,7 @@ "classnames": "^2.3.1", "csstype": "^3.1.3", "rc-util": "^5.35.0", - "stylis": "^4.0.13" + "stylis": "^4.3.3" }, "peerDependencies": { "react": ">=16.0.0", @@ -152,9 +154,9 @@ } }, "node_modules/@ant-design/cssinjs-utils/node_modules/@babel/runtime": { - "version": "7.25.0", - "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.0.tgz", - "integrity": "sha512-7dRy4DwXwtzBrPbZflqxnvfxLF8kdZXPkhymtDeFoFqE6ldzjQFgYTtYIFARcLEYDrqfBfYcZt1WqFxRoyC9Rw==", + "version": "7.25.4", + "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.4.tgz", + "integrity": "sha512-DSgLeL/FNcpXuzav5wfYvHCGvynXkJbn3Zvc3823AEe9nPwW9IK4UoCSS5yGymmQzN0pCPvivtgS6/8U2kkm1w==", "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" @@ -176,9 +178,9 @@ } }, "node_modules/@ant-design/fast-color/node_modules/@babel/runtime": { - "version": "7.25.0", - "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.0.tgz", - "integrity": "sha512-7dRy4DwXwtzBrPbZflqxnvfxLF8kdZXPkhymtDeFoFqE6ldzjQFgYTtYIFARcLEYDrqfBfYcZt1WqFxRoyC9Rw==", + "version": "7.25.4", + "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.4.tgz", + "integrity": "sha512-DSgLeL/FNcpXuzav5wfYvHCGvynXkJbn3Zvc3823AEe9nPwW9IK4UoCSS5yGymmQzN0pCPvivtgS6/8U2kkm1w==", "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" @@ -214,9 +216,9 @@ "license": "MIT" }, "node_modules/@ant-design/icons/node_modules/@babel/runtime": { - "version": "7.25.0", - "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.0.tgz", - "integrity": "sha512-7dRy4DwXwtzBrPbZflqxnvfxLF8kdZXPkhymtDeFoFqE6ldzjQFgYTtYIFARcLEYDrqfBfYcZt1WqFxRoyC9Rw==", + "version": "7.25.4", + "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.4.tgz", + "integrity": "sha512-DSgLeL/FNcpXuzav5wfYvHCGvynXkJbn3Zvc3823AEe9nPwW9IK4UoCSS5yGymmQzN0pCPvivtgS6/8U2kkm1w==", "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" @@ -243,6 +245,8 @@ }, "node_modules/@babel/code-frame": { "version": "7.24.7", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.24.7.tgz", + "integrity": "sha512-BcYH1CVJBO9tvyIZ2jVeXgSIMvGZ2FDRvDdOIVQyuklNKSsx+eppDEBq/g47Ayw+RqNFE+URvOShmf+f/qwAlA==", "license": "MIT", "dependencies": { "@babel/highlight": "^7.24.7", @@ -253,7 +257,9 @@ } }, "node_modules/@babel/compat-data": { - "version": "7.25.2", + "version": "7.25.4", + "resolved": "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.25.4.tgz", + "integrity": "sha512-+LGRog6RAsCJrrrg/IO6LGmpphNe5DiK30dGjCoxxeGv49B10/3XYGxPsAwrDlMFcFEvdAUavDT8r9k/hSyQqQ==", "license": "MIT", "engines": { "node": ">=6.9.0" @@ -261,6 +267,8 @@ }, "node_modules/@babel/core": { "version": "7.25.2", + "resolved": "https://registry.npmjs.org/@babel/core/-/core-7.25.2.tgz", + "integrity": "sha512-BBt3opiCOxUr9euZ5/ro/Xv8/V7yJ5bjYMqG/C1YAo8MIKAnumZalCN+msbci3Pigy4lIQfPUpfMM27HMGaYEA==", "license": "MIT", "dependencies": { "@ampproject/remapping": "^2.2.0", @@ -289,20 +297,26 @@ }, "node_modules/@babel/core/node_modules/convert-source-map": { "version": "2.0.0", + "resolved": "https://registry.npmjs.org/convert-source-map/-/convert-source-map-2.0.0.tgz", + "integrity": "sha512-Kvp459HrV2FEJ1CAsi1Ku+MY3kasH19TFykTz2xWmMeq6bk2NU3XXvfJ+Q61m0xktWwt+1HSYf3JZsTms3aRJg==", "license": "MIT" }, "node_modules/@babel/core/node_modules/semver": { "version": "6.3.1", + "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz", + "integrity": "sha512-BR7VvDCVHO+q2xBEWskxS6DJE1qRnb7DxzUrogb71CWoSficBxYsiAGd+Kl0mmq/MprG9yArRkyrQxTO6XjMzA==", "license": "ISC", "bin": { "semver": "bin/semver.js" } }, "node_modules/@babel/generator": { - "version": "7.25.0", + "version": "7.25.5", + "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.25.5.tgz", + "integrity": "sha512-abd43wyLfbWoxC6ahM8xTkqLpGB2iWBVyuKC9/srhFunCd1SDNrV1s72bBpK4hLj8KLzHBBcOblvLQZBNw9r3w==", "license": "MIT", "dependencies": { - "@babel/types": "^7.25.0", + "@babel/types": "^7.25.4", "@jridgewell/gen-mapping": "^0.3.5", "@jridgewell/trace-mapping": "^0.3.25", "jsesc": "^2.5.1" @@ -313,6 +327,8 @@ }, "node_modules/@babel/helper-compilation-targets": { "version": "7.25.2", + "resolved": "https://registry.npmjs.org/@babel/helper-compilation-targets/-/helper-compilation-targets-7.25.2.tgz", + "integrity": "sha512-U2U5LsSaZ7TAt3cfaymQ8WHh0pxvdHoEk6HVpaexxixjyEquMh0L0YNJNM6CTGKMXV1iksi0iZkGw4AcFkPaaw==", "license": "MIT", "dependencies": { "@babel/compat-data": "^7.25.2", @@ -327,6 +343,8 @@ }, "node_modules/@babel/helper-compilation-targets/node_modules/semver": { "version": "6.3.1", + "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz", + "integrity": "sha512-BR7VvDCVHO+q2xBEWskxS6DJE1qRnb7DxzUrogb71CWoSficBxYsiAGd+Kl0mmq/MprG9yArRkyrQxTO6XjMzA==", "license": "ISC", "bin": { "semver": "bin/semver.js" @@ -334,6 +352,8 @@ }, "node_modules/@babel/helper-module-imports": { "version": "7.24.7", + "resolved": "https://registry.npmjs.org/@babel/helper-module-imports/-/helper-module-imports-7.24.7.tgz", + "integrity": "sha512-8AyH3C+74cgCVVXow/myrynrAGv+nTVg5vKu2nZph9x7RcRwzmh0VFallJuFTZ9mx6u4eSdXZfcOzSqTUm0HCA==", "license": "MIT", "dependencies": { "@babel/traverse": "^7.24.7", @@ -345,6 +365,8 @@ }, "node_modules/@babel/helper-module-transforms": { "version": 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"node_modules/whatwg-mimetype": { "version": "3.0.0", + "resolved": "https://registry.npmjs.org/whatwg-mimetype/-/whatwg-mimetype-3.0.0.tgz", + "integrity": "sha512-nt+N2dzIutVRxARx1nghPKGv1xHikU7HKdfafKkLNLindmPU/ch3U31NOCGGA/dmPcmb1VlofO0vnKAcsm0o/Q==", "dev": true, "license": "MIT", "engines": { @@ -11555,6 +12971,8 @@ }, "node_modules/whatwg-url": { "version": "5.0.0", + "resolved": "https://registry.npmjs.org/whatwg-url/-/whatwg-url-5.0.0.tgz", + "integrity": "sha512-saE57nupxk6v3HY35+jzBwYa0rKSy0XR8JSxZPwgLr7ys0IBzhGviA1/TUGJLmSVqs8pb9AnvICXEuOHLprYTw==", "license": "MIT", "dependencies": { "tr46": "~0.0.3", @@ -11563,10 +12981,14 @@ }, "node_modules/whatwg-url/node_modules/webidl-conversions": { "version": "3.0.1", + "resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz", + "integrity": "sha512-2JAn3z8AR6rjK8Sm8orRC0h/bcl/DqL7tRPdGZ4I1CjdF+EaMLmYxBHyXuKL849eucPFhvBoxMsflfOb8kxaeQ==", "license": "BSD-2-Clause" }, "node_modules/which": { "version": "2.0.2", + "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz", + "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==", "dev": true, "license": "ISC", "dependencies": { @@ -11581,11 +13003,15 @@ }, "node_modules/which-module": { "version": "2.0.1", + "resolved": "https://registry.npmjs.org/which-module/-/which-module-2.0.1.tgz", + "integrity": "sha512-iBdZ57RDvnOR9AGBhML2vFZf7h8vmBjhoaZqODJBFWHVtKkDmKuHai3cx5PgVMrX5YDNp27AofYbAwctSS+vhQ==", "dev": true, "license": "ISC" }, "node_modules/why-is-node-running": { "version": "2.3.0", + "resolved": "https://registry.npmjs.org/why-is-node-running/-/why-is-node-running-2.3.0.tgz", + "integrity": "sha512-hUrmaWBdVDcxvYqnyh09zunKzROWjbZTiNy8dBEjkS7ehEDQibXJ7XvlmtbwuTclUiIyN+CyXQD4Vmko8fNm8w==", "dev": true, "license": "MIT", "dependencies": { @@ -11601,6 +13027,8 @@ }, "node_modules/worker-loader": { "version": "3.0.8", + "resolved": "https://registry.npmjs.org/worker-loader/-/worker-loader-3.0.8.tgz", + "integrity": "sha512-XQyQkIFeRVC7f7uRhFdNMe/iJOdO6zxAaR3EWbDp45v3mDhrTi+++oswKNxShUNjPC/1xUp5DB29YKLhFo129g==", "license": "MIT", "dependencies": { "loader-utils": "^2.0.0", @@ -11619,6 +13047,8 @@ }, "node_modules/worker-loader/node_modules/loader-utils": { "version": "2.0.4", + "resolved": "https://registry.npmjs.org/loader-utils/-/loader-utils-2.0.4.tgz", + "integrity": "sha512-xXqpXoINfFhgua9xiqD8fPFHgkoq1mmmpE92WlDbm9rNRd/EbRb+Gqf908T2DMfuHjjJlksiK2RbHVOdD/MqSw==", "license": "MIT", "dependencies": { "big.js": "^5.2.2", @@ -11631,6 +13061,8 @@ }, "node_modules/wrap-ansi": { "version": "6.2.0", + "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-6.2.0.tgz", + "integrity": "sha512-r6lPcBGxZXlIcymEu7InxDMhdW0KDxpLgoFLcguasxCaJ/SOIZwINatK9KY/tf+ZrlywOKU0UDj3ATXUBfxJXA==", "dev": true, "license": "MIT", "dependencies": { @@ -11644,6 +13076,8 @@ }, "node_modules/wrap-ansi/node_modules/ansi-styles": { "version": "4.3.0", + "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz", + "integrity": "sha512-zbB9rCJAT1rbjiVDb2hqKFHNYLxgtk8NURxZ3IZwD3F6NtxbXZQCnnSi1Lkx+IDohdPlFp222wVALIheZJQSEg==", "dev": true, "license": "MIT", "dependencies": { @@ -11658,6 +13092,8 @@ }, "node_modules/wrap-ansi/node_modules/color-convert": { "version": "2.0.1", + "resolved": "https://registry.npmjs.org/color-convert/-/color-convert-2.0.1.tgz", + "integrity": "sha512-RRECPsj7iu/xb5oKYcsFHSppFNnsj/52OVTRKb4zP5onXwVF3zVmmToNcOfGC+CRDpfK/U584fMg38ZHCaElKQ==", "dev": true, "license": "MIT", "dependencies": { @@ -11669,15 +13105,21 @@ }, "node_modules/wrap-ansi/node_modules/color-name": { "version": "1.1.4", + "resolved": "https://registry.npmjs.org/color-name/-/color-name-1.1.4.tgz", + "integrity": "sha512-dOy+3AuW3a2wNbZHIuMZpTcgjGuLU/uBL/ubcZF9OXbDo8ff4O8yVp5Bf0efS8uEoYo5q4Fx7dY9OgQGXgAsQA==", "dev": true, "license": "MIT" }, "node_modules/wrappy": { "version": "1.0.2", + "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", + "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==", "license": "ISC" }, "node_modules/write-file-atomic": { "version": "3.0.3", + "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-3.0.3.tgz", + "integrity": "sha512-AvHcyZ5JnSfq3ioSyjrBkH9yW4m7Ayk8/9My/DD9onKeu/94fwrMocemO2QAJFAlnnDN+ZDS+ZjAR5ua1/PV/Q==", "dev": true, "license": "ISC", "dependencies": { @@ -11689,6 +13131,8 @@ }, "node_modules/write-file-atomic/node_modules/typedarray-to-buffer": { "version": "3.1.5", + "resolved": "https://registry.npmjs.org/typedarray-to-buffer/-/typedarray-to-buffer-3.1.5.tgz", + "integrity": "sha512-zdu8XMNEDepKKR+XYOXAVPtWui0ly0NtohUscw+UmaHiAWT8hrV1rr//H6V+0DvJ3OQ19S979M0laLfX8rm82Q==", "dev": true, "license": "MIT", "dependencies": { @@ -11697,6 +13141,8 @@ }, "node_modules/xmlbuilder2": { "version": "3.0.2", + "resolved": "https://registry.npmjs.org/xmlbuilder2/-/xmlbuilder2-3.0.2.tgz", + "integrity": "sha512-h4MUawGY21CTdhV4xm3DG9dgsqyhDkZvVJBx88beqX8wJs3VgyGQgAn5VreHuae6unTQxh115aMK5InCVmOIKw==", "license": "MIT", "dependencies": { "@oozcitak/dom": "1.15.10", @@ -11711,6 +13157,8 @@ }, "node_modules/xmlbuilder2/node_modules/js-yaml": { "version": "3.14.0", + "resolved": "https://registry.npmjs.org/js-yaml/-/js-yaml-3.14.0.tgz", + "integrity": "sha512-/4IbIeHcD9VMHFqDR/gQ7EdZdLimOvW2DdcxFjdyyZ9NsbS+ccrXqVWDtab/lRl5AlUqmpBx8EhPaWR+OtY17A==", "license": "MIT", "dependencies": { "argparse": "^1.0.7", @@ -11722,6 +13170,8 @@ }, "node_modules/xss": { "version": "1.0.14", + "resolved": "https://registry.npmjs.org/xss/-/xss-1.0.14.tgz", + "integrity": "sha512-og7TEJhXvn1a7kzZGQ7ETjdQVS2UfZyTlsEdDOqvQF7GoxNfY+0YLCzBy1kPdsDDx4QuNAonQPddpsn6Xl/7sw==", "license": "MIT", "dependencies": { "commander": "^2.20.3", @@ -11736,10 +13186,14 @@ }, "node_modules/xss/node_modules/commander": { "version": "2.20.3", + "resolved": "https://registry.npmjs.org/commander/-/commander-2.20.3.tgz", + "integrity": "sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ==", "license": "MIT" }, "node_modules/xtend": { "version": "2.2.0", + "resolved": "https://registry.npmjs.org/xtend/-/xtend-2.2.0.tgz", + "integrity": "sha512-SLt5uylT+4aoXxXuwtQp5ZnMMzhDb1Xkg4pEqc00WUJCQifPfV9Ub1VrNhp9kXkrjZD2I2Hl8WnjP37jzZLPZw==", "dev": true, "engines": { "node": ">=0.4" @@ -11747,15 +13201,21 @@ }, "node_modules/y18n": { "version": "4.0.3", + "resolved": "https://registry.npmjs.org/y18n/-/y18n-4.0.3.tgz", + "integrity": "sha512-JKhqTOwSrqNA1NY5lSztJ1GrBiUodLMmIZuLiDaMRJ+itFd+ABVE8XBjOvIWL+rSqNDC74LCSFmlb/U4UZ4hJQ==", "dev": true, "license": "ISC" }, "node_modules/yallist": { "version": "3.1.1", + "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz", + "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==", "license": "ISC" }, "node_modules/yaml": { "version": "1.10.2", + "resolved": "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz", + "integrity": "sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg==", "license": "ISC", "engines": { "node": ">= 6" @@ -11763,6 +13223,8 @@ }, "node_modules/yargs": { "version": "15.4.1", + "resolved": "https://registry.npmjs.org/yargs/-/yargs-15.4.1.tgz", + "integrity": "sha512-aePbxDmcYW++PaqBsJ+HYUFwCdv4LVvdnhBy78E57PIor8/OVvhMrADFFEDh8DHDFRv/O9i3lPhsENjO7QX0+A==", "dev": true, "license": "MIT", "dependencies": { @@ -11784,6 +13246,8 @@ }, "node_modules/yargs-parser": { "version": "18.1.3", + "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-18.1.3.tgz", + "integrity": "sha512-o50j0JeToy/4K6OZcaQmW6lyXXKhq7csREXcDwk2omFPJEwUNOVtJKvmDr9EI1fAJZUyZcRF7kxGBWmRXudrCQ==", "dev": true, "license": "ISC", "dependencies": { diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index 9caec2355..27b2b4991 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -14,7 +14,6 @@ import { SplitItem, Tooltip, } from "@patternfly/react-core"; -import { useQueryClient } from "@tanstack/react-query"; import { format } from "date-fns"; import { isEmpty } from "lodash"; import type React from "react"; diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 5fe3aaaa8..f114baa20 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -13,19 +13,21 @@ import { Thead, Tr, } from "@patternfly/react-table"; -import { useQueryClient } from "@tanstack/react-query"; import { format } from "date-fns"; -import React, { useContext } from "react"; +import React, { useContext, useState } from "react"; import { useNavigate } from "react-router"; import { useTypedSelector } from "../../../store/hooks"; import { getIcon } from "../../Common"; import { ThemeContext } from "../../DarkTheme/useTheme"; +import { formatBytes } from "../../Feeds/utilties"; +import { OperationContext } from "../context"; import useLongPress, { getBackgroundRowColor } from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; import { getFileName, getLinkFileName } from "./FileCard"; import { getFolderName } from "./FolderCard"; -import { formatBytes } from "../../Feeds/utilties"; -import { OperationContext } from "../context"; +import "./LibraryTable.css"; +import { Drawer } from "antd"; +import FileDetailView from "../../Preview/FileDetailView"; interface TableProps { data: { @@ -50,10 +52,11 @@ const LibraryTable: React.FunctionComponent = ( const navigate = useNavigate(); const { handlers } = useLongPress(); const { handleOnClick } = handlers; - const queryClient = useQueryClient(); const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const isDarkTheme = useContext(ThemeContext).isDarkTheme; const { data, computedPath, handleFolderClick } = props; + const [preview, setShowPreview] = useState(false); + const [selectedFile, setSelectedFile] = useState(); const renderRow = ( resource: @@ -70,7 +73,6 @@ const LibraryTable: React.FunctionComponent = ( selectedPaths.length > 0 && selectedPaths.some((payload) => payload.path === resource.data.path); const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); - const icon = getIcon(type, isDarkTheme); const handleItem = ( @@ -90,6 +92,8 @@ const LibraryTable: React.FunctionComponent = ( if (type === "file") { // Show preview + setSelectedFile(resource as FileBrowserFolderFile); + setShowPreview(true); } }; @@ -141,6 +145,20 @@ const LibraryTable: React.FunctionComponent = ( return ( + { + setShowPreview(false); + setSelectedFile(undefined); + }} + placement="right" + > + {selectedFile && ( + + )} +
Data Library
{folderName} - {resource.data.creation_date} - N/ASize
{fileName} - {resource.data.creation_date} - - {resource.data.owner_username} - {resource.data.fsize}
{fileName} - {resource.data.creation_date} - - {resource.data.owner_username} - {resource.data.fsize}
diff --git a/src/components/Preview/displays/ImageDisplay.tsx b/src/components/Preview/displays/ImageDisplay.tsx index a028298ba..b6e8ccdee 100644 --- a/src/components/Preview/displays/ImageDisplay.tsx +++ b/src/components/Preview/displays/ImageDisplay.tsx @@ -1,4 +1,4 @@ -import React from "react"; +import React, { useEffect, useState } from "react"; import type { IFileBlob } from "../../../api/model"; type AllProps = { @@ -7,16 +7,34 @@ type AllProps = { const ImageDisplay: React.FunctionComponent = (props: AllProps) => { const { fileItem } = props; - const url = fileItem.url - ? fileItem.url - : fileItem.blob - ? window.URL.createObjectURL(new Blob([fileItem.blob])) - : ""; + const [url, setUrl] = useState(""); + + useEffect(() => { + if (fileItem.url) { + setUrl(fileItem.url); + } else if (fileItem.blob) { + // Specify the correct MIME type when creating the Blob + const blob = new Blob([fileItem.blob], { type: "image/png" }); + const objectUrl = URL.createObjectURL(blob); + setUrl(objectUrl); + + // Clean up the object URL when the component unmounts + return () => { + URL.revokeObjectURL(objectUrl); + }; + } + }, [fileItem]); + + if (!url) return null; + return ( + // biome-ignore lint/a11y/useKeyWithClickEvents: e.preventDefault()} /> ); }; From 1d2018334c859f5a3167fff2e8e1d86164f7270b Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 23 Aug 2024 16:06:02 -0400 Subject: [PATCH 130/337] feat: Update the Library Table to show file previews correctly --- .../NewLibrary/components/LibraryTable.tsx | 15 +++++++++++---- 1 file changed, 11 insertions(+), 4 deletions(-) diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index f114baa20..51f770ad4 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -13,6 +13,7 @@ import { Thead, Tr, } from "@patternfly/react-table"; +import { Drawer } from "antd"; import { format } from "date-fns"; import React, { useContext, useState } from "react"; import { useNavigate } from "react-router"; @@ -20,14 +21,12 @@ import { useTypedSelector } from "../../../store/hooks"; import { getIcon } from "../../Common"; import { ThemeContext } from "../../DarkTheme/useTheme"; import { formatBytes } from "../../Feeds/utilties"; +import FileDetailView from "../../Preview/FileDetailView"; import { OperationContext } from "../context"; import useLongPress, { getBackgroundRowColor } from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; import { getFileName, getLinkFileName } from "./FileCard"; import { getFolderName } from "./FolderCard"; -import "./LibraryTable.css"; -import { Drawer } from "antd"; -import FileDetailView from "../../Preview/FileDetailView"; interface TableProps { data: { @@ -71,7 +70,15 @@ const LibraryTable: React.FunctionComponent = ( ) => { const isSelected = selectedPaths.length > 0 && - selectedPaths.some((payload) => payload.path === resource.data.path); + selectedPaths.some((payload) => { + if (type === "folder" || type === "link") { + return payload.path === resource.data.path; + } + + if (type === "file") { + return payload.path === resource.data.fname; + } + }); const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); const icon = getIcon(type, isDarkTheme); From 1c6f8384fd659c81e767a93eb08bf5ab4a2fb76a Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 23 Aug 2024 16:11:55 -0400 Subject: [PATCH 131/337] feat: Cleanup --- src/components/NewLibrary/components/Cart.tsx | 6 ++++-- src/components/NewLibrary/components/FileCard.tsx | 2 +- src/components/NewLibrary/components/FolderCard.tsx | 2 +- src/components/NewLibrary/components/Operations.tsx | 6 +++--- 4 files changed, 9 insertions(+), 7 deletions(-) diff --git a/src/components/NewLibrary/components/Cart.tsx b/src/components/NewLibrary/components/Cart.tsx index 9fdd36276..f44d9481c 100644 --- a/src/components/NewLibrary/components/Cart.tsx +++ b/src/components/NewLibrary/components/Cart.tsx @@ -1,5 +1,4 @@ import { Button, Text, Tooltip } from "@patternfly/react-core"; -import { Drawer, List, Popconfirm, Space } from "../../Antd"; import { isEmpty } from "lodash"; import { useDispatch } from "react-redux"; import { Link } from "react-router-dom"; @@ -12,6 +11,7 @@ import { } from "../../../store/cart/cartSlice"; import { DownloadTypes } from "../../../store/cart/types"; import { useTypedSelector } from "../../../store/hooks"; +import { Drawer, List, Popconfirm, Space } from "../../Antd"; import { DotsIndicator, EmptyStateComponent } from "../../Common"; import { CheckCircleIcon, CloseIcon, FileIcon, FolderIcon } from "../../Icons"; import { ShowInFolder, TitleNameClipped, elipses } from "../utils/longpress"; @@ -166,7 +166,9 @@ const Cart = () => { avatar={} title={ } diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index 27b2b4991..b6fca2325 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -26,12 +26,12 @@ import { getIcon } from "../../Common"; import { ThemeContext } from "../../DarkTheme/useTheme"; import { ExternalLinkSquareAltIcon } from "../../Icons"; import FileDetailView from "../../Preview/FileDetailView"; +import { OperationContext, type OriginState } from "../context"; import useLongPress, { elipses, getBackgroundRowColor, } from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; -import { OperationContext, type OriginState } from "../context"; type Pagination = { totalCount: number; diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index 33d33199f..0ae5f2469 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -8,7 +8,7 @@ import { Split, SplitItem, } from "@patternfly/react-core"; -import { useQuery, useQueryClient } from "@tanstack/react-query"; +import { useQuery } from "@tanstack/react-query"; import { format } from "date-fns"; import { isEmpty } from "lodash"; import { useContext } from "react"; diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 6f328a25e..eea1e26a0 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -23,6 +23,7 @@ import React, { useState, } from "react"; import { useDispatch } from "react-redux"; +import { useLocation } from "react-router"; import { getFileName } from "../../../api/common"; import { removeSelectedPayload } from "../../../store/cart/cartSlice"; import { useTypedSelector } from "../../../store/hooks"; @@ -37,11 +38,10 @@ import { MergeIcon, ShareIcon, } from "../../Icons"; -import { useFolderOperations } from "../utils/useOperations"; -import "./Operations.css"; -import { useLocation } from "react-router"; import { type OriginState, useOperationsContext } from "../context"; +import { useFolderOperations } from "../utils/useOperations"; import LayoutSwitch from "./LayoutSwitch"; +import "./Operations.css"; export type AdditionalValues = { share: { From 6805968c7b32765098fafd02afdcd87f4fa8b6c4 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 26 Aug 2024 12:15:47 -0400 Subject: [PATCH 132/337] feat: Update to folder upload statuses --- package.json | 1 + src/store/cart/uploadSaga.ts | 19 +++++++++++++++++++ tsconfig.node.json | 2 +- vite.config.ts | 1 + 4 files changed, 22 insertions(+), 1 deletion(-) diff --git a/package.json b/package.json index 54afd19f5..ff124180e 100644 --- a/package.json +++ b/package.json @@ -8,6 +8,7 @@ "dev": "npm run dev:local", "dev:local": "npm run test:prepare && vite", "dev:public": "vite -c testing/publicCUBE/vite.config.ts", + "dev:metal": "vite", "build": "vite build", "test": "vitest", "__test:prepare:comment": "# test:prepare runs CUBE locally and loads sample DICOM data into the PACS.", diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index 7c9cb99f8..4492690bd 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -85,6 +85,24 @@ function* uploadFileBatch( let lastError = ""; const folderController = new AbortController(); + // Immediately set a status to indicate that the upload has started + if (isFolder) { + // Immediately show the upload status for folders, as calculating the status for batched uploads may take time, + // and the UI won't provide any notification during that period. + const name = files[0].webkitRelativePath; + const fileName = name.split("/")[0]; + yield put( + setFolderUploadStatus({ + step: "Upload Started", + fileName: fileName, + totalCount: totalFiles, + currentCount: uploadedFilesCount, + controller: folderController, + path: currentPath, + type: "folder", + }), + ); + } for (const batch of batches) { yield all( batch.map((file) => { @@ -96,6 +114,7 @@ function* uploadFileBatch( formData.append("fname", file, name); const controller = new AbortController(); + const config = { headers: { Authorization: `Token ${client.auth.token}` }, signal: isFolder ? folderController.signal : controller.signal, diff --git a/tsconfig.node.json b/tsconfig.node.json index 1c1f96d2b..1416f2aad 100644 --- a/tsconfig.node.json +++ b/tsconfig.node.json @@ -4,7 +4,7 @@ "lib": ["ES2023"], "module": "ESNext", "skipLibCheck": true, - + "composite": true, "moduleResolution": "bundler", "noImplicitAny": true, "allowSyntheticDefaultImports": true diff --git a/vite.config.ts b/vite.config.ts index 3dc74396d..9680c194d 100644 --- a/vite.config.ts +++ b/vite.config.ts @@ -26,6 +26,7 @@ export default defineConfig({ // workaround for "Cornerstone3D tools does not build with vite" // https://github.com/cornerstonejs/cornerstone3D/issues/1071 "@cornerstonejs/tools": "@cornerstonejs/tools/dist/umd/index.js", + fs: "rollup-plugin-node-builtins", }, }, }); From 489e0a420fa0ac7507f115973d8a2f112d17c116 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 26 Aug 2024 16:15:14 -0400 Subject: [PATCH 133/337] feat: Uploading a file or a folder in the feeds list page creates a new feed --- src/components/NewLibrary/components/Cart.tsx | 151 ++++---- .../NewLibrary/components/ContextMenu.tsx | 7 +- .../NewLibrary/components/Operations.tsx | 278 +++++++------- src/components/NewLibrary/context/index.tsx | 1 + src/components/NewLibrary/utils/longpress.tsx | 6 +- .../NewLibrary/utils/useOperations.tsx | 38 +- src/store/cart/downloadSaga.ts | 11 +- src/store/cart/types.ts | 2 + src/store/cart/uploadSaga.ts | 339 +++++++++++++----- 9 files changed, 520 insertions(+), 313 deletions(-) diff --git a/src/components/NewLibrary/components/Cart.tsx b/src/components/NewLibrary/components/Cart.tsx index f44d9481c..ff35d0906 100644 --- a/src/components/NewLibrary/components/Cart.tsx +++ b/src/components/NewLibrary/components/Cart.tsx @@ -183,89 +183,102 @@ const Cart = () => { ( - - {} - , - status.progress === 100 || - status.currentStep === "UploadComplete" ? ( - - ) : status.currentStep.includes("Cancelled") || - status.currentStep.startsWith("Error") ? ( - - ) : ( - - ), - , - , - ]} - > - } - title={} - /> - - )} + renderItem={([name, status]) => { + const isError = + status.currentStep.includes("Cancelled") || + status.currentStep.startsWith("Error"); + const isComplete = + status.progress === 100 && status.currentStep === "Upload Complete"; + return ( + + {} + , + isComplete ? ( + + ) : isError ? ( + + ) : ( + + ), + , + , + ]} + > + } + title={} + /> + + ); + }} /> { + const isError = + status.currentStep.includes("Cancelled") || + status.currentStep.startsWith("Error"); + const isComplete = + status.done === status.total && + status.currentStep === "Upload Complete"; return ( {status.currentStep}, - status.done === status.total || - status.currentStep === "UploadComplete" ? ( + isComplete ? ( - ) : status.currentStep.includes("Cancelled") || - status.currentStep.startsWith("Error") ? ( + ) : isError ? ( { {status.done}/{status.total} ), - , + , - - - {indicators.isError && ( - - )} - - - ); -}; - const items = [ { key: "newFolder", label: "New Folder" }, { key: "fileUpload", label: "File Upload" }, @@ -193,13 +69,10 @@ const items = [ ]; const Operations = React.forwardRef((props: OperationProps, ref) => { - const { invalidateQueries } = useOperationsContext(); const location = useLocation(); const { origin, computedPath, folderList, customStyle, customClassName } = props; - const dispatch = useDispatch(); - const { modalInfo, userError, @@ -212,7 +85,12 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { contextHolder, setUserErrors, setModalInfo, - } = useFolderOperations(origin, computedPath, folderList); + } = useFolderOperations( + origin, + computedPath, + folderList, + location.pathname === "/feeds", + ); useImperativeHandle(ref, () => ({ triggerFileUpload: () => { @@ -223,25 +101,9 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { }, })); - const { selectedPaths, fileUploadStatus, folderUploadStatus } = - useTypedSelector((state) => state.cart); + const { selectedPaths } = useTypedSelector((state) => state.cart); const selectedPathsCount = selectedPaths.length; - useEffect(() => { - // Check if any file or folder upload has completed - const isUploadComplete = (status: any) => - status.currentStep === "Upload Complete"; - - const hasFileUploadCompleted = - Object.values(fileUploadStatus).some(isUploadComplete); - const hasFolderUploadCompleted = - Object.values(folderUploadStatus).some(isUploadComplete); - - if (hasFileUploadCompleted || hasFolderUploadCompleted) { - invalidateQueries(); - } - }, [fileUploadStatus, folderUploadStatus, origin]); - const renderOperationButton = ( icon: React.ReactNode, operationKey: string, @@ -452,3 +314,127 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { }); export default Operations; + +interface AddModalProps { + operationType: string; + isOpen: boolean; + onClose: () => void; + onSubmit: (inputValue: string, additionalValues?: AdditionalValues) => void; + modalTitle: string; + inputLabel: string; + indicators: { + isPending: boolean; + isError: boolean; + error: DefaultError | null; + clearErrors: () => void; + }; +} + +export const AddModal = (props: AddModalProps) => { + const { + isOpen, + onClose, + onSubmit, + modalTitle, + inputLabel, + indicators, + operationType, + } = props; + const [inputValue, setInputValue] = useState(""); + const [additionalValues, setAdditionalValues] = useState({ + share: { + read: false, + write: true, + }, + }); + + const handleClose = () => { + setInputValue(""); + onClose(); + }; + + useEffect(() => { + async function fetchUsers() {} + if (modalTitle === "Share this Folder") { + fetchUsers(); + } + }, [modalTitle]); + + return ( + +
+ + setInputValue(value)} + onKeyDown={(e) => { + if (e.key === "Enter") { + e.preventDefault(); + onSubmit(inputValue); + } + }} + aria-label={inputLabel} + placeholder={inputLabel} + /> + + {operationType === "share" && ( + + { + setAdditionalValues({ + ...additionalValues, + share: { + ...additionalValues?.share, + read: checked, + }, + }); + }} + /> + { + setAdditionalValues({ + ...additionalValues, + share: { + ...additionalValues?.share, + write: checked, + }, + }); + }} + /> + + )} + + + + + + {indicators.isError && ( + + )} + + + ); +}; diff --git a/src/components/NewLibrary/context/index.tsx b/src/components/NewLibrary/context/index.tsx index 2d4dbc391..f9c1749c0 100644 --- a/src/components/NewLibrary/context/index.tsx +++ b/src/components/NewLibrary/context/index.tsx @@ -48,6 +48,7 @@ export const OperationsProvider: React.FC< const type = originRef.current?.type; if (!type) return; + switch (type) { case OperationContext.LIBRARY: queryClient.refetchQueries({ diff --git a/src/components/NewLibrary/utils/longpress.tsx b/src/components/NewLibrary/utils/longpress.tsx index 43935cd7b..c94dee588 100644 --- a/src/components/NewLibrary/utils/longpress.tsx +++ b/src/components/NewLibrary/utils/longpress.tsx @@ -153,12 +153,16 @@ export function TitleNameClipped({ ); } -export function ShowInFolder({ path }: { path: string }) { +export function ShowInFolder({ + path, + isError, +}: { path: string; isError: boolean }) { const navigate = useNavigate(); const dispatch = useDispatch(); return ( , - ]} - > - } - title={} - /> - - ); - }} - /> - { - const isError = - status.currentStep.includes("Cancelled") || - status.currentStep.startsWith("Error"); - const isComplete = - status.done === status.total && - status.currentStep === "Upload Complete"; - return ( - {status.currentStep}, - isComplete ? ( - - ) : isError ? ( - - ) : ( -
- {status.done}/{status.total} -
- ), - , - , - ]} - > - } - title={} - /> - - ); - }} + + + {isEmpty(folderUploadStatus) && isEmpty(fileUploadStatus) && isEmpty(fileDownloadStatus) && @@ -341,6 +211,9 @@ const Cart = () => { export default Cart; +/************************************************ */ +/* Utility Components for the cart */ +/*********************************************** */ export const Status = ({ currentStatus, }: { @@ -367,3 +240,114 @@ export const Status = ({ return currentStatus ? : null; } }; + +type UploadStatusProp = FileUpload | FolderUpload; +interface UploadListProps { + uploadStatus: UploadStatusProp; + type: "file" | "folder"; + dispatch: AppDispatch; +} +const UploadList: React.FC = ({ + uploadStatus, + type, + dispatch, +}) => ( + ( + + )} + /> +); + +interface UploadStatusProps { + status: FileUploadObject | FolderUploadObject; + type: "file" | "folder"; + name: string; + dispatch: AppDispatch; +} +const UploadStatus: React.FC = ({ + status, + type, + name, + dispatch, +}) => { + const isError = + status.currentStep.includes("Cancelled") || + status.currentStep.startsWith("Error"); + const isComplete = + type === "file" + ? (status as FileUploadObject).progress === 100 && + status.currentStep === "Upload Complete" + : (status as FolderUploadObject).done === + (status as FolderUploadObject).total && + status.currentStep === "Upload Complete"; + + const handleAction = () => { + if (status.currentStep === "Uploading...") { + dispatch(cancelUpload({ type, id: name })); + } else { + dispatch(clearUploadState({ type, id: name })); + } + }; + + return ( + + + , + isComplete ? ( + + ) : isError ? ( + + ) : type === "file" ? ( + + ) : ( +
+ {(status as FolderUploadObject).done}/ + {(status as FolderUploadObject).total} +
+ ), + , + , + ]} + > + : } + title={} + /> + + ); +}; From 4ca3a1d0eb8d643a00c368c1bcf51c0009699837 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 26 Aug 2024 16:56:56 -0400 Subject: [PATCH 136/337] refactor: cleanup --- src/components/Common/index.tsx | 8 ++++++-- src/components/NewLibrary/components/LibraryTable.tsx | 4 +++- 2 files changed, 9 insertions(+), 3 deletions(-) diff --git a/src/components/Common/index.tsx b/src/components/Common/index.tsx index e81c9cdb5..3e2f86c0a 100644 --- a/src/components/Common/index.tsx +++ b/src/components/Common/index.tsx @@ -363,9 +363,13 @@ export const ClipboardCopyFixed = ({ ); }; -export const getIcon = (type: string, isDarkTheme: boolean) => { +export const getIcon = ( + type: string, + isDarkTheme: boolean, + customStyle?: React.CSSProperties, +) => { const color = isDarkTheme ? "#FFFFFF" : "#000000"; // white for dark theme, black for light theme - const iconStyle = { color }; + const iconStyle = { color, ...customStyle }; switch (type.toLowerCase()) { case "dir": return ; diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 51f770ad4..3037db207 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -80,7 +80,9 @@ const LibraryTable: React.FunctionComponent = ( } }); const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); - const icon = getIcon(type, isDarkTheme); + const icon = getIcon(type, isDarkTheme, { + marginRight: "0.25em", + }); const handleItem = ( item: From fdae3c634955d5828b7802a593ff652cbbde497d Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Tue, 27 Aug 2024 10:41:47 -0400 Subject: [PATCH 137/337] feat: Update the Search Bar in the Feeds Table --- package-lock.json | 8 +-- package.json | 2 +- .../FeedOutputBrowser/FileBrowser.tsx | 1 + src/components/Feeds/FeedListView.tsx | 16 ++++- src/components/Feeds/Feeds.css | 1 + src/components/Feeds/FeedsSearch.tsx | 58 +++++++++++++++++++ .../NewLibrary/components/FolderCard.tsx | 2 +- 7 files changed, 80 insertions(+), 8 deletions(-) create mode 100644 src/components/Feeds/FeedsSearch.tsx diff --git a/package-lock.json b/package-lock.json index a94d2f1f1..a080cbab4 100644 --- a/package-lock.json +++ b/package-lock.json @@ -25,7 +25,7 @@ "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", "@types/d3-zoom": "^3.0.8", - "antd": "^5.20.2", + "antd": "^5.20.3", "axios": "^1.7.2", "d3-hierarchy": "^1.1.9", "d3-selection": "^3.0.0", @@ -2428,9 +2428,9 @@ } }, "node_modules/antd": { - "version": "5.20.2", - "resolved": "https://registry.npmjs.org/antd/-/antd-5.20.2.tgz", - "integrity": "sha512-9d6Bs5ZKIV+JhB0eD7KxYnIfnhUh86kNtTGIuNiIxHFUhbuyT1DXN2SuMksDmtSfuRYZ82/C4hq+OJjWNNbmHg==", + "version": "5.20.3", + "resolved": "https://registry.npmjs.org/antd/-/antd-5.20.3.tgz", + "integrity": "sha512-v2s5LJlhuccIKLT17ESXQDkiQJdPK4jXg4x2pmSSRlrKXAxfftn8Zhd/7pdF3qR3OkwheQpSRjynrNZKp9Tgkg==", "license": "MIT", "dependencies": { "@ant-design/colors": "^7.1.0", diff --git a/package.json b/package.json index ff124180e..7cf98cf7e 100644 --- a/package.json +++ b/package.json @@ -55,7 +55,7 @@ "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", "@types/d3-zoom": "^3.0.8", - "antd": "^5.20.2", + "antd": "^5.20.3", "axios": "^1.7.2", "d3-hierarchy": "^1.1.9", "d3-selection": "^3.0.0", diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index a9ec311a4..58078adfc 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -237,6 +237,7 @@ const FileBrowser = (props: FileBrowserProps) => { }} icon={icon} variant="link" + style={{ padding: "0" }} > {fileName} diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index b3f3d5fbc..a7bc2350c 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -4,12 +4,12 @@ import { Button, Checkbox, EmptyState, - Title, EmptyStateIcon, EmptyStateVariant, PageSection, Pagination, Skeleton, + Title, ToggleGroup, ToggleGroupItem, type ToggleGroupItemProps, @@ -18,6 +18,7 @@ import { import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; import { useQuery } from "@tanstack/react-query"; import { format } from "date-fns"; +import { debounce } from "lodash"; import type React from "react"; import { useContext, useEffect, useState } from "react"; import { useNavigate } from "react-router"; @@ -31,16 +32,17 @@ import { ThemeContext } from "../DarkTheme/useTheme"; import { SearchIcon } from "../Icons"; import { FolderContextMenu } from "../NewLibrary/components/ContextMenu"; import Operations from "../NewLibrary/components/Operations"; +import { OperationContext } from "../NewLibrary/context"; import useLongPress from "../NewLibrary/utils/longpress"; import { PipelineProvider } from "../PipelinesCopy/context"; import WrapperConnect from "../Wrapper"; +import FeedSearch from "./FeedsSearch"; import { useSearchQueryParams } from "./usePaginate"; import { fetchFeeds, fetchPublicFeeds, getPluginInstanceDetails, } from "./utilties"; -import { OperationContext } from "../NewLibrary/context"; const { Paragraph } = Typography; @@ -99,6 +101,10 @@ const TableSelectable: React.FC = () => { ); }; + const handleFilterChange = debounce((search: string, searchType: string) => { + navigate(`/feeds?search=${search}&searchType=${searchType}&type=${type}`); + }, 50); + const onExampleTypeChange: ToggleGroupItemProps["onChange"] = (event) => { const id = event.currentTarget.id; navigate( @@ -214,6 +220,12 @@ const TableSelectable: React.FC = () => { }} customStyle={{ toolbarItem: { paddingInlineStart: "0" } }} /> + {loadingFeedState ? ( ) : feedsToDisplay.length > 0 ? ( diff --git a/src/components/Feeds/Feeds.css b/src/components/Feeds/Feeds.css index 311c11f98..086603935 100644 --- a/src/components/Feeds/Feeds.css +++ b/src/components/Feeds/Feeds.css @@ -5,6 +5,7 @@ align-items: center; justify-content: space-between; padding-block-end: 0 !important; + min-height:60px } .feed-list .error { diff --git a/src/components/Feeds/FeedsSearch.tsx b/src/components/Feeds/FeedsSearch.tsx new file mode 100644 index 000000000..bee4f9c0e --- /dev/null +++ b/src/components/Feeds/FeedsSearch.tsx @@ -0,0 +1,58 @@ +import { Space, Input, Select } from "antd"; +const { Search } = Input; + +const options = [ + { + value: "name", + label: "Name", + }, + { + value: "id", + label: "ID", + }, + { + value: "name_exact", + label: "Exact Match", + }, + + { + value: "name_startsWith", + label: "Match Starts With", + }, +]; + +interface FeedSearchProps { + search: string; + searchType: string; + onSearch: (search: string, searchType: string) => void; + loading: boolean; +} + +const FeedSearch = ({ + search, + searchType, + onSearch, + loading, +}: FeedSearchProps) => { + return ( + + { onSearch(search, value); @@ -50,6 +50,7 @@ const FeedSearch = ({ value={search} loading={loading && search.length > 0} enterButton="Search" + placeholder="Search in Analyses" /> ); diff --git a/src/components/Feeds/useFeedListData.tsx b/src/components/Feeds/useFeedListData.tsx new file mode 100644 index 000000000..8c0383cbc --- /dev/null +++ b/src/components/Feeds/useFeedListData.tsx @@ -0,0 +1,55 @@ +import { useQuery } from "@tanstack/react-query"; +import { useTypedSelector } from "../../store/hooks"; +import { fetchFeeds, fetchPublicFeeds } from "./utilties"; // Your API functions +import { useLocation } from "react-router"; +import { useMemo } from "react"; + +export function useSearchQueryParams() { + const { search } = useLocation(); + return useMemo(() => new URLSearchParams(search), [search]); +} + +const useSearchQuery = (query: URLSearchParams) => ({ + page: query.get("page") || "1", + search: query.get("search") || "", + searchType: query.get("searchType") || "name", + perPage: query.get("perPage") || "18", + type: query.get("type") || "public", +}); + +export const useFeedListData = () => { + const query = useSearchQueryParams(); + const isLoggedIn = useTypedSelector((state) => state.user.isLoggedIn); + const { perPage, page, type, search, searchType } = useSearchQuery(query); + + const { data, isLoading, isFetching } = useQuery({ + queryKey: ["feeds", perPage, page, type, search, searchType], + queryFn: () => fetchFeeds({ perPage, page, type, search, searchType }), + enabled: type === "private" || isLoggedIn, + }); + + const { + data: publicFeeds, + isLoading: publicFeedLoading, + isFetching: publicFeedFetching, + } = useQuery({ + queryKey: ["publicFeeds", perPage, page, type, search, searchType], + queryFn: () => + fetchPublicFeeds({ perPage, page, type, search, searchType }), + enabled: type === "public" || !isLoggedIn, + }); + + const feedCount = + type === "private" ? data?.totalFeedsCount : publicFeeds?.totalFeedsCount; + + const loadingFeedState = + isLoading || isFetching || publicFeedLoading || publicFeedFetching; + + return { + feedCount, + loadingFeedState, + feedsToDisplay: + type === "private" ? data?.feeds || [] : publicFeeds?.feeds || [], + searchFolderData: { perPage, page, type, search, searchType }, + }; +}; diff --git a/src/components/Feeds/useFetchFeed.tsx b/src/components/Feeds/useFetchFeed.tsx new file mode 100644 index 000000000..706e9c020 --- /dev/null +++ b/src/components/Feeds/useFetchFeed.tsx @@ -0,0 +1,60 @@ +import { useQuery } from "@tanstack/react-query"; +import { useEffect } from "react"; +import { useNavigate } from "react-router"; +import type { Feed } from "@fnndsc/chrisapi"; +import { fetchAuthenticatedFeed, fetchPublicFeed } from "./utilties"; +import { notification } from "../Antd"; + +export const useFetchFeed = ( + id: string | undefined, + type: string | null, + isLoggedIn?: boolean, +) => { + const navigate = useNavigate(); + const [api, contextHolder] = notification.useNotification(); + + const { data: publicFeed, isError: isPublicFeedError } = useQuery({ + queryKey: ["publicFeed", id], + queryFn: () => fetchPublicFeed(id), + enabled: type === "public", + }); + + const { + data: privateFeed, + isError: isPrivateFeedError, + error: privateFeedError, + } = useQuery({ + queryKey: ["authenticatedFeed", id], + queryFn: () => fetchAuthenticatedFeed(id), + enabled: type === "private" && isLoggedIn, + }); + + useEffect(() => { + if (!type || (type === "private" && !isLoggedIn)) { + const redirectTo = encodeURIComponent(window.location.href); + navigate(`/login?redirectTo=${redirectTo}`); + } + }, [type, isLoggedIn, navigate]); + + useEffect(() => { + if (isPrivateFeedError) { + api.error({ + message: + privateFeedError?.message || "Failed to load the private feed.", + duration: 1.5, + }); + const timer = setTimeout(() => { + navigate("/feeds?type=private"); + }, 2500); + return () => clearTimeout(timer); + } + }, [isPrivateFeedError, privateFeedError, api, navigate]); + + const feed: Feed | undefined = privateFeed || publicFeed; + + return { + feed, + isError: isPrivateFeedError || isPublicFeedError, + contextHolder, + }; +}; diff --git a/src/components/Feeds/usePaginate.tsx b/src/components/Feeds/usePaginate.tsx index 0fb2de175..a932b466e 100644 --- a/src/components/Feeds/usePaginate.tsx +++ b/src/components/Feeds/usePaginate.tsx @@ -12,7 +12,7 @@ export interface FilterState { export const usePaginate = () => { const [filterState, setFilterState] = useState({ - perPage: 16, + perPage: 18, page: 1, search: "", searchType: "name", diff --git a/src/components/Wrapper/Header.tsx b/src/components/Wrapper/Header.tsx index c2ea37b7f..cc7d72ce9 100644 --- a/src/components/Wrapper/Header.tsx +++ b/src/components/Wrapper/Header.tsx @@ -1,24 +1,13 @@ -import * as React from "react"; import { Masthead, - MastheadToggle, - MastheadMain, - MastheadBrand, MastheadContent, + MastheadToggle, PageToggleButton, - Brand, } from "@patternfly/react-core"; -import brandImg from "../../assets/logo_chris_dashboard.png"; -import BarsIcon from "@patternfly/react-icons/dist/esm/icons/bars-icon"; -import ToolbarComponent from "./Toolbar"; -import type { IUserState } from "../../store/user/userSlice"; import { useTypedSelector } from "../../store/hooks"; - -const brand = ( - - - -); +import type { IUserState } from "../../store/user/userSlice"; +import { BarsIcon } from "../Icons"; +import ToolbarComponent from "./Toolbar"; interface IHeaderProps { user: IUserState; @@ -27,18 +16,20 @@ interface IHeaderProps { export default function Header(props: IHeaderProps) { const showToolbar = useTypedSelector((state) => state.feed.showToolbar); + const isNavOpen = useTypedSelector((state) => state.ui.isNavOpen); // Get the sidebar open state + + // Apply margin-left to MastheadContent if sidebar is open + const mastheadContentStyle = { + marginLeft: isNavOpen ? "12rem" : "0", // Adjust based on sidebar state + }; const pageToolbar = ( ); return ( - - + + - - - {brand} - - - {pageToolbar} + + {pageToolbar} + ); } diff --git a/src/components/Wrapper/Sidebar.tsx b/src/components/Wrapper/Sidebar.tsx index aee7ace62..e19434a95 100644 --- a/src/components/Wrapper/Sidebar.tsx +++ b/src/components/Wrapper/Sidebar.tsx @@ -5,14 +5,15 @@ import { NavList, PageSidebar, PageSidebarBody, + Brand, } from "@patternfly/react-core"; import { useQueryClient } from "@tanstack/react-query"; import { isEmpty } from "lodash"; -import type * as React from "react"; import { Link } from "react-router-dom"; import { useTypedSelector } from "../../store/hooks"; import type { IUiState } from "../../store/ui/uiSlice"; import type { IUserState } from "../../store/user/userSlice"; +import brandImg from "../../assets/logo_chris_dashboard.png"; type AllProps = IUiState & IUserState; @@ -98,11 +99,20 @@ const Sidebar: React.FC = () => { return ( - {PageNav} + +
+
{PageNav}
+ +
+ ); }; +export default Sidebar; + const AnonSidebarImpl: React.FC = ({ isNavOpen, sidebarActiveItem, @@ -141,11 +151,18 @@ const AnonSidebarImpl: React.FC = ({ return ( - {PageNav} + +
+
{PageNav}
+
+ +
+
+ ); }; export { AnonSidebarImpl as AnonSidebar }; - -export default Sidebar; diff --git a/src/components/Wrapper/TitleComponent.tsx b/src/components/Wrapper/TitleComponent.tsx new file mode 100644 index 000000000..152624ba1 --- /dev/null +++ b/src/components/Wrapper/TitleComponent.tsx @@ -0,0 +1,68 @@ +import { useLocation } from "react-router"; + +import { Typography } from "antd"; +import { InfoIcon } from "../Common"; +const { Paragraph } = Typography; +import { matchPath } from "react-router"; +import { + useFeedListData, + useSearchQueryParams, +} from "../Feeds/useFeedListData"; +import { useFetchFeed } from "../Feeds/useFetchFeed"; +import { useTypedSelector } from "../../store/hooks"; +import { CodeBranchIcon } from "../Icons"; + +const FeedsNameComponent = () => { + const { feedCount, loadingFeedState } = useFeedListData(); + + return ( + + Analyses (aka ChRIS feeds) are computational experiments where data + are organized and processed by ChRIS plugins. In this view you may + view your analyses and also the ones shared with you. + + } + /> + ); +}; + +const { Title } = Typography; +const FeedsDetailComponent = ({ id }: { id?: string }) => { + const query = useSearchQueryParams(); + const type = query.get("type"); + const isLoggedIn = useTypedSelector((state) => state.user.isLoggedIn); + + const { feed } = useFetchFeed(id, type, isLoggedIn); + + return ( + + <CodeBranchIcon style={{ marginRight: "0.25em" }} /> + {feed?.data.name} + + ); +}; + +const TitleComponent = () => { + const location = useLocation(); + + const match = matchPath("/feeds/:id", location.pathname); + + if (match) { + const { id } = match.params; + return ; + } + + return location.pathname === "/feeds" ? : null; +}; + +export default TitleComponent; diff --git a/src/components/Wrapper/Toolbar.tsx b/src/components/Wrapper/Toolbar.tsx index a94fe2919..28feae7f2 100644 --- a/src/components/Wrapper/Toolbar.tsx +++ b/src/components/Wrapper/Toolbar.tsx @@ -3,11 +3,10 @@ import { Dropdown, DropdownItem, DropdownList, + Flex, + FlexItem, MenuToggle, Switch, - Toolbar, - ToolbarGroup, - ToolbarItem, } from "@patternfly/react-core"; import { useQueryClient } from "@tanstack/react-query"; import * as React from "react"; @@ -21,6 +20,7 @@ import { ThemeContext } from "../DarkTheme/useTheme"; import FeedDetails from "../FeedDetails"; import CartNotify from "./CartNotify"; import { clearCartOnLogout } from "../../store/cart/cartSlice"; +import TitleComponent from "./TitleComponent"; type ToolbarComponentProps = { showToolbar: boolean; @@ -45,9 +45,8 @@ const ToolbarComponent: React.FC = ( const handleChange = () => { toggleTheme(); }; - // Description: Logout user + const onLogout = () => { - // Some additional cleanup of active resources before logging out queryClient.clear(); ChrisAPIClient.setIsTokenAuthorized(false); removeCookie("username", { @@ -84,72 +83,81 @@ const ToolbarComponent: React.FC = ( Sign out , ]; + return ( - - - {/* The Feeds View Page shows additional contents in the navigation bar */} + + + + + {/* Center */} + {props.showToolbar && !fullScreen && } - - - - - - - - + - {token ? ( - - onDropdownToggle()} - isOpen={dropdownOpen} - toggle={(toggleRef) => { - return ( + {/* Right section */} + + + + + + + + + + {token ? ( + ( {username} - ); - }} - > - {userDropdownItems} - - - ) : ( - <> - - - - - - - - - )} - - + {userDropdownItems} + + ) : ( + <> + + + + )} + + + + ); }; diff --git a/src/components/Wrapper/wrapper.css b/src/components/Wrapper/wrapper.css index d5cc61ef1..8b1378917 100644 --- a/src/components/Wrapper/wrapper.css +++ b/src/components/Wrapper/wrapper.css @@ -1,56 +1 @@ -/* YourComponent.css */ -/* Styling for the Toolbar component */ -.toolbar { - display: flex; - flex-direction: row; - justify-content: center; - align-items: center; -} - -/* Styling for the first ToolbarGroup component */ -.feed-details { - margin-left: 40em; -} - -/* Media queries for responsive design */ -@media (max-width: 1880px) { - .feed-details { - margin-left: 15em; - } -} - -/* Media queries for responsive design */ -@media (max-width: 1200px) { - .feed-details { - margin-left: 10em; - } -} - -@media (max-width: 992px) { - .feed-details { - margin-left: 5em; - } -} - -/* Styling for the second ToolbarGroup component */ -.authentication { - margin-left: auto; -} - -/* Additional styling for responsive design if needed */ -@media (max-width: 912px) { - .toolbar { - flex-direction: column; - align-items: stretch; - } - - .feed-details { - margin-left: 0; - margin-bottom: 0.25rem; /* Add margin to separate rows */ - } - - .authentication { - margin-left: 0; - } -} diff --git a/src/store/configureStore.ts b/src/store/configureStore.ts index 6a9061728..c292b4b1c 100644 --- a/src/store/configureStore.ts +++ b/src/store/configureStore.ts @@ -39,7 +39,7 @@ function configureAppStore() { }, middleware: (getDefaultMiddleware) => getDefaultMiddleware({ - thunk: true, // Disabling thunk since we're using sagas + thunk: true, serializableCheck: false, // Disable serializable check if necessary }).concat(logger, sagaMiddleware), devTools: import.meta.env.NODE_ENV !== "production", From 7ba53c93ecd58080f4c3dc23a0017e680b66f8c7 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 28 Aug 2024 12:00:12 -0400 Subject: [PATCH 141/337] feat: Update File and Folder Uploads --- package-lock.json | 3357 +++++++---------- package.json | 3 +- .../NewLibrary/components/Operations.tsx | 43 +- .../NewLibrary/utils/useOperations.tsx | 1 + 4 files changed, 1370 insertions(+), 2034 deletions(-) diff --git a/package-lock.json b/package-lock.json index a080cbab4..b824f763f 100644 --- a/package-lock.json +++ b/package-lock.json @@ -20,7 +20,6 @@ "@patternfly/react-log-viewer": "^5.2.0", "@patternfly/react-table": "^5.3.4", "@react-hook/resize-observer": "^2.0.1", - "@redux-devtools/extension": "^3.3.0", "@reduxjs/toolkit": "^2.2.7", "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", @@ -75,6 +74,7 @@ "@biomejs/biome": "1.8.3", "@faker-js/faker": "^8.4.0", "@playwright/test": "^1.41.2", + "@redux-devtools/extension": "^3.3.0", "@types/d3-hierarchy": "^1.1.7", "@types/d3-selection": "^1.4.3", "@types/lodash": "^4.14.202", @@ -99,8 +99,6 @@ }, "node_modules/@ampproject/remapping": { "version": "2.3.0", - "resolved": "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.3.0.tgz", - "integrity": "sha512-30iZtAPgz+LTIYoeivqYo853f02jBYSd5uGnGpkFV0M3xOt9aN73erkgYAmZU43x4VfqcnLxW9Kpg3R5LC4YYw==", "license": "Apache-2.0", "dependencies": { "@jridgewell/gen-mapping": "^0.3.5", @@ -112,8 +110,6 @@ }, "node_modules/@ant-design/colors": { "version": "7.1.0", - "resolved": "https://registry.npmjs.org/@ant-design/colors/-/colors-7.1.0.tgz", - "integrity": "sha512-MMoDGWn1y9LdQJQSHiCC20x3uZ3CwQnv9QMz6pCmJOrqdgM9YxsoVVY0wtrdXbmfSgnV0KNk6zi09NAhMR2jvg==", "license": "MIT", "dependencies": { "@ctrl/tinycolor": "^3.6.1" @@ -121,8 +117,6 @@ }, "node_modules/@ant-design/cssinjs": { "version": "1.21.1", - "resolved": "https://registry.npmjs.org/@ant-design/cssinjs/-/cssinjs-1.21.1.tgz", - "integrity": "sha512-tyWnlK+XH7Bumd0byfbCiZNK43HEubMoCcu9VxwsAwiHdHTgWa+tMN0/yvxa+e8EzuFP1WdUNNPclRpVtD33lg==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.11.1", @@ -140,8 +134,6 @@ }, "node_modules/@ant-design/cssinjs-utils": { "version": "1.0.3", - "resolved": "https://registry.npmjs.org/@ant-design/cssinjs-utils/-/cssinjs-utils-1.0.3.tgz", - "integrity": "sha512-BrztZZKuoYcJK8uEH40ylBemf/Mu/QPiDos56g2bv6eUoniQkgQHOCOvA3+pncoFO1TaS8xcUCIqGzDA0I+ZVQ==", "license": "MIT", "dependencies": { "@ant-design/cssinjs": "^1.21.0", @@ -155,8 +147,6 @@ }, "node_modules/@ant-design/cssinjs-utils/node_modules/@babel/runtime": { "version": "7.25.4", - "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.4.tgz", - "integrity": "sha512-DSgLeL/FNcpXuzav5wfYvHCGvynXkJbn3Zvc3823AEe9nPwW9IK4UoCSS5yGymmQzN0pCPvivtgS6/8U2kkm1w==", "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" @@ -167,8 +157,6 @@ }, "node_modules/@ant-design/fast-color": { "version": "2.0.6", - "resolved": "https://registry.npmjs.org/@ant-design/fast-color/-/fast-color-2.0.6.tgz", - "integrity": "sha512-y2217gk4NqL35giHl72o6Zzqji9O7vHh9YmhUVkPtAOpoTCH4uWxo/pr4VE8t0+ChEPs0qo4eJRC5Q1eXWo3vA==", "license": "MIT", "dependencies": { "@babel/runtime": "^7.24.7" @@ -179,8 +167,6 @@ }, "node_modules/@ant-design/fast-color/node_modules/@babel/runtime": { "version": "7.25.4", - "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.25.4.tgz", - "integrity": "sha512-DSgLeL/FNcpXuzav5wfYvHCGvynXkJbn3Zvc3823AEe9nPwW9IK4UoCSS5yGymmQzN0pCPvivtgS6/8U2kkm1w==", "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" @@ -191,8 +177,6 @@ }, "node_modules/@ant-design/icons": { "version": "5.4.0", - "resolved": "https://registry.npmjs.org/@ant-design/icons/-/icons-5.4.0.tgz", - "integrity": "sha512-QZbWC5xQYexCI5q4/fehSEkchJr5UGtvAJweT743qKUQQGs9IH2DehNLP49DJ3Ii9m9CijD2HN6fNy3WKhIFdA==", "license": "MIT", "dependencies": { "@ant-design/colors": "^7.0.0", @@ -211,14 +195,10 @@ }, "node_modules/@ant-design/icons-svg": { "version": "4.4.2", - "resolved": 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"version": "3.0.2", - "resolved": "https://registry.npmjs.org/xmlbuilder2/-/xmlbuilder2-3.0.2.tgz", - "integrity": "sha512-h4MUawGY21CTdhV4xm3DG9dgsqyhDkZvVJBx88beqX8wJs3VgyGQgAn5VreHuae6unTQxh115aMK5InCVmOIKw==", "license": "MIT", "dependencies": { "@oozcitak/dom": "1.15.10", @@ -10164,8 +9517,6 @@ }, "node_modules/xmlbuilder2/node_modules/js-yaml": { "version": "3.14.0", - "resolved": "https://registry.npmjs.org/js-yaml/-/js-yaml-3.14.0.tgz", - "integrity": "sha512-/4IbIeHcD9VMHFqDR/gQ7EdZdLimOvW2DdcxFjdyyZ9NsbS+ccrXqVWDtab/lRl5AlUqmpBx8EhPaWR+OtY17A==", "license": "MIT", "dependencies": { "argparse": "^1.0.7", @@ -10177,8 +9528,6 @@ }, "node_modules/xss": { "version": "1.0.14", - "resolved": "https://registry.npmjs.org/xss/-/xss-1.0.14.tgz", - "integrity": "sha512-og7TEJhXvn1a7kzZGQ7ETjdQVS2UfZyTlsEdDOqvQF7GoxNfY+0YLCzBy1kPdsDDx4QuNAonQPddpsn6Xl/7sw==", "license": "MIT", "dependencies": { "commander": "^2.20.3", @@ -10193,14 +9542,10 @@ }, "node_modules/xss/node_modules/commander": { "version": "2.20.3", - "resolved": "https://registry.npmjs.org/commander/-/commander-2.20.3.tgz", - "integrity": "sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ==", "license": "MIT" }, "node_modules/xtend": { "version": "2.2.0", - "resolved": "https://registry.npmjs.org/xtend/-/xtend-2.2.0.tgz", - "integrity": "sha512-SLt5uylT+4aoXxXuwtQp5ZnMMzhDb1Xkg4pEqc00WUJCQifPfV9Ub1VrNhp9kXkrjZD2I2Hl8WnjP37jzZLPZw==", "dev": true, "engines": { "node": ">=0.4" @@ -10208,21 +9553,15 @@ }, "node_modules/y18n": { "version": "4.0.3", - "resolved": "https://registry.npmjs.org/y18n/-/y18n-4.0.3.tgz", - "integrity": "sha512-JKhqTOwSrqNA1NY5lSztJ1GrBiUodLMmIZuLiDaMRJ+itFd+ABVE8XBjOvIWL+rSqNDC74LCSFmlb/U4UZ4hJQ==", "dev": true, "license": "ISC" }, "node_modules/yallist": { "version": "3.1.1", - "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz", - "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==", "license": "ISC" }, "node_modules/yaml": { "version": "1.10.2", - "resolved": "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz", - "integrity": "sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg==", "license": "ISC", "engines": { "node": ">= 6" @@ -10230,8 +9569,6 @@ }, "node_modules/yargs": { "version": "15.4.1", - "resolved": "https://registry.npmjs.org/yargs/-/yargs-15.4.1.tgz", - "integrity": "sha512-aePbxDmcYW++PaqBsJ+HYUFwCdv4LVvdnhBy78E57PIor8/OVvhMrADFFEDh8DHDFRv/O9i3lPhsENjO7QX0+A==", "dev": true, "license": "MIT", "dependencies": { @@ -10253,8 +9590,6 @@ }, "node_modules/yargs-parser": { "version": "18.1.3", - "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-18.1.3.tgz", - "integrity": "sha512-o50j0JeToy/4K6OZcaQmW6lyXXKhq7csREXcDwk2omFPJEwUNOVtJKvmDr9EI1fAJZUyZcRF7kxGBWmRXudrCQ==", "dev": true, "license": "ISC", "dependencies": { diff --git a/package.json b/package.json index 7cf98cf7e..88b897f88 100644 --- a/package.json +++ b/package.json @@ -50,7 +50,7 @@ "@patternfly/react-log-viewer": "^5.2.0", "@patternfly/react-table": "^5.3.4", "@react-hook/resize-observer": "^2.0.1", - "@redux-devtools/extension": "^3.3.0", + "@reduxjs/toolkit": "^2.2.7", "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", @@ -102,6 +102,7 @@ "vite-plugin-babel-macros": "^1.0.6" }, "devDependencies": { + "@redux-devtools/extension": "^3.3.0", "@biomejs/biome": "1.8.3", "@faker-js/faker": "^8.4.0", "@playwright/test": "^1.41.2", diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index d4101e640..8ad8246a3 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -233,25 +233,6 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { ], ); - const modalTypeLabels: Record< - string, - { modalTitle: string; inputLabel: string } - > = { - group: { - modalTitle: "Create a new Group", - inputLabel: "Group Name", - }, - share: { - modalTitle: "Share this Folder", - inputLabel: "User Name", - }, - - default: { - modalTitle: "Create a new Folder", - inputLabel: "Folder Name", - }, - }; - return ( <> { /> @@ -315,6 +295,25 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { export default Operations; +const modalTypeLabels: Record< + string, + { modalTitle: string; inputLabel: string } +> = { + group: { + modalTitle: "Create a new Group", + inputLabel: "Group Name", + }, + share: { + modalTitle: "Share this Folder", + inputLabel: "User Name", + }, + + default: { + modalTitle: "Create a new Folder", + inputLabel: "Folder Name", + }, +}; + interface AddModalProps { operationType: string; isOpen: boolean; diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index e59942b2d..a0f1b3e3d 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -68,6 +68,7 @@ export const useFolderOperations = ( const currentPath = createFeed ? `home/${username}/uploads/${uniqueName}` : computedPath; + (""); dispatch( startUpload({ From f65bb5a4144c6b9b8a63edc747a36da6062bbdec Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 28 Aug 2024 14:49:28 -0400 Subject: [PATCH 142/337] feat: Update how titles are displayed in the ui --- src/components/ComputePage/index.tsx | 20 --- src/components/Dashboard/index.tsx | 33 +--- src/components/NewLibrary/index.tsx | 28 +--- src/components/PluginCatalog/index.tsx | 27 ---- src/components/Store/index.tsx | 64 ++++---- src/components/Wrapper/TitleComponent.tsx | 174 ++++++++++++++++++---- 6 files changed, 176 insertions(+), 170 deletions(-) diff --git a/src/components/ComputePage/index.tsx b/src/components/ComputePage/index.tsx index 656cbef6c..e8aa7376a 100644 --- a/src/components/ComputePage/index.tsx +++ b/src/components/ComputePage/index.tsx @@ -13,26 +13,6 @@ const ComputePage = () => { }, []); return ( - - -

- This page presents the available Compute environments - that are known to ChRIS. These denote computers and - clusters/clouds that can be selected to run various{" "} - plugins and pipelines. The special host{" "} - environment is always available and is the actual server that is - running ChRIS. It is generally not recommended to run intensive - computation on the host environment. Adding new{" "} - Compute to ChRIS is typically enabled by using the - separate ChRIS admin interface. -

- - } - /> - diff --git a/src/components/Dashboard/index.tsx b/src/components/Dashboard/index.tsx index ab38a7415..22c8d59ad 100644 --- a/src/components/Dashboard/index.tsx +++ b/src/components/Dashboard/index.tsx @@ -1,47 +1,16 @@ import React from "react"; -import BUILD_VERSION from "../../getBuildVersion"; import { Grid, GridItem, PageSection } from "@patternfly/react-core"; -import { Typography } from "../Antd"; import WrapperConnect from "../Wrapper"; import { CatalogTile } from "@patternfly/react-catalog-view-extension"; -import { InfoIcon } from "../Common"; import "./dashboard.css"; -const { Paragraph } = Typography; - -interface DashboardProps { - children?: React.ReactNode; -} - -const DashboardPage = (props: DashboardProps) => { - const { children } = props; - +const DashboardPage = () => { React.useEffect(() => { document.title = "Overview"; }, []); return ( - - -

- Retrieve, analyze, and visualize any data using a - powerful cloud computing platform: ChRIS. - Let's get started. -

-

- Build: {BUILD_VERSION} -

- - } - /> - - {children} - - diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index 23dd4ae43..9e4895593 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -163,28 +163,11 @@ const NewLibrary = () => { return ( - - -

- The Library provides a card-focused mechanism for browsing, - viewing, and interacting with data in the ChRIS system. A card - is analogous to a file or folder in a convention filesystem, and - multiple cards can be grouped into a shopping cart to allow for - bulk operations. Simply long press and release a card to add it - to the cart. Bulk operations include: Download (which - will copy all cart contents to your local filesystem),{" "} - Delete (which will permanently remove all data in the - cards from ChRIS), and Create which will seed a new - analysis with a new root node containing each card as a - subdirectory. -

- - } - /> - + { }} computedPath={computedPath} folderList={data?.folderList} + customStyle={{ toolbarItem: { paddingInlineStart: "0" } }} /> { React.useEffect(() => { document.title = "Analysis Catalog"; @@ -15,29 +11,6 @@ const CatalogPage = () => { return ( - - -

- ChRIS is a platform that runs Plugins. A plugin is a - single application (similar to apps on a mobile device). - Examples of ChRIS Plugins are applications that analyze - images (like{" "} - pl-fshack that - runs a neuro image analysis program called{" "} - FreeSurfer). - Other Plugins perform operations like zipping files, - converting medical images from DICOM to jpg, etc. On this page - you can browse Plugins available for you to use. For more - options, consult the{" "} - ChRIS store. -

- - } - /> - diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index 34670f765..169848e96 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -334,54 +334,40 @@ const Store = () => { - +
- -

- This is a global store from where you can install your - plugins. -

- - } - /> You are currently viewing plugins fetched from{" "} {configureStoreValue || import.meta.env.VITE_CHRIS_STORE_URL} +
- - - - { +const { Paragraph, Title } = Typography; + +// Component for displaying name and description +const InfoSection: React.FC<{ title: string; content: React.ReactNode }> = ({ + title, + content, +}) => {content}} />; + +// Feeds name component +const FeedsNameComponent: React.FC = () => { const { feedCount, loadingFeedState } = useFeedListData(); + const feedCountText = + !feedCount && loadingFeedState + ? "Fetching..." + : feedCount === -1 + ? 0 + : feedCount; return ( - - Analyses (aka ChRIS feeds) are computational experiments where data - are organized and processed by ChRIS plugins. In this view you may - view your analyses and also the ones shared with you. - - } + ); }; -const { Title } = Typography; -const FeedsDetailComponent = ({ id }: { id?: string }) => { +// Library name component +const LibraryNameComponent: React.FC = () => ( + + The Library provides a card-focused mechanism for browsing, viewing, and + interacting with data in the ChRIS system. A card is analogous to a file + or folder in a conventional filesystem, and multiple cards can be + grouped into a shopping cart to allow for bulk operations. Simply long + press and release a card to add it to the cart. Bulk operations include:{" "} + Download (which will copy all cart contents to your local + filesystem), Delete (which will permanently remove all data in + the cards from ChRIS), and Create which will seed a new analysis + with a new root node containing each card as a subdirectory. + + } + /> +); + +// Overview name component +const OverviewNameComponent: React.FC = () => ( + + Retrieve, analyze, and visualize any data using a powerful cloud + computing platform: ChRIS. Let's get started. +

+ Build: {BUILD_VERSION} +

+ + } + /> +); + +// Plugin catalog component +const PluginCatalogComponent: React.FC = () => ( + + ChRIS is a platform that runs Plugins. A plugin is a single + application (similar to apps on a mobile device). Examples of + ChRIS Plugins are applications that analyze images (like{" "} + pl-fshack that runs a + neuro image analysis program called{" "} + FreeSurfer). Other{" "} + Plugins perform operations like zipping files, converting medical + images from DICOM to jpg, etc. On this page you can browse{" "} + Plugins available for you to use. For more options, consult the{" "} + ChRIS store. + + } + /> +); + +// Compute catalog component +const ComputeCatalogComponent: React.FC = () => ( + + This page presents the available Compute environments that are + known to ChRIS. These denote computers and clusters/clouds that can be + selected to run various plugins and pipelines. The special{" "} + host environment is always available and is the actual server + that is running ChRIS. It is generally not recommended to run intensive + computation on the host environment. Adding new Compute to + ChRIS is typically enabled by using the separate ChRIS admin interface. + + } + /> +); + +// Pipeline catalog component +const PipelineCatalogComponent: React.FC = () => ( + + Pipelines + +); + +// Store catalog component +const StoreCatalogComponent: React.FC = () => ( + +); + +// Configuration for path mappings +const pathToComponentMap: Record = { + "/feeds": FeedsNameComponent, + "/": OverviewNameComponent, + "/catalog": PluginCatalogComponent, + "/compute": ComputeCatalogComponent, + "/pipelines": PipelineCatalogComponent, + "/store": StoreCatalogComponent, +}; + +// Feeds detail component +const FeedsDetailComponent: React.FC<{ id?: string }> = ({ id }) => { const query = useSearchQueryParams(); const type = query.get("type"); const isLoggedIn = useTypedSelector((state) => state.user.isLoggedIn); @@ -47,22 +151,32 @@ const FeedsDetailComponent = ({ id }: { id?: string }) => { return ( <CodeBranchIcon style={{ marginRight: "0.25em" }} /> - {feed?.data.name} + <Tooltip content={feed?.data.name}> + <span>{elipses(feed?.data.name, 40)}</span> + </Tooltip> ); }; -const TitleComponent = () => { +// Title component to dynamically map location to the appropriate component +const TitleComponent: React.FC = () => { const location = useLocation(); - const match = matchPath("/feeds/:id", location.pathname); + // Check if the current location matches specific paths + const feedMatch = matchPath("/feeds/:id", location.pathname); + const libraryMatch = matchPath("/library/*", location.pathname); - if (match) { - const { id } = match.params; + if (feedMatch) { + const { id } = feedMatch.params; return ; } - return location.pathname === "/feeds" ? : null; + if (libraryMatch) { + return ; + } + + const Component = pathToComponentMap[location.pathname]; + return Component ? : null; }; export default TitleComponent; From e13bd0eed69881da4a5e9ad969d0ff2e068d9df0 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 28 Aug 2024 15:02:34 -0400 Subject: [PATCH 143/337] refactors: Miscellanous improvements --- src/components/Feeds/FeedListView.tsx | 7 ++++++- src/components/NewLibrary/components/Operations.tsx | 5 ++++- src/components/Wrapper/TitleComponent.tsx | 4 ++++ 3 files changed, 14 insertions(+), 2 deletions(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 632465498..4ac3d1792 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -174,7 +174,12 @@ const TableSelectable: React.FC = () => { type: OperationContext.FEEDS, additionalKeys: [perPage, page, type, search, searchType], }} - customStyle={{ toolbarItem: { paddingInlineStart: "0" } }} + customStyle={{ + toolbarItem: { paddingInlineStart: "0" }, + toolbar: { + paddingTop: "0", + }, + }} /> {loadingFeedState ? ( diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 8ad8246a3..3144eaafc 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -275,7 +275,10 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { hidden onChange={handleFolderChange} /> - + {toolbarItems} {location.pathname.startsWith("/library/") && ( diff --git a/src/components/Wrapper/TitleComponent.tsx b/src/components/Wrapper/TitleComponent.tsx index 548585f0a..6278e3cbc 100644 --- a/src/components/Wrapper/TitleComponent.tsx +++ b/src/components/Wrapper/TitleComponent.tsx @@ -148,6 +148,10 @@ const FeedsDetailComponent: React.FC<{ id?: string }> = ({ id }) => { const { feed } = useFetchFeed(id, type, isLoggedIn); + if (!feed) { + return null; + } + return ( <CodeBranchIcon style={{ marginRight: "0.25em" }} /> From 0c1304ae651ebd61c71f0dd2b51f2f8e34a531fc Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 28 Aug 2024 15:25:04 -0400 Subject: [PATCH 144/337] feat: List view as the default in the Library Table --- src/components/NewLibrary/components/LibraryTable.tsx | 10 +++++++--- src/components/NewLibrary/components/Operations.css | 7 ++++++- src/store/cart/cartSlice.ts | 2 +- 3 files changed, 14 insertions(+), 5 deletions(-) diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 3037db207..540a2ebf3 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -40,8 +40,8 @@ interface TableProps { const columnNames = { name: "Name", - date: "Date", - owner: "Owner", + date: "Created", + owner: "Creator", size: "Size", }; @@ -168,7 +168,11 @@ const LibraryTable: React.FunctionComponent<TableProps> = ( <FileDetailView selectedFile={selectedFile} preview="large" /> )} </Drawer> - <Table aria-label="Simple table"> + <Table + className="library-table" + variant="compact" + aria-label="Simple table" + > <Caption>Data Library</Caption> <Thead> <Tr> diff --git a/src/components/NewLibrary/components/Operations.css b/src/components/NewLibrary/components/Operations.css index 38ac06190..b4498edba 100644 --- a/src/components/NewLibrary/components/Operations.css +++ b/src/components/NewLibrary/components/Operations.css @@ -1,3 +1,8 @@ .remove-toolbar-padding { padding-top: 0 !important; -} \ No newline at end of file +} + +.library-table.pf-v5-c-table.pf-m-compact tr:where(.pf-v5-c-table__tr):not(.pf-v5-c-table__expandable-row) { + --pf-v5-c-table--cell--PaddingTop: 0.75em; + --pf-v5-c-table--cell--PaddingBottom: 0.75em; + } \ No newline at end of file diff --git a/src/store/cart/cartSlice.ts b/src/store/cart/cartSlice.ts index 16af3aa41..cc696729f 100644 --- a/src/store/cart/cartSlice.ts +++ b/src/store/cart/cartSlice.ts @@ -9,7 +9,7 @@ import type { import { DownloadTypes } from "./types"; const initialState: ICartState = { - currentLayout: "grid", + currentLayout: "list", selectedPaths: [], openCart: false, folderDownloadStatus: {}, From 607e77aa43e3a1f99c660734dd0c1fb9c646f7ae Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 28 Aug 2024 15:47:28 -0400 Subject: [PATCH 145/337] refactor: Fix regression --- src/components/Feeds/FeedListView.tsx | 11 ++--------- 1 file changed, 2 insertions(+), 9 deletions(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 4ac3d1792..5e42812b6 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -117,11 +117,7 @@ const TableSelectable: React.FC = () => { return ( <WrapperConnect> - <PageSection - style={{ paddingTop: "0.25em" }} - variant="dark" - className="feed-header" - > + <PageSection style={{ paddingTop: "0.25em" }} className="feed-header"> <div> <FeedSearch loading={loadingFeedState} @@ -165,10 +161,7 @@ const TableSelectable: React.FC = () => { </CreateFeedProvider> </div> </PageSection> - <PageSection - variant="dark" - style={{ paddingBlockStart: "0.5em", height: "100%" }} - > + <PageSection style={{ paddingBlockStart: "0.5em", height: "100%" }}> <Operations origin={{ type: OperationContext.FEEDS, From f70bc7b77aea7656c79388a9d683d8c277449148 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 28 Aug 2024 16:00:57 -0400 Subject: [PATCH 146/337] feat: Fix the title of the pages in light mode --- src/components/Common/index.tsx | 6 +++++- src/components/Wrapper/TitleComponent.tsx | 16 +++++++++++++--- 2 files changed, 18 insertions(+), 4 deletions(-) diff --git a/src/components/Common/index.tsx b/src/components/Common/index.tsx index 3e2f86c0a..d2346b39e 100644 --- a/src/components/Common/index.tsx +++ b/src/components/Common/index.tsx @@ -148,12 +148,16 @@ export const InfoIcon = ({ p2, p3, p4, + customStyle, }: { title: string; p1?: any; p2?: any; p3?: any; p4?: any; + customStyle?: { + [key: string]: React.CSSProperties; + }; }) => { const content = ( <Hint> @@ -166,7 +170,7 @@ export const InfoIcon = ({ return ( <div style={{ display: "flex" }}> - <Title level={4} style={{ marginBottom: 0 }}> + <Title level={4} style={{ ...customStyle?.title, marginBottom: 0 }}> {title} diff --git a/src/components/Wrapper/TitleComponent.tsx b/src/components/Wrapper/TitleComponent.tsx index 6278e3cbc..474a24d85 100644 --- a/src/components/Wrapper/TitleComponent.tsx +++ b/src/components/Wrapper/TitleComponent.tsx @@ -18,7 +18,17 @@ const { Paragraph, Title } = Typography; const InfoSection: React.FC<{ title: string; content: React.ReactNode }> = ({ title, content, -}) => {content}} />; +}) => ( + {content}} + /> +); // Feeds name component const FeedsNameComponent: React.FC = () => { @@ -117,7 +127,7 @@ const ComputeCatalogComponent: React.FC = () => ( // Pipeline catalog component const PipelineCatalogComponent: React.FC = () => ( - + <Title level={4} style={{ marginBottom: 0, color: "white" }}> Pipelines ); @@ -153,7 +163,7 @@ const FeedsDetailComponent: React.FC<{ id?: string }> = ({ id }) => { } return ( - + <Title level={4} style={{ marginBottom: 0, color: "white" }}> <CodeBranchIcon style={{ marginRight: "0.25em" }} /> <Tooltip content={feed?.data.name}> <span>{elipses(feed?.data.name, 40)}</span> From 812c345bae1cf5262770aad7765a0173750de443 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 28 Aug 2024 17:44:33 -0400 Subject: [PATCH 147/337] feat: Update the library page to show highlights to newly created resources --- .../NewLibrary/components/FileCard.tsx | 49 ++- .../NewLibrary/components/FolderCard.tsx | 31 +- .../NewLibrary/components/LibraryTable.tsx | 306 ++++++++++-------- src/components/NewLibrary/index.tsx | 6 +- 4 files changed, 245 insertions(+), 147 deletions(-) diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index b6fca2325..ef836af55 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -14,7 +14,7 @@ import { SplitItem, Tooltip, } from "@patternfly/react-core"; -import { format } from "date-fns"; +import { differenceInSeconds, format } from "date-fns"; import { isEmpty } from "lodash"; import type React from "react"; import { useContext, useEffect, useState } from "react"; @@ -192,14 +192,46 @@ export const SubFileCard: React.FC<SubFileCardProps> = ({ const { handlers } = useLongPress(); const [api, contextHolder] = notification.useNotification(); const [preview, setIsPreview] = useState(false); + const [isNewFile, setIsNewFile] = useState<boolean>(false); + const creationDate = file.data.creation_date; + const secondsSinceCreation = differenceInSeconds(new Date(), creationDate); + const [isNewFolder, setIsNewFolder] = useState<boolean>( + secondsSinceCreation <= 15, + ); const fileName = getFileName(file); const isSelected = selectedPaths.some( (payload) => payload.path === file.data.fname, ); - const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); + const shouldHighlight = isNewFolder || isSelected; + const selectedBgRow = getBackgroundRowColor(shouldHighlight, isDarkTheme); const ext = getFileExtension(file.data.fname); const icon = getIcon(ext, isDarkTheme); + useEffect(() => { + if (isNewFolder) { + const timeoutId = setTimeout(() => { + setIsNewFolder(false); + }, 2000); // 60 seconds + + // Cleanup the timeout if the component unmounts before the timeout completes + return () => clearTimeout(timeoutId); + } + }, [isNewFolder]); + + useEffect(() => { + const creationDate = new Date(file.data.creation_date); + const secondsSinceCreation = differenceInSeconds(new Date(), creationDate); + + if (secondsSinceCreation <= 15) { + setIsNewFile(true); + const timeoutId = setTimeout(() => { + setIsNewFile(false); + }, 2000); // 2 seconds + + return () => clearTimeout(timeoutId); + } + }, [file.data.creation_date]); + useEffect(() => { if (handleDownloadMutation.isSuccess) { api.success({ @@ -248,7 +280,9 @@ export const SubFileCard: React.FC<SubFileCardProps> = ({ name={fileName} date={file.data.creation_date} icon={icon} - bgRow={selectedBgRow} + bgRow={ + isNewFile ? getBackgroundRowColor(true, isDarkTheme) : selectedBgRow + } /> <Modal className="library-preview" @@ -289,6 +323,15 @@ export const SubLinkCard: React.FC<SubLinkCardProps> = ({ (payload) => payload.path === linkFile.data.path, ); const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); + + // Calculate if the link file is new + const creationDate = new Date(linkFile.data.creation_date); + const now = new Date(); + const secondsSinceCreation = Math.floor( + (now.getTime() - creationDate.getTime()) / 1000, + ); + const isNewLinkFile = secondsSinceCreation <= 2; // 2 seconds + const icon = <ExternalLinkSquareAltIcon />; useEffect(() => { diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index 9615bb120..a070a3c11 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -9,9 +9,9 @@ import { SplitItem, } from "@patternfly/react-core"; import { useQuery } from "@tanstack/react-query"; -import { format } from "date-fns"; +import { differenceInSeconds, format } from "date-fns"; import { isEmpty } from "lodash"; -import { useContext } from "react"; +import { useContext, useEffect, useState } from "react"; import { Fragment } from "react/jsx-runtime"; import ChrisAPIClient from "../../../api/chrisapiclient"; import { elipses } from "../../../api/common"; @@ -75,15 +75,29 @@ export const SubFolderCard: React.FC<SubFolderCardProps> = (props) => { const folderName = getFolderName(folder, computedPath); const creationDate = folder.data.creation_date; + const secondsSinceCreation = differenceInSeconds(new Date(), creationDate); + + const [isNewFolder, setIsNewFolder] = useState<boolean>( + secondsSinceCreation <= 15, + ); + + useEffect(() => { + if (isNewFolder) { + const timeoutId = setTimeout(() => { + setIsNewFolder(false); + }, 2000); // 60 seconds + + // Cleanup the timeout if the component unmounts before the timeout completes + return () => clearTimeout(timeoutId); + } + }, [isNewFolder]); const isSelected = selectedPaths.some( (payload) => payload.path === folder.data.path, ); - const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); - // When users create an analysis, they have a specific name in mind. Showing the user the underlying - // folder path (e.g., feed_98) can be confusing if the analysis is titled 'Freesurfer Analysis'. - // Therefore, we perform an additional fetch to display the feed folders with their title names. + const shouldHighlight = isNewFolder || isSelected; + const highlightedBgRow = getBackgroundRowColor(shouldHighlight, isDarkTheme); const feedMatches = folderName.match(/feed_(\d+)/); const { data, isLoading } = useQuery({ @@ -111,7 +125,10 @@ export const SubFolderCard: React.FC<SubFolderCardProps> = (props) => { }} > <Card - style={{ background: selectedBgRow, cursor: "pointer" }} + style={{ + background: highlightedBgRow, + cursor: "pointer", + }} isSelected={isSelected} isClickable isSelectable diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 540a2ebf3..418d41047 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -1,8 +1,6 @@ -import type { - FileBrowserFolder, - FileBrowserFolderFile, - FileBrowserFolderLinkFile, -} from "@fnndsc/chrisapi"; +import React, { useContext, useState, useEffect } from "react"; +import { useNavigate } from "react-router"; +import { useTypedSelector } from "../../../store/hooks"; import { Button } from "@patternfly/react-core"; import { Caption, @@ -14,10 +12,12 @@ import { Tr, } from "@patternfly/react-table"; import { Drawer } from "antd"; -import { format } from "date-fns"; -import React, { useContext, useState } from "react"; -import { useNavigate } from "react-router"; -import { useTypedSelector } from "../../../store/hooks"; +import { differenceInSeconds, format } from "date-fns"; +import type { + FileBrowserFolder, + FileBrowserFolderFile, + FileBrowserFolderLinkFile, +} from "@fnndsc/chrisapi"; import { getIcon } from "../../Common"; import { ThemeContext } from "../../DarkTheme/useTheme"; import { formatBytes } from "../../Feeds/utilties"; @@ -45,111 +45,146 @@ const columnNames = { size: "Size", }; -const LibraryTable: React.FunctionComponent<TableProps> = ( - props: TableProps, -) => { +interface RowProps { + resource: + | FileBrowserFolder + | FileBrowserFolderFile + | FileBrowserFolderLinkFile; + name: string; + date: string; + owner: string; + size: number; + type: "folder" | "file" | "link"; + computedPath: string; + handleFolderClick: (folderName: string) => void; + handleFileClick: (file: FileBrowserFolderFile) => void; +} + +const BaseRow: React.FC<RowProps> = ({ + resource, + name, + date, + owner, + size, + type, + computedPath, + handleFolderClick, + handleFileClick, +}) => { const navigate = useNavigate(); const { handlers } = useLongPress(); const { handleOnClick } = handlers; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const isDarkTheme = useContext(ThemeContext).isDarkTheme; - const { data, computedPath, handleFolderClick } = props; - const [preview, setShowPreview] = useState(false); - const [selectedFile, setSelectedFile] = useState<FileBrowserFolderFile>(); + const secondsSinceCreation = differenceInSeconds(new Date(), date); + const [isNewResource, setIsNewResource] = useState<boolean>( + secondsSinceCreation <= 15, + ); - const renderRow = ( - resource: - | FileBrowserFolder - | FileBrowserFolderFile - | FileBrowserFolderLinkFile, - name: string, - date: string, - owner: string, - size: number, - type: string, - ) => { - const isSelected = - selectedPaths.length > 0 && - selectedPaths.some((payload) => { - if (type === "folder" || type === "link") { - return payload.path === resource.data.path; - } - - if (type === "file") { - return payload.path === resource.data.fname; - } - }); - const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); - const icon = getIcon(type, isDarkTheme, { - marginRight: "0.25em", - }); + useEffect(() => { + if (isNewResource) { + const timeoutId = setTimeout(() => { + setIsNewResource(false); + }, 2000); - const handleItem = ( - item: - | FileBrowserFolderFile - | FileBrowserFolder - | FileBrowserFolderLinkFile, - type: string, - ) => { - if (type === "folder") { - handleFolderClick(name); - } + return () => clearTimeout(timeoutId); + } + }, [isNewResource]); - if (type === "link") { - navigate(item.data.path); + const isSelected = + selectedPaths.length > 0 && + selectedPaths.some((payload) => { + if (type === "folder" || type === "link") { + return payload.path === resource.data.path; } - if (type === "file") { - // Show preview - setSelectedFile(resource as FileBrowserFolderFile); - setShowPreview(true); + return payload.path === resource.data.fname; } - }; + }); - const path = type === "file" ? resource.data.fname : resource.data.path; + const shouldHighlight = isNewResource || isSelected; + const highlightedBgRow = getBackgroundRowColor(shouldHighlight, isDarkTheme); + const icon = getIcon(type, isDarkTheme, { + marginRight: "0.25em", + }); - return ( - <FolderContextMenu - origin={{ - type: OperationContext.LIBRARY, - additionalKeys: [computedPath], + const handleItem = () => { + if (type === "folder") { + handleFolderClick(name); + } else if (type === "link") { + navigate(resource.data.path); + } else if (type === "file") { + handleFileClick(resource as FileBrowserFolderFile); + } + }; + + const path = type === "file" ? resource.data.fname : resource.data.path; + + return ( + <FolderContextMenu + origin={{ + type: OperationContext.LIBRARY, + additionalKeys: [computedPath], + }} + key={path} + > + <Tr + style={{ background: highlightedBgRow }} + onClick={(e) => { + handleOnClick(e, resource, path, type); + }} + onContextMenu={(e) => { + handleOnClick(e, resource, path, type); }} - key={path} > - <Tr - style={{ background: selectedBgRow }} - onClick={(e) => { - handleOnClick(e, resource, path, type); - }} - onContextMenu={(e) => { - handleOnClick(e, resource, path, type); - }} - key={name} - > - <Td dataLabel={columnNames.name}> - <Button - onClick={(e) => { - e.stopPropagation(); - handleItem(resource, type); - }} - style={{ padding: 0 }} - icon={icon} - variant="link" - > - {name} - </Button> - </Td> - <Td dataLabel={columnNames.date}> - {" "} - {format(new Date(date), "dd MMM yyyy, HH:mm")} - </Td> - <Td dataLabel={columnNames.owner}>{owner}</Td> - <Td dataLabel={columnNames.size}> - {size > 0 ? formatBytes(size, 0) : " "} - </Td> - </Tr> - </FolderContextMenu> - ); + <Td dataLabel={columnNames.name}> + <Button + onClick={(e) => { + e.stopPropagation(); + handleItem(); + }} + style={{ padding: 0 }} + icon={icon} + variant="link" + > + {name} + </Button> + </Td> + <Td dataLabel={columnNames.date}> + {format(new Date(date), "dd MMM yyyy, HH:mm")} + </Td> + <Td dataLabel={columnNames.owner}>{owner}</Td> + <Td dataLabel={columnNames.size}> + {size > 0 ? formatBytes(size, 0) : " "} + </Td> + </Tr> + </FolderContextMenu> + ); +}; + +const FolderRow: React.FC<Omit<RowProps, "type">> = (props) => ( + <BaseRow {...props} type="folder" /> +); + +const FileRow: React.FC<Omit<RowProps, "type">> = (props) => ( + <BaseRow {...props} type="file" /> +); + +const LinkRow: React.FC<Omit<RowProps, "type">> = (props) => ( + <BaseRow {...props} type="link" /> +); + +const LibraryTable: React.FC<TableProps> = ({ + data, + computedPath, + handleFolderClick, +}) => { + const [preview, setShowPreview] = useState(false); + const [selectedFile, setSelectedFile] = useState<FileBrowserFolderFile>(); + + const handleFileClick = (file: FileBrowserFolderFile) => { + setSelectedFile(file); + setShowPreview(true); }; return ( @@ -183,40 +218,45 @@ const LibraryTable: React.FunctionComponent<TableProps> = ( </Tr> </Thead> <Tbody> - {data.folders.map((resource: FileBrowserFolder) => { - const folderName = getFolderName(resource, computedPath); - return renderRow( - resource, - folderName, - resource.data.creation_date, - " ", - // Size of the folder is not available yet - 0, - "folder", - ); - })} - {data.files.map((resource: FileBrowserFolderFile) => { - const fileName = getFileName(resource); - return renderRow( - resource, - fileName, - resource.data.creation_date, - resource.data.owner_username, - resource.data.fsize, - "file", - ); - })} - {data.linkFiles.map((resource: FileBrowserFolderLinkFile) => { - const fileName = getLinkFileName(resource); - return renderRow( - resource, - fileName, - resource.data.creation_date, - resource.data.owner_username, - resource.data.fsize, - "link", - ); - })} + {data.folders.map((resource: FileBrowserFolder) => ( + <FolderRow + key={resource.data.path} + resource={resource} + name={getFolderName(resource, computedPath)} + date={resource.data.creation_date} + owner=" " + size={0} + computedPath={computedPath} + handleFolderClick={handleFolderClick} + handleFileClick={handleFileClick} + /> + ))} + {data.files.map((resource: FileBrowserFolderFile) => ( + <FileRow + key={resource.data.fname} + resource={resource} + name={getFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={computedPath} + handleFolderClick={handleFolderClick} + handleFileClick={handleFileClick} + /> + ))} + {data.linkFiles.map((resource: FileBrowserFolderLinkFile) => ( + <LinkRow + key={resource.data.path} + resource={resource} + name={getLinkFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={computedPath} + handleFolderClick={handleFolderClick} + handleFileClick={handleFileClick} + /> + ))} </Tbody> </Table> </React.Fragment> diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index 9e4895593..8c328779b 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -10,8 +10,8 @@ import { useEffect, useRef, useState } from "react"; import { useLocation, useNavigate } from "react-router"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useTypedSelector } from "../../store/hooks"; -import { Alert, Typography } from "../Antd"; -import { EmptyStateComponent, InfoIcon, SpinContainer } from "../Common"; +import { Alert } from "../Antd"; +import { EmptyStateComponent, SpinContainer } from "../Common"; import WrapperConnect from "../Wrapper"; import BreadcrumbContainer from "./components/BreadcrumbContainer"; import { FilesCard, LinkCard } from "./components/FileCard"; @@ -20,8 +20,6 @@ import LibraryTable from "./components/LibraryTable"; import Operations from "./components/Operations"; import { OperationContext } from "./context"; -const { Paragraph } = Typography; - const NewLibrary = () => { // Fetch folders from the server async function fetchFolders(computedPath: string, pageNumber: number) { From c37b228ee5a909192acb23ce28bb314136a336be Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 09:31:50 -0400 Subject: [PATCH 148/337] Add a tag to newly created resources in the library --- src/app.css | 2 +- .../NewLibrary/components/LibraryTable.tsx | 37 +++++++++++++------ .../NewLibrary/components/Operations.css | 4 +- src/components/Wrapper/Toolbar.tsx | 4 +- 4 files changed, 30 insertions(+), 17 deletions(-) diff --git a/src/app.css b/src/app.css index 825e3930a..c4e62affd 100644 --- a/src/app.css +++ b/src/app.css @@ -43,7 +43,7 @@ } .pf-v5-c-page__main-section { - padding-block-start: 0.5em; + padding-block-start: 0; } .pf-v5-c-page__sidebar { diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 418d41047..dcdb44e83 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -1,6 +1,8 @@ -import React, { useContext, useState, useEffect } from "react"; -import { useNavigate } from "react-router"; -import { useTypedSelector } from "../../../store/hooks"; +import type { + FileBrowserFolder, + FileBrowserFolderFile, + FileBrowserFolderLinkFile, +} from "@fnndsc/chrisapi"; import { Button } from "@patternfly/react-core"; import { Caption, @@ -11,13 +13,11 @@ import { Thead, Tr, } from "@patternfly/react-table"; -import { Drawer } from "antd"; +import { Drawer, Tag } from "antd"; import { differenceInSeconds, format } from "date-fns"; -import type { - FileBrowserFolder, - FileBrowserFolderFile, - FileBrowserFolderLinkFile, -} from "@fnndsc/chrisapi"; +import React, { useContext, useState, useEffect, useRef } from "react"; +import { useNavigate } from "react-router"; +import { useTypedSelector } from "../../../store/hooks"; import { getIcon } from "../../Common"; import { ThemeContext } from "../../DarkTheme/useTheme"; import { formatBytes } from "../../Feeds/utilties"; @@ -76,16 +76,23 @@ const BaseRow: React.FC<RowProps> = ({ const { handleOnClick } = handlers; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const isDarkTheme = useContext(ThemeContext).isDarkTheme; - const secondsSinceCreation = differenceInSeconds(new Date(), date); + const rowRef = useRef<HTMLTableRowElement>(null); // Create a ref for the row + + const secondsSinceCreation = differenceInSeconds(new Date(), new Date(date)); const [isNewResource, setIsNewResource] = useState<boolean>( secondsSinceCreation <= 15, ); useEffect(() => { - if (isNewResource) { + if (isNewResource && rowRef.current) { + rowRef.current.scrollIntoView({ + behavior: "smooth", + block: "center", + }); + const timeoutId = setTimeout(() => { setIsNewResource(false); - }, 2000); + }, 10000); return () => clearTimeout(timeoutId); } @@ -129,6 +136,7 @@ const BaseRow: React.FC<RowProps> = ({ key={path} > <Tr + ref={rowRef} // Attach the ref to the row style={{ background: highlightedBgRow }} onClick={(e) => { handleOnClick(e, resource, path, type); @@ -149,6 +157,11 @@ const BaseRow: React.FC<RowProps> = ({ > {name} </Button> + {isNewResource && ( + <Tag style={{ marginLeft: "0.25em" }} color="#3E8635"> + Recently Added + </Tag> + )} </Td> <Td dataLabel={columnNames.date}> {format(new Date(date), "dd MMM yyyy, HH:mm")} diff --git a/src/components/NewLibrary/components/Operations.css b/src/components/NewLibrary/components/Operations.css index b4498edba..773a7ba56 100644 --- a/src/components/NewLibrary/components/Operations.css +++ b/src/components/NewLibrary/components/Operations.css @@ -3,6 +3,6 @@ } .library-table.pf-v5-c-table.pf-m-compact tr:where(.pf-v5-c-table__tr):not(.pf-v5-c-table__expandable-row) { - --pf-v5-c-table--cell--PaddingTop: 0.75em; - --pf-v5-c-table--cell--PaddingBottom: 0.75em; + --pf-v5-c-table--cell--PaddingTop: 1em; + --pf-v5-c-table--cell--PaddingBottom: 1em; } \ No newline at end of file diff --git a/src/components/Wrapper/Toolbar.tsx b/src/components/Wrapper/Toolbar.tsx index 28feae7f2..e1255c86a 100644 --- a/src/components/Wrapper/Toolbar.tsx +++ b/src/components/Wrapper/Toolbar.tsx @@ -135,7 +135,7 @@ const ToolbarComponent: React.FC<ToolbarComponentProps> = ( ) : ( <> <Button - style={{ padding: "0" }} + style={{ padding: "0.25em" }} variant="link" onClick={() => { navigate( @@ -146,7 +146,7 @@ const ToolbarComponent: React.FC<ToolbarComponentProps> = ( Login </Button> <Button - style={{ padding: "0" }} + style={{ padding: "0.25em" }} variant="link" onClick={() => navigate("/signup")} > From 65eb2b03897ffcce585aa8aadd11c73a6277031d Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 11:19:17 -0400 Subject: [PATCH 149/337] feat: Rewworking file and folder selections with checkboxes --- src/components/Feeds/FeedListView.tsx | 15 ++++- src/components/Feeds/useFeedListData.tsx | 2 +- .../NewLibrary/components/FileCard.tsx | 28 ++++++---- .../NewLibrary/components/FolderCard.tsx | 12 +++- .../NewLibrary/components/LibraryTable.tsx | 56 ++++++++++++++----- src/components/NewLibrary/utils/longpress.tsx | 44 ++++++++++----- .../Preview/displays/DcmDisplay.tsx | 3 +- 7 files changed, 113 insertions(+), 47 deletions(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 5e42812b6..6fe615fb6 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -238,7 +238,7 @@ const TableRow: React.FC<TableRowProps> = ({ }) => { const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); - const { handleOnClick } = handlers; + const { handleOnClick, isMenuOpen } = handlers; const navigate = useNavigate(); const [intervalMs, setIntervalMs] = useState(2000); const { isDarkTheme } = useContext(ThemeContext); @@ -298,6 +298,7 @@ const TableRow: React.FC<TableRowProps> = ({ key={feed.data.id} style={{ backgroundColor: selectedBgRow, + cursor: "pointer", }} data-test-id={`${feed.data.name}-test`} onContextMenu={async (e) => { @@ -305,8 +306,13 @@ const TableRow: React.FC<TableRowProps> = ({ handleOnClick(e, payload, feed.data.folder_path, "folder"); }} onClick={async (e) => { - const payload = await getFolderForThisFeed(); - handleOnClick(e, payload, feed.data.folder_path, "folder"); + e.stopPropagation(); + if (e.ctrlKey || isMenuOpen) { + const payload = await getFolderForThisFeed(); + handleOnClick(e, payload, feed.data.folder_path, "folder"); + } else { + onFeedNameClick(); + } }} > <Td> @@ -441,6 +447,9 @@ const FeedInfoColumn = ({ e.stopPropagation(); onClick(feed); }} + style={{ + padding: 0, + }} > {feed.data.name} </Button> diff --git a/src/components/Feeds/useFeedListData.tsx b/src/components/Feeds/useFeedListData.tsx index 8c0383cbc..1ce002acf 100644 --- a/src/components/Feeds/useFeedListData.tsx +++ b/src/components/Feeds/useFeedListData.tsx @@ -13,7 +13,7 @@ const useSearchQuery = (query: URLSearchParams) => ({ page: query.get("page") || "1", search: query.get("search") || "", searchType: query.get("searchType") || "name", - perPage: query.get("perPage") || "18", + perPage: query.get("perPage") || "20", type: query.get("type") || "public", }); diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index ef836af55..69143a2f3 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -254,8 +254,14 @@ export const SubFileCard: React.FC<SubFileCardProps> = ({ handleDownloadMutation, ]); - const handleClick = (e: React.MouseEvent<HTMLElement, MouseEvent>) => - handlers.handleOnClick(e, file, file.data.fname, "file"); + const handleClick = (e: React.MouseEvent<HTMLElement, MouseEvent>) => { + e.stopPropagation(); + if (e.ctrlKey || handlers.isMenuOpen) { + handlers.handleOnClick(e, file, file.data.fname, "file"); + } else { + setIsPreview(!preview); + } + }; const handleCheckboxChange = (e: React.FormEvent<HTMLInputElement>) => { e.stopPropagation(); @@ -324,14 +330,6 @@ export const SubLinkCard: React.FC<SubLinkCardProps> = ({ ); const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); - // Calculate if the link file is new - const creationDate = new Date(linkFile.data.creation_date); - const now = new Date(); - const secondsSinceCreation = Math.floor( - (now.getTime() - creationDate.getTime()) / 1000, - ); - const isNewLinkFile = secondsSinceCreation <= 2; // 2 seconds - const icon = <ExternalLinkSquareAltIcon />; useEffect(() => { @@ -356,8 +354,14 @@ export const SubLinkCard: React.FC<SubLinkCardProps> = ({ handleDownloadMutation, ]); - const handleClick = (e: React.MouseEvent<HTMLElement, MouseEvent>) => - handlers.handleOnClick(e, linkFile, linkFile.data.path, "linkFile"); + const handleClick = (e: React.MouseEvent<HTMLElement, MouseEvent>) => { + e.stopPropagation(); + if (e.ctrlKey || handlers.isMenuOpen) { + handlers.handleOnClick(e, linkFile, linkFile.data.path, "linkFile"); + } else { + navigate(linkFile.data.path); + } + }; const handleCheckboxChange = (e: React.FormEvent<HTMLInputElement>) => { e.stopPropagation(); diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index a070a3c11..8f0c2b033 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -71,7 +71,8 @@ export const SubFolderCard: React.FC<SubFolderCardProps> = (props) => { const isDarkTheme = useContext(ThemeContext).isDarkTheme; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); - const { handleOnClick, handleOnMouseDown, handleCheckboxChange } = handlers; + const { handleOnClick, handleOnMouseDown, handleCheckboxChange, isMenuOpen } = + handlers; const folderName = getFolderName(folder, computedPath); const creationDate = folder.data.creation_date; @@ -134,7 +135,14 @@ export const SubFolderCard: React.FC<SubFolderCardProps> = (props) => { isSelectable isCompact isFlat - onClick={(e) => handleOnClick(e, folder, folder.data.path, "folder")} + onClick={(e) => { + e.stopPropagation(); + if (e.ctrlKey || isMenuOpen) { + handleOnClick(e, folder, folder.data.path, "folder"); + } else { + handleFolderClick(folderName); + } + }} onContextMenu={(e) => handleOnClick(e, folder, folder.data.path, "folder") } diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index dcdb44e83..be4c8d5e9 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -3,7 +3,7 @@ import type { FileBrowserFolderFile, FileBrowserFolderLinkFile, } from "@fnndsc/chrisapi"; -import { Button } from "@patternfly/react-core"; +import { Button, Checkbox } from "@patternfly/react-core"; import { Caption, Table, @@ -15,7 +15,7 @@ import { } from "@patternfly/react-table"; import { Drawer, Tag } from "antd"; import { differenceInSeconds, format } from "date-fns"; -import React, { useContext, useState, useEffect, useRef } from "react"; +import React, { useContext, useEffect, useRef, useState } from "react"; import { useNavigate } from "react-router"; import { useTypedSelector } from "../../../store/hooks"; import { getIcon } from "../../Common"; @@ -73,7 +73,7 @@ const BaseRow: React.FC<RowProps> = ({ }) => { const navigate = useNavigate(); const { handlers } = useLongPress(); - const { handleOnClick } = handlers; + const { handleOnClick, handleCheckboxChange, isMenuOpen } = handlers; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const isDarkTheme = useContext(ThemeContext).isDarkTheme; const rowRef = useRef<HTMLTableRowElement>(null); // Create a ref for the row @@ -112,7 +112,7 @@ const BaseRow: React.FC<RowProps> = ({ const shouldHighlight = isNewResource || isSelected; const highlightedBgRow = getBackgroundRowColor(shouldHighlight, isDarkTheme); const icon = getIcon(type, isDarkTheme, { - marginRight: "0.25em", + marginRight: "0.5em", }); const handleItem = () => { @@ -125,7 +125,10 @@ const BaseRow: React.FC<RowProps> = ({ } }; - const path = type === "file" ? resource.data.fname : resource.data.path; + const path = + type === "file" || type === "link" + ? resource.data.fname + : resource.data.path; return ( <FolderContextMenu @@ -137,21 +140,47 @@ const BaseRow: React.FC<RowProps> = ({ > <Tr ref={rowRef} // Attach the ref to the row - style={{ background: highlightedBgRow }} + style={{ background: highlightedBgRow, cursor: "pointer" }} onClick={(e) => { - handleOnClick(e, resource, path, type); + e.stopPropagation(); + if (e.ctrlKey || isMenuOpen) { + handleOnClick(e, resource, path, type); + } else { + handleItem(); + } }} onContextMenu={(e) => { handleOnClick(e, resource, path, type); }} > - <Td dataLabel={columnNames.name}> + <Td + style={{ + paddingInlineEnd: 0, + }} + > + <Checkbox + name={name} + isChecked={isSelected} + id="Select Resources" + aria-label="Select resources" + onClick={(e) => e.stopPropagation()} + onChange={(event) => { + handleCheckboxChange(event, path, resource, type); + }} + /> + </Td> + <Td + style={{ + paddingInlineStart: 0, + }} + dataLabel={columnNames.name} + > <Button onClick={(e) => { e.stopPropagation(); handleItem(); }} - style={{ padding: 0 }} + style={{ padding: "0.25em" }} icon={icon} variant="link" > @@ -224,10 +253,11 @@ const LibraryTable: React.FC<TableProps> = ({ <Caption>Data Library</Caption> <Thead> <Tr> - <Th>{columnNames.name}</Th> - <Th>{columnNames.date}</Th> - <Th>{columnNames.owner}</Th> - <Th>{columnNames.size}</Th> + <Th arial-label="Select a row" /> + <Th name="name">{columnNames.name}</Th> + <Th name="date">{columnNames.date}</Th> + <Th name="owner">{columnNames.owner}</Th> + <Th name="size">{columnNames.size}</Th> </Tr> </Thead> <Tbody> diff --git a/src/components/NewLibrary/utils/longpress.tsx b/src/components/NewLibrary/utils/longpress.tsx index c94dee588..677b32645 100644 --- a/src/components/NewLibrary/utils/longpress.tsx +++ b/src/components/NewLibrary/utils/longpress.tsx @@ -24,15 +24,14 @@ export function elipses(str: string, len: number) { export default function useLongPress() { const dispatch = useDispatch(); const [action, setAction] = useState<string>(); + const [isMenuOpen, setIsMenuOpen] = useState<boolean>(false); // Track menu state const state = useTypedSelector((state) => state.cart); const timerRef = useRef<ReturnType<typeof window.setTimeout>>(); const isLongPress = useRef<boolean>(); - const { selectedPaths } = state; function startPressTimer() { isLongPress.current = false; - //@ts-ignore timerRef.current = window.setTimeout(() => { isLongPress.current = true; @@ -59,18 +58,40 @@ export default function useLongPress() { type: string, ) { const isExist = selectedPaths.some((item) => item.path === pathForCart); - if (e.type === "contextmenu") { - // Handle right-click (context menu) + + // Handle Ctrl + Click for selection + if (e.type === "click" && (e as React.MouseEvent).ctrlKey) { + e.preventDefault(); + if (!isExist) { + selectFolder(pathForCart, type, payload); + } else { + deselectFolder(pathForCart); + } + } else if (e.type === "contextmenu") { e.preventDefault(); // Prevent the default context menu from appearing + if (!isExist) { selectFolder(pathForCart, type, payload); } + + // Toggle the menu state + setIsMenuOpen((prev) => { + if (prev) { + deselectFolder(pathForCart); + } + return !prev; + }); } else { - // Handle every click on the card if (!isExist) { selectFolder(pathForCart, type, payload); } else { - deselectFolder(pathForCart); + // If menu was open, deselect and close menu on row click + if (isMenuOpen) { + deselectFolder(pathForCart); + setIsMenuOpen(false); + } else { + deselectFolder(pathForCart); + } } } } @@ -86,15 +107,9 @@ export default function useLongPress() { ) => { e.stopPropagation(); if (e.currentTarget.checked) { - dispatch( - setSelectedPaths({ - path, - type, - payload, - }), - ); + selectFolder(path, type, payload); } else { - dispatch(clearSelectedPaths(path)); + deselectFolder(path); } }; @@ -124,6 +139,7 @@ export default function useLongPress() { handleOnTouchStart, handleOnTouchEnd, handleCheckboxChange, + isMenuOpen, }, }; } diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index ca9b30767..f073a35b2 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -70,8 +70,8 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { useEffect(() => { //Global registration needs to happen once registerToolingOnce(); - return () => { + renderingEngine?.destroy(); removeTools(); cleanupCornerstoneTooling(); }; @@ -82,7 +82,6 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { if (file && blob) { let imageID: string; const extension = getFileExtension(file.data.fname); - renderingEngine?.destroy(); await basicInit(); setUpTooling(uniqueId); if (extension === "dcm") { From c2c2405ba92117a24bf71c5614aa5f68c1cc1489 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 12:10:44 -0400 Subject: [PATCH 150/337] feat: Use Helper Functions in the File Browser Table --- .../FeedOutputBrowser/FileBrowser.tsx | 82 +++++++++++++++++-- .../NewLibrary/components/LibraryTable.tsx | 7 +- 2 files changed, 77 insertions(+), 12 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 58078adfc..93bbfe6d6 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -1,6 +1,7 @@ import type { FileBrowserFolder, FileBrowserFolderFile, + FileBrowserFolderLinkFile, } from "@fnndsc/chrisapi"; import { Breadcrumb, @@ -18,6 +19,10 @@ import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; import { format } from "date-fns"; import { useContext, useEffect } from "react"; import { useDispatch } from "react-redux"; +import { + getFileName, + getLinkFileName, +} from "../NewLibrary/components/FileCard"; import { getFileExtension } from "../../api/model"; import { setFilePreviewPanel } from "../../store/drawer/drawerSlice"; import { @@ -32,6 +37,12 @@ import { DrawerActionButton } from "../Feeds/DrawerUtils"; import { handleMaximize, handleMinimize } from "../Feeds/utilties"; import { HomeIcon } from "../Icons"; import { FolderContextMenu } from "../NewLibrary/components/ContextMenu"; +import { getFolderName } from "../NewLibrary/components/FolderCard"; +import { + FolderRow, + FileRow, + LinkRow, +} from "../NewLibrary/components/LibraryTable"; import Operations from "../NewLibrary/components/Operations"; import { OperationContext } from "../NewLibrary/context"; import useLongPress, { @@ -342,17 +353,70 @@ const FileBrowser = (props: FileBrowserProps) => { <SpinContainer title="Fetching Files for this path..." /> ) : ( <Tbody> - {folderFiles.map((folderFile) => { - const component = tableRowItem(folderFile, "file"); - return component; + {folderFiles.map((resource: FileBrowserFolderFile) => { + return ( + <FileRow + key={resource.data.fname} + resource={resource} + name={getFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={path} + handleFolderClick={() => { + return; + }} + handleFileClick={() => { + toggleAnimation(); + dispatch( + setSelectedFile( + resource as FileBrowserFolderFile, + ), + ); + !drawerState.preview.open && + dispatch(setFilePreviewPanel()); + }} + /> + ); })} - {linkFiles.map((linkFile) => { - const component = tableRowItem(linkFile, "link"); - return component; + {linkFiles.map((resource: FileBrowserFolderLinkFile) => { + return ( + <LinkRow + key={resource.data.path} + resource={resource} + name={getLinkFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={path} + handleFolderClick={() => { + handleFileClick(resource.data.path); + }} + handleFileClick={() => { + return; + }} + /> + ); })} - {children.map((child) => { - const component = tableRowItem(child, "folder"); - return component; + + {children.map((resource: FileBrowserFolder) => { + return ( + <FolderRow + key={resource.data.path} + resource={resource} + name={getFolderName(resource, path)} + date={resource.data.creation_date} + owner=" " + size={0} + computedPath={path} + handleFolderClick={() => + handleFileClick(resource.data.path) + } + handleFileClick={() => { + return; + }} + /> + ); })} </Tbody> )} diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index be4c8d5e9..66d88d1cb 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -156,6 +156,7 @@ const BaseRow: React.FC<RowProps> = ({ <Td style={{ paddingInlineEnd: 0, + maxWidth: "1em", }} > <Checkbox @@ -204,15 +205,15 @@ const BaseRow: React.FC<RowProps> = ({ ); }; -const FolderRow: React.FC<Omit<RowProps, "type">> = (props) => ( +export const FolderRow: React.FC<Omit<RowProps, "type">> = (props) => ( <BaseRow {...props} type="folder" /> ); -const FileRow: React.FC<Omit<RowProps, "type">> = (props) => ( +export const FileRow: React.FC<Omit<RowProps, "type">> = (props) => ( <BaseRow {...props} type="file" /> ); -const LinkRow: React.FC<Omit<RowProps, "type">> = (props) => ( +export const LinkRow: React.FC<Omit<RowProps, "type">> = (props) => ( <BaseRow {...props} type="link" /> ); From 53dca7dd6fc06000d05301179f6f16b568695116 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 12:33:02 -0400 Subject: [PATCH 151/337] feat: minor update to the context menu interaction --- src/components/NewLibrary/utils/longpress.tsx | 16 ++++------------ 1 file changed, 4 insertions(+), 12 deletions(-) diff --git a/src/components/NewLibrary/utils/longpress.tsx b/src/components/NewLibrary/utils/longpress.tsx index 677b32645..65aa0dc07 100644 --- a/src/components/NewLibrary/utils/longpress.tsx +++ b/src/components/NewLibrary/utils/longpress.tsx @@ -58,7 +58,6 @@ export default function useLongPress() { type: string, ) { const isExist = selectedPaths.some((item) => item.path === pathForCart); - // Handle Ctrl + Click for selection if (e.type === "click" && (e as React.MouseEvent).ctrlKey) { e.preventDefault(); @@ -69,26 +68,19 @@ export default function useLongPress() { } } else if (e.type === "contextmenu") { e.preventDefault(); // Prevent the default context menu from appearing - if (!isExist) { selectFolder(pathForCart, type, payload); } - // Toggle the menu state setIsMenuOpen((prev) => { - if (prev) { - deselectFolder(pathForCart); - } return !prev; }); } else { - if (!isExist) { - selectFolder(pathForCart, type, payload); + if (isMenuOpen) { + setIsMenuOpen(false); } else { - // If menu was open, deselect and close menu on row click - if (isMenuOpen) { - deselectFolder(pathForCart); - setIsMenuOpen(false); + if (!isExist && !isMenuOpen) { + selectFolder(pathForCart, type, payload); } else { deselectFolder(pathForCart); } From 37bd360b0aeecd62fc161c689c561462238135e9 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 12:56:58 -0400 Subject: [PATCH 152/337] feat: css updates to the data tables --- .../FeedOutputBrowser/FileBrowser.tsx | 88 +------------------ .../NewLibrary/components/LibraryTable.tsx | 8 +- 2 files changed, 3 insertions(+), 93 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 93bbfe6d6..b853d26ce 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -204,87 +204,6 @@ const FileBrowser = (props: FileBrowserProps) => { </DrawerPanelContent> ); - const tableRowItem = (item: any, type: string) => { - let iconType: string; - let icon: React.ReactNode = null; - let fsize = " "; - let fileName = ""; - iconType = "UNKNOWN FORMAT"; - const pathList = - type === "folder" || type === "link" - ? item.data.path.split("/") - : item.data.fname.split("/"); - - fileName = pathList[pathList.length - 1]; - if (type === "file" && fileName.indexOf(".") > -1) { - iconType = getFileExtension(fileName); - fsize = bytesToSize(item.data.fsize); - } else if (type === "link") { - fsize = bytesToSize(item.data.fsize); - iconType = type; - } else { - iconType = type; - } - const isPreviewing = selectedFile === item; - const backgroundColor = isDarkTheme ? "#002952" : "#E7F1FA"; - const path = type === "file" ? item.data.fname : item.data.path; - - const isSelected = - selectedPaths.length > 0 && - selectedPaths.some((payload) => payload.path === path); - const selectedBgRow = getBackgroundRowColor(isSelected, isDarkTheme); - - icon = getIcon(iconType, isDarkTheme); - const fileNameComponent = ( - <div - style={{ - backgroundColor: isPreviewing ? backgroundColor : "inherit", - }} - > - <Button - onClick={(e) => { - e.stopPropagation(); - handleItem(item, type); - }} - icon={icon} - variant="link" - style={{ padding: "0" }} - > - {fileName} - </Button> - </div> - ); - - return ( - <FolderContextMenu - key={path} // Assuming 'item' has an 'id' property - origin={{ - type: OperationContext.FILEBROWSER, - additionalKeys: [additionalKey], - }} - > - <Tr - style={{ - background: selectedBgRow, - }} - onClick={(e) => { - handleOnClick(e, item, path, type); - }} - onContextMenu={(e) => { - handleOnClick(e, item, path, type); - }} - > - <Td dataLabel={columnNames.name}>{fileNameComponent}</Td> - <Td dataLabel={columnNames.created}> - {format(new Date(item.data.creation_date), "dd MMM yyyy, HH:mm")} - </Td> - <Td dataLabel={columnNames.creator}>{item.data.owner_username}</Td> - <Td dataLabel={columnNames.size}>{fsize}</Td> - </Tr> - </FolderContextMenu> - ); - }; - return ( <Grid hasGutter className="file-browser"> {contextHolder} @@ -337,11 +256,8 @@ const FileBrowser = (props: FileBrowserProps) => { )} </div> </div> - <Table aria-label="file-browser-table" variant="compact"> - <Thead - aria-label="file-browser-table" - className="file-browser-table--head" - > + <Table variant="compact"> + <Thead aria-label="file-browser-table"> <Tr> <Th aria-label="file-name">{columnNames.name}</Th> <Th aria-label="file-creator">{columnNames.created}</Th> diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 66d88d1cb..f4f2fc0e2 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -155,7 +155,6 @@ const BaseRow: React.FC<RowProps> = ({ > <Td style={{ - paddingInlineEnd: 0, maxWidth: "1em", }} > @@ -170,12 +169,7 @@ const BaseRow: React.FC<RowProps> = ({ }} /> </Td> - <Td - style={{ - paddingInlineStart: 0, - }} - dataLabel={columnNames.name} - > + <Td dataLabel={columnNames.name}> <Button onClick={(e) => { e.stopPropagation(); From 9537c8677259e251668bcddff878d43d83ed4f00 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 13:13:56 -0400 Subject: [PATCH 153/337] refactors: Minor Updates --- src/components/PipelinesCopy/utils.ts | 3 ++- src/components/Store/index.tsx | 4 ++-- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/src/components/PipelinesCopy/utils.ts b/src/components/PipelinesCopy/utils.ts index 211de80f1..73c25537e 100644 --- a/src/components/PipelinesCopy/utils.ts +++ b/src/components/PipelinesCopy/utils.ts @@ -1,4 +1,5 @@ -import type { Client, Plugin, PluginMeta } from "@fnndsc/chrisapi"; +import type { Plugin, PluginMeta } from "@fnndsc/chrisapi"; +import type Client from "@fnndsc/chrisapi"; import axios from "axios"; import { fetchResource } from "../../api/common"; diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index 169848e96..d91318964 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -31,10 +31,10 @@ import { format } from "date-fns"; import { isEmpty } from "lodash"; import { type Ref, useEffect, useState } from "react"; import { Cookies, useCookies } from "react-cookie"; -import { Alert, Spin, Typography, notification } from "../Antd"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useTypedSelector } from "../../store/hooks"; -import { InfoIcon, SpinContainer } from "../Common"; +import { Alert, Spin, Typography, notification } from "../Antd"; +import { SpinContainer } from "../Common"; import { CheckCircleIcon, SearchIcon } from "../Icons"; import "../SinglePlugin/singlePlugin.css"; import WrapperConnect from "../Wrapper"; From 4310e3a987dc3d5ec3523a82b1c7db2f8a1ce582 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 13:20:54 -0400 Subject: [PATCH 154/337] feat: CSS improvements in the Library Table --- src/components/NewLibrary/components/LibraryTable.tsx | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index f4f2fc0e2..10072796c 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -155,7 +155,9 @@ const BaseRow: React.FC<RowProps> = ({ > <Td style={{ - maxWidth: "1em", + maxWidth: "0.5em", + paddingInlineEnd: "0", + paddingInlineStart: "1.5em", }} > <Checkbox @@ -169,7 +171,12 @@ const BaseRow: React.FC<RowProps> = ({ }} /> </Td> - <Td dataLabel={columnNames.name}> + <Td + style={{ + paddingInlineStart: "0", + }} + dataLabel={columnNames.name} + > <Button onClick={(e) => { e.stopPropagation(); From c5670004eb31213aa6f3ce1f8c6704daf0759680 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 14:00:12 -0400 Subject: [PATCH 155/337] feat: Fix Store Bug --- src/components/PipelinesCopy/utils.ts | 19 +++++++++++-------- 1 file changed, 11 insertions(+), 8 deletions(-) diff --git a/src/components/PipelinesCopy/utils.ts b/src/components/PipelinesCopy/utils.ts index 73c25537e..c5f4393fe 100644 --- a/src/components/PipelinesCopy/utils.ts +++ b/src/components/PipelinesCopy/utils.ts @@ -1,5 +1,4 @@ -import type { Plugin, PluginMeta } from "@fnndsc/chrisapi"; -import type Client from "@fnndsc/chrisapi"; +import type { Client, Plugin, PluginMeta } from "@fnndsc/chrisapi"; import axios from "axios"; import { fetchResource } from "../../api/common"; @@ -10,11 +9,6 @@ interface Params { name_exact?: string; } -const defaultParams = { - limit: 20, - offset: 0, -}; - /** * Fetches plugin metadata from the ChRIS store. * @param {Client} client - The ChRIS API client. @@ -29,7 +23,10 @@ export const fetchPluginMetas = async (client: Client, params?: Params) => { try { const { resource: pluginMetas } = await fetchResource<PluginMeta>( - params || defaultParams, + params || { + limit: 20, + offset: 0, + }, boundFn, ); return pluginMetas; @@ -47,11 +44,17 @@ export const fetchPluginMetas = async (client: Client, params?: Params) => { export const fetchPluginForMeta = async (pluginMeta: PluginMeta) => { const fn = pluginMeta.getPlugins; const boundFn = fn.bind(pluginMeta); + const defaultParams = { + limit: 20, + offset: 0, + }; try { const { resource: plugins } = await fetchResource(defaultParams, boundFn); + return plugins as Plugin[]; } catch (error) { + console.log("Error", error); if (error instanceof Error) { throw new Error(error.message); } From bf24d1d35cf6070c25d6e8fb20e491f815e40a07 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 14:26:14 -0400 Subject: [PATCH 156/337] feat: Add spacing --- .../NewLibrary/components/LibraryTable.tsx | 15 ++------------- 1 file changed, 2 insertions(+), 13 deletions(-) diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 10072796c..f6b98a062 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -153,13 +153,7 @@ const BaseRow: React.FC<RowProps> = ({ handleOnClick(e, resource, path, type); }} > - <Td - style={{ - maxWidth: "0.5em", - paddingInlineEnd: "0", - paddingInlineStart: "1.5em", - }} - > + <Td> <Checkbox name={name} isChecked={isSelected} @@ -171,12 +165,7 @@ const BaseRow: React.FC<RowProps> = ({ }} /> </Td> - <Td - style={{ - paddingInlineStart: "0", - }} - dataLabel={columnNames.name} - > + <Td dataLabel={columnNames.name}> <Button onClick={(e) => { e.stopPropagation(); From 955e5c6eb28f45c9ba2664b9b3396380e6d81dca Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 16:21:52 -0400 Subject: [PATCH 157/337] feat: Update resource interactions based on the focus group --- .../FeedOutputBrowser/FileBrowser.tsx | 32 ++------ src/components/Feeds/FeedListView.tsx | 8 +- .../NewLibrary/components/FileCard.tsx | 12 +-- .../NewLibrary/components/FolderCard.tsx | 12 +-- .../NewLibrary/components/LibraryTable.tsx | 51 ++++++++----- src/components/NewLibrary/utils/longpress.tsx | 75 ++++++++++++------- src/components/PipelinesCopy/utils.ts | 5 +- 7 files changed, 99 insertions(+), 96 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index b853d26ce..57bf02fbe 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -15,15 +15,13 @@ import { Grid, Tooltip, } from "@patternfly/react-core"; -import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; -import { format } from "date-fns"; +import { Table, Tbody, Th, Thead, Tr } from "@patternfly/react-table"; import { useContext, useEffect } from "react"; import { useDispatch } from "react-redux"; import { getFileName, getLinkFileName, } from "../NewLibrary/components/FileCard"; -import { getFileExtension } from "../../api/model"; import { setFilePreviewPanel } from "../../store/drawer/drawerSlice"; import { clearSelectedFile, @@ -31,12 +29,11 @@ import { } from "../../store/explorer/explorerSlice"; import useDownload, { useTypedSelector } from "../../store/hooks"; import { notification } from "../Antd"; -import { ClipboardCopyContainer, SpinContainer, getIcon } from "../Common"; +import { ClipboardCopyContainer, SpinContainer } from "../Common"; import { ThemeContext } from "../DarkTheme/useTheme"; import { DrawerActionButton } from "../Feeds/DrawerUtils"; import { handleMaximize, handleMinimize } from "../Feeds/utilties"; import { HomeIcon } from "../Icons"; -import { FolderContextMenu } from "../NewLibrary/components/ContextMenu"; import { getFolderName } from "../NewLibrary/components/FolderCard"; import { FolderRow, @@ -45,13 +42,10 @@ import { } from "../NewLibrary/components/LibraryTable"; import Operations from "../NewLibrary/components/Operations"; import { OperationContext } from "../NewLibrary/context"; -import useLongPress, { - getBackgroundRowColor, -} from "../NewLibrary/utils/longpress"; +import useLongPress from "../NewLibrary/utils/longpress"; import FileDetailView from "../Preview/FileDetailView"; import XtkViewer from "../XtkViewer/XtkViewer"; import type { FileBrowserProps } from "./types"; -import { bytesToSize } from "./utilities"; const previewAnimation = [{ opacity: "0.0" }, { opacity: "1.0" }]; @@ -85,7 +79,6 @@ const FileBrowser = (props: FileBrowserProps) => { const selectedFile = useTypedSelector((state) => state.explorer.selectedFile); const drawerState = useTypedSelector((state) => state.drawers); const username = useTypedSelector((state) => state.user.username); - const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { folderFiles, linkFiles, children, path } = pluginFilesPayload; const breadcrumb = path.split("/"); @@ -158,21 +151,6 @@ const FileBrowser = (props: FileBrowserProps) => { ?.animate(previewAnimation, previewAnimationTiming); }; - const handleItem = ( - item: FileBrowserFolderFile | FileBrowserFolder, - type: string, - ) => { - if (type === "link" || type === "folder") { - handleFileClick(item.data.path); - } - - if (type === "file") { - toggleAnimation(); - dispatch(setSelectedFile(item as FileBrowserFolderFile)); - !drawerState.preview.open && dispatch(setFilePreviewPanel()); - } - }; - const previewPanel = ( <DrawerPanelContent className="file-browser__previewPanel" @@ -306,10 +284,10 @@ const FileBrowser = (props: FileBrowserProps) => { size={resource.data.fsize} computedPath={path} handleFolderClick={() => { - handleFileClick(resource.data.path); + return; }} handleFileClick={() => { - return; + handleFileClick(resource.data.path); }} /> ); diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 6fe615fb6..047c54f25 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -307,12 +307,10 @@ const TableRow: React.FC<TableRowProps> = ({ }} onClick={async (e) => { e.stopPropagation(); - if (e.ctrlKey || isMenuOpen) { - const payload = await getFolderForThisFeed(); - handleOnClick(e, payload, feed.data.folder_path, "folder"); - } else { + const payload = await getFolderForThisFeed(); + handleOnClick(e, payload, feed.data.folder_path, "folder", () => { onFeedNameClick(); - } + }); }} > <Td> diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index 69143a2f3..080e3bfae 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -256,11 +256,9 @@ export const SubFileCard: React.FC<SubFileCardProps> = ({ const handleClick = (e: React.MouseEvent<HTMLElement, MouseEvent>) => { e.stopPropagation(); - if (e.ctrlKey || handlers.isMenuOpen) { - handlers.handleOnClick(e, file, file.data.fname, "file"); - } else { + handlers.handleOnClick(e, file, file.data.fname, "file", () => { setIsPreview(!preview); - } + }); }; const handleCheckboxChange = (e: React.FormEvent<HTMLInputElement>) => { @@ -356,11 +354,9 @@ export const SubLinkCard: React.FC<SubLinkCardProps> = ({ const handleClick = (e: React.MouseEvent<HTMLElement, MouseEvent>) => { e.stopPropagation(); - if (e.ctrlKey || handlers.isMenuOpen) { - handlers.handleOnClick(e, linkFile, linkFile.data.path, "linkFile"); - } else { + handlers.handleOnClick(e, linkFile, linkFile.data.path, "linkFile", () => { navigate(linkFile.data.path); - } + }); }; const handleCheckboxChange = (e: React.FormEvent<HTMLInputElement>) => { diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index 8f0c2b033..f08db70c8 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -18,9 +18,9 @@ import { elipses } from "../../../api/common"; import { useTypedSelector } from "../../../store/hooks"; import { ThemeContext } from "../../DarkTheme/useTheme"; import { FolderIcon } from "../../Icons"; +import { OperationContext } from "../context"; import useLongPress, { getBackgroundRowColor } from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; -import { OperationContext } from "../context"; type Pagination = { totalCount: number; @@ -71,8 +71,7 @@ export const SubFolderCard: React.FC<SubFolderCardProps> = (props) => { const isDarkTheme = useContext(ThemeContext).isDarkTheme; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); - const { handleOnClick, handleOnMouseDown, handleCheckboxChange, isMenuOpen } = - handlers; + const { handleOnClick, handleOnMouseDown, handleCheckboxChange } = handlers; const folderName = getFolderName(folder, computedPath); const creationDate = folder.data.creation_date; @@ -136,12 +135,9 @@ export const SubFolderCard: React.FC<SubFolderCardProps> = (props) => { isCompact isFlat onClick={(e) => { - e.stopPropagation(); - if (e.ctrlKey || isMenuOpen) { - handleOnClick(e, folder, folder.data.path, "folder"); - } else { + handleOnClick(e, folder, folder.data.path, "folder", () => { handleFolderClick(folderName); - } + }); }} onContextMenu={(e) => handleOnClick(e, folder, folder.data.path, "folder") diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index f6b98a062..d8a2298c5 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -56,8 +56,8 @@ interface RowProps { size: number; type: "folder" | "file" | "link"; computedPath: string; - handleFolderClick: (folderName: string) => void; - handleFileClick: (file: FileBrowserFolderFile) => void; + handleFolderClick: () => void; + handleFileClick: () => void; } const BaseRow: React.FC<RowProps> = ({ @@ -71,9 +71,8 @@ const BaseRow: React.FC<RowProps> = ({ handleFolderClick, handleFileClick, }) => { - const navigate = useNavigate(); const { handlers } = useLongPress(); - const { handleOnClick, handleCheckboxChange, isMenuOpen } = handlers; + const { handleOnClick, handleCheckboxChange } = handlers; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const isDarkTheme = useContext(ThemeContext).isDarkTheme; const rowRef = useRef<HTMLTableRowElement>(null); // Create a ref for the row @@ -117,18 +116,18 @@ const BaseRow: React.FC<RowProps> = ({ const handleItem = () => { if (type === "folder") { - handleFolderClick(name); + handleFolderClick(); } else if (type === "link") { - navigate(resource.data.path); + handleFileClick(); } else if (type === "file") { - handleFileClick(resource as FileBrowserFolderFile); + handleFileClick(); } }; const path = - type === "file" || type === "link" - ? resource.data.fname - : resource.data.path; + type === "folder" || type === "link" + ? resource.data.path + : resource.data.fname; return ( <FolderContextMenu @@ -143,11 +142,9 @@ const BaseRow: React.FC<RowProps> = ({ style={{ background: highlightedBgRow, cursor: "pointer" }} onClick={(e) => { e.stopPropagation(); - if (e.ctrlKey || isMenuOpen) { - handleOnClick(e, resource, path, type); - } else { + handleOnClick(e, resource, path, type, () => { handleItem(); - } + }); }} onContextMenu={(e) => { handleOnClick(e, resource, path, type); @@ -212,6 +209,7 @@ const LibraryTable: React.FC<TableProps> = ({ computedPath, handleFolderClick, }) => { + const navigate = useNavigate(); const [preview, setShowPreview] = useState(false); const [selectedFile, setSelectedFile] = useState<FileBrowserFolderFile>(); @@ -261,8 +259,13 @@ const LibraryTable: React.FC<TableProps> = ({ owner=" " size={0} computedPath={computedPath} - handleFolderClick={handleFolderClick} - handleFileClick={handleFileClick} + handleFolderClick={() => { + const name = getFolderName(resource.data.path, computedPath); + handleFolderClick(name); + }} + handleFileClick={() => { + return; + }} /> ))} {data.files.map((resource: FileBrowserFolderFile) => ( @@ -274,8 +277,12 @@ const LibraryTable: React.FC<TableProps> = ({ owner={resource.data.owner_username} size={resource.data.fsize} computedPath={computedPath} - handleFolderClick={handleFolderClick} - handleFileClick={handleFileClick} + handleFolderClick={() => { + return; + }} + handleFileClick={() => { + handleFileClick(resource); + }} /> ))} {data.linkFiles.map((resource: FileBrowserFolderLinkFile) => ( @@ -287,8 +294,12 @@ const LibraryTable: React.FC<TableProps> = ({ owner={resource.data.owner_username} size={resource.data.fsize} computedPath={computedPath} - handleFolderClick={handleFolderClick} - handleFileClick={handleFileClick} + handleFolderClick={() => { + return; + }} + handleFileClick={() => { + navigate(resource.data.path); + }} /> ))} </Tbody> diff --git a/src/components/NewLibrary/utils/longpress.tsx b/src/components/NewLibrary/utils/longpress.tsx index 65aa0dc07..184bc16c6 100644 --- a/src/components/NewLibrary/utils/longpress.tsx +++ b/src/components/NewLibrary/utils/longpress.tsx @@ -51,41 +51,66 @@ export default function useLongPress() { dispatch(clearSelectedPaths(pathForCart)); } + const clickTimer = useRef<ReturnType<typeof setTimeout> | null>(null); + const clickCount = useRef(0); function handleOnClick( e: React.MouseEvent | React.TouchEvent, payload: PayloadTypes, pathForCart: string, type: string, + optionalCallback?: () => void, ) { const isExist = selectedPaths.some((item) => item.path === pathForCart); - // Handle Ctrl + Click for selection - if (e.type === "click" && (e as React.MouseEvent).ctrlKey) { - e.preventDefault(); - if (!isExist) { - selectFolder(pathForCart, type, payload); - } else { - deselectFolder(pathForCart); - } - } else if (e.type === "contextmenu") { - e.preventDefault(); // Prevent the default context menu from appearing - if (!isExist) { - selectFolder(pathForCart, type, payload); - } - // Toggle the menu state - setIsMenuOpen((prev) => { - return !prev; - }); - } else { - if (isMenuOpen) { - setIsMenuOpen(false); - } else { - if (!isExist && !isMenuOpen) { - selectFolder(pathForCart, type, payload); + + clickCount.current += 1; + if (clickTimer.current) { + clearTimeout(clickTimer.current); + } + + clickTimer.current = setTimeout(() => { + if (clickCount.current === 1) { + // Single click + if (e.ctrlKey) { + // Ctrl + Click: Toggle selection + if (isExist) { + deselectFolder(pathForCart); + } else { + selectFolder(pathForCart, type, payload); + } + } else if (e.type === "contextmenu") { + e.preventDefault(); // Prevent the default context menu from appearing + if (!isExist) { + selectFolder(pathForCart, type, payload); + } + // Toggle the menu state + setIsMenuOpen((prev) => { + if (prev) { + deselectFolder(pathForCart); + } + return !prev; + }); } else { - deselectFolder(pathForCart); + if (isMenuOpen) { + // The context menu is also closed by a right click + // We don't want it to confuse it with select/deselect of a folder + setIsMenuOpen(false); + } else { + // Normal click: Select/Deselect + if (isExist) { + deselectFolder(pathForCart); + } else { + selectFolder(pathForCart, type, payload); + } + } } + } else if (clickCount.current === 2) { + // Double click: Enter folder + optionalCallback?.(); } - } + + clickCount.current = 0; + }, 300); // Adjust this delay as needed + // Handle Ctrl + Click for selection } const handleCheckboxChange = ( diff --git a/src/components/PipelinesCopy/utils.ts b/src/components/PipelinesCopy/utils.ts index c5f4393fe..ed14cf527 100644 --- a/src/components/PipelinesCopy/utils.ts +++ b/src/components/PipelinesCopy/utils.ts @@ -1,4 +1,5 @@ -import type { Client, Plugin, PluginMeta } from "@fnndsc/chrisapi"; +import type { Plugin, PluginMeta } from "@fnndsc/chrisapi"; +import type Client from "@fnndsc/chrisapi"; import axios from "axios"; import { fetchResource } from "../../api/common"; @@ -51,10 +52,8 @@ export const fetchPluginForMeta = async (pluginMeta: PluginMeta) => { try { const { resource: plugins } = await fetchResource(defaultParams, boundFn); - return plugins as Plugin[]; } catch (error) { - console.log("Error", error); if (error instanceof Error) { throw new Error(error.message); } From 6fc1b5abf1258dfcf92411f57302ce29c63c8a1b Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 16:27:09 -0400 Subject: [PATCH 158/337] fix: Fix Folder Click --- src/components/NewLibrary/components/LibraryTable.tsx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index d8a2298c5..561ac3797 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -260,7 +260,7 @@ const LibraryTable: React.FC<TableProps> = ({ size={0} computedPath={computedPath} handleFolderClick={() => { - const name = getFolderName(resource.data.path, computedPath); + const name = getFolderName(resource, computedPath); handleFolderClick(name); }} handleFileClick={() => { From 618d542e3e8b680543972cb249131ebda1765863 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 29 Aug 2024 16:53:23 -0400 Subject: [PATCH 159/337] feat: Update the tables to use the patternfly select instead of Checkboxes --- .../FeedOutputBrowser/FileBrowser.tsx | 99 ++++++++++--------- src/components/Feeds/FeedListView.tsx | 1 + src/components/NewLibrary/components/Cart.tsx | 2 +- .../NewLibrary/components/LayoutSwitch.tsx | 4 +- .../NewLibrary/components/LibraryTable.tsx | 29 ++++-- 5 files changed, 79 insertions(+), 56 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 57bf02fbe..174c828a3 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -247,55 +247,62 @@ const FileBrowser = (props: FileBrowserProps) => { <SpinContainer title="Fetching Files for this path..." /> ) : ( <Tbody> - {folderFiles.map((resource: FileBrowserFolderFile) => { - return ( - <FileRow - key={resource.data.fname} - resource={resource} - name={getFileName(resource)} - date={resource.data.creation_date} - owner={resource.data.owner_username} - size={resource.data.fsize} - computedPath={path} - handleFolderClick={() => { - return; - }} - handleFileClick={() => { - toggleAnimation(); - dispatch( - setSelectedFile( - resource as FileBrowserFolderFile, - ), - ); - !drawerState.preview.open && - dispatch(setFilePreviewPanel()); - }} - /> - ); - })} - {linkFiles.map((resource: FileBrowserFolderLinkFile) => { - return ( - <LinkRow - key={resource.data.path} - resource={resource} - name={getLinkFileName(resource)} - date={resource.data.creation_date} - owner={resource.data.owner_username} - size={resource.data.fsize} - computedPath={path} - handleFolderClick={() => { - return; - }} - handleFileClick={() => { - handleFileClick(resource.data.path); - }} - /> - ); - })} + {folderFiles.map( + (resource: FileBrowserFolderFile, index) => { + return ( + <FileRow + rowIndex={index} + key={resource.data.fname} + resource={resource} + name={getFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={path} + handleFolderClick={() => { + return; + }} + handleFileClick={() => { + toggleAnimation(); + dispatch( + setSelectedFile( + resource as FileBrowserFolderFile, + ), + ); + !drawerState.preview.open && + dispatch(setFilePreviewPanel()); + }} + /> + ); + }, + )} + {linkFiles.map( + (resource: FileBrowserFolderLinkFile, index) => { + return ( + <LinkRow + rowIndex={index} + key={resource.data.path} + resource={resource} + name={getLinkFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={path} + handleFolderClick={() => { + return; + }} + handleFileClick={() => { + handleFileClick(resource.data.path); + }} + /> + ); + }, + )} - {children.map((resource: FileBrowserFolder) => { + {children.map((resource: FileBrowserFolder, index) => { return ( <FolderRow + rowIndex={index} key={resource.data.path} resource={resource} name={getFolderName(resource, path)} diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 047c54f25..f070785ba 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -321,6 +321,7 @@ const TableRow: React.FC<TableRowProps> = ({ /> </Td> <Td dataLabel={columnNames.id}>{feed.data.id}</Td> + <Td dataLabel={columnNames.analysis}> <FeedInfoColumn feed={feed} onClick={onFeedNameClick} /> </Td> diff --git a/src/components/NewLibrary/components/Cart.tsx b/src/components/NewLibrary/components/Cart.tsx index 0a80d2604..2a67aac1f 100644 --- a/src/components/NewLibrary/components/Cart.tsx +++ b/src/components/NewLibrary/components/Cart.tsx @@ -5,6 +5,7 @@ import { Link } from "react-router-dom"; import { getFileName } from "../../../api/common"; import { cancelUpload, + clearCart, clearDownloadStatus, clearUploadState, setToggleCart, @@ -23,7 +24,6 @@ import { DotsIndicator, EmptyStateComponent } from "../../Common"; import { CheckCircleIcon, CloseIcon, FileIcon, FolderIcon } from "../../Icons"; import { ShowInFolder, TitleNameClipped, elipses } from "../utils/longpress"; import "./Cart.css"; -import { clearCart } from "../../../store/cart/cartSlice"; import ProgressRing from "./RadialProgress"; const Cart = () => { diff --git a/src/components/NewLibrary/components/LayoutSwitch.tsx b/src/components/NewLibrary/components/LayoutSwitch.tsx index b17fec4fc..34bc15833 100644 --- a/src/components/NewLibrary/components/LayoutSwitch.tsx +++ b/src/components/NewLibrary/components/LayoutSwitch.tsx @@ -3,10 +3,10 @@ import { ToggleGroupItem, type ToggleGroupItemProps, } from "@patternfly/react-core"; -import { BarsIcon, GripVerticalIcon } from "../../Icons"; -import { switchLibraryLayout } from "../../../store/cart/cartSlice"; import { useDispatch } from "react-redux"; +import { switchLibraryLayout } from "../../../store/cart/cartSlice"; import { useTypedSelector } from "../../../store/hooks"; +import { BarsIcon, GripVerticalIcon } from "../../Icons"; const LayoutSwitch = () => { const currentLayout = useTypedSelector((state) => state.cart.currentLayout); diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 561ac3797..101e97aa1 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -3,7 +3,7 @@ import type { FileBrowserFolderFile, FileBrowserFolderLinkFile, } from "@fnndsc/chrisapi"; -import { Button, Checkbox } from "@patternfly/react-core"; +import { Button } from "@patternfly/react-core"; import { Caption, Table, @@ -46,6 +46,7 @@ const columnNames = { }; interface RowProps { + rowIndex: number; resource: | FileBrowserFolder | FileBrowserFolderFile @@ -61,6 +62,7 @@ interface RowProps { } const BaseRow: React.FC<RowProps> = ({ + rowIndex, resource, name, date, @@ -150,8 +152,16 @@ const BaseRow: React.FC<RowProps> = ({ handleOnClick(e, resource, path, type); }} > - <Td> - <Checkbox + <Td + select={{ + rowIndex: rowIndex, + onSelect: (event) => + handleCheckboxChange(event, path, resource, type), + isSelected: isSelected, + }} + > + {/* +<Checkbox name={name} isChecked={isSelected} id="Select Resources" @@ -161,6 +171,8 @@ const BaseRow: React.FC<RowProps> = ({ handleCheckboxChange(event, path, resource, type); }} /> + + */} </Td> <Td dataLabel={columnNames.name}> <Button @@ -176,7 +188,7 @@ const BaseRow: React.FC<RowProps> = ({ </Button> {isNewResource && ( <Tag style={{ marginLeft: "0.25em" }} color="#3E8635"> - Recently Added + Newly Added </Tag> )} </Td> @@ -250,8 +262,9 @@ const LibraryTable: React.FC<TableProps> = ({ </Tr> </Thead> <Tbody> - {data.folders.map((resource: FileBrowserFolder) => ( + {data.folders.map((resource: FileBrowserFolder, index) => ( <FolderRow + rowIndex={index} key={resource.data.path} resource={resource} name={getFolderName(resource, computedPath)} @@ -268,8 +281,9 @@ const LibraryTable: React.FC<TableProps> = ({ }} /> ))} - {data.files.map((resource: FileBrowserFolderFile) => ( + {data.files.map((resource: FileBrowserFolderFile, index) => ( <FileRow + rowIndex={index} key={resource.data.fname} resource={resource} name={getFileName(resource)} @@ -285,8 +299,9 @@ const LibraryTable: React.FC<TableProps> = ({ }} /> ))} - {data.linkFiles.map((resource: FileBrowserFolderLinkFile) => ( + {data.linkFiles.map((resource: FileBrowserFolderLinkFile, index) => ( <LinkRow + rowIndex={index} key={resource.data.path} resource={resource} name={getLinkFileName(resource)} From 6a8fde96ab2097110cd19c1b1f44913b01722a4b Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 30 Aug 2024 10:26:28 -0400 Subject: [PATCH 160/337] feat: Remove unused code --- .../NewLibrary/components/LibraryTable.tsx | 16 +--------------- src/components/Store/index.tsx | 5 +---- 2 files changed, 2 insertions(+), 19 deletions(-) diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 101e97aa1..df69c996d 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -159,21 +159,7 @@ const BaseRow: React.FC<RowProps> = ({ handleCheckboxChange(event, path, resource, type), isSelected: isSelected, }} - > - {/* -<Checkbox - name={name} - isChecked={isSelected} - id="Select Resources" - aria-label="Select resources" - onClick={(e) => e.stopPropagation()} - onChange={(event) => { - handleCheckboxChange(event, path, resource, type); - }} - /> - - */} - </Td> + /> <Td dataLabel={columnNames.name}> <Button onClick={(e) => { diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index d91318964..2e2e9daeb 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -33,20 +33,17 @@ import { type Ref, useEffect, useState } from "react"; import { Cookies, useCookies } from "react-cookie"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useTypedSelector } from "../../store/hooks"; -import { Alert, Spin, Typography, notification } from "../Antd"; +import { Alert, Spin, notification } from "../Antd"; import { SpinContainer } from "../Common"; import { CheckCircleIcon, SearchIcon } from "../Icons"; import "../SinglePlugin/singlePlugin.css"; import WrapperConnect from "../Wrapper"; - import { fetchPluginForMeta, fetchPluginMetas, handleInstallPlugin, } from "../PipelinesCopy/utils"; -const { Paragraph } = Typography; - const Store = () => { const isStaff = useTypedSelector((state) => state.user.isStaff); const queryClient = useQueryClient(); From 4cef9a91c41722eca1ea52545d2e8889ba444755 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 3 Sep 2024 11:28:10 -0400 Subject: [PATCH 161/337] feat: Update the Feed Table to use Patternfly's select elements for better small screen compatability --- src/api/model.ts | 2 +- .../FeedOutputBrowser/FileBrowser.tsx | 1 + src/components/Feeds/FeedListView.tsx | 85 +++++++------------ .../NewLibrary/components/LibraryTable.tsx | 19 +---- src/components/NewLibrary/utils/longpress.tsx | 2 +- 5 files changed, 40 insertions(+), 69 deletions(-) diff --git a/src/api/model.ts b/src/api/model.ts index 7ccb51dcf..85725f9ee 100644 --- a/src/api/model.ts +++ b/src/api/model.ts @@ -186,7 +186,7 @@ export const fileViewerMap: any = { jpg: "ImageDisplay", jpeg: "ImageDisplay", gif: "ImageDisplay", - dcm: "DcmDisplay", + dcm: "NiiVueDisplay", default: "CatchallDisplay", nii: "NiiVueDisplay", gz: "CatchallDisplay", diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 174c828a3..459184cb1 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -237,6 +237,7 @@ const FileBrowser = (props: FileBrowserProps) => { <Table variant="compact"> <Thead aria-label="file-browser-table"> <Tr> + <Th /> <Th aria-label="file-name">{columnNames.name}</Th> <Th aria-label="file-creator">{columnNames.created}</Th> <Th aria-label="file-owner">{columnNames.creator}</Th> diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index f070785ba..7050ae2bd 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -232,13 +232,14 @@ interface TableRowProps { } const TableRow: React.FC<TableRowProps> = ({ + rowIndex, feed, columnNames, additionalKeys, }) => { const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); - const { handleOnClick, isMenuOpen } = handlers; + const { handleOnClick } = handlers; const navigate = useNavigate(); const [intervalMs, setIntervalMs] = useState(2000); const { isDarkTheme } = useContext(ThemeContext); @@ -306,20 +307,43 @@ const TableRow: React.FC<TableRowProps> = ({ handleOnClick(e, payload, feed.data.folder_path, "folder"); }} onClick={async (e) => { - e.stopPropagation(); + console.log("Clicked"); + e?.stopPropagation(); const payload = await getFolderForThisFeed(); handleOnClick(e, payload, feed.data.folder_path, "folder", () => { onFeedNameClick(); }); }} + isRowSelected={isSelected} > - <Td> - <BulkCheckbox - feed={feed} - getFolderForThisFeed={getFolderForThisFeed} - isSelected={isSelected} - /> - </Td> + <Td + onClick={(e) => e.stopPropagation()} + select={{ + rowIndex: rowIndex, + isSelected: isSelected, + onSelect: async (event) => { + event.stopPropagation(); + const isChecked = event.currentTarget.checked; // Capture the checked value before the async call + const payload = await getFolderForThisFeed(); + + // Create a new event object with the captured properties + const newEvent = { + ...event, + stopPropagation: () => event.stopPropagation(), + preventDefault: () => event.preventDefault(), + currentTarget: { ...event.currentTarget, checked: isChecked }, + }; + + // Pass the new event object to the handler function + handlers.handleCheckboxChange( + newEvent, + feed.data.folder_path, + payload, + "folder", + ); + }, + }} + /> <Td dataLabel={columnNames.id}>{feed.data.id}</Td> <Td dataLabel={columnNames.analysis}> @@ -343,49 +367,6 @@ const TableRow: React.FC<TableRowProps> = ({ ); }; -const BulkCheckbox = ({ - feed, - getFolderForThisFeed, - isSelected, -}: { - feed: Feed; - getFolderForThisFeed: () => Promise<FileBrowserFolder>; - isSelected: boolean; -}) => { - const { handlers } = useLongPress(); - const handleCheckboxChange = handlers.handleCheckboxChange; - - return ( - <Checkbox - className={`${feed.data.name}-checkbox`} - isChecked={isSelected} - id={feed.data.id} - aria-label={`${feed.data.name}-checkbox`} - onClick={(e) => e.stopPropagation()} - onChange={async (event) => { - const isChecked = event.currentTarget.checked; // Capture the checked value before the async call - const payload = await getFolderForThisFeed(); - - // Create a new event object with the captured properties - const newEvent = { - ...event, - stopPropagation: () => event.stopPropagation(), - preventDefault: () => event.preventDefault(), - currentTarget: { ...event.currentTarget, checked: isChecked }, - }; - - // Pass the new event object to the handler function - handleCheckboxChange( - newEvent, - feed.data.folder_path, - payload, - "folder", - ); - }} - /> - ); -}; - const DonutUtilization = (props: { details: any; }) => { diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 101e97aa1..c4eb53c47 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -151,29 +151,18 @@ const BaseRow: React.FC<RowProps> = ({ onContextMenu={(e) => { handleOnClick(e, resource, path, type); }} + isSelectable={true} + isRowSelected={isSelected} > <Td + onClick={(e) => e.stopPropagation()} select={{ rowIndex: rowIndex, onSelect: (event) => handleCheckboxChange(event, path, resource, type), isSelected: isSelected, }} - > - {/* -<Checkbox - name={name} - isChecked={isSelected} - id="Select Resources" - aria-label="Select resources" - onClick={(e) => e.stopPropagation()} - onChange={(event) => { - handleCheckboxChange(event, path, resource, type); - }} - /> - - */} - </Td> + /> <Td dataLabel={columnNames.name}> <Button onClick={(e) => { diff --git a/src/components/NewLibrary/utils/longpress.tsx b/src/components/NewLibrary/utils/longpress.tsx index 184bc16c6..1a202cbeb 100644 --- a/src/components/NewLibrary/utils/longpress.tsx +++ b/src/components/NewLibrary/utils/longpress.tsx @@ -54,7 +54,7 @@ export default function useLongPress() { const clickTimer = useRef<ReturnType<typeof setTimeout> | null>(null); const clickCount = useRef(0); function handleOnClick( - e: React.MouseEvent | React.TouchEvent, + e: React.MouseEvent | React.TouchEvent | React.KeyboardEvent, payload: PayloadTypes, pathForCart: string, type: string, From d05bef586b936e2f25c83d5d687c429af002014a Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 3 Sep 2024 16:20:47 -0400 Subject: [PATCH 162/337] feat: Update create feed with file uploads in the feed table --- src/components/Feeds/FeedListView.tsx | 4 +- .../NewLibrary/components/ContextMenu.tsx | 22 +- .../NewLibrary/components/Operations.tsx | 85 +++--- .../NewLibrary/utils/useOperations.tsx | 242 +++++++++++------- src/store/cart/types.ts | 1 + 5 files changed, 208 insertions(+), 146 deletions(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 7050ae2bd..b7db6379e 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -1,8 +1,7 @@ -import type { Feed, FileBrowserFolder } from "@fnndsc/chrisapi"; +import type { Feed } from "@fnndsc/chrisapi"; import { ChartDonutUtilization } from "@patternfly/react-charts"; import { Button, - Checkbox, EmptyState, EmptyStateIcon, EmptyStateVariant, @@ -307,7 +306,6 @@ const TableRow: React.FC<TableRowProps> = ({ handleOnClick(e, payload, feed.data.folder_path, "folder"); }} onClick={async (e) => { - console.log("Clicked"); e?.stopPropagation(); const payload = await getFolderForThisFeed(); handleOnClick(e, payload, feed.data.folder_path, "folder", () => { diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index 55fa9fff6..b18df166a 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -24,13 +24,13 @@ interface ContextMenuProps { export const FolderContextMenu = (props: ContextMenuProps) => { const { children, origin, folderList, computedPath } = props; const { - modalInfo, - userError, + modalState, + userRelatedError, handleModalSubmitMutation, handleOperations, contextHolder, - setUserErrors, - setModalInfo, + setUserRelatedError, + setModalState, } = useFolderOperations( origin, computedPath, @@ -69,14 +69,14 @@ export const FolderContextMenu = (props: ContextMenuProps) => { }; const { modalTitle, inputLabel } = - modalTypeLabels[modalInfo.type] || modalTypeLabels.default; + modalTypeLabels[modalState.type] || modalTypeLabels.default; return ( <> <AddModal - operationType={modalInfo.type} - isOpen={modalInfo.isOpen} - onClose={() => setModalInfo({ isOpen: false, type: "" })} + operationType={modalState.type} + isOpen={modalState.isOpen} + onClose={() => setModalState({ isOpen: false, type: "" })} onSubmit={(inputValue, additionalValues) => handleModalSubmitMutation.mutate({ inputValue, @@ -101,13 +101,13 @@ export const FolderContextMenu = (props: ContextMenuProps) => { {children} </Dropdown> - {userError && ( + {userRelatedError && ( <Alert style={{ marginLeft: "1rem" }} type="error" - description={userError} + description={userRelatedError} closable - onClose={() => setUserErrors("")} + onClose={() => setUserRelatedError("")} /> )} </> diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 3144eaafc..b9a805b79 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -15,15 +15,10 @@ import { Tooltip, } from "@patternfly/react-core"; import type { DefaultError } from "@tanstack/react-query"; -import React, { - Fragment, - useEffect, - useImperativeHandle, - useMemo, - useState, -} from "react"; +import type React from "react"; +import { Fragment, useEffect, useMemo, useState } from "react"; import { useDispatch } from "react-redux"; -import { useLocation } from "react-router"; +import { matchPath, useLocation } from "react-router"; import { getFileName } from "../../../api/common"; import { removeSelectedPayload } from "../../../store/cart/cartSlice"; import { useTypedSelector } from "../../../store/hooks"; @@ -68,23 +63,24 @@ const items = [ { key: "folderUpload", label: "Folder Upload" }, ]; -const Operations = React.forwardRef((props: OperationProps, ref) => { +const Operations = (props: OperationProps) => { const location = useLocation(); const { origin, computedPath, folderList, customStyle, customClassName } = props; const dispatch = useDispatch(); const { - modalInfo, - userError, - folderInput, - fileInput, + modalState, + userRelatedError, + folderInputRef, + fileInputRef, handleFileChange, + createFeedWithFile, handleFolderChange, handleModalSubmitMutation, handleOperations, contextHolder, - setUserErrors, - setModalInfo, + setUserRelatedError, + setModalState, } = useFolderOperations( origin, computedPath, @@ -92,15 +88,6 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { location.pathname === "/feeds", ); - useImperativeHandle(ref, () => ({ - triggerFileUpload: () => { - fileInput.current?.click(); - }, - triggerFolderUpload: () => { - folderInput.current?.click(); - }, - })); - const { selectedPaths } = useTypedSelector((state) => state.cart); const selectedPathsCount = selectedPaths.length; @@ -145,13 +132,13 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { New </Button> </Dropdown> - {userError && ( + {userRelatedError && ( <Alert style={{ marginLeft: "1rem" }} type="error" - description={userError} + description={userRelatedError} closable - onClose={() => setUserErrors("")} + onClose={() => setUserRelatedError("")} /> )} </ToolbarItem> @@ -224,21 +211,21 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { ), [ contextHolder, - userError, + userRelatedError, selectedPaths, selectedPathsCount, dispatch, handleOperations, - setUserErrors, + setUserRelatedError, ], ); return ( <> <AddModal - operationType={modalInfo.type} - isOpen={modalInfo.isOpen} - onClose={() => setModalInfo({ isOpen: false, type: "" })} + operationType={modalState.type} + isOpen={modalState.isOpen} + onClose={() => setModalState({ isOpen: false, type: "" })} onSubmit={(inputValue, additionalValues) => handleModalSubmitMutation.mutate({ inputValue, @@ -246,11 +233,11 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { }) } modalTitle={ - modalTypeLabels[modalInfo.type]?.modalTitle ?? + modalTypeLabels[modalState.type]?.modalTitle ?? modalTypeLabels.default.modalTitle } inputLabel={ - modalTypeLabels[modalInfo.type]?.inputLabel ?? + modalTypeLabels[modalState.type]?.inputLabel ?? modalTypeLabels.default.inputLabel } indicators={{ @@ -261,19 +248,32 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { }} /> <input - ref={fileInput} + ref={fileInputRef} multiple={true} type="file" hidden - onChange={handleFileChange} + onChange={(e) => { + if (matchPath({ path: "/feeds", end: true }, location.pathname)) { + createFeedWithFile(e, "file"); + } else { + handleFileChange(e); + } + }} /> <input - ref={folderInput} + ref={folderInputRef} type="file" + //@ts-ignore webkitdirectory="" directory="" hidden - onChange={handleFolderChange} + onChange={(e) => { + if (matchPath({ path: "/feeds", end: true }, location.pathname)) { + createFeedWithFile(e, "folder"); + } else { + handleFolderChange(e); + } + }} /> <Toolbar style={{ ...customStyle?.toolbar }} @@ -294,7 +294,7 @@ const Operations = React.forwardRef((props: OperationProps, ref) => { </Toolbar> </> ); -}); +}; export default Operations; @@ -310,6 +310,10 @@ const modalTypeLabels: Record< modalTitle: "Share this Folder", inputLabel: "User Name", }, + createFeedWithFile: { + modalTitle: "Create Feed", + inputLabel: "Feed Name", + }, default: { modalTitle: "Create a new Folder", @@ -330,6 +334,9 @@ interface AddModalProps { error: DefaultError | null; clearErrors: () => void; }; + additionalValues?: { + [key: string]: any; + }; } export const AddModal = (props: AddModalProps) => { diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index a0f1b3e3d..018c59848 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -1,6 +1,5 @@ import type { FileBrowserFolderList } from "@fnndsc/chrisapi"; import { useMutation } from "@tanstack/react-query"; -import { create, isEmpty } from "lodash"; import { useContext, useRef, useState } from "react"; import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../../api/chrisapiclient"; @@ -18,9 +17,28 @@ import { type OriginState, useOperationsContext } from "../context"; import useDeletePayload from "../utils/useDeletePayload"; import useFeedOperations from "./useFeedOperations"; +interface ModalState { + type: string; + isOpen: boolean; + additionalProps?: Record<string, any>; +} + +export const getCurrentTimestamp = () => { + return new Date() + .toLocaleString("en-US", { + year: "numeric", + month: "short", + day: "numeric", + hour: "2-digit", + minute: "2-digit", + hour12: true, + }) + .replace(/[^a-zA-Z0-9]/g, "_"); +}; + export const useFolderOperations = ( origin: OriginState, - computedPath?: string, // This path is passed to for file upload and folder uploads in the library + computedPath?: string, folderList?: FileBrowserFolderList, createFeed?: boolean, ) => { @@ -28,17 +46,21 @@ export const useFolderOperations = ( const router = useContext(MainRouterContext); const { selectedPaths } = useTypedSelector((state) => state.cart); const username = useTypedSelector((state) => state.user.username); - const [modalInfo, setModalInfo] = useState({ isOpen: false, type: "" }); - const [userError, setUserErrors] = useState(""); + const [modalState, setModalState] = useState<ModalState>({ + isOpen: false, + type: "", + }); + const [userRelatedError, setUserRelatedError] = useState<string>(""); const dispatch = useDispatch(); - const folderInput = useRef<HTMLInputElement>(null); - const fileInput = useRef<HTMLInputElement>(null); - const [api, contextHolder] = notification.useNotification(); + const folderInputRef = useRef<HTMLInputElement>(null); + const fileInputRef = useRef<HTMLInputElement>(null); + const [notificationAPI, notificationContextHolder] = + notification.useNotification(); - const deleteMutation = useDeletePayload(origin, api); + const deleteMutation = useDeletePayload(origin, notificationAPI); const { handleDuplicateMutation, handleMergeMutation } = useFeedOperations( origin, - api, + notificationAPI, ); const resetInputField = (inputRef: React.RefObject<HTMLInputElement>) => { @@ -47,77 +69,90 @@ export const useFolderOperations = ( } }; - const getCurrentTimestamp = () => { - const timestamp = new Date().toLocaleString("en-US", { - year: "numeric", - month: "short", - day: "numeric", - hour: "2-digit", - minute: "2-digit", - hour12: true, - }); - return `${timestamp.replace(/[^a-zA-Z0-9]/g, "_")}`; - }; - - const handleFileChange = async (e: React.ChangeEvent<HTMLInputElement>) => { + const handleFileChange = async ( + event: React.ChangeEvent<HTMLInputElement>, + name?: string, + ) => { handleOrigin(origin); - const fileList = e.target.files || []; - const files = Array.from(fileList); - const uniqueName = getCurrentTimestamp(); - - const currentPath = createFeed + const files = Array.from(event.target.files || []); + const uniqueName = name + ? `${name}_${getCurrentTimestamp()}` + : getCurrentTimestamp(); + const uploadPath = createFeed ? `home/${username}/uploads/${uniqueName}` : computedPath; - (""); dispatch( startUpload({ files, isFolder: false, - currentPath: currentPath as string, + currentPath: uploadPath as string, invalidateFunc: invalidateQueries, createFeed, + nameForFeed: name, }), ); - resetInputField(fileInput); + resetInputField(fileInputRef); }; - const handleFolderChange = async (e: React.ChangeEvent<HTMLInputElement>) => { + const handleFolderChange = async ( + event: React.ChangeEvent<HTMLInputElement>, + name?: string, + ) => { handleOrigin(origin); - const fileList = e.target.files || []; - const files = Array.from(fileList); - const uniqueName = getCurrentTimestamp(); - - const currentPath = createFeed + const files = Array.from(event.target.files || []); + const uniqueName = name + ? `${name}_${getCurrentTimestamp()}` + : getCurrentTimestamp(); + const uploadPath = createFeed ? `home/${username}/uploads/${uniqueName}` : computedPath; + dispatch( startUpload({ files, isFolder: true, - currentPath: currentPath as string, + currentPath: uploadPath as string, invalidateFunc: invalidateQueries, createFeed, + nameForFeed: name, }), ); - resetInputField(folderInput); + resetInputField(folderInputRef); }; - const createFolder = async (inputValue: string) => { + const createFolder = async (folderName: string) => { handleOrigin(origin); - const finalPath = `${computedPath}/${inputValue}`; + const finalPath = `${computedPath}/${folderName}`; + try { await folderList?.post({ path: finalPath }); invalidateQueries(); } catch (error: any) { - const path = error?.response?.data?.path; - const message = !isEmpty(path) ? path[0] : "Failed to create a folder."; - throw new Error(message); + const errorMessage = + error?.response?.data?.path?.[0] || "Failed to create a folder."; + throw new Error(errorMessage); } }; + const createFeedWithFile = ( + event: React.ChangeEvent<HTMLInputElement>, + type: string, + ) => { + setModalState({ + type: "createFeedWithFile", + isOpen: true, + additionalProps: { + createFeedWithFile: { + event, + type, + }, + }, + }); + }; + const shareFolder = async ( - inputValue: string, + username: string, additionalValues?: AdditionalValues, ) => { const permissions = @@ -127,19 +162,16 @@ export const useFolderOperations = ( ? "r" : "w"; - for (const selectedPayload of selectedPaths) { - const { payload } = selectedPayload; + for (const selectedItem of selectedPaths) { + const { payload } = selectedItem; try { - await payload.addUserPermission(inputValue, permissions); - } catch (e: any) { - const username = e?.response?.data?.username; - const non_field_errors = e?.response?.data?.non_field_errors; - const message = !isEmpty(username) - ? username[0] - : !isEmpty(non_field_errors) - ? non_field_errors[0] - : "Failed to share this folder."; - throw new Error(message); + await payload.addUserPermission(username, permissions); + } catch (error: any) { + const errorMessage = + error?.response?.data?.username?.[0] || + error?.response?.data?.non_field_errors?.[0] || + "Failed to share this folder."; + throw new Error(errorMessage); } } }; @@ -148,20 +180,41 @@ export const useFolderOperations = ( inputValue: string, additionalValues?: AdditionalValues, ) => { - if (modalInfo.type === "group") { - const client = ChrisAPIClient.getClient(); - await client.adminCreateGroup({ name: inputValue }); - // Todo: Error Handling - } else if (modalInfo.type === "folder") { - await createFolder(inputValue); - } else if (modalInfo.type === "share") { - await shareFolder(inputValue, additionalValues); + switch (modalState.type) { + case "group": { + const client = ChrisAPIClient.getClient(); + await client.adminCreateGroup({ name: inputValue }); + break; + } + + case "folder": + await createFolder(inputValue); + break; + + case "share": + await shareFolder(inputValue, additionalValues); + break; + + case "createFeedWithFile": { + const { event, type } = + modalState.additionalProps?.createFeedWithFile || {}; + if (type === "file") { + handleFileChange(event, inputValue); + } else if (type === "folder") { + handleFolderChange(event, inputValue); + } + break; + } + + default: + break; } - setModalInfo({ isOpen: false, type: "" }); + + setModalState({ isOpen: false, type: "" }); }; const handleModalSubmitMutation = useMutation({ - mutationFn: ({ + mutationFn: async ({ inputValue, additionalValues, }: { @@ -178,8 +231,8 @@ export const useFolderOperations = ( handleDuplicateMutation.mutate(); }; - const handleOperations = (key: string) => { - switch (key) { + const handleOperations = (operationKey: string) => { + switch (operationKey) { case "createFeed": { const paths = selectedPaths.map((payload) => payload.path); router.actions.createFeedWithData(paths); @@ -190,16 +243,11 @@ export const useFolderOperations = ( handleOrigin(origin); dispatch(setToggleCart()); dispatch( - startDownload({ - paths: selectedPaths, - username: username as string, - }), + startDownload({ paths: selectedPaths, username: username as string }), ); - // Invalidate the folders after a time limit. This is poorly designed, as this part of the UI assumes - // that a feed will be created within a certain time frame. Mixing Redux and React Query isn't effective. - // A better design needs to be considered. invalidateQueries(); break; + case "anonymize": handleOrigin(origin); dispatch(setToggleCart()); @@ -210,48 +258,56 @@ export const useFolderOperations = ( }), ); break; + case "delete": deleteMutation.mutate(selectedPaths); break; + case "newFolder": - setModalInfo({ isOpen: true, type: "folder" }); + setModalState({ isOpen: true, type: "folder" }); break; + case "fileUpload": - fileInput.current?.click(); + fileInputRef.current?.click(); break; + case "folderUpload": - folderInput.current?.click(); + folderInputRef.current?.click(); break; + case "createGroup": - setModalInfo({ isOpen: true, type: "group" }); + setModalState({ isOpen: true, type: "group" }); break; - case "merge": { + + case "merge": handleMerge(); break; - } - case "share": { - setModalInfo({ isOpen: true, type: "share" }); + + case "share": + setModalState({ isOpen: true, type: "share" }); break; - } - case "duplicate": { + case "duplicate": handleDuplicate(); break; - } + + default: + break; } }; return { - modalInfo, - userError, - folderInput, - fileInput, + modalState, + userRelatedError, + folderInputRef, + fileInputRef, handleFileChange, + createFeedWithFile, handleFolderChange, handleModalSubmitMutation, handleOperations, - contextHolder, - setUserErrors, - setModalInfo, + contextHolder: notificationContextHolder, + setUserRelatedError, + setModalState, }; }; diff --git a/src/store/cart/types.ts b/src/store/cart/types.ts index 99938ce6c..732472710 100644 --- a/src/store/cart/types.ts +++ b/src/store/cart/types.ts @@ -79,6 +79,7 @@ export interface UploadPayload { currentPath: string; invalidateFunc: () => void; createFeed?: boolean; + nameForFeed?: string; } export type OperationPayload = { From d676e85d7f30da3e30eec99bfb83eba41c96ff10 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 4 Sep 2024 15:12:26 -0400 Subject: [PATCH 163/337] feat: Create Feed for file and folder uploads in the Feed Table --- .../NewLibrary/components/ContextMenu.tsx | 30 +- .../NewLibrary/components/Operations.tsx | 292 ++++++++---------- .../NewLibrary/utils/useOperations.tsx | 16 +- src/store/cart/uploadSaga.ts | 66 ++-- 4 files changed, 188 insertions(+), 216 deletions(-) diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index b18df166a..f77e74da9 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -1,5 +1,6 @@ import type { FileBrowserFolderList } from "@fnndsc/chrisapi"; import type { DefaultError } from "@tanstack/react-query"; +import { matchPath } from "react-router"; import { Alert, Dropdown, type MenuProps } from "../../Antd"; import { ArchiveIcon, @@ -35,7 +36,7 @@ export const FolderContextMenu = (props: ContextMenuProps) => { origin, computedPath, folderList, - location.pathname === "/feeds", + matchPath({ path: "/feeds", end: true }, location.pathname) !== null, // This checks if the path matches and returns true or false ); const items: MenuProps["items"] = [ @@ -49,33 +50,10 @@ export const FolderContextMenu = (props: ContextMenuProps) => { { key: "delete", label: "Delete", icon: <DeleteIcon /> }, ]; - const modalTypeLabels: Record< - string, - { modalTitle: string; inputLabel: string } - > = { - group: { - modalTitle: "Create a new Group", - inputLabel: "Group Name", - }, - share: { - modalTitle: "Share this Folder", - inputLabel: "User Name", - }, - - default: { - modalTitle: "Create a new Folder", - inputLabel: "Folder Name", - }, - }; - - const { modalTitle, inputLabel } = - modalTypeLabels[modalState.type] || modalTypeLabels.default; - return ( <> <AddModal - operationType={modalState.type} - isOpen={modalState.isOpen} + modalState={modalState} onClose={() => setModalState({ isOpen: false, type: "" })} onSubmit={(inputValue, additionalValues) => handleModalSubmitMutation.mutate({ @@ -83,8 +61,6 @@ export const FolderContextMenu = (props: ContextMenuProps) => { additionalValues, }) } - modalTitle={modalTitle} - inputLabel={inputLabel} indicators={{ isPending: handleModalSubmitMutation.isPending, isError: handleModalSubmitMutation.isError, diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index b9a805b79..33bc61667 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -7,6 +7,8 @@ import { ChipGroup, Form, FormGroup, + HelperText, + HelperTextItem, Modal, TextInput, Toolbar, @@ -15,14 +17,13 @@ import { Tooltip, } from "@patternfly/react-core"; import type { DefaultError } from "@tanstack/react-query"; -import type React from "react"; import { Fragment, useEffect, useMemo, useState } from "react"; import { useDispatch } from "react-redux"; import { matchPath, useLocation } from "react-router"; import { getFileName } from "../../../api/common"; import { removeSelectedPayload } from "../../../store/cart/cartSlice"; import { useTypedSelector } from "../../../store/hooks"; -import { Alert, Dropdown, Spin } from "../../Antd"; +import { Alert, Dropdown } from "../../Antd"; import { AddIcon, ArchiveIcon, @@ -34,7 +35,7 @@ import { ShareIcon, } from "../../Icons"; import type { OriginState } from "../context"; -import { useFolderOperations } from "../utils/useOperations"; +import { type ModalState, useFolderOperations } from "../utils/useOperations"; import LayoutSwitch from "./LayoutSwitch"; import "./Operations.css"; @@ -57,17 +58,22 @@ interface OperationProps { }; } -const items = [ +const OPERATION_ITEMS = [ { key: "newFolder", label: "New Folder" }, { key: "fileUpload", label: "File Upload" }, { key: "folderUpload", label: "Folder Upload" }, ]; -const Operations = (props: OperationProps) => { +const Operations = ({ + origin, + computedPath, + folderList, + customStyle, + customClassName, +}: OperationProps) => { const location = useLocation(); - const { origin, computedPath, folderList, customStyle, customClassName } = - props; const dispatch = useDispatch(); + const { modalState, userRelatedError, @@ -85,10 +91,10 @@ const Operations = (props: OperationProps) => { origin, computedPath, folderList, - location.pathname === "/feeds", + matchPath({ path: "/feeds", end: true }, location.pathname) !== null, // This checks if the path matches and returns true or false ); - const { selectedPaths } = useTypedSelector((state) => state.cart); + const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const selectedPathsCount = selectedPaths.length; const renderOperationButton = ( @@ -114,11 +120,9 @@ const Operations = (props: OperationProps) => { <ToolbarItem> <Dropdown menu={{ - items, + items: OPERATION_ITEMS, selectable: true, - onClick: (info) => { - handleOperations(info.key); - }, + onClick: (info) => handleOperations(info.key), }} > <Button @@ -144,55 +148,41 @@ const Operations = (props: OperationProps) => { </ToolbarItem> {selectedPathsCount > 0 && ( <> - <ToolbarItem> - {renderOperationButton( - <CodeBranchIcon />, - "createFeed", - "Create a new feed", - )} - </ToolbarItem> - <ToolbarItem> - {renderOperationButton( - <DownloadIcon />, - "download", - "Download selected items", - )} - </ToolbarItem> - <ToolbarItem> - {renderOperationButton( - <ArchiveIcon />, - "anonymize", - "Anonymize selected items", - )} - </ToolbarItem> - <ToolbarItem> - {renderOperationButton( - <MergeIcon />, - "merge", - "Merge selected items", - )} - </ToolbarItem> - <ToolbarItem> - {renderOperationButton( - <DuplicateIcon />, - "duplicate", - "Copy selected items", - )} - </ToolbarItem> - <ToolbarItem> - {renderOperationButton( - <ShareIcon />, - "share", - "Share selected items", - )} - </ToolbarItem> - <ToolbarItem> - {renderOperationButton( - <DeleteIcon />, - "delete", - "Delete selected items", - )} - </ToolbarItem> + {renderOperationButton( + <CodeBranchIcon />, + "createFeed", + "Create a new feed", + )} + {renderOperationButton( + <DownloadIcon />, + "download", + "Download selected items", + )} + {renderOperationButton( + <ArchiveIcon />, + "anonymize", + "Anonymize selected items", + )} + {renderOperationButton( + <MergeIcon />, + "merge", + "Merge selected items", + )} + {renderOperationButton( + <DuplicateIcon />, + "duplicate", + "Copy selected items", + )} + {renderOperationButton( + <ShareIcon />, + "share", + "Share selected items", + )} + {renderOperationButton( + <DeleteIcon />, + "delete", + "Delete selected items", + )} <ToolbarItem> <ChipGroup> {selectedPaths.map((selection) => ( @@ -223,22 +213,10 @@ const Operations = (props: OperationProps) => { return ( <> <AddModal - operationType={modalState.type} - isOpen={modalState.isOpen} + modalState={modalState} onClose={() => setModalState({ isOpen: false, type: "" })} onSubmit={(inputValue, additionalValues) => - handleModalSubmitMutation.mutate({ - inputValue, - additionalValues, - }) - } - modalTitle={ - modalTypeLabels[modalState.type]?.modalTitle ?? - modalTypeLabels.default.modalTitle - } - inputLabel={ - modalTypeLabels[modalState.type]?.inputLabel ?? - modalTypeLabels.default.inputLabel + handleModalSubmitMutation.mutate({ inputValue, additionalValues }) } indicators={{ isPending: handleModalSubmitMutation.isPending, @@ -249,7 +227,7 @@ const Operations = (props: OperationProps) => { /> <input ref={fileInputRef} - multiple={true} + multiple type="file" hidden onChange={(e) => { @@ -263,10 +241,10 @@ const Operations = (props: OperationProps) => { <input ref={folderInputRef} type="file" + hidden //@ts-ignore webkitdirectory="" directory="" - hidden onChange={(e) => { if (matchPath({ path: "/feeds", end: true }, location.pathname)) { createFeedWithFile(e, "folder"); @@ -276,17 +254,13 @@ const Operations = (props: OperationProps) => { }} /> <Toolbar - style={{ ...customStyle?.toolbar }} + style={customStyle?.toolbar} className={customClassName?.toolbar} > - <ToolbarContent style={{ ...customStyle?.toolbarItem }}> + <ToolbarContent style={customStyle?.toolbarItem}> {toolbarItems} {location.pathname.startsWith("/library/") && ( - <ToolbarItem - align={{ - default: "alignRight", - }} - > + <ToolbarItem align={{ default: "alignRight" }}> <LayoutSwitch /> </ToolbarItem> )} @@ -298,7 +272,7 @@ const Operations = (props: OperationProps) => { export default Operations; -const modalTypeLabels: Record< +const MODAL_TYPE_LABELS: Record< string, { modalTitle: string; inputLabel: string } > = { @@ -314,7 +288,6 @@ const modalTypeLabels: Record< modalTitle: "Create Feed", inputLabel: "Feed Name", }, - default: { modalTitle: "Create a new Folder", inputLabel: "Folder Name", @@ -322,56 +295,53 @@ const modalTypeLabels: Record< }; interface AddModalProps { - operationType: string; - isOpen: boolean; + modalState: ModalState; onClose: () => void; onSubmit: (inputValue: string, additionalValues?: AdditionalValues) => void; - modalTitle: string; - inputLabel: string; indicators: { isPending: boolean; isError: boolean; error: DefaultError | null; clearErrors: () => void; }; - additionalValues?: { - [key: string]: any; - }; } -export const AddModal = (props: AddModalProps) => { - const { - isOpen, - onClose, - onSubmit, - modalTitle, - inputLabel, - indicators, - operationType, - } = props; +export const AddModal = ({ + modalState, + onClose, + onSubmit, + indicators, +}: AddModalProps) => { const [inputValue, setInputValue] = useState(""); const [additionalValues, setAdditionalValues] = useState<AdditionalValues>({ - share: { - read: false, - write: true, - }, + share: { read: false, write: true }, }); + const { modalTitle, inputLabel } = useMemo(() => { + const modalType = + MODAL_TYPE_LABELS[modalState.type] ?? MODAL_TYPE_LABELS.default; + return { + modalTitle: modalType.modalTitle, + inputLabel: modalType.inputLabel, + }; + }, [modalState.type]); + + useEffect(() => { + if (modalState.additionalProps?.createFeedWithFile) { + setInputValue( + modalState.additionalProps.createFeedWithFile.defaultFeedName, + ); + } + }, [modalState.type]); + const handleClose = () => { setInputValue(""); onClose(); }; - useEffect(() => { - async function fetchUsers() {} - if (modalTitle === "Share this Folder") { - fetchUsers(); - } - }, [modalTitle]); - return ( <Modal - isOpen={isOpen} + isOpen={modalState.isOpen} variant="small" aria-label={modalTitle} title={modalTitle} @@ -392,57 +362,61 @@ export const AddModal = (props: AddModalProps) => { aria-label={inputLabel} placeholder={inputLabel} /> + {modalState.type === "createFeedWithFile" && ( + <HelperText> + <HelperTextItem> + You can create a Feed by uploading a file. + </HelperTextItem> + </HelperText> + )} </FormGroup> - {operationType === "share" && ( - <FormGroup> - <Checkbox - id="read" - isChecked={additionalValues?.share.read} - label="Read" - onChange={(_event, checked) => { - setAdditionalValues({ - ...additionalValues, - share: { - ...additionalValues?.share, - read: checked, - }, - }); - }} - /> - <Checkbox - id="write" - isChecked={additionalValues?.share.write} - label="Write" - onChange={(_event, checked) => { - setAdditionalValues({ - ...additionalValues, - share: { - ...additionalValues?.share, - write: checked, - }, - }); - }} - /> - </FormGroup> + {modalState.type === "share" && ( + <Fragment> + <FormGroup fieldId="share-checkbox-group"> + <Checkbox + label="Read" + id="share-checkbox-1" + isChecked={additionalValues.share.read} + onChange={(_e, checked) => + setAdditionalValues((prevState) => ({ + share: { ...prevState.share, read: checked }, + })) + } + /> + <Checkbox + label="Write" + id="share-checkbox-2" + isChecked={additionalValues.share.write} + onChange={(_e, checked) => + setAdditionalValues((prevState) => ({ + share: { ...prevState.share, write: checked }, + })) + } + /> + </FormGroup> + </Fragment> )} - - <ActionGroup> - <Button - icon={indicators.isPending && <Spin />} - onClick={() => onSubmit(inputValue)} - > - Confirm - </Button> - <Button onClick={handleClose}>Cancel</Button> - </ActionGroup> {indicators.isError && ( <Alert - type="error" + message="Failed to create a new folder" description={indicators.error?.message} + type="error" + showIcon closable - onClose={indicators.clearErrors} + afterClose={() => indicators.clearErrors()} /> )} + <ActionGroup> + <Button + onClick={() => onSubmit(inputValue, additionalValues)} + isLoading={indicators.isPending} + > + Create + </Button> + <Button variant="link" onClick={handleClose}> + Cancel + </Button> + </ActionGroup> </Form> </Modal> ); diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index 018c59848..a0a789db2 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -17,7 +17,7 @@ import { type OriginState, useOperationsContext } from "../context"; import useDeletePayload from "../utils/useDeletePayload"; import useFeedOperations from "./useFeedOperations"; -interface ModalState { +export interface ModalState { type: string; isOpen: boolean; additionalProps?: Record<string, any>; @@ -48,7 +48,7 @@ export const useFolderOperations = ( const username = useTypedSelector((state) => state.user.username); const [modalState, setModalState] = useState<ModalState>({ isOpen: false, - type: "", + type: "folder", }); const [userRelatedError, setUserRelatedError] = useState<string>(""); const dispatch = useDispatch(); @@ -139,6 +139,17 @@ export const useFolderOperations = ( event: React.ChangeEvent<HTMLInputElement>, type: string, ) => { + let defaultFeedName = ""; + const files = Array.from(event.target.files || []); + if (type === "folder") { + const name = files[0].webkitRelativePath; + const fileName = name.split("/")[0]; + defaultFeedName = `Feed for ${fileName}`; + } else { + defaultFeedName = + files.length < 2 ? `Feed for ${files[0].name}` : "Multiple File Upload"; + } + setModalState({ type: "createFeedWithFile", isOpen: true, @@ -146,6 +157,7 @@ export const useFolderOperations = ( createFeedWithFile: { event, type, + defaultFeedName: defaultFeedName, }, }, }); diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index 2afcce035..c460be0f2 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -76,6 +76,7 @@ function* uploadFileBatch( batchSize: number, invalidateFunc: () => void, shouldCreateFeed?: boolean, + nameForFeed?: string, ) { const url = `${import.meta.env.VITE_CHRIS_UI_URL}userfiles/`; const firstBatch = files.slice(0, 1); // First batch with 1 file @@ -83,6 +84,7 @@ function* uploadFileBatch( const batches = [firstBatch, ...remainingBatches]; const totalFiles = files.length; let uploadedFilesCount = 0; + let uploadFileCountForFeed = 0; let cancelledUploads = false; let errorOccurred = false; let lastError = ""; @@ -165,6 +167,10 @@ function* uploadFileBatch( ); } + if (response && !error) { + uploadFileCountForFeed += 1; + } + if (response || error) { break; } @@ -188,6 +194,34 @@ function* uploadFileBatch( folderController, invalidateFunc, shouldCreateFeed, + nameForFeed, + ); + } + } + + if ( + !isFolder && + shouldCreateFeed && + uploadFileCountForFeed === files.length + ) { + // This creates a feed for multiple file uploads + try { + yield call( + createFeed, + [currentPath], + nameForFeed ? nameForFeed : "", + invalidateFunc, + ); + } catch (e) { + yield put( + setFileUploadStatus({ + step: "Error: Failed to create a feed", + fileName: nameForFeed as string, + progress: 0, + controller: null, + path: currentPath, + type: "file", + }), ); } } @@ -201,6 +235,7 @@ function* handleUpload(action: IActionTypeParam) { currentPath, createFeed, invalidateFunc, + nameForFeed, }: UploadPayload = action.payload; const client = ChrisAPIClient.getClient(); const batchSize = files.length > 500 ? 100 : 50; // Adjust the batch size as needed @@ -214,6 +249,7 @@ function* handleUpload(action: IActionTypeParam) { batchSize, invalidateFunc, createFeed, + nameForFeed, ); } @@ -323,28 +359,6 @@ function* updateFileUploadStatus( type: "file", }), ); - - if (isDone && response && shouldCreateFeed) { - try { - yield call( - createFeed, - [currentPath], - `Library upload for ${name}`, - invalidateFunc, - ); - } catch (e) { - yield put( - setFileUploadStatus({ - step: "Error: Failed to create a feed", - fileName: name, - progress, - controller: null, - path: currentPath, - type: "file", - }), - ); - } - } } function* updateFolderUploadStatus( @@ -355,6 +369,7 @@ function* updateFolderUploadStatus( controller: AbortController, invalidateFunc: () => void, shouldCreateFeed?: boolean, + nameForFeed?: string, ) { const name = file.webkitRelativePath; const fileName = name.split("/")[0]; @@ -362,12 +377,7 @@ function* updateFolderUploadStatus( const uploadDone = uploadedFilesCount === totalFiles; try { if (uploadDone && shouldCreateFeed) { - yield call( - createFeed, - [path], - `Library upload for ${fileName}`, - invalidateFunc, - ); + yield call(createFeed, [path], nameForFeed as string, invalidateFunc); } //invalidate the ui page if the upload is complete uploadDone && !shouldCreateFeed && invalidateFunc(); From 1ec04f0b7de9ec5636f60b823f5caa12ce5ba6cb Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 4 Sep 2024 16:48:38 -0400 Subject: [PATCH 164/337] feat: Rename a Feed --- .../NewLibrary/components/ContextMenu.tsx | 3 +- .../NewLibrary/components/Operations.tsx | 22 +- src/components/NewLibrary/utils/longpress.tsx | 15 ++ .../NewLibrary/utils/useOperations.tsx | 222 +++++++----------- 4 files changed, 126 insertions(+), 136 deletions(-) diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index f77e74da9..b59c732bf 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -8,6 +8,7 @@ import { DeleteIcon, DownloadIcon, DuplicateIcon, + EditIcon, MergeIcon, ShareIcon, } from "../../Icons"; @@ -46,7 +47,7 @@ export const FolderContextMenu = (props: ContextMenuProps) => { { key: "merge", label: "Merge", icon: <MergeIcon /> }, { key: "duplicate", label: "Copy", icon: <DuplicateIcon /> }, { key: "share", label: "Share", icon: <ShareIcon /> }, - + { key: "rename", label: "Rename", icon: <EditIcon /> }, { key: "delete", label: "Delete", icon: <DeleteIcon /> }, ]; diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 33bc61667..604b9416f 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -31,6 +31,7 @@ import { DeleteIcon, DownloadIcon, DuplicateIcon, + EditIcon, MergeIcon, ShareIcon, } from "../../Icons"; @@ -178,6 +179,8 @@ const Operations = ({ "share", "Share selected items", )} + + {renderOperationButton(<EditIcon />, "rename", "Rename")} {renderOperationButton( <DeleteIcon />, "delete", @@ -274,23 +277,32 @@ export default Operations; const MODAL_TYPE_LABELS: Record< string, - { modalTitle: string; inputLabel: string } + { modalTitle: string; inputLabel: string; buttonLabel: string } > = { group: { modalTitle: "Create a new Group", inputLabel: "Group Name", + buttonLabel: "Create", }, share: { modalTitle: "Share this Folder", inputLabel: "User Name", + buttonLabel: "Share", + }, + rename: { + modalTitle: "Rename", + inputLabel: "Rename", + buttonLabel: "Rename", }, createFeedWithFile: { modalTitle: "Create Feed", inputLabel: "Feed Name", + buttonLabel: "Create", }, default: { modalTitle: "Create a new Folder", inputLabel: "Folder Name", + buttonLabel: "Create", }, }; @@ -317,12 +329,13 @@ export const AddModal = ({ share: { read: false, write: true }, }); - const { modalTitle, inputLabel } = useMemo(() => { + const { modalTitle, inputLabel, buttonLabel } = useMemo(() => { const modalType = MODAL_TYPE_LABELS[modalState.type] ?? MODAL_TYPE_LABELS.default; return { modalTitle: modalType.modalTitle, inputLabel: modalType.inputLabel, + buttonLabel: modalType.buttonLabel, }; }, [modalState.type]); @@ -365,7 +378,8 @@ export const AddModal = ({ {modalState.type === "createFeedWithFile" && ( <HelperText> <HelperTextItem> - You can create a Feed by uploading a file. + Please provide a name for your feed or hit 'Create' to use the + default name </HelperTextItem> </HelperText> )} @@ -411,7 +425,7 @@ export const AddModal = ({ onClick={() => onSubmit(inputValue, additionalValues)} isLoading={indicators.isPending} > - Create + {buttonLabel} </Button> <Button variant="link" onClick={handleClose}> Cancel diff --git a/src/components/NewLibrary/utils/longpress.tsx b/src/components/NewLibrary/utils/longpress.tsx index 1a202cbeb..6498db781 100644 --- a/src/components/NewLibrary/utils/longpress.tsx +++ b/src/components/NewLibrary/utils/longpress.tsx @@ -1,4 +1,5 @@ import type { + Feed, FileBrowserFolder, FileBrowserFolderFile, FileBrowserFolderLinkFile, @@ -7,6 +8,7 @@ import { Button, Tooltip } from "@patternfly/react-core"; import { useRef, useState } from "react"; import { useDispatch } from "react-redux"; import { useNavigate } from "react-router"; +import ChrisAPIClient from "../../../api/chrisapiclient"; import { clearSelectedPaths, setSelectedPaths, @@ -207,3 +209,16 @@ export function ShowInFolder({ </Tooltip> ); } + +export const fetchFeedForPath = async (path: string): Promise<Feed | null> => { + const feedMatches = path.match(/feed_(\d+)/); + const id = feedMatches ? feedMatches[1] : null; + + if (id) { + const client = ChrisAPIClient.getClient(); + const feed: Feed = (await client.getFeed(Number(id))) as Feed; + if (!feed) throw new Error("Failed to fetch the feed"); + return feed; + } + return null; +}; diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index a0a789db2..ad8676e55 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -1,7 +1,10 @@ -import type { FileBrowserFolderList } from "@fnndsc/chrisapi"; -import { useMutation } from "@tanstack/react-query"; import { useContext, useRef, useState } from "react"; import { useDispatch } from "react-redux"; +import { useMutation } from "@tanstack/react-query"; +import type { + FileBrowserFolder, + FileBrowserFolderList, +} from "@fnndsc/chrisapi"; import ChrisAPIClient from "../../../api/chrisapiclient"; import { MainRouterContext } from "../../../routes"; import { @@ -13,9 +16,12 @@ import { import { useTypedSelector } from "../../../store/hooks"; import { notification } from "../../Antd"; import type { AdditionalValues } from "../components/Operations"; -import { type OriginState, useOperationsContext } from "../context"; +import { useOperationsContext, type OriginState } from "../context"; import useDeletePayload from "../utils/useDeletePayload"; import useFeedOperations from "./useFeedOperations"; +import { catchError } from "../../../api/common"; +import { getFolderName } from "../components/FolderCard"; +import { fetchFeedForPath } from "./longpress"; export interface ModalState { type: string; @@ -23,8 +29,8 @@ export interface ModalState { additionalProps?: Record<string, any>; } -export const getCurrentTimestamp = () => { - return new Date() +export const getCurrentTimestamp = () => + new Date() .toLocaleString("en-US", { year: "numeric", month: "short", @@ -34,7 +40,6 @@ export const getCurrentTimestamp = () => { hour12: true, }) .replace(/[^a-zA-Z0-9]/g, "_"); -}; export const useFolderOperations = ( origin: OriginState, @@ -45,15 +50,18 @@ export const useFolderOperations = ( const { handleOrigin, invalidateQueries } = useOperationsContext(); const router = useContext(MainRouterContext); const { selectedPaths } = useTypedSelector((state) => state.cart); - const username = useTypedSelector((state) => state.user.username); + const username = useTypedSelector((state) => state.user.username) as string; + const dispatch = useDispatch(); + const [modalState, setModalState] = useState<ModalState>({ isOpen: false, type: "folder", }); const [userRelatedError, setUserRelatedError] = useState<string>(""); - const dispatch = useDispatch(); + const folderInputRef = useRef<HTMLInputElement>(null); const fileInputRef = useRef<HTMLInputElement>(null); + const [notificationAPI, notificationContextHolder] = notification.useNotification(); @@ -64,13 +72,12 @@ export const useFolderOperations = ( ); const resetInputField = (inputRef: React.RefObject<HTMLInputElement>) => { - if (inputRef.current) { - inputRef.current.value = ""; - } + if (inputRef.current) inputRef.current.value = ""; }; - const handleFileChange = async ( + const handleUpload = async ( event: React.ChangeEvent<HTMLInputElement>, + isFolder: boolean, name?: string, ) => { handleOrigin(origin); @@ -85,40 +92,15 @@ export const useFolderOperations = ( dispatch( startUpload({ files, - isFolder: false, + isFolder, currentPath: uploadPath as string, invalidateFunc: invalidateQueries, createFeed, nameForFeed: name, }), ); - resetInputField(fileInputRef); - }; - - const handleFolderChange = async ( - event: React.ChangeEvent<HTMLInputElement>, - name?: string, - ) => { - handleOrigin(origin); - const files = Array.from(event.target.files || []); - const uniqueName = name - ? `${name}_${getCurrentTimestamp()}` - : getCurrentTimestamp(); - const uploadPath = createFeed - ? `home/${username}/uploads/${uniqueName}` - : computedPath; - dispatch( - startUpload({ - files, - isFolder: true, - currentPath: uploadPath as string, - invalidateFunc: invalidateQueries, - createFeed, - nameForFeed: name, - }), - ); - resetInputField(folderInputRef); + resetInputField(isFolder ? folderInputRef : fileInputRef); }; const createFolder = async (folderName: string) => { @@ -139,32 +121,25 @@ export const useFolderOperations = ( event: React.ChangeEvent<HTMLInputElement>, type: string, ) => { - let defaultFeedName = ""; const files = Array.from(event.target.files || []); - if (type === "folder") { - const name = files[0].webkitRelativePath; - const fileName = name.split("/")[0]; - defaultFeedName = `Feed for ${fileName}`; - } else { - defaultFeedName = - files.length < 2 ? `Feed for ${files[0].name}` : "Multiple File Upload"; - } + const defaultFeedName = + type === "folder" + ? `Feed for ${files[0].webkitRelativePath.split("/")[0]}` + : files.length < 2 + ? `Feed for ${files[0].name}` + : "Multiple File Upload"; setModalState({ type: "createFeedWithFile", isOpen: true, additionalProps: { - createFeedWithFile: { - event, - type, - defaultFeedName: defaultFeedName, - }, + createFeedWithFile: { event, type, defaultFeedName }, }, }); }; const shareFolder = async ( - username: string, + targetUsername: string, additionalValues?: AdditionalValues, ) => { const permissions = @@ -174,10 +149,9 @@ export const useFolderOperations = ( ? "r" : "w"; - for (const selectedItem of selectedPaths) { - const { payload } = selectedItem; + for (const { payload } of selectedPaths) { try { - await payload.addUserPermission(username, permissions); + await payload.addUserPermission(targetUsername, permissions); } catch (error: any) { const errorMessage = error?.response?.data?.username?.[0] || @@ -188,6 +162,32 @@ export const useFolderOperations = ( } }; + const renameFolder = async (inputValue: string) => { + handleOrigin(origin); + if (createFeed) { + // Renaming a feed + for (const { payload } of selectedPaths) { + try { + // This code is temporary + const fileName = getFolderName( + payload as FileBrowserFolder, + payload.data.path, + ); + const feed = await fetchFeedForPath(fileName); + if (feed) { + await feed.put({ + name: inputValue, + }); + } + } catch (error: any) { + const error_message = catchError(error).error_message; + throw new Error(error_message); + } + } + invalidateQueries(); + } + }; + const handleModalSubmit = async ( inputValue: string, additionalValues?: AdditionalValues, @@ -198,26 +198,24 @@ export const useFolderOperations = ( await client.adminCreateGroup({ name: inputValue }); break; } - case "folder": await createFolder(inputValue); break; - case "share": await shareFolder(inputValue, additionalValues); break; + case "rename": { + await renameFolder(inputValue); + break; + } + case "createFeedWithFile": { const { event, type } = modalState.additionalProps?.createFeedWithFile || {}; - if (type === "file") { - handleFileChange(event, inputValue); - } else if (type === "folder") { - handleFolderChange(event, inputValue); - } + await handleUpload(event, type === "folder", inputValue); break; } - default: break; } @@ -235,77 +233,35 @@ export const useFolderOperations = ( }) => handleModalSubmit(inputValue, additionalValues), }); - const handleMerge = () => { - handleMergeMutation.mutate(); - }; - - const handleDuplicate = () => { - handleDuplicateMutation.mutate(); - }; - const handleOperations = (operationKey: string) => { - switch (operationKey) { - case "createFeed": { - const paths = selectedPaths.map((payload) => payload.path); + const operationsMap: Record<string, () => void> = { + createFeed: () => { + const paths = selectedPaths.map(({ path }) => path); router.actions.createFeedWithData(paths); - break; - } - - case "download": + }, + download: () => { handleOrigin(origin); dispatch(setToggleCart()); - dispatch( - startDownload({ paths: selectedPaths, username: username as string }), - ); + dispatch(startDownload({ paths: selectedPaths, username: username })); invalidateQueries(); - break; - - case "anonymize": + }, + anonymize: () => { handleOrigin(origin); dispatch(setToggleCart()); - dispatch( - startAnonymize({ - paths: selectedPaths, - username: username as string, - }), - ); - break; - - case "delete": - deleteMutation.mutate(selectedPaths); - break; - - case "newFolder": - setModalState({ isOpen: true, type: "folder" }); - break; - - case "fileUpload": - fileInputRef.current?.click(); - break; - - case "folderUpload": - folderInputRef.current?.click(); - break; - - case "createGroup": - setModalState({ isOpen: true, type: "group" }); - break; - - case "merge": - handleMerge(); - break; - - case "share": - setModalState({ isOpen: true, type: "share" }); - break; - - case "duplicate": - handleDuplicate(); - break; - - default: - break; - } + dispatch(startAnonymize({ paths: selectedPaths, username })); + }, + delete: () => deleteMutation.mutate(selectedPaths), + newFolder: () => setModalState({ isOpen: true, type: "folder" }), + fileUpload: () => fileInputRef.current?.click(), + folderUpload: () => folderInputRef.current?.click(), + createGroup: () => setModalState({ isOpen: true, type: "group" }), + merge: handleMergeMutation.mutate, + share: () => setModalState({ isOpen: true, type: "share" }), + rename: () => setModalState({ isOpen: true, type: "rename" }), + duplicate: handleDuplicateMutation.mutate, + }; + + operationsMap[operationKey]?.(); }; return { @@ -313,9 +269,13 @@ export const useFolderOperations = ( userRelatedError, folderInputRef, fileInputRef, - handleFileChange, + handleFileChange: (e: React.ChangeEvent<HTMLInputElement>, name?: string) => + handleUpload(e, false, name), createFeedWithFile, - handleFolderChange, + handleFolderChange: ( + e: React.ChangeEvent<HTMLInputElement>, + name?: string, + ) => handleUpload(e, true, name), handleModalSubmitMutation, handleOperations, contextHolder: notificationContextHolder, From fb5dd4026c9470e431b13c0551dae0e5359c2737 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 4 Sep 2024 17:09:42 -0400 Subject: [PATCH 165/337] feat: Do not allow empty values in the Operation Modal --- src/components/NewLibrary/components/Operations.tsx | 1 + 1 file changed, 1 insertion(+) diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 604b9416f..f9a381959 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -424,6 +424,7 @@ export const AddModal = ({ <Button onClick={() => onSubmit(inputValue, additionalValues)} isLoading={indicators.isPending} + isDisabled={!inputValue} > {buttonLabel} </Button> From 1f9379dfaa2bd94b7e4fe95cef417f0a6409b26b Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 5 Sep 2024 10:34:10 -0400 Subject: [PATCH 166/337] feat: Disable rename for library and file browser table --- .../NewLibrary/components/ContextMenu.tsx | 16 +++++++++------- .../NewLibrary/components/Operations.tsx | 11 +++++------ src/store/cart/downloadSaga.ts | 2 +- src/store/cart/uploadSaga.ts | 2 +- 4 files changed, 16 insertions(+), 15 deletions(-) diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index b59c732bf..c8cbbf61e 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -25,6 +25,8 @@ interface ContextMenuProps { export const FolderContextMenu = (props: ContextMenuProps) => { const { children, origin, folderList, computedPath } = props; + const isFeedsTable = + matchPath({ path: "/feeds", end: true }, location.pathname) !== null; // This checks if the path matches and returns true or false const { modalState, userRelatedError, @@ -33,12 +35,7 @@ export const FolderContextMenu = (props: ContextMenuProps) => { contextHolder, setUserRelatedError, setModalState, - } = useFolderOperations( - origin, - computedPath, - folderList, - matchPath({ path: "/feeds", end: true }, location.pathname) !== null, // This checks if the path matches and returns true or false - ); + } = useFolderOperations(origin, computedPath, folderList, isFeedsTable); const items: MenuProps["items"] = [ { key: "createFeed", label: "Create Feed", icon: <CodeBranchIcon /> }, @@ -47,7 +44,12 @@ export const FolderContextMenu = (props: ContextMenuProps) => { { key: "merge", label: "Merge", icon: <MergeIcon /> }, { key: "duplicate", label: "Copy", icon: <DuplicateIcon /> }, { key: "share", label: "Share", icon: <ShareIcon /> }, - { key: "rename", label: "Rename", icon: <EditIcon /> }, + { + key: "rename", + label: "Rename", + icon: <EditIcon />, + disabled: !isFeedsTable, + }, { key: "delete", label: "Delete", icon: <DeleteIcon /> }, ]; diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index f9a381959..d182c24c3 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -74,6 +74,8 @@ const Operations = ({ }: OperationProps) => { const location = useLocation(); const dispatch = useDispatch(); + const isFeedsTable = + matchPath({ path: "/feeds", end: true }, location.pathname) !== null; // This checks if the path matches and returns true or false const { modalState, @@ -88,12 +90,7 @@ const Operations = ({ contextHolder, setUserRelatedError, setModalState, - } = useFolderOperations( - origin, - computedPath, - folderList, - matchPath({ path: "/feeds", end: true }, location.pathname) !== null, // This checks if the path matches and returns true or false - ); + } = useFolderOperations(origin, computedPath, folderList, isFeedsTable); const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const selectedPathsCount = selectedPaths.length; @@ -105,11 +102,13 @@ const Operations = ({ ) => ( <Tooltip content={ariaLabel}> <Button + style={{ marginRight: "1em" }} icon={icon} size="sm" onClick={() => handleOperations(operationKey)} variant="tertiary" aria-label={ariaLabel} + isDisabled={operationKey === "rename" && !isFeedsTable} /> </Tooltip> ); diff --git a/src/store/cart/downloadSaga.ts b/src/store/cart/downloadSaga.ts index 5b28b2914..888066df2 100644 --- a/src/store/cart/downloadSaga.ts +++ b/src/store/cart/downloadSaga.ts @@ -20,8 +20,8 @@ import { downloadFile } from "../hooks"; import { setFileDownloadStatus, setFolderDownloadStatus, - startDownload, startAnonymize, + startDownload, } from "./cartSlice"; import { DownloadTypes, diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index c460be0f2..72ffd9aec 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -137,7 +137,7 @@ function* uploadFileBatch( errorOccurred = true; lastError = error; // Store the last error message - // We need to cancel the folder upload manually since it will upload other files in the list and they will all error out due to the path being invalid path + // We need to cancel the folder upload manually since it will upload other files in the list and they will all error out due to the path being an invalid path isFolder && folderController.abort(); if (!isFolder) { // No need to manually cancel the upload for a single file as the request will fail. From 57a333ed449a395ea76491e84fb53ad23554df89 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 5 Sep 2024 11:15:06 -0400 Subject: [PATCH 167/337] fix: Update the useOperations hook --- src/app.css | 4 ++-- src/components/Feeds/DrawerUtils.tsx | 2 +- src/components/NewLibrary/utils/useOperations.tsx | 2 ++ 3 files changed, 5 insertions(+), 3 deletions(-) diff --git a/src/app.css b/src/app.css index c4e62affd..c8b3c18aa 100644 --- a/src/app.css +++ b/src/app.css @@ -34,8 +34,8 @@ } ::-webkit-scrollbar { - width: 0.5rem; - height: 0.5rem; + width: 0.5em; + height: 0.5em; } ::-webkit-scrollbar-track { diff --git a/src/components/Feeds/DrawerUtils.tsx b/src/components/Feeds/DrawerUtils.tsx index 3d80be91b..4fe064108 100644 --- a/src/components/Feeds/DrawerUtils.tsx +++ b/src/components/Feeds/DrawerUtils.tsx @@ -86,7 +86,7 @@ export const DrawerActionButton = ({ /> ) : ( <Button - style={{ paddingLeft: "0.5em", paddingRight: "0.5em" }} + style={{ paddingLeft: "0.5em", paddingRight: "0.5em", zIndex: 999 }} onClick={handleMaximize} variant="link" icon={<ExpandArrowsAltIcon />} diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index ad8676e55..f57e24100 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -22,6 +22,7 @@ import useFeedOperations from "./useFeedOperations"; import { catchError } from "../../../api/common"; import { getFolderName } from "../components/FolderCard"; import { fetchFeedForPath } from "./longpress"; +import { create } from "lodash"; export interface ModalState { type: string; @@ -85,6 +86,7 @@ export const useFolderOperations = ( const uniqueName = name ? `${name}_${getCurrentTimestamp()}` : getCurrentTimestamp(); + const uploadPath = createFeed ? `home/${username}/uploads/${uniqueName}` : computedPath; From c6f0d57b15c3deeb6dede21b6dcf966fd000a54f Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 5 Sep 2024 11:58:33 -0400 Subject: [PATCH 168/337] feat: Update the store saga with a fix --- src/store/cart/uploadSaga.ts | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index 72ffd9aec..5aa096b64 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -373,14 +373,17 @@ function* updateFolderUploadStatus( ) { const name = file.webkitRelativePath; const fileName = name.split("/")[0]; - const path = `${currentPath}/${name}`; const uploadDone = uploadedFilesCount === totalFiles; try { if (uploadDone && shouldCreateFeed) { - yield call(createFeed, [path], nameForFeed as string, invalidateFunc); + yield call( + createFeed, + [`${currentPath}/${fileName}`], + nameForFeed as string, + invalidateFunc, + ); } //invalidate the ui page if the upload is complete - uploadDone && !shouldCreateFeed && invalidateFunc(); yield put( setFolderUploadStatus({ step: uploadDone ? "Upload Complete" : "Uploading...", @@ -392,6 +395,7 @@ function* updateFolderUploadStatus( type: "folder", }), ); + uploadDone && !shouldCreateFeed && invalidateFunc(); } catch (e) { yield put( setFolderUploadStatus({ From 89c1b96f08feb268dd47f70d72e48052afbef67b Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 5 Sep 2024 12:03:06 -0400 Subject: [PATCH 169/337] feat: Add a fixed width to the Newly Added Label to prevent layout shifts in the table --- .../NewLibrary/components/LibraryTable.tsx | 14 +++++++++----- 1 file changed, 9 insertions(+), 5 deletions(-) diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index c4eb53c47..c6f2ce1d2 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -175,11 +175,15 @@ const BaseRow: React.FC<RowProps> = ({ > {name} </Button> - {isNewResource && ( - <Tag style={{ marginLeft: "0.25em" }} color="#3E8635"> - Newly Added - </Tag> - )} + <span + style={{ + display: "inline-block", + width: "90px", + marginLeft: "0.25em", + }} + > + {isNewResource ? <Tag color="#3E8635">Newly Added</Tag> : null} + </span> </Td> <Td dataLabel={columnNames.date}> {format(new Date(date), "dd MMM yyyy, HH:mm")} From 0536e14ebbb4a33fbc552857970f0521902d5de3 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 5 Sep 2024 12:21:36 -0400 Subject: [PATCH 170/337] feat: Handle bad feed names in the Feed Table --- src/store/cart/downloadSaga.ts | 55 +++++++++++++++++++++------------- src/store/cart/uploadSaga.ts | 1 + 2 files changed, 35 insertions(+), 21 deletions(-) diff --git a/src/store/cart/downloadSaga.ts b/src/store/cart/downloadSaga.ts index 888066df2..91b490397 100644 --- a/src/store/cart/downloadSaga.ts +++ b/src/store/cart/downloadSaga.ts @@ -28,6 +28,7 @@ import { type PayloadTypes, type SelectionPayload, } from "./types"; +import { create } from "lodash"; export function* setStatus( type: string, @@ -53,29 +54,41 @@ export async function createFeed( feedName: string, invalidateFunc?: () => void, ) { - const client = ChrisAPIClient.getClient(); - const dircopy: Plugin | undefined = (await getPlugin("pl-dircopy")) as - | Plugin - | undefined; - if (!dircopy) { - throw new Error("pl-dircopy was not registered"); - } - const createdInstance: PluginInstance = (await client.createPluginInstance( - dircopy.data.id, - //@ts-ignore - { dir: path.length > 0 ? path.join(",") : path[0] }, - )) as PluginInstance; - if (!createdInstance) { - throw new Error("Failed to create an instance of pl-dircopy"); - } - const feed = (await createdInstance.getFeed()) as Feed; - if (!feed) { + let createdInstance: PluginInstance | null = null; + let feed: Feed | null = null; + try { + const client = ChrisAPIClient.getClient(); + const dircopy: Plugin | undefined = (await getPlugin("pl-dircopy")) as + | Plugin + | undefined; + if (!dircopy) { + throw new Error("pl-dircopy was not registered"); + } + createdInstance = (await client.createPluginInstance( + dircopy.data.id, + //@ts-ignore + { dir: path.length > 0 ? path.join(",") : path[0] }, + )) as PluginInstance; + if (!createdInstance) { + throw new Error("Failed to create an instance of pl-dircopy"); + } + feed = (await createdInstance.getFeed()) as Feed; + await feed.put({ name: feedName }); + //invalidate the ui page if the feed is created. Do this only if invalidate func is passed in. + invalidateFunc?.(); + return { createdInstance, feed }; + } catch (e) { + if (createdInstance) { + await createdInstance.put({ + status: "cancelled", + }); + } + if (feed) { + await feed.delete(); + } + throw new Error("Failed to create a Feed"); } - await feed.put({ name: feedName }); - //invalidate the ui page if the feed is created. Do this only if invalidate func is passed in. - invalidateFunc?.(); - return { createdInstance, feed }; } function* downloadFolder( diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index 5aa096b64..9735a64e5 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -213,6 +213,7 @@ function* uploadFileBatch( invalidateFunc, ); } catch (e) { + console.log("E", e); yield put( setFileUploadStatus({ step: "Error: Failed to create a feed", From 2dd89f307f55265bbb14a86213e327ce4efb06ab Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 5 Sep 2024 15:05:34 -0400 Subject: [PATCH 171/337] feat: Implement sorting in the Feeds List Table --- src/components/Feeds/FeedListView.tsx | 205 ++++++++++++------ .../NewLibrary/components/LibraryTable.tsx | 59 ++++- src/store/cart/uploadSaga.ts | 1 - 3 files changed, 197 insertions(+), 68 deletions(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index b7db6379e..318a9dac5 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -15,11 +15,11 @@ import { Tooltip, } from "@patternfly/react-core"; import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; -import { useQuery } from "@tanstack/react-query"; +import { useQuery, useQueries } from "@tanstack/react-query"; import { format } from "date-fns"; import { debounce } from "lodash"; import type React from "react"; -import { useContext, useEffect, useState } from "react"; +import { useContext, useEffect, useState, useMemo } from "react"; import { useNavigate } from "react-router"; import { useTypedSelector } from "../../store/hooks"; import { AddNodeProvider } from "../AddNode/context"; @@ -37,8 +37,67 @@ import WrapperConnect from "../Wrapper"; import FeedSearch from "./FeedsSearch"; import { useFeedListData } from "./useFeedListData"; import { getPluginInstanceDetails } from "./utilties"; - const { Paragraph } = Typography; +import { SortByDirection } from "@patternfly/react-table"; + +interface ColumnDefinition { + id: string; + label: string; + comparator: (a: Feed, b: Feed, detailsA: any, detailsB: any) => number; +} + +const COLUMN_DEFINITIONS: ColumnDefinition[] = [ + { + id: "id", + label: "ID", + comparator: (a, b) => a.data.id - b.data.id, + }, + { + id: "analysis", + label: "Analysis", + comparator: (a, b) => a.data.name.localeCompare(b.data.name), + }, + { + id: "created", + label: "Created", + comparator: (a, b) => + new Date(a.data.creation_date).getTime() - + new Date(b.data.creation_date).getTime(), + }, + { + id: "creator", + label: "Creator", + comparator: (a, b) => + a.data.owner_username.localeCompare(b.data.owner_username), + }, + { + id: "runtime", + label: "Run Time", + comparator: (_a, _b, detailsA, detailsB) => { + const timeA = detailsA?.time || "0"; + const timeB = detailsB?.time || "0"; + return timeA.localeCompare(timeB); + }, + }, + { + id: "size", + label: "Size", + comparator: (_a, _b, detailsA, detailsB) => { + const sizeA = detailsA?.size || "0"; + const sizeB = detailsB?.size || "0"; + return sizeA.localeCompare(sizeB); + }, + }, + { + id: "status", + label: "Status", + comparator: (_a, _b, detailsA, detailsB) => { + const progressA = detailsA?.progress || 0; + const progressB = detailsB?.progress || 0; + return progressA - progressB; + }, + }, +]; const TableSelectable: React.FC = () => { const navigate = useNavigate(); @@ -46,6 +105,68 @@ const TableSelectable: React.FC = () => { useFeedListData(); const isLoggedIn = useTypedSelector((state) => state.user.isLoggedIn); const { perPage, page, type, search, searchType } = searchFolderData; + const [activeSortIndex, setActiveSortIndex] = useState<number>(0); + const [activeSortDirection, setActiveSortDirection] = + useState<SortByDirection>(SortByDirection.desc); + + const feedQueries = useQueries({ + queries: feedsToDisplay.map((feed) => ({ + queryKey: ["feedDetails", feed.data.id], + queryFn: async () => { + const res = await getPluginInstanceDetails(feed); + return { [feed.data.id]: { details: res } }; + }, + refetchInterval: (data: any) => { + const details = data?.[feed.data.id]?.details; + if (details?.progress === 100 || details?.error === true) { + return false; // Stop polling + } + return 2000; // Poll every 2 seconds + }, + })), + }); + + const feedDetails = useMemo(() => { + return Object.assign({}, ...feedQueries.map((query) => query.data || {})); + }, [feedQueries]); + + const getSortParams = (columnIndex: number) => ({ + sortBy: { + index: activeSortIndex as number, + direction: activeSortDirection, + }, + onSort: ( + _event: React.MouseEvent, + index: number, + direction: SortByDirection, + ) => { + setActiveSortIndex(index); + setActiveSortDirection(direction); + }, + columnIndex, + }); + + const sortedFeeds = useMemo(() => { + if (activeSortIndex !== null && feedDetails) { + const comparator = COLUMN_DEFINITIONS[activeSortIndex].comparator; + return [...feedsToDisplay].sort((a, b) => + activeSortDirection === SortByDirection.asc + ? comparator( + a, + b, + feedDetails[a.data.id]?.details, + feedDetails[b.data.id]?.details, + ) + : comparator( + b, + a, + feedDetails[b.data.id]?.details, + feedDetails[a.data.id]?.details, + ), + ); + } + return feedsToDisplay; + }, [feedsToDisplay, activeSortIndex, activeSortDirection, feedDetails]); const onSetPage = ( _: React.MouseEvent | React.KeyboardEvent | MouseEvent, @@ -85,16 +206,6 @@ const TableSelectable: React.FC = () => { } }, [isLoggedIn, navigate, perPage, page, searchType, search, type]); - const columnNames = { - id: "ID", - analysis: "Analysis", - created: "Created", - creator: "Creator", - runtime: "Run Time", - size: "Size", - status: "Status", - }; - const generatePagination = (feedCount?: number) => { if (!feedCount && loadingFeedState) { return <Skeleton width="25%" screenreaderText="Loaded Feed Count" />; @@ -184,21 +295,23 @@ const TableSelectable: React.FC = () => { <Thead> <Tr> <Th /> - {Object.values(columnNames).map((name) => ( - <Th key={name}>{name}</Th> + {COLUMN_DEFINITIONS.map((column, columnIndex) => ( + <Th key={column.id} sort={getSortParams(columnIndex)}> + {column.label} + </Th> ))} </Tr> </Thead> <Tbody> - {feedsToDisplay.map((feed, rowIndex) => ( + {sortedFeeds.map((feed, rowIndex) => ( <TableRow key={feed.data.id} feed={feed} rowIndex={rowIndex} - columnNames={columnNames} allFeeds={feedsToDisplay} type={type} additionalKeys={[perPage, page, type, search, searchType]} + details={feedDetails?.[feed.data.id]?.details} /> ))} </Tbody> @@ -217,60 +330,26 @@ interface TableRowProps { rowIndex: number; feed: Feed; allFeeds: Feed[]; - columnNames: { - id: string; - analysis: string; - created: string; - creator: string; - runtime: string; - size: string; - status: string; - }; type: string; additionalKeys: string[]; + details: any; } const TableRow: React.FC<TableRowProps> = ({ rowIndex, feed, - columnNames, additionalKeys, + details, }) => { const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); const { handleOnClick } = handlers; const navigate = useNavigate(); - const [intervalMs, setIntervalMs] = useState(2000); const { isDarkTheme } = useContext(ThemeContext); - - const { data } = useQuery({ - queryKey: ["feedResources", feed], - queryFn: async () => { - try { - const res = await getPluginInstanceDetails(feed); - if (res.progress === 100 || res.error === true) { - setIntervalMs(0); - } - - return { - [feed.data.id]: { - details: res, - }, - }; - } catch (error) { - setIntervalMs(0); - return {}; - } - }, - refetchInterval: intervalMs, - }); - const getFolderForThisFeed = async () => { const payload = await feed.getFolder(); return payload; }; - - const details = data?.[feed.data.id].details; const backgroundColor = isDarkTheme ? "#002952" : "#E7F1FA"; const backgroundRow = details && details.progress < 100 && !details.error @@ -342,23 +421,19 @@ const TableRow: React.FC<TableRowProps> = ({ }, }} /> - <Td dataLabel={columnNames.id}>{feed.data.id}</Td> + <Td dataLabel="ID">{feed.data.id}</Td> - <Td dataLabel={columnNames.analysis}> + <Td dataLabel="analysis"> <FeedInfoColumn feed={feed} onClick={onFeedNameClick} /> </Td> - <Td dataLabel={columnNames.created}> + <Td dataLabel="created"> {format(new Date(feed.data.creation_date), "dd MMM yyyy, HH:mm")} </Td> - <Td dataLabel={columnNames.creator}>{feed.data.owner_username}</Td> - <Td dataLabel={columnNames.runtime}> - {data?.[feed.data.id].details.time} - </Td> - <Td dataLabel={columnNames.size}> - {data?.[feed.data.id].details.size} - </Td> - <Td dataLabel={columnNames.status}> - <DonutUtilization details={data?.[feed.data.id].details} /> + <Td dataLabel="creator">{feed.data.owner_username}</Td> + <Td dataLabel="runtime">{details?.time}</Td> + <Td dataLabel="size">{details?.size}</Td> + <Td dataLabel="status"> + <DonutUtilization details={details} /> </Td> </Tr> </FolderContextMenu> diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index c6f2ce1d2..cfe92e872 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -6,6 +6,9 @@ import type { import { Button } from "@patternfly/react-core"; import { Caption, + type ISortBy, + type OnSort, + type SortByDirection, Table, Tbody, Td, @@ -217,12 +220,59 @@ const LibraryTable: React.FC<TableProps> = ({ const navigate = useNavigate(); const [preview, setShowPreview] = useState(false); const [selectedFile, setSelectedFile] = useState<FileBrowserFolderFile>(); + const [sortBy, setSortBy] = useState<ISortBy>({ + index: 0, + direction: "asc", + }); const handleFileClick = (file: FileBrowserFolderFile) => { setSelectedFile(file); setShowPreview(true); }; + const onSort: OnSort = (_event, columnIndex, sortByDirection) => { + setSortBy({ index: columnIndex, direction: sortByDirection }); + return sortRows(columnIndex, sortByDirection); + }; + + const sortRows = (index: number, direction: SortByDirection) => { + const sortedData = { ...data }; + if (index === 1) { + sortedData.folders.sort( + (a, b) => + getFolderName(a, computedPath).localeCompare( + getFolderName(b, computedPath), + ) * (direction === "asc" ? 1 : -1), + ); + sortedData.files.sort( + (a, b) => + getFileName(a).localeCompare(getFileName(b)) * + (direction === "asc" ? 1 : -1), + ); + sortedData.linkFiles.sort( + (a, b) => + getLinkFileName(a).localeCompare(getLinkFileName(b)) * + (direction === "asc" ? 1 : -1), + ); + } else if (index === 2) { + sortedData.folders.sort((a, b) => { + const dateA = new Date(a.data.creation_date).getTime(); + const dateB = new Date(b.data.creation_date).getTime(); + return (dateA - dateB) * (direction === "asc" ? 1 : -1); + }); + sortedData.files.sort((a, b) => { + const dateA = new Date(a.data.creation_date).getTime(); + const dateB = new Date(b.data.creation_date).getTime(); + return (dateA - dateB) * (direction === "asc" ? 1 : -1); + }); + sortedData.linkFiles.sort((a, b) => { + const dateA = new Date(a.data.creation_date).getTime(); + const dateB = new Date(b.data.creation_date).getTime(); + return (dateA - dateB) * (direction === "asc" ? 1 : -1); + }); + } + }; + return ( <React.Fragment> <Drawer @@ -243,13 +293,18 @@ const LibraryTable: React.FC<TableProps> = ({ className="library-table" variant="compact" aria-label="Simple table" + isStriped={true} > <Caption>Data Library</Caption> <Thead> <Tr> <Th arial-label="Select a row" /> - <Th name="name">{columnNames.name}</Th> - <Th name="date">{columnNames.date}</Th> + <Th sort={{ sortBy, onSort, columnIndex: 1 }} name="name"> + {columnNames.name} + </Th> + <Th sort={{ sortBy, onSort, columnIndex: 2 }} name="date"> + {columnNames.date} + </Th> <Th name="owner">{columnNames.owner}</Th> <Th name="size">{columnNames.size}</Th> </Tr> diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index 9735a64e5..5aa096b64 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -213,7 +213,6 @@ function* uploadFileBatch( invalidateFunc, ); } catch (e) { - console.log("E", e); yield put( setFileUploadStatus({ step: "Error: Failed to create a feed", From e7f8df497c0d67620c4f867daed6e913ce27904a Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 5 Sep 2024 16:08:19 -0400 Subject: [PATCH 172/337] feat: Update the "CreateFeed" option in the Library Page --- .../FeedOutputBrowser/FeedOutputBrowser.tsx | 8 +- .../FeedOutputBrowser/FileBrowser.tsx | 135 ++++++++---------- src/components/FeedOutputBrowser/types.ts | 2 +- .../FeedOutputBrowser/useFeedBrowser.tsx | 3 +- src/components/Feeds/FeedListView.tsx | 6 +- .../NewLibrary/components/Operations.tsx | 25 ++-- .../NewLibrary/utils/useOperations.tsx | 50 +++++-- src/store/cart/downloadSaga.ts | 1 - 8 files changed, 126 insertions(+), 104 deletions(-) diff --git a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx index 293ddd532..5eca21fb5 100644 --- a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx +++ b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx @@ -5,7 +5,7 @@ import { EmptyStateVariant, Title, } from "@patternfly/react-core"; -import { Alert } from "../Antd"; +import { Alert, Spin } from "../Antd"; import { SpinContainer } from "../Common"; import "./FeedOutputBrowser.css"; import FileBrowser from "./FileBrowser"; @@ -29,15 +29,15 @@ const FeedOutputBrowser: React.FC<FeedOutputBrowserProps> = () => { error, currentPath, } = useFeedBrowser(); - return ( <div style={{ height: "100%" }} className="feed-output-browser"> - {pluginFilesPayload && selected && !isError ? ( + {filesLoading ? ( + <SpinContainer title="Fetching Files..." /> + ) : pluginFilesPayload && selected && !isError ? ( <FileBrowser selected={selected} handleFileClick={handleFileClick} pluginFilesPayload={pluginFilesPayload} - filesLoading={filesLoading} currentPath={currentPath} /> ) : statusTitle && statusTitles.includes(statusTitle) ? ( diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 459184cb1..34deb0331 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -61,26 +61,23 @@ const columnNames = { }; const FileBrowser = (props: FileBrowserProps) => { - const { handlers } = useLongPress(); - const { handleOnClick } = handlers; const dispatch = useDispatch(); const feed = useTypedSelector((state) => state.feed.currentFeed.data); const handleDownloadMutation = useDownload(feed); const [api, contextHolder] = notification.useNotification(); const { isSuccess, isError, error: downloadError } = handleDownloadMutation; - const { isDarkTheme } = useContext(ThemeContext); + const { pluginFilesPayload, handleFileClick, selected, - filesLoading, + currentPath: additionalKey, } = props; const selectedFile = useTypedSelector((state) => state.explorer.selectedFile); const drawerState = useTypedSelector((state) => state.drawers); const username = useTypedSelector((state) => state.user.username); const { folderFiles, linkFiles, children, path } = pluginFilesPayload; - const breadcrumb = path.split("/"); const currentPath = `home/${username}/feeds/feed_${feed?.data.id}/${selected?.data.plugin_name}_${selected?.data.id}/data`; @@ -244,84 +241,76 @@ const FileBrowser = (props: FileBrowserProps) => { <Th aria-label="file-size">{columnNames.size}</Th> </Tr> </Thead> - {filesLoading ? ( - <SpinContainer title="Fetching Files for this path..." /> - ) : ( - <Tbody> - {folderFiles.map( - (resource: FileBrowserFolderFile, index) => { - return ( - <FileRow - rowIndex={index} - key={resource.data.fname} - resource={resource} - name={getFileName(resource)} - date={resource.data.creation_date} - owner={resource.data.owner_username} - size={resource.data.fsize} - computedPath={path} - handleFolderClick={() => { - return; - }} - handleFileClick={() => { - toggleAnimation(); - dispatch( - setSelectedFile( - resource as FileBrowserFolderFile, - ), - ); - !drawerState.preview.open && - dispatch(setFilePreviewPanel()); - }} - /> - ); - }, - )} - {linkFiles.map( - (resource: FileBrowserFolderLinkFile, index) => { - return ( - <LinkRow - rowIndex={index} - key={resource.data.path} - resource={resource} - name={getLinkFileName(resource)} - date={resource.data.creation_date} - owner={resource.data.owner_username} - size={resource.data.fsize} - computedPath={path} - handleFolderClick={() => { - return; - }} - handleFileClick={() => { - handleFileClick(resource.data.path); - }} - /> - ); - }, - )} - - {children.map((resource: FileBrowserFolder, index) => { + <Tbody> + {folderFiles.map((resource: FileBrowserFolderFile, index) => { + return ( + <FileRow + rowIndex={index} + key={resource.data.fname} + resource={resource} + name={getFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={path} + handleFolderClick={() => { + return; + }} + handleFileClick={() => { + toggleAnimation(); + dispatch( + setSelectedFile(resource as FileBrowserFolderFile), + ); + !drawerState.preview.open && + dispatch(setFilePreviewPanel()); + }} + /> + ); + })} + {linkFiles.map( + (resource: FileBrowserFolderLinkFile, index) => { return ( - <FolderRow + <LinkRow rowIndex={index} key={resource.data.path} resource={resource} - name={getFolderName(resource, path)} + name={getLinkFileName(resource)} date={resource.data.creation_date} - owner=" " - size={0} + owner={resource.data.owner_username} + size={resource.data.fsize} computedPath={path} - handleFolderClick={() => - handleFileClick(resource.data.path) - } - handleFileClick={() => { + handleFolderClick={() => { return; }} + handleFileClick={() => { + handleFileClick(resource.data.path); + }} /> ); - })} - </Tbody> - )} + }, + )} + + {children.map((resource: FileBrowserFolder, index) => { + return ( + <FolderRow + rowIndex={index} + key={resource.data.path} + resource={resource} + name={getFolderName(resource, path)} + date={resource.data.creation_date} + owner=" " + size={0} + computedPath={path} + handleFolderClick={() => + handleFileClick(resource.data.path) + } + handleFileClick={() => { + return; + }} + /> + ); + })} + </Tbody> </Table> </DrawerContentBody> )} diff --git a/src/components/FeedOutputBrowser/types.ts b/src/components/FeedOutputBrowser/types.ts index 9e0b3110c..cfc997f95 100644 --- a/src/components/FeedOutputBrowser/types.ts +++ b/src/components/FeedOutputBrowser/types.ts @@ -18,7 +18,7 @@ export interface FileBrowserProps { pluginFilesPayload: FilesPayload; handleFileClick: (path: string) => void; selected: PluginInstance; - filesLoading: boolean; + currentPath: string; } diff --git a/src/components/FeedOutputBrowser/useFeedBrowser.tsx b/src/components/FeedOutputBrowser/useFeedBrowser.tsx index a911548bf..3d134a91a 100644 --- a/src/components/FeedOutputBrowser/useFeedBrowser.tsx +++ b/src/components/FeedOutputBrowser/useFeedBrowser.tsx @@ -2,7 +2,7 @@ import type { FileBrowserFolderFile, FileBrowserFolderLinkFile, } from "@fnndsc/chrisapi"; -import { useQuery, useQueryClient } from "@tanstack/react-query"; +import { useQuery } from "@tanstack/react-query"; import React from "react"; import ChrisAPIClient from "../../api/chrisapiclient"; import { catchError, fetchResource } from "../../api/common"; @@ -77,7 +77,6 @@ export const fetchFilesFromAPath = async ( }; export const useFeedBrowser = () => { - const queryClient = useQueryClient(); const drawerState = useTypedSelector((state) => state.drawers); const [download, setDownload] = React.useState(getInitialDownloadState); const [currentPath, setCurrentPath] = React.useState(""); diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 318a9dac5..6498731b0 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -15,11 +15,12 @@ import { Tooltip, } from "@patternfly/react-core"; import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; -import { useQuery, useQueries } from "@tanstack/react-query"; +import { SortByDirection } from "@patternfly/react-table"; +import { useQueries } from "@tanstack/react-query"; import { format } from "date-fns"; import { debounce } from "lodash"; import type React from "react"; -import { useContext, useEffect, useState, useMemo } from "react"; +import { useContext, useEffect, useMemo, useState } from "react"; import { useNavigate } from "react-router"; import { useTypedSelector } from "../../store/hooks"; import { AddNodeProvider } from "../AddNode/context"; @@ -38,7 +39,6 @@ import FeedSearch from "./FeedsSearch"; import { useFeedListData } from "./useFeedListData"; import { getPluginInstanceDetails } from "./utilties"; const { Paragraph } = Typography; -import { SortByDirection } from "@patternfly/react-table"; interface ColumnDefinition { id: string; diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index d182c24c3..5aeb30679 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -293,6 +293,11 @@ const MODAL_TYPE_LABELS: Record< inputLabel: "Rename", buttonLabel: "Rename", }, + createFeed: { + modalTitle: "Create Feed", + inputLabel: "Feed Name", + buttonLabel: "Create", + }, createFeedWithFile: { modalTitle: "Create Feed", inputLabel: "Feed Name", @@ -344,6 +349,9 @@ export const AddModal = ({ modalState.additionalProps.createFeedWithFile.defaultFeedName, ); } + if (modalState.additionalProps?.createFeed) { + setInputValue(modalState.additionalProps.createFeed.defaultFeedName); + } }, [modalState.type]); const handleClose = () => { @@ -374,14 +382,15 @@ export const AddModal = ({ aria-label={inputLabel} placeholder={inputLabel} /> - {modalState.type === "createFeedWithFile" && ( - <HelperText> - <HelperTextItem> - Please provide a name for your feed or hit 'Create' to use the - default name - </HelperTextItem> - </HelperText> - )} + {modalState.type === "createFeedWithFile" || + (modalState.type === "createFeed" && ( + <HelperText> + <HelperTextItem> + Please provide a name for your feed or hit 'Create' to use the + default name + </HelperTextItem> + </HelperText> + ))} </FormGroup> {modalState.type === "share" && ( <Fragment> diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index f57e24100..35007ccc1 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -1,28 +1,28 @@ -import { useContext, useRef, useState } from "react"; -import { useDispatch } from "react-redux"; -import { useMutation } from "@tanstack/react-query"; import type { FileBrowserFolder, FileBrowserFolderList, } from "@fnndsc/chrisapi"; +import { useMutation } from "@tanstack/react-query"; +import { useRef, useState } from "react"; +import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../../api/chrisapiclient"; -import { MainRouterContext } from "../../../routes"; +import { catchError, getFileName } from "../../../api/common"; import { setToggleCart, startAnonymize, startDownload, startUpload, } from "../../../store/cart/cartSlice"; +import { createFeed as createFeedSaga } from "../../../store/cart/downloadSaga"; +import type { SelectionPayload } from "../../../store/cart/types"; import { useTypedSelector } from "../../../store/hooks"; import { notification } from "../../Antd"; +import { getFolderName } from "../components/FolderCard"; import type { AdditionalValues } from "../components/Operations"; -import { useOperationsContext, type OriginState } from "../context"; +import { type OriginState, useOperationsContext } from "../context"; import useDeletePayload from "../utils/useDeletePayload"; -import useFeedOperations from "./useFeedOperations"; -import { catchError } from "../../../api/common"; -import { getFolderName } from "../components/FolderCard"; import { fetchFeedForPath } from "./longpress"; -import { create } from "lodash"; +import useFeedOperations from "./useFeedOperations"; export interface ModalState { type: string; @@ -49,7 +49,6 @@ export const useFolderOperations = ( createFeed?: boolean, ) => { const { handleOrigin, invalidateQueries } = useOperationsContext(); - const router = useContext(MainRouterContext); const { selectedPaths } = useTypedSelector((state) => state.cart); const username = useTypedSelector((state) => state.user.username) as string; const dispatch = useDispatch(); @@ -140,6 +139,12 @@ export const useFolderOperations = ( }); }; + const createFeedFromMenu = async (inputValue: string) => { + handleOrigin(origin); + const pathList = selectedPaths.map((payload) => payload.path); + await createFeedSaga(pathList, inputValue, invalidateQueries); + }; + const shareFolder = async ( targetUsername: string, additionalValues?: AdditionalValues, @@ -218,6 +223,10 @@ export const useFolderOperations = ( await handleUpload(event, type === "folder", inputValue); break; } + case "createFeed": { + await createFeedFromMenu(inputValue); + break; + } default: break; } @@ -235,11 +244,28 @@ export const useFolderOperations = ( }) => handleModalSubmit(inputValue, additionalValues), }); + const getFeedNameForSinglePath = (path: SelectionPayload) => { + const { payload } = path; + const name = payload.data.path || payload.data.fname; + return getFileName(name); + }; + const handleOperations = (operationKey: string) => { const operationsMap: Record<string, () => void> = { createFeed: () => { - const paths = selectedPaths.map(({ path }) => path); - router.actions.createFeedWithData(paths); + const defaultFeedName = + selectedPaths.length > 1 + ? "Feed created from your Library" + : `Feed created for ${getFeedNameForSinglePath(selectedPaths[0])}`; + setModalState({ + type: "createFeed", + isOpen: true, + additionalProps: { + createFeed: { + defaultFeedName, + }, + }, + }); }, download: () => { handleOrigin(origin); diff --git a/src/store/cart/downloadSaga.ts b/src/store/cart/downloadSaga.ts index 91b490397..2f9d68e36 100644 --- a/src/store/cart/downloadSaga.ts +++ b/src/store/cart/downloadSaga.ts @@ -28,7 +28,6 @@ import { type PayloadTypes, type SelectionPayload, } from "./types"; -import { create } from "lodash"; export function* setStatus( type: string, From c45c1f4b7185416ce797b90886613e6cf868d52f Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 5 Sep 2024 16:35:56 -0400 Subject: [PATCH 173/337] feat: Use Inter as the default font --- package-lock.json | 396 ++-------------------------------------------- package.json | 6 +- src/app.css | 12 +- src/main.tsx | 1 + 4 files changed, 23 insertions(+), 392 deletions(-) diff --git a/package-lock.json b/package-lock.json index b824f763f..2ea23a457 100644 --- a/package-lock.json +++ b/package-lock.json @@ -13,6 +13,7 @@ "@cornerstonejs/streaming-image-volume-loader": "^1.82.4", "@cornerstonejs/tools": "^1.82.4", "@fnndsc/chrisapi": "^1.22.0", + "@fontsource/inter": "^5.0.20", "@niivue/niivue": "^0.41.1", "@patternfly/react-catalog-view-extension": "^5.0.0", "@patternfly/react-charts": "^7.3.0", @@ -91,7 +92,7 @@ "playwright": "^1.41.2", "redux-devtools-extension": "^2.13.9", "redux-logger": "^3.0.6", - "rollup-plugin-node-builtins": "^2.1.2", + "rollup-plugin-node-builtins": "^2.0.0", "vite": "^5.3.2", "vite-plugin-istanbul": "^6.0.2", "vitest": "^2.0.5" @@ -807,6 +808,12 @@ "core-js": "^3.36.1" } }, + "node_modules/@fontsource/inter": { + "version": "5.0.20", + "resolved": "https://registry.npmjs.org/@fontsource/inter/-/inter-5.0.20.tgz", + "integrity": "sha512-rtw2F7xfM7rJmmnncXnR4ADr5wXsp4GyN1O1jmQJ1PMjAK+bm620/ZkQkeOYOkGoa09OksGinOeMA+Mkt6K9PQ==", + "license": "OFL-1.1" + }, "node_modules/@icr/polyseg-wasm": { "version": "0.4.0", "license": "MIT", @@ -2099,21 +2106,6 @@ "node": ">=10" } }, - "node_modules/abstract-leveldown": { - "version": "0.12.4", - "dev": true, - "license": "MIT", - "dependencies": { - "xtend": "~3.0.0" - } - }, - "node_modules/abstract-leveldown/node_modules/xtend": { - "version": "3.0.0", - "dev": true, - "engines": { - "node": ">=0.4" - } - }, "node_modules/accessor-fn": { "version": "1.5.1", "license": "MIT", @@ -2402,35 +2394,6 @@ "node": "*" } }, - "node_modules/bl": { - "version": "0.8.2", - "dev": true, - "license": "MIT", - "dependencies": { - "readable-stream": "~1.0.26" - } - }, - "node_modules/bl/node_modules/isarray": { - "version": "0.0.1", - "dev": true, - "license": "MIT" - }, - "node_modules/bl/node_modules/readable-stream": { - "version": "1.0.34", - "dev": true, - "license": "MIT", - "dependencies": { - "core-util-is": "~1.0.0", - "inherits": "~2.0.1", - "isarray": "0.0.1", - "string_decoder": "~0.10.x" - } - }, - "node_modules/bl/node_modules/string_decoder": { - "version": "0.10.31", - "dev": true, - "license": "MIT" - }, "node_modules/bn.js": { "version": "5.2.1", "dev": true, @@ -2483,15 +2446,6 @@ "safe-buffer": "^5.1.2" } }, - "node_modules/browserify-fs": { - "version": "1.0.0", - "dev": true, - "dependencies": { - "level-filesystem": "^1.0.1", - "level-js": "^2.1.3", - "levelup": "^0.18.2" - } - }, "node_modules/browserify-rsa": { "version": "4.1.0", "dev": true, @@ -2556,11 +2510,6 @@ "dev": true, "license": "MIT" }, - "node_modules/buffer-from": { - "version": "1.1.2", - "dev": true, - "license": "MIT" - }, "node_modules/buffer-xor": { "version": "1.0.3", "dev": true, @@ -2744,14 +2693,6 @@ "wrap-ansi": "^6.2.0" } }, - "node_modules/clone": { - "version": "0.1.19", - "dev": true, - "license": "MIT", - "engines": { - "node": "*" - } - }, "node_modules/clsx": { "version": "1.2.1", "license": "MIT", @@ -2804,20 +2745,6 @@ "version": "0.0.1", "license": "MIT" }, - "node_modules/concat-stream": { - "version": "1.6.2", - "dev": true, - "engines": [ - "node >= 0.8" - ], - "license": "MIT", - "dependencies": { - "buffer-from": "^1.0.0", - "inherits": "^2.0.3", - "readable-stream": "^2.2.2", - "typedarray": "^0.0.6" - } - }, "node_modules/console-clear": { "version": "1.1.1", "license": "MIT", @@ -3261,14 +3188,6 @@ "url": "https://github.com/sponsors/sindresorhus" } }, - "node_modules/deferred-leveldown": { - "version": "0.2.0", - "dev": true, - "license": "MIT", - "dependencies": { - "abstract-leveldown": "~0.12.1" - } - }, "node_modules/define-data-property": { "version": "1.1.4", "license": "MIT", @@ -3481,17 +3400,6 @@ "url": "https://github.com/fb55/entities?sponsor=1" } }, - "node_modules/errno": { - "version": "0.1.8", - "dev": true, - "license": "MIT", - "dependencies": { - "prr": "~1.0.1" - }, - "bin": { - "errno": "cli.js" - } - }, "node_modules/error-ex": { "version": "1.3.2", "license": "MIT", @@ -4218,11 +4126,6 @@ "node": ">=12" } }, - "node_modules/foreach": { - "version": "2.0.6", - "dev": true, - "license": "MIT" - }, "node_modules/foreground-child": { "version": "2.0.0", "dev": true, @@ -4280,34 +4183,6 @@ "url": "https://github.com/sponsors/ljharb" } }, - "node_modules/fwd-stream": { - "version": "1.0.4", - "dev": true, - "dependencies": { - "readable-stream": "~1.0.26-4" - } - }, - "node_modules/fwd-stream/node_modules/isarray": { - "version": "0.0.1", - "dev": true, - "license": "MIT" - }, - "node_modules/fwd-stream/node_modules/readable-stream": { - "version": "1.0.34", - "dev": true, - "license": "MIT", - "dependencies": { - "core-util-is": "~1.0.0", - "inherits": "~2.0.1", - "isarray": "0.0.1", - "string_decoder": "~0.10.x" - } - }, - "node_modules/fwd-stream/node_modules/string_decoder": { - "version": "0.10.31", - "dev": true, - "license": "MIT" - }, "node_modules/gensync": { "version": "1.0.0-beta.2", "license": "MIT", @@ -4582,11 +4457,6 @@ "node": ">=16.17.0" } }, - "node_modules/idb-wrapper": { - "version": "1.7.2", - "dev": true, - "license": "MIT" - }, "node_modules/immer": { "version": "10.1.1", "license": "MIT", @@ -4644,10 +4514,6 @@ "node": ">=12" } }, - "node_modules/indexof": { - "version": "0.0.1", - "dev": true - }, "node_modules/inflight": { "version": "1.0.6", "license": "ISC", @@ -4681,13 +4547,6 @@ "loose-envify": "^1.0.0" } }, - "node_modules/is": { - "version": "0.2.7", - "dev": true, - "engines": { - "node": "*" - } - }, "node_modules/is-arrayish": { "version": "0.2.1", "license": "MIT" @@ -4713,10 +4572,6 @@ "node": ">=8" } }, - "node_modules/is-object": { - "version": "0.1.2", - "dev": true - }, "node_modules/is-plain-object": { "version": "5.0.0", "license": "MIT", @@ -4753,11 +4608,6 @@ "dev": true, "license": "MIT" }, - "node_modules/isbuffer": { - "version": "0.0.0", - "dev": true, - "license": "MIT" - }, "node_modules/isexe": { "version": "2.0.0", "dev": true, @@ -5115,194 +4965,6 @@ "win32" ] }, - "node_modules/level-blobs": { - "version": "0.1.7", - "dev": true, - "dependencies": { - "level-peek": "1.0.6", - "once": "^1.3.0", - "readable-stream": "^1.0.26-4" - } - }, - "node_modules/level-blobs/node_modules/isarray": { - "version": "0.0.1", - "dev": true, - "license": "MIT" - }, - "node_modules/level-blobs/node_modules/readable-stream": { - "version": "1.1.14", - "dev": true, - "license": "MIT", - "dependencies": { - "core-util-is": "~1.0.0", - "inherits": "~2.0.1", - "isarray": "0.0.1", - "string_decoder": "~0.10.x" - } - }, - "node_modules/level-blobs/node_modules/string_decoder": { - "version": "0.10.31", - "dev": true, - "license": "MIT" - }, - "node_modules/level-filesystem": { - "version": "1.2.0", - "dev": true, - "dependencies": { - "concat-stream": "^1.4.4", - "errno": "^0.1.1", - "fwd-stream": "^1.0.4", - "level-blobs": "^0.1.7", - "level-peek": "^1.0.6", - "level-sublevel": "^5.2.0", - "octal": "^1.0.0", - "once": "^1.3.0", - "xtend": "^2.2.0" - } - }, - "node_modules/level-fix-range": { - "version": "1.0.2", - "dev": true, - "license": "MIT" - }, - "node_modules/level-hooks": { - "version": "4.5.0", - "dev": true, - "dependencies": { - "string-range": "~1.2" - } - }, - "node_modules/level-js": { - "version": "2.2.4", - "dev": true, - "license": "BSD-2-Clause", - "dependencies": { - "abstract-leveldown": "~0.12.0", - "idb-wrapper": "^1.5.0", - "isbuffer": "~0.0.0", - "ltgt": "^2.1.2", - "typedarray-to-buffer": "~1.0.0", - "xtend": "~2.1.2" - } - }, - "node_modules/level-js/node_modules/object-keys": { - "version": "0.4.0", - "dev": true, - "license": "MIT" - }, - "node_modules/level-js/node_modules/xtend": { - "version": "2.1.2", - "dev": true, - "dependencies": { - "object-keys": "~0.4.0" - }, - "engines": { - "node": ">=0.4" - } - }, - "node_modules/level-peek": { - "version": "1.0.6", - "dev": true, - "license": "MIT", - "dependencies": { - "level-fix-range": "~1.0.2" - } - }, - "node_modules/level-sublevel": { - "version": "5.2.3", - "dev": true, - "license": "MIT", - "dependencies": { - "level-fix-range": "2.0", - "level-hooks": ">=4.4.0 <5", - "string-range": "~1.2.1", - "xtend": "~2.0.4" - } - }, - "node_modules/level-sublevel/node_modules/level-fix-range": { - "version": "2.0.0", - "dev": true, - "license": "MIT", - "dependencies": { - "clone": "~0.1.9" - } - }, - "node_modules/level-sublevel/node_modules/object-keys": { - "version": "0.2.0", - "dev": true, - "license": "MIT", - "dependencies": { - "foreach": "~2.0.1", - "indexof": "~0.0.1", - "is": "~0.2.6" - } - }, - "node_modules/level-sublevel/node_modules/xtend": { - "version": "2.0.6", - "dev": true, - "dependencies": { - "is-object": "~0.1.2", - "object-keys": "~0.2.0" - }, - "engines": { - "node": ">=0.4" - } - }, - "node_modules/levelup": { - "version": "0.18.6", - "dev": true, - "license": "MIT", - "dependencies": { - "bl": "~0.8.1", - "deferred-leveldown": "~0.2.0", - "errno": "~0.1.1", - "prr": "~0.0.0", - "readable-stream": "~1.0.26", - "semver": "~2.3.1", - "xtend": "~3.0.0" - } - }, - "node_modules/levelup/node_modules/isarray": { - "version": "0.0.1", - "dev": true, - "license": "MIT" - }, - "node_modules/levelup/node_modules/prr": { - "version": "0.0.0", - "dev": true, - "license": "MIT" - }, - "node_modules/levelup/node_modules/readable-stream": { - "version": "1.0.34", - "dev": true, - "license": "MIT", - "dependencies": { - "core-util-is": "~1.0.0", - "inherits": "~2.0.1", - "isarray": "0.0.1", - "string_decoder": "~0.10.x" - } - }, - "node_modules/levelup/node_modules/semver": { - "version": "2.3.2", - "dev": true, - "license": "BSD", - "bin": { - "semver": "bin/semver" - } - }, - "node_modules/levelup/node_modules/string_decoder": { - "version": "0.10.31", - "dev": true, - "license": "MIT" - }, - "node_modules/levelup/node_modules/xtend": { - "version": "3.0.0", - "dev": true, - "engines": { - "node": ">=0.4" - } - }, "node_modules/lines-and-columns": { "version": "1.2.4", "license": "MIT" @@ -5405,11 +5067,6 @@ "yallist": "^3.0.2" } }, - "node_modules/ltgt": { - "version": "2.2.1", - "dev": true, - "license": "MIT" - }, "node_modules/magic-string": { "version": "0.30.11", "dev": true, @@ -6262,11 +5919,6 @@ "node": ">= 0.4" } }, - "node_modules/octal": { - "version": "1.0.0", - "dev": true, - "license": "MIT" - }, "node_modules/once": { "version": "1.4.0", "license": "ISC", @@ -6646,11 +6298,6 @@ "version": "1.1.0", "license": "MIT" }, - "node_modules/prr": { - "version": "1.0.1", - "dev": true, - "license": "MIT" - }, "node_modules/public-encrypt": { "version": "4.0.3", "dev": true, @@ -7762,11 +7409,12 @@ } }, "node_modules/rollup-plugin-node-builtins": { - "version": "2.1.2", + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/rollup-plugin-node-builtins/-/rollup-plugin-node-builtins-2.0.0.tgz", + "integrity": "sha512-jvsEYNf5U95YttEQbs5c6H7YSMYGs3SWA8/MfnlQ9ddijsgYbq8uKx4WQ1J8Zyrq+tgPF0Quu48PURrlcMZWoQ==", "dev": true, "license": "ISC", "dependencies": { - "browserify-fs": "^1.0.0", "buffer-es6": "^4.9.2", "crypto-browserify": "^3.11.0", "process-es6": "^0.11.2" @@ -8335,11 +7983,6 @@ "version": "0.2.1", "license": "MIT" }, - "node_modules/string-range": { - "version": "1.2.2", - "dev": true, - "license": "MIT" - }, "node_modules/string-width": { "version": "4.2.3", "dev": true, @@ -8602,16 +8245,6 @@ "node": ">=8" } }, - "node_modules/typedarray": { - "version": "0.0.6", - "dev": true, - "license": "MIT" - }, - "node_modules/typedarray-to-buffer": { - "version": "1.0.4", - "dev": true, - "license": "MIT" - }, "node_modules/typescript": { "version": "5.5.4", "license": "Apache-2.0", @@ -9544,13 +9177,6 @@ "version": "2.20.3", "license": "MIT" }, - "node_modules/xtend": { - "version": "2.2.0", - "dev": true, - "engines": { - "node": ">=0.4" - } - }, "node_modules/y18n": { "version": "4.0.3", "dev": true, diff --git a/package.json b/package.json index 88b897f88..41cfa20d0 100644 --- a/package.json +++ b/package.json @@ -43,6 +43,7 @@ "@cornerstonejs/streaming-image-volume-loader": "^1.82.4", "@cornerstonejs/tools": "^1.82.4", "@fnndsc/chrisapi": "^1.22.0", + "@fontsource/inter": "^5.0.20", "@niivue/niivue": "^0.41.1", "@patternfly/react-catalog-view-extension": "^5.0.0", "@patternfly/react-charts": "^7.3.0", @@ -50,7 +51,6 @@ "@patternfly/react-log-viewer": "^5.2.0", "@patternfly/react-table": "^5.3.4", "@react-hook/resize-observer": "^2.0.1", - "@reduxjs/toolkit": "^2.2.7", "@tanstack/react-query": "^5.51.1", "@types/d3-shape": "^3.1.6", @@ -102,10 +102,10 @@ "vite-plugin-babel-macros": "^1.0.6" }, "devDependencies": { - "@redux-devtools/extension": "^3.3.0", "@biomejs/biome": "1.8.3", "@faker-js/faker": "^8.4.0", "@playwright/test": "^1.41.2", + "@redux-devtools/extension": "^3.3.0", "@types/d3-hierarchy": "^1.1.7", "@types/d3-selection": "^1.4.3", "@types/lodash": "^4.14.202", @@ -122,7 +122,7 @@ "playwright": "^1.41.2", "redux-devtools-extension": "^2.13.9", "redux-logger": "^3.0.6", - "rollup-plugin-node-builtins": "^2.1.2", + "rollup-plugin-node-builtins": "^2.0.0", "vite": "^5.3.2", "vite-plugin-istanbul": "^6.0.2", "vitest": "^2.0.5" diff --git a/src/app.css b/src/app.css index c8b3c18aa..731e27217 100644 --- a/src/app.css +++ b/src/app.css @@ -1,3 +1,7 @@ + body { + font-family: "Inter" +} + .dcm-preview { position: relative; height: 100%; @@ -66,8 +70,8 @@ .small-button { width: 20px; height: 20px; - font-size:12px; - + font-size: 12px; + } .large-button { @@ -77,9 +81,9 @@ .button-style { border-radius: 50% !important; - padding:1rem !important; + padding: 1rem !important; border: none !important; display: flex !important; justify-content: center !important; align-items: center !important; -} +} \ No newline at end of file diff --git a/src/main.tsx b/src/main.tsx index cca4d7d53..5bbf07bb7 100644 --- a/src/main.tsx +++ b/src/main.tsx @@ -3,6 +3,7 @@ import ReactDOM from "react-dom/client"; import App from "./App.tsx"; import { store } from "./store/configureStore.ts"; import { ThemeContextProvider } from "./components/DarkTheme/useTheme.tsx"; +import "@fontsource/inter/400.css"; // Defaults to weight 400. ReactDOM.createRoot(document.getElementById("root")!).render( <React.StrictMode> From 07d098cb005899262a7a1f78ca0e287a94e0ddce Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 6 Sep 2024 10:38:06 -0400 Subject: [PATCH 174/337] feat: Update the Library Table to use feed names --- .../NewLibrary/components/FolderCard.tsx | 30 ++++++------------- .../NewLibrary/components/LibraryTable.tsx | 29 +++++++++++++++--- src/components/NewLibrary/utils/longpress.tsx | 20 +++++++++++++ 3 files changed, 54 insertions(+), 25 deletions(-) diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index f08db70c8..d50f1f6f2 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -19,7 +19,10 @@ import { useTypedSelector } from "../../../store/hooks"; import { ThemeContext } from "../../DarkTheme/useTheme"; import { FolderIcon } from "../../Icons"; import { OperationContext } from "../context"; -import useLongPress, { getBackgroundRowColor } from "../utils/longpress"; +import useLongPress, { + getBackgroundRowColor, + useAssociatedFeed, +} from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; type Pagination = { @@ -71,8 +74,10 @@ export const SubFolderCard: React.FC<SubFolderCardProps> = (props) => { const isDarkTheme = useContext(ThemeContext).isDarkTheme; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const { handlers } = useLongPress(); + const { handleOnClick, handleOnMouseDown, handleCheckboxChange } = handlers; const folderName = getFolderName(folder, computedPath); + const { data: feedName, isLoading } = useAssociatedFeed(folderName); const creationDate = folder.data.creation_date; const secondsSinceCreation = differenceInSeconds(new Date(), creationDate); @@ -99,23 +104,6 @@ export const SubFolderCard: React.FC<SubFolderCardProps> = (props) => { const shouldHighlight = isNewFolder || isSelected; const highlightedBgRow = getBackgroundRowColor(shouldHighlight, isDarkTheme); - const feedMatches = folderName.match(/feed_(\d+)/); - const { data, isLoading } = useQuery({ - queryKey: ["associatedFeed", folder.data.path], - queryFn: async () => { - const id = feedMatches ? feedMatches[1] : null; - - if (id) { - const client = ChrisAPIClient.getClient(); - const feed = await client.getFeed(Number(id)); - if (!feed) throw new Error("Failed to fetch the feed"); - return feed.data.name; - } - return null; - }, - enabled: feedMatches?.length > 0, - }); - return ( <GridItem xl={3} lg={4} md={6} sm={12} key={folder.data.id}> <FolderContextMenu @@ -173,10 +161,10 @@ export const SubFolderCard: React.FC<SubFolderCardProps> = (props) => { variant="link" style={{ padding: 0 }} > - {!data && !isLoading + {!feedName && !isLoading ? elipses(folderName, 40) - : data - ? elipses(data, 40) + : feedName + ? elipses(feedName, 40) : "Fetching..."} </Button> <div diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index cfe92e872..af0636c74 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -17,6 +17,7 @@ import { Tr, } from "@patternfly/react-table"; import { Drawer, Tag } from "antd"; +import { Skeleton } from "@patternfly/react-core"; import { differenceInSeconds, format } from "date-fns"; import React, { useContext, useEffect, useRef, useState } from "react"; import { useNavigate } from "react-router"; @@ -26,7 +27,10 @@ import { ThemeContext } from "../../DarkTheme/useTheme"; import { formatBytes } from "../../Feeds/utilties"; import FileDetailView from "../../Preview/FileDetailView"; import { OperationContext } from "../context"; -import useLongPress, { getBackgroundRowColor } from "../utils/longpress"; +import useLongPress, { + getBackgroundRowColor, + useAssociatedFeed, +} from "../utils/longpress"; import { FolderContextMenu } from "./ContextMenu"; import { getFileName, getLinkFileName } from "./FileCard"; import { getFolderName } from "./FolderCard"; @@ -50,6 +54,7 @@ const columnNames = { interface RowProps { rowIndex: number; + key: string; resource: | FileBrowserFolder | FileBrowserFolderFile @@ -200,9 +205,25 @@ const BaseRow: React.FC<RowProps> = ({ ); }; -export const FolderRow: React.FC<Omit<RowProps, "type">> = (props) => ( - <BaseRow {...props} type="folder" /> -); +export const FolderRow: React.FC<Omit<RowProps, "type">> = (props) => { + const { data, isLoading } = useAssociatedFeed(props.name); + + if (isLoading) { + return ( + <Tr> + <Skeleton width="100%" /> + </Tr> + ); + } + + return ( + <BaseRow + {...props} + name={data ? data : props.name} // Example of adding feed info to the row name + type="folder" + /> + ); +}; export const FileRow: React.FC<Omit<RowProps, "type">> = (props) => ( <BaseRow {...props} type="file" /> diff --git a/src/components/NewLibrary/utils/longpress.tsx b/src/components/NewLibrary/utils/longpress.tsx index 6498db781..20d8fd53e 100644 --- a/src/components/NewLibrary/utils/longpress.tsx +++ b/src/components/NewLibrary/utils/longpress.tsx @@ -5,6 +5,7 @@ import type { FileBrowserFolderLinkFile, } from "@fnndsc/chrisapi"; import { Button, Tooltip } from "@patternfly/react-core"; +import { useQuery } from "@tanstack/react-query"; import { useRef, useState } from "react"; import { useDispatch } from "react-redux"; import { useNavigate } from "react-router"; @@ -222,3 +223,22 @@ export const fetchFeedForPath = async (path: string): Promise<Feed | null> => { } return null; }; + +export const useAssociatedFeed = (folderPath: string) => { + const feedMatches = folderPath.match(/feed_(\d+)/); + + return useQuery({ + queryKey: ["associatedFeed", folderPath], + queryFn: async () => { + const id = feedMatches ? feedMatches[1] : null; + if (id) { + const client = ChrisAPIClient.getClient(); + const feed = await client.getFeed(Number(id)); + if (!feed) throw new Error("Failed to fetch the feed"); + return feed.data.name; + } + return null; + }, + enabled: Boolean(feedMatches?.length), + }); +}; From e87c2ea7e7baf641f40825f90ca1148e78ebf3ba Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 6 Sep 2024 11:18:18 -0400 Subject: [PATCH 175/337] fix: Fix the sorting of feeds according to the sizes --- src/api/model.ts | 2 +- src/components/Feeds/FeedListView.tsx | 12 +++++++++--- src/components/Feeds/utilties.ts | 6 +++--- 3 files changed, 13 insertions(+), 7 deletions(-) diff --git a/src/api/model.ts b/src/api/model.ts index 85725f9ee..7ccb51dcf 100644 --- a/src/api/model.ts +++ b/src/api/model.ts @@ -186,7 +186,7 @@ export const fileViewerMap: any = { jpg: "ImageDisplay", jpeg: "ImageDisplay", gif: "ImageDisplay", - dcm: "NiiVueDisplay", + dcm: "DcmDisplay", default: "CatchallDisplay", nii: "NiiVueDisplay", gz: "CatchallDisplay", diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 6498731b0..d1308d372 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -37,7 +37,7 @@ import { PipelineProvider } from "../PipelinesCopy/context"; import WrapperConnect from "../Wrapper"; import FeedSearch from "./FeedsSearch"; import { useFeedListData } from "./useFeedListData"; -import { getPluginInstanceDetails } from "./utilties"; +import { formatBytes, getPluginInstanceDetails } from "./utilties"; const { Paragraph } = Typography; interface ColumnDefinition { @@ -85,7 +85,7 @@ const COLUMN_DEFINITIONS: ColumnDefinition[] = [ comparator: (_a, _b, detailsA, detailsB) => { const sizeA = detailsA?.size || "0"; const sizeB = detailsB?.size || "0"; - return sizeA.localeCompare(sizeB); + return sizeA - sizeB; }, }, { @@ -431,7 +431,13 @@ const TableRow: React.FC<TableRowProps> = ({ </Td> <Td dataLabel="creator">{feed.data.owner_username}</Td> <Td dataLabel="runtime">{details?.time}</Td> - <Td dataLabel="size">{details?.size}</Td> + <Td dataLabel="size"> + {details?.size ? ( + formatBytes(details?.size, 0) + ) : ( + <Skeleton width="100%" height="40px" /> + )} + </Td> <Td dataLabel="status"> <DonutUtilization details={details} /> </Td> diff --git a/src/components/Feeds/utilties.ts b/src/components/Feeds/utilties.ts index 4ab07db01..e9d4a17f7 100644 --- a/src/components/Feeds/utilties.ts +++ b/src/components/Feeds/utilties.ts @@ -162,7 +162,7 @@ type PluginInstanceStatus = | "finishedSuccessfully"; interface PluginInstanceDetails { - size: string; + size: number; progress: number; time: string; error: boolean; @@ -183,7 +183,7 @@ export const getPluginInstanceDetails = async ( feed: Feed, ): Promise<PluginInstanceDetails> => { const details: PluginInstanceDetails = { - size: "", + size: 0, progress: 0, time: "", error: false, @@ -236,7 +236,7 @@ export const getPluginInstanceDetails = async ( const progressPercentage = (completedMilestones / totalMilestones) * 100; - details.size = formatBytes(totalSize, 0); + details.size = totalSize; details.progress = Math.floor(progressPercentage); details.time = convertMsToHM(totalRunTime); details.error = error; From e7b6339d23adb2d08d11f1deabd83f53ffbf5766 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 6 Sep 2024 12:06:52 -0400 Subject: [PATCH 176/337] fix: Fix the regression in status tracking while adding a node --- src/store/pluginInstance/pluginInstanceSlice.ts | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/src/store/pluginInstance/pluginInstanceSlice.ts b/src/store/pluginInstance/pluginInstanceSlice.ts index 9e5998cf0..48c1cdbc3 100644 --- a/src/store/pluginInstance/pluginInstanceSlice.ts +++ b/src/store/pluginInstance/pluginInstanceSlice.ts @@ -68,6 +68,12 @@ export const addNode = createAsyncThunk< try { const pluginInstances = [...nodes, pluginItem]; dispatch(getSelectedPlugin(pluginItem)); + dispatch( + getPluginInstanceStatusRequest({ + selected: pluginItem, + pluginInstances, + }), + ); return { selected: pluginItem, pluginInstances }; } catch (error) { return rejectWithValue("Failed to add node."); From 2ac12419888b74323ffb9ccb9fbe9a86cdc0fd6c Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 6 Sep 2024 13:13:54 -0400 Subject: [PATCH 177/337] fix: Fix quoting of strings in the terminal --- src/api/common.ts | 17 ++++++++++++++ src/components/AddNode/GuidedConfig.tsx | 26 ++++++++++++---------- src/components/NodeDetails/NodeDetails.tsx | 9 ++++---- 3 files changed, 35 insertions(+), 17 deletions(-) diff --git a/src/api/common.ts b/src/api/common.ts index 2096dc7e4..2aad5c2cb 100644 --- a/src/api/common.ts +++ b/src/api/common.ts @@ -495,11 +495,28 @@ export function needsQuoting(value: string) { return false; } + // Avoid shlex.quote if the string contains an apostrophe + + if (value.includes("'")) { + return true; + } + // If not quoted, check if quoting is necessary const quotedValue = quote(value); return quotedValue !== value; } +// Custom quote function to avoid mangling strings with apostrophes +export function customQuote(value: string) { + // If the string contains a single quote, wrap it in double quotes + if (value.includes("'")) { + return `"${value}"`; // Wrap in double quotes + } + + // Otherwise, fall back to shlex.quote for safe quoting + return quote(value); +} + export const getFileName = (name: string) => { return name.split("/").slice(-1).join(""); }; diff --git a/src/components/AddNode/GuidedConfig.tsx b/src/components/AddNode/GuidedConfig.tsx index 961ace799..78ca490cc 100644 --- a/src/components/AddNode/GuidedConfig.tsx +++ b/src/components/AddNode/GuidedConfig.tsx @@ -30,13 +30,17 @@ import { useMutation } from "@tanstack/react-query"; import { isEmpty } from "lodash"; import React, { useContext, useEffect, useState } from "react"; import { useDispatch } from "react-redux"; -import { quote } from "shlex"; import { v4 } from "uuid"; -import { catchError, fetchResource, needsQuoting } from "../../api/common"; +import { + catchError, + customQuote, + fetchResource, + needsQuoting, +} from "../../api/common"; import type { AppDispatch } from "../../store/configureStore"; import { useTypedSelector } from "../../store/hooks"; import { fetchParamsAndComputeEnv } from "../../store/plugin/pluginSlice"; -import { Alert, Spin } from "../Antd"; +import { Alert } from "../Antd"; import { ClipboardCopyFixed, ErrorAlert } from "../Common"; import ComputeEnvironments from "./ComputeEnvironment"; import RequiredParam from "./RequiredParam"; @@ -367,7 +371,9 @@ const CheckboxComponent = () => { const { param_name, type, value } = parameter.data; if (paramsRequiredFetched?.[param_name]) { const quotedValue = - type === "string" && needsQuoting(value) ? quote(value) : value; + type === "string" && needsQuoting(value) + ? customQuote(value) + : value; const [id, flag] = paramsRequiredFetched[param_name]; requiredInput[id] = { value: quotedValue, @@ -377,7 +383,9 @@ const CheckboxComponent = () => { }; } else if (paramsDropdownFetched) { const quotedValue = - type === "string" && needsQuoting(value) ? quote(value) : value; + type === "string" && needsQuoting(value) + ? customQuote(value) + : value; const flag = paramsDropdownFetched[param_name]; dropdownInput[v4()] = { @@ -407,7 +415,7 @@ const CheckboxComponent = () => { } }; - const { isPending, isError, error, mutate, reset } = useMutation({ + const { isError, error, mutate, reset } = useMutation({ mutationFn: () => handleCheckboxChange(), }); @@ -449,12 +457,6 @@ const CheckboxComponent = () => { }); }} /> - {isPending && ( - <div style={{ marginTop: "0.75em" }}> - <Spin />{" "} - <span style={{ marginLeft: "0.75em" }}>Contructing the form...</span> - </div> - )} {isError && <Alert type="error" description={error.message} />} </> ); diff --git a/src/components/NodeDetails/NodeDetails.tsx b/src/components/NodeDetails/NodeDetails.tsx index 4cfc19656..b931704c5 100644 --- a/src/components/NodeDetails/NodeDetails.tsx +++ b/src/components/NodeDetails/NodeDetails.tsx @@ -1,4 +1,4 @@ -import { +import type { Plugin, PluginInstance, PluginInstanceDescendantList, @@ -10,11 +10,10 @@ import { Grid, GridItem, } from "@patternfly/react-core"; -import React, { Fragment, ReactNode } from "react"; +import React, { Fragment, type ReactNode } from "react"; import { ErrorBoundary } from "react-error-boundary"; import { useNavigate } from "react-router"; -import { quote } from "shlex"; -import { needsQuoting } from "../../api/common"; +import { needsQuoting, customQuote } from "../../api/common"; import { useTypedSelector } from "../../store/hooks"; import { SpinContainer } from "../Common"; import { isPlVisualDataset } from "../DatasetRedirect/getDatasets"; @@ -301,7 +300,7 @@ function getCommand( const value = instanceParameters[i].data.value; const safeValue = - isString && needsQuoting(value) ? quote(value) : value; + isString && needsQuoting(value) ? customQuote(value) : value; modifiedParams.push({ name: pluginParameters[j].data.flag, From 06afcb322455c404df8e90226ed9f11b751dd76b Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 6 Sep 2024 14:56:44 -0400 Subject: [PATCH 178/337] feat: Disable the 'New Folder' menu item in the feeds table --- src/components/FeedOutputBrowser/FileBrowser.tsx | 16 +++++++--------- .../NewLibrary/components/Operations.tsx | 10 +++++++--- 2 files changed, 14 insertions(+), 12 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 34deb0331..3cec9d8c8 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -16,12 +16,8 @@ import { Tooltip, } from "@patternfly/react-core"; import { Table, Tbody, Th, Thead, Tr } from "@patternfly/react-table"; -import { useContext, useEffect } from "react"; +import { useEffect } from "react"; import { useDispatch } from "react-redux"; -import { - getFileName, - getLinkFileName, -} from "../NewLibrary/components/FileCard"; import { setFilePreviewPanel } from "../../store/drawer/drawerSlice"; import { clearSelectedFile, @@ -29,20 +25,22 @@ import { } from "../../store/explorer/explorerSlice"; import useDownload, { useTypedSelector } from "../../store/hooks"; import { notification } from "../Antd"; -import { ClipboardCopyContainer, SpinContainer } from "../Common"; -import { ThemeContext } from "../DarkTheme/useTheme"; +import { ClipboardCopyContainer } from "../Common"; import { DrawerActionButton } from "../Feeds/DrawerUtils"; import { handleMaximize, handleMinimize } from "../Feeds/utilties"; import { HomeIcon } from "../Icons"; +import { + getFileName, + getLinkFileName, +} from "../NewLibrary/components/FileCard"; import { getFolderName } from "../NewLibrary/components/FolderCard"; import { - FolderRow, FileRow, + FolderRow, LinkRow, } from "../NewLibrary/components/LibraryTable"; import Operations from "../NewLibrary/components/Operations"; import { OperationContext } from "../NewLibrary/context"; -import useLongPress from "../NewLibrary/utils/longpress"; import FileDetailView from "../Preview/FileDetailView"; import XtkViewer from "../XtkViewer/XtkViewer"; import type { FileBrowserProps } from "./types"; diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 5aeb30679..0339ce00e 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -60,9 +60,9 @@ interface OperationProps { } const OPERATION_ITEMS = [ - { key: "newFolder", label: "New Folder" }, - { key: "fileUpload", label: "File Upload" }, - { key: "folderUpload", label: "Folder Upload" }, + { key: "newFolder", label: "New Folder", disabled: false }, + { key: "fileUpload", label: "File Upload", disabled: false }, + { key: "folderUpload", label: "Folder Upload", disabled: false }, ]; const Operations = ({ @@ -77,6 +77,10 @@ const Operations = ({ const isFeedsTable = matchPath({ path: "/feeds", end: true }, location.pathname) !== null; // This checks if the path matches and returns true or false + if (isFeedsTable) { + OPERATION_ITEMS[0].disabled = true; + } + const { modalState, userRelatedError, From 5cb603f3d0de60cc1bd662bbacdeaa644ec356a9 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 6 Sep 2024 15:33:58 -0400 Subject: [PATCH 179/337] feat: Resize the terminal dynamically --- src/components/FeedTree/useSize.tsx | 14 ++--- src/components/NodeDetails/LogTerminal.tsx | 59 ++++++++++++++++++++-- 2 files changed, 64 insertions(+), 9 deletions(-) diff --git a/src/components/FeedTree/useSize.tsx b/src/components/FeedTree/useSize.tsx index dd7f6fbac..b3d323365 100644 --- a/src/components/FeedTree/useSize.tsx +++ b/src/components/FeedTree/useSize.tsx @@ -1,20 +1,22 @@ -import React, { RefObject, MutableRefObject } from "react"; +import React, { type RefObject, type MutableRefObject } from "react"; import useResizeObserver from "@react-hook/resize-observer"; const useSize = ( target: | MutableRefObject<HTMLDivElement | SVGSVGElement | null> - | RefObject<SVGGElement>, + | RefObject<SVGGElement | HTMLDivElement | SVGSVGElement>, ) => { - const [size, setSize] = React.useState(); + // size is of type DOMRectReadOnly or undefined initially + const [size, setSize] = React.useState<DOMRectReadOnly | undefined>(); React.useLayoutEffect(() => { if (target.current) { - //@ts-ignore - setSize(target.current.getBoundingClientRect()); + // Safely access getBoundingClientRect() method + const rect = target.current.getBoundingClientRect(); + setSize(rect); } }, [target]); - //@ts-ignore + useResizeObserver(target, (entry) => setSize(entry.contentRect)); return size; diff --git a/src/components/NodeDetails/LogTerminal.tsx b/src/components/NodeDetails/LogTerminal.tsx index d47cee718..66e103496 100644 --- a/src/components/NodeDetails/LogTerminal.tsx +++ b/src/components/NodeDetails/LogTerminal.tsx @@ -1,14 +1,67 @@ import { LogViewer } from "@patternfly/react-log-viewer"; +import { useRef, useEffect, useState } from "react"; +import useSize from "../FeedTree/useSize"; +import { useTypedSelector } from "../../store/hooks"; type LogTerminalProps = { text: string; }; const LogTerminal = ({ text }: LogTerminalProps) => { + const divRef = useRef<HTMLDivElement>(null); + const size = useSize(divRef); + const isTerminalMaximized = useTypedSelector( + (state) => state.drawers.node.maximized, + ); + const [terminalSize, setTerminalSize] = useState({ + width: "100%", + height: "100%", + }); + + const handleResize = () => { + if (divRef.current && size) { + const parentWidth = size.width; + const parentHeight = size.height; + const element = document.getElementById("log-viewer"); + + if (element) { + setTerminalSize({ + width: `${parentWidth}px`, + height: `${parentHeight}px`, + }); + } + } + }; + + useEffect(() => { + // Call handleResize whenever window resizes + window.addEventListener("resize", handleResize); + + // Initial resize logic when component mounts + handleResize(); + + // Cleanup on unmount + return () => { + window.removeEventListener("resize", handleResize); + }; + }, [size, isTerminalMaximized]); // Ensure the effect runs when size or maximized state changes + return ( - <> - <LogViewer hasLineNumbers={false} height={"100%"} data={text} /> - </> + <div + id="log-viewer" + ref={divRef} + style={{ + height: "100%", + width: "100%", + }} + > + <LogViewer + height={terminalSize.height} + width={terminalSize.width} + hasLineNumbers={false} + data={text} + /> + </div> ); }; From e41c6ad45f014c8318272c8acf9b052852fda29a Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 6 Sep 2024 16:19:50 -0400 Subject: [PATCH 180/337] fix: Update the Node Details Panel to reflect the feed author correctly --- src/components/NodeDetails/NodeDetails.tsx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/components/NodeDetails/NodeDetails.tsx b/src/components/NodeDetails/NodeDetails.tsx index b931704c5..9a3f81679 100644 --- a/src/components/NodeDetails/NodeDetails.tsx +++ b/src/components/NodeDetails/NodeDetails.tsx @@ -154,7 +154,7 @@ const NodeDetails: React.FC = () => { > <Grid className="node-details__grid"> {renderGridItem("Feed Name", feed?.data?.name)} - {renderGridItem("Feed Author", feed?.data.creator_username)} + {renderGridItem("Feed Author", feed?.data.owner_username)} {selectedPlugin.data.previous_id && renderGridItem( "Parent Node ID", From 6f64fadc46dba55b432877d393ec8b574d9dc581 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Wed, 11 Sep 2024 22:24:28 -0400 Subject: [PATCH 181/337] Update miniChRIS to CUBE version 6 --- testing/getDicoms.mjs | 2 +- testing/miniChRIS | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/testing/getDicoms.mjs b/testing/getDicoms.mjs index c38b4119f..10f8e8334 100755 --- a/testing/getDicoms.mjs +++ b/testing/getDicoms.mjs @@ -5,7 +5,7 @@ import * as childProcess from "node:child_process"; import * as os from "node:os"; import * as path from "node:path"; -const UTILS_IMAGE = "ghcr.io/fnndsc/utils:fc56615"; +const UTILS_IMAGE = "ghcr.io/fnndsc/utils:7c65939"; function main() { runUtils("testing/sample_dicoms", ["make", "neuro"]); diff --git a/testing/miniChRIS b/testing/miniChRIS index 53f0d1a40..a70318e5c 160000 --- a/testing/miniChRIS +++ b/testing/miniChRIS @@ -1 +1 @@ -Subproject commit 53f0d1a40f9c4ac3d214af99d11996fc545f237e +Subproject commit a70318e5c6c6ce3d5e9bba82302ba67d490bd0f8 From a93f3dbe1970f861bca779b51b7dac3e74fa716c Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Wed, 11 Sep 2024 22:26:50 -0400 Subject: [PATCH 182/337] Disable end-to-end testing in GHA --- .github/workflows/test.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index d10262d6a..bae86034d 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -33,6 +33,7 @@ jobs: test-public: name: Tests (public testing server) runs-on: ubuntu-22.04 + if: false # FIXME disabled for now because tests not updated for CUBE version 6 steps: - name: Checkout uses: actions/checkout@v4 @@ -72,6 +73,7 @@ jobs: test-local: name: Tests (local testing server) runs-on: ubuntu-22.04 + if: false # FIXME disabled for now because tests not updated for CUBE version 6 steps: - name: Checkout uses: actions/checkout@v4 From 12d13fe0f8902b22d4ccfda72d50f08c03de62a3 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 12 Sep 2024 10:37:25 -0400 Subject: [PATCH 183/337] feat: Fix the owner_username field in the Library Table --- src/components/CreateFeed/CreateFeed.tsx | 2 +- src/components/CreateFeed/DataPacks.tsx | 4 ++-- src/components/NewLibrary/components/FolderCard.tsx | 2 -- src/components/NewLibrary/components/LibraryTable.tsx | 5 ++--- 4 files changed, 5 insertions(+), 8 deletions(-) diff --git a/src/components/CreateFeed/CreateFeed.tsx b/src/components/CreateFeed/CreateFeed.tsx index 87e36e2eb..f02ec3039 100644 --- a/src/components/CreateFeed/CreateFeed.tsx +++ b/src/components/CreateFeed/CreateFeed.tsx @@ -8,13 +8,13 @@ import { WizardStep, } from "@patternfly/react-core"; import { useQueryClient } from "@tanstack/react-query"; -import { notification } from "../Antd"; import * as React from "react"; import { useContext } from "react"; import { catchError } from "../../api/common"; import { MainRouterContext } from "../../routes"; import { useTypedSelector } from "../../store/hooks"; import { AddNodeContext } from "../AddNode/context"; +import { notification } from "../Antd"; import { CodeBranchIcon } from "../Icons"; import PipelinesCopy from "../PipelinesCopy"; import { PipelineContext } from "../PipelinesCopy/context"; diff --git a/src/components/CreateFeed/DataPacks.tsx b/src/components/CreateFeed/DataPacks.tsx index 7134fd66b..5d2c6fa88 100644 --- a/src/components/CreateFeed/DataPacks.tsx +++ b/src/components/CreateFeed/DataPacks.tsx @@ -135,11 +135,11 @@ const DataPacks = ({ next }: { next: () => any }) => { ) { return; } - if (e.code == "Enter" && e.target.closest("DIV.pf-c-radio")) { + if (e.code === "Enter" && e.target.closest("DIV.pf-c-radio")) { e.preventDefault(); if (pluginMeta === undefined) handleOnChange(true, plugin); onNext(); - } else if (pluginMeta && e.code == "ArrowRight") { + } else if (pluginMeta && e.code === "ArrowRight") { onNext(); } else if (e.code === "ArrowLeft") { onBack(); diff --git a/src/components/NewLibrary/components/FolderCard.tsx b/src/components/NewLibrary/components/FolderCard.tsx index d50f1f6f2..6b1f0bc87 100644 --- a/src/components/NewLibrary/components/FolderCard.tsx +++ b/src/components/NewLibrary/components/FolderCard.tsx @@ -8,12 +8,10 @@ import { Split, SplitItem, } from "@patternfly/react-core"; -import { useQuery } from "@tanstack/react-query"; import { differenceInSeconds, format } from "date-fns"; import { isEmpty } from "lodash"; import { useContext, useEffect, useState } from "react"; import { Fragment } from "react/jsx-runtime"; -import ChrisAPIClient from "../../../api/chrisapiclient"; import { elipses } from "../../../api/common"; import { useTypedSelector } from "../../../store/hooks"; import { ThemeContext } from "../../DarkTheme/useTheme"; diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index af0636c74..cc8be8b07 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -3,7 +3,7 @@ import type { FileBrowserFolderFile, FileBrowserFolderLinkFile, } from "@fnndsc/chrisapi"; -import { Button } from "@patternfly/react-core"; +import { Button, Skeleton } from "@patternfly/react-core"; import { Caption, type ISortBy, @@ -17,7 +17,6 @@ import { Tr, } from "@patternfly/react-table"; import { Drawer, Tag } from "antd"; -import { Skeleton } from "@patternfly/react-core"; import { differenceInSeconds, format } from "date-fns"; import React, { useContext, useEffect, useRef, useState } from "react"; import { useNavigate } from "react-router"; @@ -338,7 +337,7 @@ const LibraryTable: React.FC<TableProps> = ({ resource={resource} name={getFolderName(resource, computedPath)} date={resource.data.creation_date} - owner=" " + owner={resource.data.owner_username} size={0} computedPath={computedPath} handleFolderClick={() => { From 86d54d3bb598955ead2649518678fe8f700d498b Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 12 Sep 2024 10:56:47 -0400 Subject: [PATCH 184/337] chore: Update cornerstone --- package-lock.json | 38 ++++++++++++++++++++++++++++++-------- package.json | 6 +++--- 2 files changed, 33 insertions(+), 11 deletions(-) diff --git a/package-lock.json b/package-lock.json index 2ea23a457..7c85aaf5b 100644 --- a/package-lock.json +++ b/package-lock.json @@ -8,10 +8,10 @@ "name": "chrisui", "version": "0.0.0", "dependencies": { - "@cornerstonejs/core": "^1.82.4", - "@cornerstonejs/dicom-image-loader": "^1.82.4", + "@cornerstonejs/core": "^1.84.4", + "@cornerstonejs/dicom-image-loader": "^1.84.4", "@cornerstonejs/streaming-image-volume-loader": "^1.82.4", - "@cornerstonejs/tools": "^1.82.4", + "@cornerstonejs/tools": "^1.84.4", "@fnndsc/chrisapi": "^1.22.0", "@fontsource/inter": "^5.0.20", "@niivue/niivue": "^0.41.1", @@ -659,6 +659,8 @@ }, "node_modules/@cornerstonejs/codec-charls": { "version": "1.2.3", + "resolved": "https://registry.npmjs.org/@cornerstonejs/codec-charls/-/codec-charls-1.2.3.tgz", + "integrity": "sha512-qKUe6DN0dnGzhhfZLYhH9UZacMcudjxcaLXCrpxJImT/M/PQvZCT2rllu6VGJbWKJWG+dMVV2zmmleZcdJ7/cA==", "license": "MIT", "engines": { "node": ">=0.14" @@ -666,6 +668,8 @@ }, "node_modules/@cornerstonejs/codec-libjpeg-turbo-8bit": { "version": "1.2.2", + "resolved": "https://registry.npmjs.org/@cornerstonejs/codec-libjpeg-turbo-8bit/-/codec-libjpeg-turbo-8bit-1.2.2.tgz", + "integrity": "sha512-aAUMK2958YNpOb/7G6e2/aG7hExTiFTASlMt/v90XA0pRHdWiNg5ny4S5SAju0FbIw4zcMnR0qfY+yW3VG2ivg==", "license": "ISC", "engines": { "node": ">=0.14" @@ -673,6 +677,8 @@ }, "node_modules/@cornerstonejs/codec-openjpeg": { "version": "1.2.4", + "resolved": "https://registry.npmjs.org/@cornerstonejs/codec-openjpeg/-/codec-openjpeg-1.2.4.tgz", + "integrity": "sha512-UT2su6xZZnCPSuWf2ldzKa/2+guQ7BGgfBSKqxanggwJHh48gZqIAzekmsLyJHMMK5YDK+ti+fzvVJhBS3Xi/g==", "license": "MIT", "engines": { "node": ">=0.14" @@ -680,13 +686,17 @@ }, "node_modules/@cornerstonejs/codec-openjph": { "version": "2.4.5", + "resolved": "https://registry.npmjs.org/@cornerstonejs/codec-openjph/-/codec-openjph-2.4.5.tgz", + "integrity": "sha512-MZCUy8VG0VG5Nl1l58+g+kH3LujAzLYTfJqkwpWI2gjSrGXnP6lgwyy4GmPRZWVoS40/B1LDNALK905cNWm+sg==", "license": "MIT", "engines": { "node": ">=0.14" } }, "node_modules/@cornerstonejs/core": { - "version": "1.84.1", + "version": "1.84.4", + "resolved": "https://registry.npmjs.org/@cornerstonejs/core/-/core-1.84.4.tgz", + "integrity": "sha512-+6Sa5EUWVbXqiR/+tHFzzMrMO8V2mAmi1oQt3iiBIm5roXzU++1smsckWgsRdZOgfHhQbHjkdEixlfuMGToiaw==", "license": "MIT", "dependencies": { "@kitware/vtk.js": "30.4.1", @@ -701,14 +711,16 @@ } }, "node_modules/@cornerstonejs/dicom-image-loader": { - "version": "1.84.1", + "version": "1.84.4", + "resolved": "https://registry.npmjs.org/@cornerstonejs/dicom-image-loader/-/dicom-image-loader-1.84.4.tgz", + "integrity": "sha512-IFRKmau82ku0vaqAduc98HcObgCfeyzZdAfQ/HiYA4RfWMZSGJm9DQiZXW+VUzlzim+8HEdwOrKY79AK7GylLg==", "license": "MIT", "dependencies": { "@cornerstonejs/codec-charls": "^1.2.3", "@cornerstonejs/codec-libjpeg-turbo-8bit": "^1.2.2", "@cornerstonejs/codec-openjpeg": "^1.2.2", "@cornerstonejs/codec-openjph": "^2.4.5", - "@cornerstonejs/core": "^1.84.1", + "@cornerstonejs/core": "^1.84.4", "dicom-parser": "^1.8.9", "pako": "^2.0.4", "uuid": "^9.0.0" @@ -716,6 +728,8 @@ }, "node_modules/@cornerstonejs/dicom-image-loader/node_modules/pako": { "version": "2.1.0", + "resolved": "https://registry.npmjs.org/pako/-/pako-2.1.0.tgz", + "integrity": "sha512-w+eufiZ1WuJYgPXbV/PO3NCMEc3xqylkKHzp8bxp1uW4qaSNQUkwmLLEc3kKsfz8lpV1F8Ht3U1Cm+9Srog2ug==", "license": "(MIT AND Zlib)" }, "node_modules/@cornerstonejs/streaming-image-volume-loader": { @@ -731,10 +745,12 @@ } }, "node_modules/@cornerstonejs/tools": { - "version": "1.84.1", + "version": "1.84.4", + "resolved": "https://registry.npmjs.org/@cornerstonejs/tools/-/tools-1.84.4.tgz", + "integrity": "sha512-p2G811Xoez88hhYvIzHqXwsCjT0laLJc0hDREUapxqjcgL8FbKsIq+Pn8pWT2z/eYBcOW5ocXxnTRAs6mFRpuA==", "license": "MIT", "dependencies": { - "@cornerstonejs/core": "^1.84.1", + "@cornerstonejs/core": "^1.84.4", "@icr/polyseg-wasm": "0.4.0", "@types/offscreencanvas": "2019.7.3", "comlink": "^4.4.1", @@ -816,6 +832,8 @@ }, "node_modules/@icr/polyseg-wasm": { "version": "0.4.0", + "resolved": "https://registry.npmjs.org/@icr/polyseg-wasm/-/polyseg-wasm-0.4.0.tgz", + "integrity": "sha512-3sZmiwG8I0NaqPle0L7+V/ZexiR7IjIUFkUsaOoFI9rNuBGyyMMmxAxnCmqcDFtBDk9h+JEYJf6e3NnqlHi/HQ==", "license": "MIT", "engines": { "node": ">=0.14" @@ -1929,6 +1947,8 @@ }, "node_modules/@types/offscreencanvas": { "version": "2019.7.3", + "resolved": "https://registry.npmjs.org/@types/offscreencanvas/-/offscreencanvas-2019.7.3.tgz", + "integrity": "sha512-ieXiYmgSRXUDeOntE1InxjWyvEelZGP63M+cGuquuRLuIKKT1osnkXjxev9B7d1nXSug5vpunx+gNlbVxMlC9A==", "license": "MIT" }, "node_modules/@types/parse-json": { @@ -5040,6 +5060,8 @@ }, "node_modules/lodash.get": { "version": "4.4.2", + "resolved": "https://registry.npmjs.org/lodash.get/-/lodash.get-4.4.2.tgz", + "integrity": "sha512-z+Uw/vLuy6gQe8cfaFWD7p0wVv8fJl3mbzXh33RS+0oW2wvUqiRXiQ69gLWSLpgB5/6sU+r6BlQR0MBILadqTQ==", "license": "MIT" }, "node_modules/loose-envify": { diff --git a/package.json b/package.json index 41cfa20d0..90ac17035 100644 --- a/package.json +++ b/package.json @@ -38,10 +38,10 @@ "print-version": "node printVersion.js" }, "dependencies": { - "@cornerstonejs/core": "^1.82.4", - "@cornerstonejs/dicom-image-loader": "^1.82.4", + "@cornerstonejs/core": "^1.84.4", + "@cornerstonejs/dicom-image-loader": "^1.84.4", "@cornerstonejs/streaming-image-volume-loader": "^1.82.4", - "@cornerstonejs/tools": "^1.82.4", + "@cornerstonejs/tools": "^1.84.4", "@fnndsc/chrisapi": "^1.22.0", "@fontsource/inter": "^5.0.20", "@niivue/niivue": "^0.41.1", From aec814f30ee9d698dfb001fe59f05c167a726214 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 12 Sep 2024 12:26:01 -0400 Subject: [PATCH 185/337] fix: Continous polling in the feed table due to incorrect data handling --- src/components/CreateFeed/utils.ts | 12 +- .../FeedOutputBrowser/FeedOutputBrowser.tsx | 9 +- .../FeedOutputBrowser/FileBrowser.tsx | 42 ++++-- src/components/FeedOutputBrowser/types.ts | 13 +- .../FeedOutputBrowser/useFeedBrowser.tsx | 121 +++++++----------- src/components/Feeds/FeedListView.tsx | 4 +- src/components/Feeds/utilties.ts | 5 +- src/components/NewLibrary/index.tsx | 118 ++++++++--------- 8 files changed, 164 insertions(+), 160 deletions(-) diff --git a/src/components/CreateFeed/utils.ts b/src/components/CreateFeed/utils.ts index a55418407..a2803369f 100644 --- a/src/components/CreateFeed/utils.ts +++ b/src/components/CreateFeed/utils.ts @@ -1,9 +1,9 @@ -import type { PluginMeta, Tag, Pipeline } from "@fnndsc/chrisapi"; +import type { Pipeline, PluginMeta, Tag } from "@fnndsc/chrisapi"; import type { EventDataNode } from "rc-tree/lib/interface"; -import type { DataBreadcrumb } from "./types/feed"; -import { fetchFilesFromAPath } from "../FeedOutputBrowser/useFeedBrowser"; import ChrisAPIClient from "../../api/chrisapiclient"; import { fetchResource, fetchResources } from "../../api/common"; +import { fetchFolders } from "../NewLibrary"; +import type { DataBreadcrumb } from "./types/feed"; export const fetchTagList = async () => { const client = ChrisAPIClient.getClient(); @@ -71,11 +71,11 @@ export const generateTreeNodes = async ( isLeaf: boolean; checkable: boolean; }[] = []; - //@ts-ignore - const { folderFiles, linkFiles, children } = await fetchFilesFromAPath( + + const { subFoldersMap, linkFilesMap, filesMap } = await fetchFolders( treeNode.breadcrumb, ); - const items = [...folderFiles, ...linkFiles, ...children]; + const items = [...subFoldersMap, ...linkFilesMap, ...filesMap]; for (let i = 0; i < items.length; i++) { const item = items[i]; diff --git a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx index 5eca21fb5..9f7bc73ae 100644 --- a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx +++ b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx @@ -5,7 +5,7 @@ import { EmptyStateVariant, Title, } from "@patternfly/react-core"; -import { Alert, Spin } from "../Antd"; +import { Alert } from "../Antd"; import { SpinContainer } from "../Common"; import "./FeedOutputBrowser.css"; import FileBrowser from "./FileBrowser"; @@ -28,6 +28,9 @@ const FeedOutputBrowser: React.FC<FeedOutputBrowserProps> = () => { isError, error, currentPath, + fetchMore, + observerTarget, + handlePagination, } = useFeedBrowser(); return ( <div style={{ height: "100%" }} className="feed-output-browser"> @@ -39,6 +42,10 @@ const FeedOutputBrowser: React.FC<FeedOutputBrowserProps> = () => { handleFileClick={handleFileClick} pluginFilesPayload={pluginFilesPayload} currentPath={currentPath} + fetchMore={fetchMore} + observerTarget={observerTarget} + handlePagination={handlePagination} + isLoading={filesLoading} /> ) : statusTitle && statusTitles.includes(statusTitle) ? ( <FetchFilesLoader title="Plugin executing. Files will be fetched when plugin completes" /> diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 3cec9d8c8..f0cce9bf9 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -64,19 +64,21 @@ const FileBrowser = (props: FileBrowserProps) => { const handleDownloadMutation = useDownload(feed); const [api, contextHolder] = notification.useNotification(); const { isSuccess, isError, error: downloadError } = handleDownloadMutation; - const { pluginFilesPayload, handleFileClick, selected, - currentPath: additionalKey, + observerTarget, + fetchMore, + handlePagination, + isLoading, } = props; const selectedFile = useTypedSelector((state) => state.explorer.selectedFile); const drawerState = useTypedSelector((state) => state.drawers); const username = useTypedSelector((state) => state.user.username); - const { folderFiles, linkFiles, children, path } = pluginFilesPayload; - const breadcrumb = path.split("/"); + const { subFoldersMap, linkFilesMap, filesMap } = pluginFilesPayload; + const breadcrumb = additionalKey.split("/"); const currentPath = `home/${username}/feeds/feed_${feed?.data.id}/${selected?.data.plugin_name}_${selected?.data.id}/data`; useEffect(() => { @@ -203,17 +205,17 @@ const FileBrowser = (props: FileBrowserProps) => { type: OperationContext.FILEBROWSER, additionalKeys: [additionalKey], }} - computedPath={path} + computedPath={additionalKey} folderList={pluginFilesPayload.folderList} /> <div className="file-browser__header"> <div className="file-browser__header--breadcrumbContainer"> - <ClipboardCopyContainer path={path} /> + <ClipboardCopyContainer path={additionalKey} /> <Breadcrumb>{breadcrumb.map(generateBreadcrumb)}</Breadcrumb> </div> <div> - {path !== currentPath && + {additionalKey !== currentPath && selected.data.plugin_type === "fs" && ( <Tooltip content={<span>Go back to the base directory</span>} @@ -240,7 +242,7 @@ const FileBrowser = (props: FileBrowserProps) => { </Tr> </Thead> <Tbody> - {folderFiles.map((resource: FileBrowserFolderFile, index) => { + {filesMap.map((resource: FileBrowserFolderFile, index) => { return ( <FileRow rowIndex={index} @@ -250,7 +252,7 @@ const FileBrowser = (props: FileBrowserProps) => { date={resource.data.creation_date} owner={resource.data.owner_username} size={resource.data.fsize} - computedPath={path} + computedPath={additionalKey} handleFolderClick={() => { return; }} @@ -265,7 +267,7 @@ const FileBrowser = (props: FileBrowserProps) => { /> ); })} - {linkFiles.map( + {linkFilesMap.map( (resource: FileBrowserFolderLinkFile, index) => { return ( <LinkRow @@ -276,7 +278,7 @@ const FileBrowser = (props: FileBrowserProps) => { date={resource.data.creation_date} owner={resource.data.owner_username} size={resource.data.fsize} - computedPath={path} + computedPath={additionalKey} handleFolderClick={() => { return; }} @@ -288,17 +290,17 @@ const FileBrowser = (props: FileBrowserProps) => { }, )} - {children.map((resource: FileBrowserFolder, index) => { + {subFoldersMap.map((resource: FileBrowserFolder, index) => { return ( <FolderRow rowIndex={index} key={resource.data.path} resource={resource} - name={getFolderName(resource, path)} + name={getFolderName(resource, additionalKey)} date={resource.data.creation_date} owner=" " size={0} - computedPath={path} + computedPath={additionalKey} handleFolderClick={() => handleFileClick(resource.data.path) } @@ -310,6 +312,18 @@ const FileBrowser = (props: FileBrowserProps) => { })} </Tbody> </Table> + {fetchMore && !isLoading && ( + <Button onClick={handlePagination} variant="link"> + Load more data... + </Button> + )} + <div + style={{ + height: "1px", // Ensure it's visible to the observer + marginTop: "10px", // Ensure it's not blocked by other content + }} + ref={observerTarget} + /> </DrawerContentBody> )} </DrawerContent> diff --git a/src/components/FeedOutputBrowser/types.ts b/src/components/FeedOutputBrowser/types.ts index cfc997f95..bbd087d72 100644 --- a/src/components/FeedOutputBrowser/types.ts +++ b/src/components/FeedOutputBrowser/types.ts @@ -1,4 +1,5 @@ import type { + FileBrowserFolder, FileBrowserFolderFile, FileBrowserFolderLinkFile, FileBrowserFolderList, @@ -7,19 +8,21 @@ import type { import type { DataNode } from "../../store/explorer/types"; export interface FilesPayload { - folderFiles: FileBrowserFolderFile[]; - children: any[]; - linkFiles: FileBrowserFolderLinkFile[]; + filesMap: FileBrowserFolderFile[]; + subFoldersMap: FileBrowserFolder[]; + linkFilesMap: FileBrowserFolderLinkFile[]; folderList?: FileBrowserFolderList; - path: string; } export interface FileBrowserProps { pluginFilesPayload: FilesPayload; handleFileClick: (path: string) => void; selected: PluginInstance; - currentPath: string; + isLoading: boolean; + handlePagination: () => void; + fetchMore?: boolean; + observerTarget?: React.MutableRefObject<any>; } export interface FileBrowserState { diff --git a/src/components/FeedOutputBrowser/useFeedBrowser.tsx b/src/components/FeedOutputBrowser/useFeedBrowser.tsx index 3d134a91a..71ccc03bc 100644 --- a/src/components/FeedOutputBrowser/useFeedBrowser.tsx +++ b/src/components/FeedOutputBrowser/useFeedBrowser.tsx @@ -1,13 +1,7 @@ -import type { - FileBrowserFolderFile, - FileBrowserFolderLinkFile, -} from "@fnndsc/chrisapi"; -import { useQuery } from "@tanstack/react-query"; -import React from "react"; -import ChrisAPIClient from "../../api/chrisapiclient"; -import { catchError, fetchResource } from "../../api/common"; +import { keepPreviousData, useQuery } from "@tanstack/react-query"; +import { useEffect, useRef, useState } from "react"; import { useTypedSelector } from "../../store/hooks"; -import type { FilesPayload } from "./types"; +import { fetchFolders } from "../NewLibrary"; const status = ["finishedSuccessfully", "finishedWithError", "cancelled"]; @@ -19,67 +13,11 @@ const getInitialDownloadState = () => ({ fetchingFiles: false, }); -export const fetchFilesFromAPath = async ( - path: string, -): Promise<FilesPayload> => { - const client = ChrisAPIClient.getClient(); - const foldersList = await client.getFileBrowserFolders({ - path, - }); - - const folders = foldersList.getItems(); - - if (folders) { - const folder = folders[0]; - if (folder) { - const pagination = { limit: 100, offset: 0 }; - const fetchChildren = folder.getChildren; - const boundChildren = fetchChildren.bind(folder); - - try { - const { resource: children } = await fetchResource( - pagination, - boundChildren, - ); - const linkFilesFn = folder.getLinkFiles; - const boundLinkFilesFn = linkFilesFn.bind(folder); - const { resource: linkFiles } = - await fetchResource<FileBrowserFolderLinkFile>( - pagination, - boundLinkFilesFn, - ); - const filesFn = folder.getFiles; - const boundFilesFn = filesFn.bind(folder); - const { resource: folderFiles } = - await fetchResource<FileBrowserFolderFile>(pagination, boundFilesFn); - - return { - folderFiles: folderFiles, - linkFiles: linkFiles, - children: children, - folderList: foldersList, - path, - }; - } catch (error) { - const errorMessage = catchError(error).error_message; - throw new Error(errorMessage); - } - } - } - - return { - folderFiles: [], - linkFiles: [], - children: [], - folderList: undefined, - path, - }; -}; - export const useFeedBrowser = () => { const drawerState = useTypedSelector((state) => state.drawers); - const [download, setDownload] = React.useState(getInitialDownloadState); - const [currentPath, setCurrentPath] = React.useState(""); + const [download, setDownload] = useState(getInitialDownloadState); + const [currentPath, setCurrentPath] = useState(""); + const [pageNumber, setPageNumber] = useState(1); const pluginInstances = useTypedSelector( (state) => state.instance.pluginInstances, @@ -102,7 +40,7 @@ export const useFeedBrowser = () => { (statusTitle && status.includes(statusTitle)) ); - const queryKey = ["pluginFiles", currentPath]; + const queryKey = ["pluginFiles", currentPath, pageNumber]; const { data: pluginFilesPayload, @@ -111,11 +49,47 @@ export const useFeedBrowser = () => { error, } = useQuery({ queryKey: queryKey, - queryFn: () => fetchFilesFromAPath(currentPath), + queryFn: () => fetchFolders(currentPath, pageNumber), enabled: !!selected && !!currentPath && finished, + placeholderData: keepPreviousData, + structuralSharing: true, }); - React.useEffect(() => { + // Handle pagination by incrementing the page number + const handlePagination = () => { + setPageNumber((prevState) => prevState + 1); + }; + + const observerTarget = useRef(null); + + const fetchMore = + pluginFilesPayload?.foldersPagination.hasNextPage || + pluginFilesPayload?.filesPagination.hasNextPage || + pluginFilesPayload?.linksPagination.hasNextPage; + + // Set up an intersection observer to load more data when the user scrolls to the bottom of the page + useEffect(() => { + const observer = new IntersectionObserver( + (entries) => { + if (entries[0].isIntersecting && fetchMore) { + handlePagination(); + } + }, + { threshold: 0.5 }, + ); + + if (observerTarget.current) { + observer.observe(observerTarget.current); + } + + return () => { + if (observerTarget.current) { + observer.unobserve(observerTarget.current); + } + }; + }, [fetchMore]); + + useEffect(() => { if ((statusTitle && status.includes(statusTitle)) || finished) { // User is trying to download a file before it is available if (download.error) { @@ -131,7 +105,7 @@ export const useFeedBrowser = () => { } }, [finished, pluginFilesPayload, statusTitle, download.error]); - React.useEffect(() => { + useEffect(() => { setCurrentPath(selected?.data.output_path); }, [selected]); @@ -154,5 +128,8 @@ export const useFeedBrowser = () => { filesStatus: drawerState.files, previewStatus: drawerState.preview, currentPath, + observerTarget, + fetchMore, + handlePagination, }; }; diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index d1308d372..cd64786c6 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -117,7 +117,9 @@ const TableSelectable: React.FC = () => { return { [feed.data.id]: { details: res } }; }, refetchInterval: (data: any) => { - const details = data?.[feed.data.id]?.details; + const state = data.state.data; + const details = state?.[feed.data.id]?.details; + if (!details) return false; if (details?.progress === 100 || details?.error === true) { return false; // Stop polling } diff --git a/src/components/Feeds/utilties.ts b/src/components/Feeds/utilties.ts index e9d4a17f7..86b0b9156 100644 --- a/src/components/Feeds/utilties.ts +++ b/src/components/Feeds/utilties.ts @@ -4,13 +4,13 @@ import type { } from "../../store/drawer/drawerSlice"; import { setDrawerState } from "../../store/drawer/drawerSlice"; -import ChrisAPIClient from "../../api/chrisapiclient"; import type { Feed, - PublicFeedList, FeedList, PluginInstance, + PublicFeedList, } from "@fnndsc/chrisapi"; +import ChrisAPIClient from "../../api/chrisapiclient"; import { fetchResource } from "../../api/common"; export const handleDrawerActions = ( @@ -182,6 +182,7 @@ const LOOKUP: Record<PluginInstanceStatus, number> = { export const getPluginInstanceDetails = async ( feed: Feed, ): Promise<PluginInstanceDetails> => { + console.log("getplugininstace called"); const details: PluginInstanceDetails = { size: 0, progress: 0, diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index 8c328779b..f6934879b 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -20,75 +20,75 @@ import LibraryTable from "./components/LibraryTable"; import Operations from "./components/Operations"; import { OperationContext } from "./context"; -const NewLibrary = () => { - // Fetch folders from the server - async function fetchFolders(computedPath: string, pageNumber: number) { - const client = ChrisAPIClient.getClient(); - await client.setUrls(); - const pagination = { - limit: pageNumber * 50, - offset: 0, - }; +// Fetch folders from the server +export async function fetchFolders(computedPath: string, pageNumber?: number) { + const client = ChrisAPIClient.getClient(); + await client.setUrls(); + const pagination = { + limit: pageNumber ? pageNumber * 50 : 100, + offset: 0, + }; - try { - const folderList = await client.getFileBrowserFolders({ - path: computedPath, - }); + try { + const folderList = await client.getFileBrowserFolders({ + path: computedPath, + }); - const folders = folderList.getItems(); - let subFoldersMap: FileBrowserFolder[] = []; - let linkFilesMap: FileBrowserFolderLinkFile[] = []; - let filesMap: FileBrowserFolderFile[] = []; - const initialPaginateValue = { - totalCount: 0, - hasNextPage: false, - }; - let filesPagination = initialPaginateValue; - let foldersPagination = initialPaginateValue; - let linksPagination = initialPaginateValue; + const folders = folderList.getItems(); + let subFoldersMap: FileBrowserFolder[] = []; + let linkFilesMap: FileBrowserFolderLinkFile[] = []; + let filesMap: FileBrowserFolderFile[] = []; + const initialPaginateValue = { + totalCount: 0, + hasNextPage: false, + }; + let filesPagination = initialPaginateValue; + let foldersPagination = initialPaginateValue; + let linksPagination = initialPaginateValue; - if (folders) { - const folder = folders[0]; + if (folders) { + const folder = folders[0]; - if (folder) { - const children = await folder.getChildren(pagination); - const linkFiles = await folder.getLinkFiles(pagination); - const folderFiles = await folder.getFiles(pagination); + if (folder) { + const children = await folder.getChildren(pagination); + const linkFiles = await folder.getLinkFiles(pagination); + const folderFiles = await folder.getFiles(pagination); - subFoldersMap = children.getItems(); - filesMap = folderFiles.getItems(); - linkFilesMap = linkFiles.getItems(); + subFoldersMap = children.getItems(); + filesMap = folderFiles.getItems(); + linkFilesMap = linkFiles.getItems(); - foldersPagination = { - totalCount: children.totalCount, - hasNextPage: children.hasNextPage, - }; - linksPagination = { - totalCount: linkFiles.totalCount, - hasNextPage: linkFiles.hasNextPage, - }; - filesPagination = { - totalCount: folderFiles.totalCount, - hasNextPage: folderFiles.hasNextPage, - }; - } + foldersPagination = { + totalCount: children.totalCount, + hasNextPage: children.hasNextPage, + }; + linksPagination = { + totalCount: linkFiles.totalCount, + hasNextPage: linkFiles.hasNextPage, + }; + filesPagination = { + totalCount: folderFiles.totalCount, + hasNextPage: folderFiles.hasNextPage, + }; } - - return { - subFoldersMap, - linkFilesMap, - filesMap, - filesPagination, - foldersPagination, - linksPagination, - folderList, // return folderList as you can make a post request to this resource to create a new folder - }; - } catch (e) { - // biome-ignore lint/complexity/noUselessCatch: <explanation> - throw e; } + + return { + subFoldersMap, + linkFilesMap, + filesMap, + filesPagination, + foldersPagination, + linksPagination, + folderList, // return folderList as you can make a post request to this resource to create a new folder + }; + } catch (e) { + // biome-ignore lint/complexity/noUselessCatch: <explanation> + throw e; } +} +const NewLibrary = () => { const { pathname } = useLocation(); const navigate = useNavigate(); const [pageNumber, setPageNumber] = useState(1); From 4af90d6397c5e540c2587ea6398470e43cc8b815 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 12 Sep 2024 15:15:35 -0400 Subject: [PATCH 186/337] fix: Bug fix in the Library page --- src/components/FeedOutputBrowser/FileBrowser.tsx | 2 +- src/components/Feeds/FeedListView.tsx | 2 +- src/components/Feeds/utilties.ts | 1 - .../NewLibrary/components/Operations.tsx | 15 +++++++++------ src/components/Preview/displays/DcmDisplay.tsx | 1 - 5 files changed, 11 insertions(+), 10 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index f0cce9bf9..0fcb56f7e 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -234,7 +234,7 @@ const FileBrowser = (props: FileBrowserProps) => { <Table variant="compact"> <Thead aria-label="file-browser-table"> <Tr> - <Th /> + <Th aria-label="file-selection-checkbox" /> <Th aria-label="file-name">{columnNames.name}</Th> <Th aria-label="file-creator">{columnNames.created}</Th> <Th aria-label="file-owner">{columnNames.creator}</Th> diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index cd64786c6..bd8d6892d 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -296,7 +296,7 @@ const TableSelectable: React.FC = () => { > <Thead> <Tr> - <Th /> + <Th aria-label="feed-selection-checkbox" /> {COLUMN_DEFINITIONS.map((column, columnIndex) => ( <Th key={column.id} sort={getSortParams(columnIndex)}> {column.label} diff --git a/src/components/Feeds/utilties.ts b/src/components/Feeds/utilties.ts index 86b0b9156..3b5c1ac0e 100644 --- a/src/components/Feeds/utilties.ts +++ b/src/components/Feeds/utilties.ts @@ -182,7 +182,6 @@ const LOOKUP: Record<PluginInstanceStatus, number> = { export const getPluginInstanceDetails = async ( feed: Feed, ): Promise<PluginInstanceDetails> => { - console.log("getplugininstace called"); const details: PluginInstanceDetails = { size: 0, progress: 0, diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index 0339ce00e..ba8de6d0e 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -59,12 +59,6 @@ interface OperationProps { }; } -const OPERATION_ITEMS = [ - { key: "newFolder", label: "New Folder", disabled: false }, - { key: "fileUpload", label: "File Upload", disabled: false }, - { key: "folderUpload", label: "Folder Upload", disabled: false }, -]; - const Operations = ({ origin, computedPath, @@ -76,8 +70,17 @@ const Operations = ({ const dispatch = useDispatch(); const isFeedsTable = matchPath({ path: "/feeds", end: true }, location.pathname) !== null; // This checks if the path matches and returns true or false + const OPERATION_ITEMS = useMemo( + () => [ + { key: "newFolder", label: "New Folder", disabled: false }, + { key: "fileUpload", label: "File Upload", disabled: false }, + { key: "folderUpload", label: "Folder Upload", disabled: false }, + ], + [], + ); if (isFeedsTable) { + console.log("Disabling"); OPERATION_ITEMS[0].disabled = true; } diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index f073a35b2..2ab9b63d4 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -37,7 +37,6 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { IStackViewport | undefined >(); const [renderingEngine, setRenderingEngine] = useState<RenderingEngine>(); - const dicomImageRef = useRef<HTMLDivElement>(null); const uniqueId = `${file?.data.id || v4()}`; const elementId = `cornerstone-element-${uniqueId}`; From 055464fc6686884e1f8f243f072ff823da92ace0 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 12 Sep 2024 17:16:06 -0400 Subject: [PATCH 187/337] feat: Update how previews are loaded --- src/api/filesystem.ts | 32 -------- src/api/model.ts | 11 +-- src/components/Preview/FileDetailView.tsx | 77 ++----------------- .../Preview/displays/CatchallDisplay.tsx | 10 +-- .../Preview/displays/DcmDisplay.tsx | 27 ++++--- .../Preview/displays/IframeDisplay.tsx | 55 ++++++------- .../Preview/displays/ImageDisplay.tsx | 56 ++++++++------ .../Preview/displays/JsonDisplay.tsx | 32 +++----- .../Preview/displays/NiiVueDisplay.tsx | 29 ++++--- .../Preview/displays/PdfDisplay.tsx | 46 +++++++---- .../Preview/displays/TextDisplay.tsx | 66 ++++++---------- .../Preview/displays/VideoDisplay.tsx | 45 ++++++++--- .../Preview/displays/ViewerDisplay.tsx | 4 +- 13 files changed, 214 insertions(+), 276 deletions(-) diff --git a/src/api/filesystem.ts b/src/api/filesystem.ts index 2b5fcf651..12dd4f301 100644 --- a/src/api/filesystem.ts +++ b/src/api/filesystem.ts @@ -1,38 +1,6 @@ import ChrisAPIClient from "./chrisapiclient"; import { fetchResource } from "./common"; -export const ls = async (path?: string) => { - let folders: any[] = []; - let files: any[] = []; - if (!path) return { folders, files }; - - try { - const client = ChrisAPIClient.getClient(); - const uploads = await client.getFileBrowserPaths({ - path, - }); - - folders = uploads.data?.[0].subfolders - ? JSON.parse(uploads.data[0].subfolders) - : []; - const pathList = await client.getFileBrowserPath(path); - - if (pathList) { - const pagination = { - limit: 100, - offset: 0, - }; - const fn = pathList.getFiles; - const boundFn = fn.bind(pathList); - const data = await fetchResource(pagination, boundFn); - files = data.resource; - } - return { folders, files }; - } catch (error) { - return { folders, files }; - } -}; - export const find = async (space?: string | null, search?: string | null) => { const client = ChrisAPIClient.getClient(); if (space === "feeds") { diff --git a/src/api/model.ts b/src/api/model.ts index 7ccb51dcf..733330e76 100644 --- a/src/api/model.ts +++ b/src/api/model.ts @@ -1,9 +1,9 @@ -import _ from "lodash"; import type { FileBrowserFolderFile, PACSFile, PluginInstance, } from "@fnndsc/chrisapi"; +import _ from "lodash"; export interface IActionTypeParam { type: string; @@ -12,6 +12,8 @@ export interface IActionTypeParam { error?: any; } +export type IFileBlob = PACSFile | FileBrowserFolderFile; + export type chrisId = number | string; export type NodeId = chrisId | undefined; @@ -164,13 +166,6 @@ export class TreeModel { } } -export interface IFileBlob { - blob?: Blob; - file?: FileBrowserFolderFile | PACSFile; - url?: string; - fileType: string; -} - // Description: Mapping for Viewer type by file type *Note: Should come from db // File type: Viewer component name export const fileViewerMap: any = { diff --git a/src/components/Preview/FileDetailView.tsx b/src/components/Preview/FileDetailView.tsx index 894faa080..4eb153a82 100644 --- a/src/components/Preview/FileDetailView.tsx +++ b/src/components/Preview/FileDetailView.tsx @@ -8,14 +8,12 @@ import { Tooltip, } from "@patternfly/react-core"; import ResetIcon from "@patternfly/react-icons/dist/esm/icons/history-icon"; -import { useMutation, useQuery } from "@tanstack/react-query"; -import { Alert } from "../Antd"; +import { useMutation } from "@tanstack/react-query"; import * as dicomParser from "dicom-parser"; import React, { Fragment, useCallback, useEffect, - useMemo, useState, type ReactElement, } from "react"; @@ -51,8 +49,6 @@ export interface ActionState { [key: string]: boolean | string; } -const fileTypes = ["nii", "dcm", "fsm", "crv", "smoothwm", "pial", "nii.gz"]; - const FileDetailView = (props: AllProps) => { const [tagInfo, setTagInfo] = useState<any>(); const [actionState, setActionState] = useState<ActionState>({ @@ -131,60 +127,9 @@ const FileDetailView = (props: AllProps) => { }); const { selectedFile, preview } = props; - - const fetchData = useCallback( - async (selectedFile?: FileBrowserFolderFile | PACSFile) => { - if (!selectedFile) { - throw new Error("Please select a file to preview"); - } - const fileName = selectedFile.data.fname; - const fileType = getFileExtension(fileName); - - if (props.isPublic && !fileTypes.includes(fileType)) { - return { - blob: undefined, - file: selectedFile, - fileType, - url: selectedFile?.collection.items[0].links[0].href, - }; - } - - try { - const blob = await selectedFile.getFileBlob(); - - if (blob.size > 500 * 1024 * 1024 && !fileTypes.includes(fileType)) { - throw new Error( - "Unsupported file format. File size exceeds 500mb and can lead to a browser crash if displayed as Text", - ); - } - return { - blob, - file: selectedFile, - fileType, - url: "", - }; - } catch (error: any) { - // biome-ignore lint/complexity/noUselessCatch: <explanation> - throw error; - } - }, - [selectedFile], - ); - - const queryKey = useMemo(() => ["preview", selectedFile], [selectedFile]); - - const { data, isLoading, isError, error } = useQuery({ - queryKey, - queryFn: () => fetchData(selectedFile), - staleTime: 5 * 60 * 1000, // Cache data for 5 minutes - retry: false, - }); - let viewerName = ""; - - if (data?.fileType) { - const { fileType } = data; - + const fileType = getFileExtension(selectedFile?.data.fname); + if (fileType) { if (!fileViewerMap[fileType]) { viewerName = "CatchallDisplay"; } else { @@ -193,8 +138,8 @@ const FileDetailView = (props: AllProps) => { } const handleEvents = (action: string, previouslyActive: string) => { - if (action === "TagInfo" && data) { - mutation.mutate(data.blob); + if (action === "TagInfo" && selectedFile) { + mutation.mutate(selectedFile); } const currentAction = actionState[action]; setActionState({ @@ -248,20 +193,12 @@ const FileDetailView = (props: AllProps) => { /> )} - {isLoading && ( - <SpinContainer title="Please wait as the file is being fetched..." /> - )} - - {isError && ( - <Alert closable type="error" description={error.message} /> - )} - - {data && ( + {selectedFile && ( <ViewerDisplay preview={preview} viewerName={viewerName} - fileItem={data} actionState={actionState} + selectedFile={selectedFile} /> )} </div> diff --git a/src/components/Preview/displays/CatchallDisplay.tsx b/src/components/Preview/displays/CatchallDisplay.tsx index 74e26ff77..7cade1051 100644 --- a/src/components/Preview/displays/CatchallDisplay.tsx +++ b/src/components/Preview/displays/CatchallDisplay.tsx @@ -1,22 +1,22 @@ import { memo } from "react"; import { Alert } from "../../Antd"; -import type { IFileBlob } from "../../../api/model"; +import { getFileExtension, type IFileBlob } from "../../../api/model"; type AllProps = { - fileItem: IFileBlob; + selectedFile?: IFileBlob; }; const CatchallDisplay: React.FunctionComponent<AllProps> = ( props: AllProps, ) => { const noPreviewMessage = () => { - const { fileItem } = props; - const ext = fileItem.fileType ? fileItem.fileType : ""; + const { selectedFile } = props; + const extension = getFileExtension(selectedFile?.data.fname); return ( <Alert type="info" - description={`No preview available for the filetype ${ext}`} + description={`No preview available for the filetype ${extension}`} /> ); }; diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 2ab9b63d4..bd971660a 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -22,23 +22,23 @@ import { removeTools, setUpTooling, } from "./dicomUtils/utils"; -import { _loadImageIntoBuffer } from "./dicomUtils/webImageLoader"; export type DcmImageProps = { - fileItem: IFileBlob; - preview?: string; + selectedFile?: IFileBlob; actionState: ActionState; + preview: string; }; const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { - const { fileItem, preview, actionState } = props; - const { file, blob } = fileItem; + console.log("Props", props); + const { selectedFile, actionState, preview } = props; + const [activeViewport, setActiveViewport] = useState< IStackViewport | undefined >(); const [renderingEngine, setRenderingEngine] = useState<RenderingEngine>(); const dicomImageRef = useRef<HTMLDivElement>(null); - const uniqueId = `${file?.data.id || v4()}`; + const uniqueId = `${selectedFile?.data.id || v4()}`; const elementId = `cornerstone-element-${uniqueId}`; const size = useSize(dicomImageRef); // Use the useSize hook with dicomImageRef @@ -78,28 +78,31 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { async function setupCornerstone() { const element = document.getElementById(elementId) as HTMLDivElement; - if (file && blob) { + if (selectedFile) { let imageID: string; - const extension = getFileExtension(file.data.fname); + const extension = getFileExtension(selectedFile.data.fname); await basicInit(); setUpTooling(uniqueId); if (extension === "dcm") { + const blob = await selectedFile.getFileBlob(); imageID = await loadDicomImage(blob); } else { const fileviewer = new FileViewerModel(); - const fileName = fileviewer.getFileName(file as FileBrowserFolderFile); - imageID = `web:${file.url}${fileName}`; + const fileName = fileviewer.getFileName( + selectedFile as FileBrowserFolderFile, + ); + imageID = `web:${selectedFile.url}${fileName}`; } const { viewport, renderingEngine: newRenderingEngine } = await displayDicomImage(element, imageID, uniqueId); setActiveViewport(viewport); setRenderingEngine(newRenderingEngine); - return file.data.fname; + return selectedFile.data.fname; } } const { isLoading } = useQuery({ - queryKey: ["cornerstone-preview", file, blob], + queryKey: ["cornerstone-preview", selectedFile], queryFn: () => setupCornerstone(), refetchOnMount: true, }); diff --git a/src/components/Preview/displays/IframeDisplay.tsx b/src/components/Preview/displays/IframeDisplay.tsx index 49744342e..776f72543 100644 --- a/src/components/Preview/displays/IframeDisplay.tsx +++ b/src/components/Preview/displays/IframeDisplay.tsx @@ -1,46 +1,47 @@ -import React, { Fragment } from "react"; -import type { IFileBlob } from "../../../api/model"; -type AllProps = { - fileItem: IFileBlob; +import React, { useEffect, useState, Fragment } from "react"; +import { getFileExtension, type IFileBlob } from "../../../api/model"; + +type IframeDisplayProps = { + selectedFile?: IFileBlob; }; -const IframeDisplay: React.FunctionComponent<AllProps> = (props: AllProps) => { - const { fileItem } = props; +const IframeDisplay: React.FC<IframeDisplayProps> = ({ selectedFile }) => { + const [url, setURL] = useState<string>(""); - let url = ""; + useEffect(() => { + const constructURL = async () => { + const fileType = getFileExtension(selectedFile?.data.fname || ""); + let constructedURL = selectedFile?.url || ""; + if (!constructedURL && selectedFile) { + const blob = await selectedFile.getFileBlob(); + if (blob) { + const type = fileType === "html" ? "text/html" : ""; + constructedURL = URL.createObjectURL(new Blob([blob], { type })); + } + } - if (fileItem.fileType === "html") { - url = fileItem.url - ? fileItem.url - : fileItem.blob - ? window.URL.createObjectURL( - new Blob([fileItem.blob], { type: "text/html" }), - ) - : ""; - } else { - url = fileItem.url - ? fileItem.url - : fileItem.blob - ? window.URL.createObjectURL(new Blob([fileItem.blob])) - : ""; - } + setURL(constructedURL); + }; + constructURL(); + return () => { + URL.revokeObjectURL(url); + }; + }, [selectedFile]); return ( <Fragment> <div className="iframe-container"> <iframe id="myframe" - key={fileItem?.file?.data.fname} + key={selectedFile?.data.fname} src={url} width="100%" height="100%" - title="Gallery" + title="File Display" /> </div> </Fragment> ); }; -const MemoedIframeDisplay = React.memo(IframeDisplay); - -export default MemoedIframeDisplay; +export default React.memo(IframeDisplay); diff --git a/src/components/Preview/displays/ImageDisplay.tsx b/src/components/Preview/displays/ImageDisplay.tsx index b6e8ccdee..86c77b145 100644 --- a/src/components/Preview/displays/ImageDisplay.tsx +++ b/src/components/Preview/displays/ImageDisplay.tsx @@ -2,43 +2,53 @@ import React, { useEffect, useState } from "react"; import type { IFileBlob } from "../../../api/model"; type AllProps = { - fileItem: IFileBlob; + selectedFile?: IFileBlob; }; -const ImageDisplay: React.FunctionComponent<AllProps> = (props: AllProps) => { - const { fileItem } = props; +const ImageDisplay: React.FunctionComponent<AllProps> = ({ selectedFile }) => { const [url, setUrl] = useState<string>(""); useEffect(() => { - if (fileItem.url) { - setUrl(fileItem.url); - } else if (fileItem.blob) { - // Specify the correct MIME type when creating the Blob - const blob = new Blob([fileItem.blob], { type: "image/png" }); - const objectUrl = URL.createObjectURL(blob); - setUrl(objectUrl); - - // Clean up the object URL when the component unmounts - return () => { - URL.revokeObjectURL(objectUrl); - }; + async function constructUrl() { + // Check if the selectedFile has a direct URL + if (selectedFile?.url) { + setUrl(selectedFile.url); + } else { + // Get the Blob if the file doesn't have a URL + const blob = await selectedFile?.getFileBlob(); + if (blob) { + // Create a Blob URL with the correct MIME type for images + const objectUrl = window.URL.createObjectURL( + new Blob([blob], { type: "image/png" }), + ); + setUrl(objectUrl); + + // Cleanup the object URL to avoid memory leaks + return () => { + URL.revokeObjectURL(objectUrl); + }; + } + } } - }, [fileItem]); + constructUrl(); + }, [selectedFile]); + + // Don't render if the URL isn't ready if (!url) return null; return ( - // biome-ignore lint/a11y/useKeyWithClickEvents: <explanation> <img - id={fileItem.file ? fileItem.file.data.fname : ""} + id={selectedFile?.data.fname || ""} src={url} - alt="" - // Prevent default behavior on click - onClick={(e) => e.preventDefault()} + alt={selectedFile?.data.fname || "image"} + onClick={(e) => e.preventDefault()} // Prevent default behavior on click + onKeyDown={(e) => e.preventDefault()} + style={{ maxWidth: "100%", height: "auto" }} // Responsive styling /> ); }; -const ImageDisplayMemoed = React.memo(ImageDisplay); +const MemoedImageDisplay = React.memo(ImageDisplay); -export default ImageDisplayMemoed; +export default MemoedImageDisplay; diff --git a/src/components/Preview/displays/JsonDisplay.tsx b/src/components/Preview/displays/JsonDisplay.tsx index 37eab7d37..5e577a7cc 100644 --- a/src/components/Preview/displays/JsonDisplay.tsx +++ b/src/components/Preview/displays/JsonDisplay.tsx @@ -5,37 +5,29 @@ import type { IFileBlob } from "../../../api/model"; import { ThemeContext } from "../../DarkTheme/useTheme"; type AllProps = { - fileItem: IFileBlob; + selectedFile?: IFileBlob; }; const JsonDisplay: React.FunctionComponent<AllProps> = (props: AllProps) => { const isDarkTheme = useContext(ThemeContext); const [blobText, setBlobText] = useState({}); - const { fileItem } = props; - const _isMounted = useRef(false); + const { selectedFile } = props; - const getBlobText = React.useCallback(() => { - const { blob } = fileItem; - if (blob) { + useEffect(() => { + async function getBlobText() { + console.log("SelectedFile", selectedFile); const reader = new FileReader(); reader.addEventListener("loadend", (e: any) => { const blobText = e.target.result; - if (_isMounted.current === true) setBlobText(JSON.parse(blobText)); + setBlobText(JSON.parse(blobText)); }); - reader.readAsText(blob); + const blob = await selectedFile?.getFileBlob(); + blob && reader.readAsText(blob); } - }, [fileItem]); - - useEffect(() => { - _isMounted.current = true; - getBlobText(); - - return () => { - _isMounted.current = false; - }; - }, [getBlobText]); - - getBlobText(); + if (selectedFile) { + getBlobText(); + } + }, [selectedFile]); return ( <> diff --git a/src/components/Preview/displays/NiiVueDisplay.tsx b/src/components/Preview/displays/NiiVueDisplay.tsx index 3e2534ea5..45864f957 100644 --- a/src/components/Preview/displays/NiiVueDisplay.tsx +++ b/src/components/Preview/displays/NiiVueDisplay.tsx @@ -1,13 +1,17 @@ import React from "react"; -import { IFileBlob } from "../../../api/model.ts"; -import { NVROptions, NVRVolume, FreeSurferColorLUT } from "niivue-react/src"; +import type { IFileBlob } from "../../../api/model.ts"; +import { + type NVROptions, + type NVRVolume, + FreeSurferColorLUT, +} from "niivue-react/src"; import SizedNiivueCanvas from "../../SizedNiivueCanvas"; import { SLICE_TYPE } from "@niivue/niivue"; import styles from "./NiiVueDisplay.module.css"; import { Collection } from "@fnndsc/chrisapi"; type NiiVueDisplayProps = { - fileItem: IFileBlob; + selectedFile?: IFileBlob; }; type PreviewOptions = Required< @@ -29,7 +33,7 @@ const SLICE_TYPES = { M: SLICE_TYPE.MULTIPLANAR, }; -const NiiVueDisplay: React.FC<NiiVueDisplayProps> = ({ fileItem }) => { +const NiiVueDisplay: React.FC<NiiVueDisplayProps> = ({ selectedFile }) => { const [freesurferLut, setFreesurferLut] = React.useState(false); const [sliceTypeName, setSliceTypeName] = React.useState<keyof typeof SLICE_TYPES>("M"); @@ -46,11 +50,11 @@ const NiiVueDisplay: React.FC<NiiVueDisplayProps> = ({ fileItem }) => { crosshairWidth: sliceTypeName === "M" ? 0.5 : 0, }; - if (fileItem.blob !== undefined && fileItem.file !== undefined) { + if (selectedFile !== undefined) { volumes.push({ // NiiVue gets the file extension from name - name: fileItem.file.data.fname, - url: stupidlyGetFileResourceUrl(fileItem), + name: selectedFile.data.fname, + url: stupidlyGetFileResourceUrl(selectedFile), colormap: "gray", colormapLabel: freesurferLut ? FreeSurferColorLUT : null, }); @@ -70,10 +74,15 @@ const NiiVueDisplay: React.FC<NiiVueDisplayProps> = ({ fileItem }) => { ) : ( <div className={styles.container}> <div className={styles.controlBar}> - <button onClick={() => setFreesurferLut(!freesurferLut)}> + <button + type="button" + onClick={() => setFreesurferLut(!freesurferLut)} + > {freesurferLut ? "FreeSurfer" : "gray"} </button> - <button onClick={rotateSliceType}>{sliceTypeName}</button> + <button type="button" onClick={rotateSliceType}> + {sliceTypeName} + </button> {freesurferLut && <span>{crosshairText}</span>} </div> <SizedNiivueCanvas @@ -98,7 +107,7 @@ const NiiVueDisplay: React.FC<NiiVueDisplayProps> = ({ fileItem }) => { * retrieve the file itself. So the file is retrieved a total of two times, * even though it should only be retrieved once. */ -function stupidlyGetFileResourceUrl({ file }: IFileBlob): string { +function stupidlyGetFileResourceUrl(file: IFileBlob): string { return Collection.getLinkRelationUrls( file?.collection.items[0], "file_resource", diff --git a/src/components/Preview/displays/PdfDisplay.tsx b/src/components/Preview/displays/PdfDisplay.tsx index e2e4615bc..6098ef77f 100644 --- a/src/components/Preview/displays/PdfDisplay.tsx +++ b/src/components/Preview/displays/PdfDisplay.tsx @@ -1,29 +1,49 @@ -import type React from "react"; +import React, { useEffect, useState } from "react"; import type { IFileBlob } from "../../../api/model"; type AllProps = { - fileItem: IFileBlob; + selectedFile?: IFileBlob; }; -const PdfDisplay: React.FC<AllProps> = ({ fileItem }: AllProps) => { - const url = fileItem.url - ? fileItem.url - : fileItem.blob - ? window.URL.createObjectURL( - new Blob([fileItem.blob], { type: "application/pdf" }), - ) - : ""; +const PdfDisplay: React.FC<AllProps> = ({ selectedFile }: AllProps) => { + const [url, setUrl] = useState<string>(""); + + useEffect(() => { + async function constructURL() { + if (selectedFile?.url) { + setUrl(selectedFile.url); + } else { + const blob = await selectedFile?.getFileBlob(); + if (blob) { + const objectUrl = window.URL.createObjectURL( + new Blob([blob], { type: "application/pdf" }), + ); + setUrl(objectUrl); + + // Clean up the URL when the component unmounts + return () => { + window.URL.revokeObjectURL(objectUrl); + }; + } + } + } + + constructURL(); + }, [selectedFile]); + + if (!url) return null; + return ( <div className="iframe-container"> <iframe - key={fileItem.file?.data.fname} + key={selectedFile?.data.fname} src={url} width="100%" height="100%" - title="Gallery" + title="PDF Display" /> </div> ); }; -export default PdfDisplay; +export default React.memo(PdfDisplay); diff --git a/src/components/Preview/displays/TextDisplay.tsx b/src/components/Preview/displays/TextDisplay.tsx index 7dbf53a53..0e98de5c2 100644 --- a/src/components/Preview/displays/TextDisplay.tsx +++ b/src/components/Preview/displays/TextDisplay.tsx @@ -3,65 +3,47 @@ import type { IFileBlob } from "../../../api/model"; import useSize from "../../FeedTree/useSize"; type AllProps = { - fileItem: IFileBlob; + selectedFile?: IFileBlob; }; const TextDisplay: React.FunctionComponent<AllProps> = (props: AllProps) => { const divRef = React.useRef(null); - const { fileItem } = props; + const { selectedFile } = props; useSize(divRef); - React.useEffect(() => { - const textDisplay = document.getElementById("text-display"); - - if (textDisplay) { - const reader = new FileReader(); - - reader.addEventListener( - "load", - () => { - //@ts-ignore - textDisplay.innerText = reader.result; - }, - false, - ); - - if (fileItem.blob) { - reader.readAsText(fileItem.blob); - } - } - }, [fileItem]); - React.useEffect(() => { const textDisplay = document.getElementById("text-display"); if (textDisplay) { const displayContent = async () => { - if (fileItem.blob) { - const reader = new FileReader(); - reader.addEventListener( - "load", - () => { - //@ts-ignore - textDisplay.innerText = reader.result; - }, - false, - ); - reader.readAsText(fileItem.blob); - } else if (fileItem.url) { - try { - const response = await fetch(fileItem.url); - const text = await response.text(); - textDisplay.innerText = text; - } catch (error) { - console.error("Failed to fetch text content from URL:", error); + if (selectedFile) { + if (selectedFile.url) { + try { + const response = await fetch(selectedFile.url); + const text = await response.text(); + textDisplay.innerText = text; + } catch (error) { + console.error("Failed to fetch text content from URL:", error); + } + } else { + const reader = new FileReader(); + reader.addEventListener( + "load", + () => { + //@ts-ignore + textDisplay.innerText = reader.result; + }, + false, + ); + const blob = await selectedFile.getFileBlob(); + reader.readAsText(blob); } } }; displayContent(); } - }, [fileItem]); + }, [selectedFile]); return ( <Fragment> diff --git a/src/components/Preview/displays/VideoDisplay.tsx b/src/components/Preview/displays/VideoDisplay.tsx index 15994332f..ebfea032a 100644 --- a/src/components/Preview/displays/VideoDisplay.tsx +++ b/src/components/Preview/displays/VideoDisplay.tsx @@ -1,28 +1,49 @@ +import React, { useEffect, useState } from "react"; import type { IFileBlob } from "../../../api/model"; type AllProps = { - fileItem: IFileBlob; + selectedFile?: IFileBlob; }; -const VideoDisplay = (props: AllProps) => { - const { fileItem } = props; - const { blob, url, fileType } = fileItem; - const urlToFetch = url - ? url - : blob - ? window.URL.createObjectURL(new Blob([blob], { type: blob.type })) - : ""; +const VideoDisplay: React.FC<AllProps> = ({ selectedFile }: AllProps) => { + const [url, setUrl] = useState<string>(""); + const [sourceType, setSourceType] = useState<string>(""); - const sourceType = url ? `video/${fileType}` : blob ? blob.type : ""; + useEffect(() => { + async function constructURL() { + if (selectedFile?.url) { + setUrl(selectedFile.url); + setSourceType(`video/${selectedFile.data.fname.split(".").pop()}`); + } else { + const blob = await selectedFile?.getFileBlob(); + if (blob) { + const objectUrl = window.URL.createObjectURL( + new Blob([blob], { type: blob.type }), + ); + setUrl(objectUrl); + setSourceType(blob.type); + + // Clean up the object URL when the component unmounts + return () => { + window.URL.revokeObjectURL(objectUrl); + }; + } + } + } + + constructURL(); + }, [selectedFile]); + + if (!url) return null; return ( // biome-ignore lint/a11y/useMediaCaption: <explanation> <video controls width="90%" height="90%"> - <source src={urlToFetch} type={sourceType} /> + <source src={url} type={sourceType} /> {/* Fallback message for browsers that do not support video playback */} Your browser does not support the video tag. </video> ); }; -export default VideoDisplay; +export default React.memo(VideoDisplay); diff --git a/src/components/Preview/displays/ViewerDisplay.tsx b/src/components/Preview/displays/ViewerDisplay.tsx index c169584e8..bda49d83a 100644 --- a/src/components/Preview/displays/ViewerDisplay.tsx +++ b/src/components/Preview/displays/ViewerDisplay.tsx @@ -1,5 +1,4 @@ import type * as React from "react"; -import type { IFileBlob } from "../../../api/model"; import type { ActionState } from "../FileDetailView"; import { CatchallDisplay, @@ -13,6 +12,7 @@ import { VideoDisplay, XtkDisplay, } from "./index"; +import type { FileBrowserFolderFile, PACSFile } from "@fnndsc/chrisapi"; const components = { JsonDisplay, @@ -29,9 +29,9 @@ const components = { interface ViewerDisplayProps { viewerName: string; - fileItem: IFileBlob; preview?: string; actionState: ActionState; + selectedFile: FileBrowserFolderFile | PACSFile; } const ViewerDisplay: React.FC<ViewerDisplayProps> = ( From 24e357211cf9af84eca7b5f2dd8e24e7826486c1 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 13 Sep 2024 11:27:33 -0400 Subject: [PATCH 188/337] feat: Update how previews are fetched --- .../Preview/displays/CatchallDisplay.tsx | 1 - .../Preview/displays/IframeDisplay.tsx | 19 ++++----- .../Preview/displays/ImageDisplay.tsx | 41 +++++++++++-------- .../Preview/displays/JsonDisplay.tsx | 1 - .../Preview/displays/PdfDisplay.tsx | 27 ++++++------ .../Preview/displays/TextDisplay.tsx | 31 +++++--------- .../Preview/displays/VideoDisplay.tsx | 29 ++++++------- 7 files changed, 66 insertions(+), 83 deletions(-) diff --git a/src/components/Preview/displays/CatchallDisplay.tsx b/src/components/Preview/displays/CatchallDisplay.tsx index 7cade1051..204dcaa30 100644 --- a/src/components/Preview/displays/CatchallDisplay.tsx +++ b/src/components/Preview/displays/CatchallDisplay.tsx @@ -12,7 +12,6 @@ const CatchallDisplay: React.FunctionComponent<AllProps> = ( const noPreviewMessage = () => { const { selectedFile } = props; const extension = getFileExtension(selectedFile?.data.fname); - return ( <Alert type="info" diff --git a/src/components/Preview/displays/IframeDisplay.tsx b/src/components/Preview/displays/IframeDisplay.tsx index 776f72543..b85a47201 100644 --- a/src/components/Preview/displays/IframeDisplay.tsx +++ b/src/components/Preview/displays/IframeDisplay.tsx @@ -5,23 +5,22 @@ type IframeDisplayProps = { selectedFile?: IFileBlob; }; -const IframeDisplay: React.FC<IframeDisplayProps> = ({ selectedFile }) => { +const IframeDisplay: React.FC<IframeDisplayProps> = ({ + selectedFile, +}: IframeDisplayProps) => { const [url, setURL] = useState<string>(""); useEffect(() => { const constructURL = async () => { - const fileType = getFileExtension(selectedFile?.data.fname || ""); - let constructedURL = selectedFile?.url || ""; - if (!constructedURL && selectedFile) { - const blob = await selectedFile.getFileBlob(); - if (blob) { - const type = fileType === "html" ? "text/html" : ""; - constructedURL = URL.createObjectURL(new Blob([blob], { type })); - } - } + if (!selectedFile) return; + const fileType = getFileExtension(selectedFile.data.fname); + const blob = await selectedFile.getFileBlob(); + const type = fileType === "html" ? "text/html" : ""; + const constructedURL = URL.createObjectURL(new Blob([blob], { type })); setURL(constructedURL); }; + constructURL(); return () => { URL.revokeObjectURL(url); diff --git a/src/components/Preview/displays/ImageDisplay.tsx b/src/components/Preview/displays/ImageDisplay.tsx index 86c77b145..8ff4a62fb 100644 --- a/src/components/Preview/displays/ImageDisplay.tsx +++ b/src/components/Preview/displays/ImageDisplay.tsx @@ -1,5 +1,5 @@ import React, { useEffect, useState } from "react"; -import type { IFileBlob } from "../../../api/model"; +import { getFileExtension, type IFileBlob } from "../../../api/model"; type AllProps = { selectedFile?: IFileBlob; @@ -10,24 +10,29 @@ const ImageDisplay: React.FunctionComponent<AllProps> = ({ selectedFile }) => { useEffect(() => { async function constructUrl() { - // Check if the selectedFile has a direct URL - if (selectedFile?.url) { - setUrl(selectedFile.url); - } else { - // Get the Blob if the file doesn't have a URL - const blob = await selectedFile?.getFileBlob(); - if (blob) { - // Create a Blob URL with the correct MIME type for images - const objectUrl = window.URL.createObjectURL( - new Blob([blob], { type: "image/png" }), - ); - setUrl(objectUrl); - - // Cleanup the object URL to avoid memory leaks - return () => { - URL.revokeObjectURL(objectUrl); - }; + if (!selectedFile) return; + + // Get the Blob if the file doesn't have a URL + const blob = await selectedFile?.getFileBlob(); + if (blob) { + let type = ""; + + const fileType = getFileExtension(selectedFile.data.fname); + if (fileType === "png") { + type = "image/png"; + } + if (fileType === "jpg") { + type = "image/jpg"; } + // Create a Blob URL with the correct MIME type for images + const objectUrl = window.URL.createObjectURL( + new Blob([blob], { type }), + ); + setUrl(objectUrl); + // Cleanup the object URL to avoid memory leaks + return () => { + URL.revokeObjectURL(objectUrl); + }; } } diff --git a/src/components/Preview/displays/JsonDisplay.tsx b/src/components/Preview/displays/JsonDisplay.tsx index 5e577a7cc..e16fa4552 100644 --- a/src/components/Preview/displays/JsonDisplay.tsx +++ b/src/components/Preview/displays/JsonDisplay.tsx @@ -15,7 +15,6 @@ const JsonDisplay: React.FunctionComponent<AllProps> = (props: AllProps) => { useEffect(() => { async function getBlobText() { - console.log("SelectedFile", selectedFile); const reader = new FileReader(); reader.addEventListener("loadend", (e: any) => { const blobText = e.target.result; diff --git a/src/components/Preview/displays/PdfDisplay.tsx b/src/components/Preview/displays/PdfDisplay.tsx index 6098ef77f..f968848ff 100644 --- a/src/components/Preview/displays/PdfDisplay.tsx +++ b/src/components/Preview/displays/PdfDisplay.tsx @@ -10,21 +10,18 @@ const PdfDisplay: React.FC<AllProps> = ({ selectedFile }: AllProps) => { useEffect(() => { async function constructURL() { - if (selectedFile?.url) { - setUrl(selectedFile.url); - } else { - const blob = await selectedFile?.getFileBlob(); - if (blob) { - const objectUrl = window.URL.createObjectURL( - new Blob([blob], { type: "application/pdf" }), - ); - setUrl(objectUrl); - - // Clean up the URL when the component unmounts - return () => { - window.URL.revokeObjectURL(objectUrl); - }; - } + if (!selectedFile) return; + const blob = await selectedFile?.getFileBlob(); + if (blob) { + const objectUrl = window.URL.createObjectURL( + new Blob([blob], { type: "application/pdf" }), + ); + setUrl(objectUrl); + + // Clean up the URL when the component unmounts + return () => { + window.URL.revokeObjectURL(objectUrl); + }; } } diff --git a/src/components/Preview/displays/TextDisplay.tsx b/src/components/Preview/displays/TextDisplay.tsx index 0e98de5c2..8c498db9d 100644 --- a/src/components/Preview/displays/TextDisplay.tsx +++ b/src/components/Preview/displays/TextDisplay.tsx @@ -17,27 +17,16 @@ const TextDisplay: React.FunctionComponent<AllProps> = (props: AllProps) => { if (textDisplay) { const displayContent = async () => { if (selectedFile) { - if (selectedFile.url) { - try { - const response = await fetch(selectedFile.url); - const text = await response.text(); - textDisplay.innerText = text; - } catch (error) { - console.error("Failed to fetch text content from URL:", error); - } - } else { - const reader = new FileReader(); - reader.addEventListener( - "load", - () => { - //@ts-ignore - textDisplay.innerText = reader.result; - }, - false, - ); - const blob = await selectedFile.getFileBlob(); - reader.readAsText(blob); - } + const reader = new FileReader(); + reader.addEventListener( + "load", + () => { + textDisplay.innerText = reader.result as string; + }, + false, + ); + const blob = await selectedFile.getFileBlob(); + reader.readAsText(blob); } }; diff --git a/src/components/Preview/displays/VideoDisplay.tsx b/src/components/Preview/displays/VideoDisplay.tsx index ebfea032a..3468050ea 100644 --- a/src/components/Preview/displays/VideoDisplay.tsx +++ b/src/components/Preview/displays/VideoDisplay.tsx @@ -11,23 +11,18 @@ const VideoDisplay: React.FC<AllProps> = ({ selectedFile }: AllProps) => { useEffect(() => { async function constructURL() { - if (selectedFile?.url) { - setUrl(selectedFile.url); - setSourceType(`video/${selectedFile.data.fname.split(".").pop()}`); - } else { - const blob = await selectedFile?.getFileBlob(); - if (blob) { - const objectUrl = window.URL.createObjectURL( - new Blob([blob], { type: blob.type }), - ); - setUrl(objectUrl); - setSourceType(blob.type); - - // Clean up the object URL when the component unmounts - return () => { - window.URL.revokeObjectURL(objectUrl); - }; - } + const blob = await selectedFile?.getFileBlob(); + if (blob) { + const objectUrl = window.URL.createObjectURL( + new Blob([blob], { type: blob.type }), + ); + setUrl(objectUrl); + setSourceType(blob.type); + + // Clean up the object URL when the component unmounts + return () => { + window.URL.revokeObjectURL(objectUrl); + }; } } From 997dc6be1c8611140841f222e33d6649819f89e5 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 13 Sep 2024 12:48:55 -0400 Subject: [PATCH 189/337] feat: Implement stack scroll for dicom images --- src/components/CreateFeed/ChrisFileSelect.tsx | 4 +- src/components/CreateFeed/LocalFileUpload.tsx | 4 +- .../FeedOutputBrowser/FileBrowser.tsx | 1 + src/components/FeedTree/DropdownMenu.tsx | 2 +- src/components/FeedTree/FeedGraph.tsx | 2 - src/components/Preview/FileDetailView.tsx | 9 ++- .../Preview/displays/DcmDisplay.tsx | 59 +++++++++++++++++-- .../Preview/displays/ImageDisplay.tsx | 1 - .../Preview/displays/NiiVueDisplay.tsx | 10 ++-- .../Preview/displays/ViewerDisplay.tsx | 2 + .../Preview/displays/dicomUtils/utils.ts | 2 + 11 files changed, 77 insertions(+), 19 deletions(-) diff --git a/src/components/CreateFeed/ChrisFileSelect.tsx b/src/components/CreateFeed/ChrisFileSelect.tsx index b5c12a28a..558aeb1f9 100644 --- a/src/components/CreateFeed/ChrisFileSelect.tsx +++ b/src/components/CreateFeed/ChrisFileSelect.tsx @@ -117,9 +117,9 @@ const ChrisFileSelect: React.FC<ChrisFileSelectProp> = ({ const handleKeyDown = useCallback( (e: any) => { if (e.target.closest("INPUT")) return; - if (chrisFiles.length > 0 && e.code == "ArrowRight") { + if (chrisFiles.length > 0 && e.code === "ArrowRight") { onNext(); - } else if (e.code == "ArrowLeft") { + } else if (e.code === "ArrowLeft") { onBack(); } }, diff --git a/src/components/CreateFeed/LocalFileUpload.tsx b/src/components/CreateFeed/LocalFileUpload.tsx index 12eafa36c..2c19d78a3 100644 --- a/src/components/CreateFeed/LocalFileUpload.tsx +++ b/src/components/CreateFeed/LocalFileUpload.tsx @@ -64,9 +64,9 @@ const FileUploadComponent = ({ }: FileUploadProps) => { const handleKeyDown = useCallback( (e: any) => { - if (e.code == "ArrowLeft") { + if (e.code === "ArrowLeft") { onBack(); - } else if (e.code == "ArrowRight" && localFiles.length > 0) { + } else if (e.code === "ArrowRight" && localFiles.length > 0) { onNext(); } }, diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 0fcb56f7e..b182894ce 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -172,6 +172,7 @@ const FileBrowser = (props: FileBrowserProps) => { selectedFile={selectedFile} preview="large" isPublic={feed?.data.public} + list={pluginFilesPayload.filesMap} /> )} {drawerState.preview.currentlyActive === "xtk" && <XtkViewer />} diff --git a/src/components/FeedTree/DropdownMenu.tsx b/src/components/FeedTree/DropdownMenu.tsx index 733eaac2f..598eca003 100644 --- a/src/components/FeedTree/DropdownMenu.tsx +++ b/src/components/FeedTree/DropdownMenu.tsx @@ -12,13 +12,13 @@ const DropdownMenu = ({ children: React.ReactElement; handleZip: () => void; }) => { + const dispatch = useDispatch(); const { selectedPlugin } = useTypedSelector((state) => { return state.instance; }); const cancelled = selectedPlugin?.data.status === "cancelled" || selectedPlugin?.data.status === "finishedWithError"; - const dispatch = useDispatch(); const items: MenuProps["items"] = [ { key: "1", diff --git a/src/components/FeedTree/FeedGraph.tsx b/src/components/FeedTree/FeedGraph.tsx index 18efee88d..99ec1b727 100644 --- a/src/components/FeedTree/FeedGraph.tsx +++ b/src/components/FeedTree/FeedGraph.tsx @@ -116,9 +116,7 @@ const FeedGraph = (props: IFeedProps) => { </div> <> <ForceGraph2D - //@ts-ignore height={size.height || 500} - //@ts-ignore width={size.width || 500} ref={fgRef} graphData={graphData} diff --git a/src/components/Preview/FileDetailView.tsx b/src/components/Preview/FileDetailView.tsx index 4eb153a82..d4672f46d 100644 --- a/src/components/Preview/FileDetailView.tsx +++ b/src/components/Preview/FileDetailView.tsx @@ -18,7 +18,11 @@ import React, { type ReactElement, } from "react"; import { ErrorBoundary } from "react-error-boundary"; -import { fileViewerMap, getFileExtension } from "../../api/model"; +import { + type IFileBlob, + fileViewerMap, + getFileExtension, +} from "../../api/model"; import { useTypedSelector } from "../../store/hooks"; import { SpinContainer } from "../Common"; import { @@ -43,6 +47,7 @@ interface AllProps { handlePrevious?: () => void; gallery?: boolean; isPublic?: boolean; + list?: IFileBlob[]; } export interface ActionState { @@ -199,6 +204,8 @@ const FileDetailView = (props: AllProps) => { viewerName={viewerName} actionState={actionState} selectedFile={selectedFile} + // Optional for dicom scrolling + list={props.list} /> )} </div> diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index bd971660a..4432900d0 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -27,15 +27,15 @@ export type DcmImageProps = { selectedFile?: IFileBlob; actionState: ActionState; preview: string; + list?: IFileBlob[]; }; const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { - console.log("Props", props); - const { selectedFile, actionState, preview } = props; - + const { selectedFile, actionState, preview, list } = props; const [activeViewport, setActiveViewport] = useState< IStackViewport | undefined >(); + const [imageStack, setImageStack] = useState<string[]>([]); const [renderingEngine, setRenderingEngine] = useState<RenderingEngine>(); const dicomImageRef = useRef<HTMLDivElement>(null); const uniqueId = `${selectedFile?.data.id || v4()}`; @@ -45,9 +45,7 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { const handleResize = () => { // Update the element with elementId when the size of dicomImageRef changes if (dicomImageRef.current && size) { - //@ts-ignore const parentWidth = size.width; - //@ts-ignore const parentHeight = size.height; const element = document.getElementById(elementId); if (element) { @@ -87,6 +85,9 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { const blob = await selectedFile.getFileBlob(); imageID = await loadDicomImage(blob); } else { + // Code to view png and jpg file types in cornerstone. Currently we are using the default image display so this code is redundant. + + // This code should be deleted in the future. const fileviewer = new FileViewerModel(); const fileName = fileviewer.getFileName( selectedFile as FileBrowserFolderFile, @@ -97,6 +98,7 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { await displayDicomImage(element, imageID, uniqueId); setActiveViewport(viewport); setRenderingEngine(newRenderingEngine); + setImageStack([imageID]); return selectedFile.data.fname; } } @@ -105,6 +107,7 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { queryKey: ["cornerstone-preview", selectedFile], queryFn: () => setupCornerstone(), refetchOnMount: true, + enabled: !!selectedFile, }); useEffect(() => { @@ -117,6 +120,52 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { handleResize(); }, [size]); + const loadMoreImages = async (signal: AbortSignal) => { + const newImageStack = []; + if (list) { + for (const file of list) { + if (signal.aborted) return; + const extension = getFileExtension(file.data.fname); + let imageId: string; + if (extension === "dcm") { + const blob = await file.getFileBlob(); + imageId = await loadDicomImage(blob); // Load and generate the image ID + } else { + const fileviewer = new FileViewerModel(); + const fileName = fileviewer.getFileName( + file as FileBrowserFolderFile, + ); + imageId = `web:${file.url}${fileName}`; + } + newImageStack.push(imageId); // Add the new image ID to the stack + } + setImageStack(newImageStack); + + if (activeViewport) { + await activeViewport.setStack(newImageStack); + activeViewport.render(); + } + } + }; + + useEffect(() => { + const controller = new AbortController(); + const signal = controller.signal; + if (list) { + if ( + imageStack.length > 0 && + imageStack.length !== list.length && + activeViewport + ) { + loadMoreImages(signal); + } + } + + return () => { + controller.abort(); // Abort loading images on unmount + }; + }, [list, activeViewport]); + return ( <> {isLoading && <SpinContainer title="Displaying image..." />} diff --git a/src/components/Preview/displays/ImageDisplay.tsx b/src/components/Preview/displays/ImageDisplay.tsx index 8ff4a62fb..833d409a1 100644 --- a/src/components/Preview/displays/ImageDisplay.tsx +++ b/src/components/Preview/displays/ImageDisplay.tsx @@ -16,7 +16,6 @@ const ImageDisplay: React.FunctionComponent<AllProps> = ({ selectedFile }) => { const blob = await selectedFile?.getFileBlob(); if (blob) { let type = ""; - const fileType = getFileExtension(selectedFile.data.fname); if (fileType === "png") { type = "image/png"; diff --git a/src/components/Preview/displays/NiiVueDisplay.tsx b/src/components/Preview/displays/NiiVueDisplay.tsx index 45864f957..d1a58e797 100644 --- a/src/components/Preview/displays/NiiVueDisplay.tsx +++ b/src/components/Preview/displays/NiiVueDisplay.tsx @@ -1,14 +1,14 @@ -import React from "react"; -import type { IFileBlob } from "../../../api/model.ts"; +import { Collection } from "@fnndsc/chrisapi"; +import { SLICE_TYPE } from "@niivue/niivue"; import { + FreeSurferColorLUT, type NVROptions, type NVRVolume, - FreeSurferColorLUT, } from "niivue-react/src"; +import React from "react"; +import type { IFileBlob } from "../../../api/model.ts"; import SizedNiivueCanvas from "../../SizedNiivueCanvas"; -import { SLICE_TYPE } from "@niivue/niivue"; import styles from "./NiiVueDisplay.module.css"; -import { Collection } from "@fnndsc/chrisapi"; type NiiVueDisplayProps = { selectedFile?: IFileBlob; diff --git a/src/components/Preview/displays/ViewerDisplay.tsx b/src/components/Preview/displays/ViewerDisplay.tsx index bda49d83a..49cebb2c8 100644 --- a/src/components/Preview/displays/ViewerDisplay.tsx +++ b/src/components/Preview/displays/ViewerDisplay.tsx @@ -13,6 +13,7 @@ import { XtkDisplay, } from "./index"; import type { FileBrowserFolderFile, PACSFile } from "@fnndsc/chrisapi"; +import type { IFileBlob } from "../../../api/model"; const components = { JsonDisplay, @@ -32,6 +33,7 @@ interface ViewerDisplayProps { preview?: string; actionState: ActionState; selectedFile: FileBrowserFolderFile | PACSFile; + list?: IFileBlob[]; } const ViewerDisplay: React.FC<ViewerDisplayProps> = ( diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index e0d1be416..7acac18a9 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -280,6 +280,8 @@ export const displayDicomImage = async ( await viewport.setStack(imageIds); cornerstoneTools.utilities.stackPrefetch.enable(viewport.element); viewport.render(); + // Set the stack scroll mouse wheel tool + toolGroup?.setToolActive(StackScrollMouseWheelTool.toolName); return { viewport, From d0d7dd2d6f340eba23300b391c42252aa2249e7e Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 13 Sep 2024 14:27:55 -0400 Subject: [PATCH 190/337] feat: Add dicom scrolling to the library table --- src/components/NewLibrary/components/LibraryTable.tsx | 6 +++++- src/components/NewLibrary/components/Operations.tsx | 1 - src/components/Preview/displays/DcmDisplay.tsx | 8 +++----- 3 files changed, 8 insertions(+), 7 deletions(-) diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index cc8be8b07..2dcb8d5b9 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -306,7 +306,11 @@ const LibraryTable: React.FC<TableProps> = ({ placement="right" > {selectedFile && ( - <FileDetailView selectedFile={selectedFile} preview="large" /> + <FileDetailView + selectedFile={selectedFile} + preview="large" + list={data.files} + /> )} </Drawer> <Table diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index ba8de6d0e..953202e99 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -80,7 +80,6 @@ const Operations = ({ ); if (isFeedsTable) { - console.log("Disabling"); OPERATION_ITEMS[0].disabled = true; } diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 4432900d0..c209e5068 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -99,6 +99,7 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { setActiveViewport(viewport); setRenderingEngine(newRenderingEngine); setImageStack([imageID]); + return selectedFile.data.fname; } } @@ -131,11 +132,7 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { const blob = await file.getFileBlob(); imageId = await loadDicomImage(blob); // Load and generate the image ID } else { - const fileviewer = new FileViewerModel(); - const fileName = fileviewer.getFileName( - file as FileBrowserFolderFile, - ); - imageId = `web:${file.url}${fileName}`; + continue; } newImageStack.push(imageId); // Add the new image ID to the stack } @@ -169,6 +166,7 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { return ( <> {isLoading && <SpinContainer title="Displaying image..." />} + <div id="content" ref={dicomImageRef} From f9754d46114950260bd5b72b8d27d0074d27c844 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 13 Sep 2024 14:41:26 -0400 Subject: [PATCH 191/337] refactor: General cleanup --- src/components/NewLibrary/components/LibraryTable.tsx | 2 +- src/components/Preview/displays/dicomUtils/utils.ts | 4 ++++ 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 2dcb8d5b9..0a255437f 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -322,7 +322,7 @@ const LibraryTable: React.FC<TableProps> = ({ <Caption>Data Library</Caption> <Thead> <Tr> - <Th arial-label="Select a row" /> + <Th screenReaderText="Select a row" arial-label="Select a row" /> <Th sort={{ sortBy, onSort, columnIndex: 1 }} name="name"> {columnNames.name} </Th> diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index 7acac18a9..2ae6cb61c 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -280,6 +280,10 @@ export const displayDicomImage = async ( await viewport.setStack(imageIds); cornerstoneTools.utilities.stackPrefetch.enable(viewport.element); viewport.render(); + + viewport.element.addEventListener("cornerstoneimagerendered", () => { + const currentIndex = viewport.getCurrentImageIdIndex(); + }); // Set the stack scroll mouse wheel tool toolGroup?.setToolActive(StackScrollMouseWheelTool.toolName); From 5dc1248f73d41962a8beb3ac65e93a23fb974a7f Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Sun, 15 Sep 2024 21:20:32 -0400 Subject: [PATCH 192/337] Add LonkClient --- package-lock.json | 27 ++++++- package.json | 3 +- src/api/fp/chrisapi.ts | 84 ++++++++++----------- src/api/fp/fpFileBrowserFile.ts | 65 ---------------- src/api/fp/helpers.test.ts | 41 ++++++++++ src/api/lonk/client.test.ts | 106 ++++++++++++++++++++++++++ src/api/lonk/client.ts | 129 ++++++++++++++++++++++++++++++++ src/api/lonk/de.ts | 53 +++++++++++++ src/api/lonk/index.ts | 11 +++ src/api/lonk/seriesMap.test.ts | 11 +++ src/api/lonk/seriesMap.ts | 34 +++++++++ src/api/lonk/types.ts | 92 +++++++++++++++++++++++ 12 files changed, 544 insertions(+), 112 deletions(-) delete mode 100644 src/api/fp/fpFileBrowserFile.ts create mode 100644 src/api/fp/helpers.test.ts create mode 100644 src/api/lonk/client.test.ts create mode 100644 src/api/lonk/client.ts create mode 100644 src/api/lonk/de.ts create mode 100644 src/api/lonk/index.ts create mode 100644 src/api/lonk/seriesMap.test.ts create mode 100644 src/api/lonk/seriesMap.ts create mode 100644 src/api/lonk/types.ts diff --git a/package-lock.json b/package-lock.json index a080cbab4..5db811a7b 100644 --- a/package-lock.json +++ b/package-lock.json @@ -94,7 +94,8 @@ "rollup-plugin-node-builtins": "^2.1.2", "vite": "^5.3.2", "vite-plugin-istanbul": "^6.0.2", - "vitest": "^2.0.5" + "vitest": "^2.0.5", + "vitest-websocket-mock": "^0.4.0" } }, "node_modules/@ampproject/remapping": { @@ -6469,6 +6470,16 @@ "integrity": "sha512-r6lj77KlwqLhIUku9UWYes7KJtsczvolZkzp8hbaDPPaE24OmWl5s539Mytlj22siEQKosZ26qCBgda2PKwoJw==", "license": "MIT" }, + "node_modules/mock-socket": { + "version": "9.3.1", + "resolved": "https://registry.npmjs.org/mock-socket/-/mock-socket-9.3.1.tgz", + "integrity": "sha512-qxBgB7Qa2sEQgHFjj0dSigq7fX4k6Saisd5Nelwp2q8mlbAFh5dHV9JTTlF8viYJLSSWgMCZFUom8PJcMNBoJw==", + "dev": true, + "license": "MIT", + "engines": { + "node": ">= 8" + } + }, "node_modules/mri": { "version": "1.2.0", "resolved": "https://registry.npmjs.org/mri/-/mri-1.2.0.tgz", @@ -9875,6 +9886,20 @@ } } }, + "node_modules/vitest-websocket-mock": { + "version": "0.4.0", + "resolved": "https://registry.npmjs.org/vitest-websocket-mock/-/vitest-websocket-mock-0.4.0.tgz", + "integrity": "sha512-tGnOwE2nC8jfioQXDrX+lZ8EVrF+IO2NVqe1vV9h945W/hlR0S6ZYbMqCJGG3Nyd//c5XSe1IGLD2ZgE2D1I7Q==", + "dev": true, + "license": "MIT", + "dependencies": { + "@vitest/utils": "^2.0.3", + "mock-socket": "^9.2.1" + }, + "peerDependencies": { + "vitest": ">=2" + } + }, "node_modules/warning": { "version": "4.0.3", "resolved": "https://registry.npmjs.org/warning/-/warning-4.0.3.tgz", diff --git a/package.json b/package.json index 7cf98cf7e..87c6be441 100644 --- a/package.json +++ b/package.json @@ -124,7 +124,8 @@ "rollup-plugin-node-builtins": "^2.1.2", "vite": "^5.3.2", "vite-plugin-istanbul": "^6.0.2", - "vitest": "^2.0.5" + "vitest": "^2.0.5", + "vitest-websocket-mock": "^0.4.0" }, "type": "module" } diff --git a/src/api/fp/chrisapi.ts b/src/api/fp/chrisapi.ts index df3ad7fa0..21c7fc1df 100644 --- a/src/api/fp/chrisapi.ts +++ b/src/api/fp/chrisapi.ts @@ -1,17 +1,15 @@ import Client, { AllPluginInstanceList, + DownloadToken, Feed, FeedPluginInstanceList, - FileBrowserPath, - FileBrowserPathFileList, PluginInstance, PublicFeedList, } from "@fnndsc/chrisapi"; import * as TE from "fp-ts/TaskEither"; import * as E from "fp-ts/Either"; -import * as Console from "fp-ts/Console"; import { pipe } from "fp-ts/function"; -import FpFileBrowserFile from "./fpFileBrowserFile"; +import LonkClient, { LonkHandlers } from "../lonk"; /** * fp-ts friendly wrapper for @fnndsc/chrisapi @@ -27,7 +25,7 @@ class FpClient { ...params: Parameters<Client["getPluginInstance"]> ): TE.TaskEither<Error, PluginInstance> { return TE.tryCatch( - () => this.client.getPluginInstance(...params), + () => this.client.getPluginInstance(...params).then(notNull), E.toError, ); } @@ -48,6 +46,7 @@ class FpClient { }, }; if (this.client.auth.token) { + // @ts-ignore options.headers.Authorization = `Token ${this.client.auth.token}`; } return pipe( @@ -115,55 +114,50 @@ class FpClient { return TE.tryCatch(() => feed.getPluginInstances(...params), E.toError); } + public createDownloadToken( + ...params: Parameters<Client["createDownloadToken"]> + ): TE.TaskEither<Error, DownloadToken> { + return TE.tryCatch( + () => this.client.createDownloadToken(...params).then(notNull), + E.toError, + ); + } + /** - * A wrapper which calles `getFileBrowserPath` then `getFiles`, - * and processes the returned objects to have a more sane type. - * - * Pretty much gives you back what CUBE would return from - * `api/v1/filebrowser-files/.../` with HTTP header `Accept: application/json` + * Create a WebSockets connection to the LONK-WS endpoint. * - * Pagination is not implemented, hence the name "get **few** files under"... + * https://chrisproject.org/docs/oxidicom/lonk-ws */ - public getFewFilesUnder( - ...args: Parameters<Client["getFileBrowserPath"]> - ): TE.TaskEither<Error, ReadonlyArray<FpFileBrowserFile>> { + public connectPacsNotifications({ + onDone, + onProgress, + onError, + timeout, + }: LonkHandlers & { timeout?: number }): TE.TaskEither<Error, LonkClient> { return pipe( - this.getFileBrowserPath(...args), - TE.flatMap((fb) => FpClient.filebrowserGetFiles(fb, { limit: 100 })), - TE.tapIO((list) => { - if (list.hasNextPage) { - return Console.warn( - `Not all elements from ${list.url} were fetched, ` + - "and pagination not implemented.", - ); - } - return () => undefined; + this.createDownloadToken(timeout), + TE.map((downloadToken) => { + const url = getWebsocketUrl(downloadToken); + const ws = new WebSocket(url); + return new LonkClient({ ws, onDone, onProgress, onError }); }), - TE.map(saneReturnOfFileBrowserPathFileList), - ); - } - - public getFileBrowserPath( - ...args: Parameters<Client["getFileBrowserPath"]> - ): TE.TaskEither<Error, FileBrowserPath> { - return TE.tryCatch( - () => this.client.getFileBrowserPath(...args), - E.toError, ); } +} - public static filebrowserGetFiles( - fbp: FileBrowserPath, - ...params: Parameters<FileBrowserPath["getFiles"]> - ): TE.TaskEither<Error, FileBrowserPathFileList> { - return TE.tryCatch(() => fbp.getFiles(...params), E.toError); - } +function getWebsocketUrl(downloadTokenResponse: DownloadToken): string { + const token = downloadTokenResponse.data.token; + return downloadTokenResponse.url + .replace(/^http(s?):\/\//, (_match, s) => `ws${s}://`) + .replace(/v1\/downloadtokens\/\d+\//, `v1/pacs/progress/?token=${token}`); } -function saneReturnOfFileBrowserPathFileList( - fbpfl: FileBrowserPathFileList, -): ReadonlyArray<FpFileBrowserFile> { - return fbpfl.getItems()!.map((file) => new FpFileBrowserFile(file)); +function notNull<T>(x: T | null): T { + if (x === null) { + throw Error(); + } + return x; } -export { FpClient, saneReturnOfFileBrowserPathFileList, FpFileBrowserFile }; +export default FpClient; +export { FpClient, getWebsocketUrl }; diff --git a/src/api/fp/fpFileBrowserFile.ts b/src/api/fp/fpFileBrowserFile.ts deleted file mode 100644 index 856517bcd..000000000 --- a/src/api/fp/fpFileBrowserFile.ts +++ /dev/null @@ -1,65 +0,0 @@ -import { Collection, FileBrowserPathFile } from "@fnndsc/chrisapi"; -import * as TE from "fp-ts/TaskEither"; -import * as E from "fp-ts/Either"; -import { pipe } from "fp-ts/function"; - -/** - * A type-safe wrapper for `FileBrowserPathFile` which also handles - * the annoyances of Collection+JSON. - */ -class FpFileBrowserFile { - private readonly file: FileBrowserPathFile; - - constructor(file: FileBrowserPathFile) { - this.file = file; - } - - get creation_date(): string { - return this.file.data.creation_date; - } - - get fname(): string { - return this.file.data.fname; - } - - get fsize(): number { - return this.file.data.fsize; - } - - get file_resource() { - return Collection.getLinkRelationUrls( - this.file.collection.items[0], - "file_resource", - )[0]; - } - - get url() { - return Collection.getLinkRelationUrls( - this.file.collection.items[0], - "url", - )[0]; - } - - getFileBlob( - ...args: Parameters<FileBrowserPathFile["getFileBlob"]> - ): TE.TaskEither<Error, Blob> { - return TE.tryCatch(() => this.file.getFileBlob(...args), E.toError); - } - - /** - * Get the data of this file, assuming it is UTF-8 plaintext. - */ - getAsText( - ...args: Parameters<FileBrowserPathFile["getFileBlob"]> - ): TE.TaskEither<Error, string> { - return pipe( - this.getFileBlob(...args), - TE.flatMap((blob) => { - const task = () => blob.text(); - return TE.rightTask(task); - }), - ); - } -} - -export default FpFileBrowserFile; diff --git a/src/api/fp/helpers.test.ts b/src/api/fp/helpers.test.ts new file mode 100644 index 000000000..c3f662c0a --- /dev/null +++ b/src/api/fp/helpers.test.ts @@ -0,0 +1,41 @@ +import { test, expect } from "vitest"; +import { getWebsocketUrl } from "./chrisapi.ts"; + +test.each([ + [ + { + url: "http://example.com/api/v1/downloadtokens/9/", + auth: { + token: "fakeauthtoken", + }, + contentType: "application/vnd.collection+json", + data: { + id: 9, + creation_date: "2024-08-27T17:17:28.580683-04:00", + token: "nota.real.jwttoken", + owner_username: "chris", + }, + }, + "ws://example.com/api/v1/pacs/progress/?token=nota.real.jwttoken", + ], + [ + { + url: "https://example.com/api/v1/downloadtokens/9/", + auth: { + token: "fakeauthtoken", + }, + contentType: "application/vnd.collection+json", + data: { + id: 9, + creation_date: "2024-08-27T17:17:28.580683-04:00", + token: "stillnota.real.jwttoken", + owner_username: "chris", + }, + }, + "wss://example.com/api/v1/pacs/progress/?token=stillnota.real.jwttoken", + ], +])("getWebsocketUrl(%o, %s) -> %s", (downloadTokenResponse, expected) => { + // @ts-ignore + let actual = getWebsocketUrl(downloadTokenResponse); + expect(actual).toBe(expected); +}); diff --git a/src/api/lonk/client.test.ts b/src/api/lonk/client.test.ts new file mode 100644 index 000000000..ec6d828b2 --- /dev/null +++ b/src/api/lonk/client.test.ts @@ -0,0 +1,106 @@ +import { test, expect, vi } from "vitest"; +import LonkClient, { LonkHandlers } from "./client.ts"; +import WS from "vitest-websocket-mock"; + +test("LonkClient", async () => { + const handlers: LonkHandlers = { + onDone: vi.fn(), + onProgress: vi.fn(), + onError: vi.fn(), + }; + const [server, client] = await createMockubeWs(handlers); + const SeriesInstanceUID = "1.234.56789"; + const pacs_name = "MyPACS"; + + const subscriptionReceiveAndRespond = async () => { + await expect(server).toReceiveMessage({ + pacs_name, + SeriesInstanceUID, + action: "subscribe", + }); + server.send({ + pacs_name, + SeriesInstanceUID, + message: { subscribed: true }, + }); + }; + + await Promise.all([ + subscriptionReceiveAndRespond(), + client.subscribe(pacs_name, SeriesInstanceUID), + ]); + + server.send({ + pacs_name, + SeriesInstanceUID, + message: { + ndicom: 48, + }, + }); + expect(handlers.onProgress).toHaveBeenCalledOnce(); + expect(handlers.onProgress).toHaveBeenLastCalledWith( + pacs_name, + SeriesInstanceUID, + 48, + ); + + server.send({ + pacs_name, + SeriesInstanceUID, + message: { + ndicom: 88, + }, + }); + expect(handlers.onProgress).toHaveBeenCalledTimes(2); + expect(handlers.onProgress).toHaveBeenLastCalledWith( + pacs_name, + SeriesInstanceUID, + 88, + ); + + server.send({ + pacs_name, + SeriesInstanceUID, + message: { + error: "stuck in chimney", + }, + }); + expect(handlers.onError).toHaveBeenCalledOnce(); + expect(handlers.onError).toHaveBeenLastCalledWith( + pacs_name, + SeriesInstanceUID, + "stuck in chimney", + ); + + server.send({ + pacs_name, + SeriesInstanceUID, + message: { + done: true, + }, + }); + expect(handlers.onDone).toHaveBeenCalledOnce(); + expect(handlers.onDone).toHaveBeenLastCalledWith( + pacs_name, + SeriesInstanceUID, + ); +}); + +/** + * Create a mock WebSockets server and client. + */ +async function createMockubeWs( + handlers: LonkHandlers, +): Promise<[WS, LonkClient]> { + const url = "ws://localhost:32585"; + const server = new WS(url, { jsonProtocol: true }); + const ws = new WebSocket(url); + const client = new LonkClient({ ws, ...handlers }); + + let callback: null | (([server, client]: [WS, LonkClient]) => void) = null; + const promise: Promise<[WS, LonkClient]> = new Promise((resolve) => { + callback = resolve; + }); + ws.onopen = () => callback && callback([server, client]); + return promise; +} diff --git a/src/api/lonk/client.ts b/src/api/lonk/client.ts new file mode 100644 index 000000000..1c5a4f0ba --- /dev/null +++ b/src/api/lonk/client.ts @@ -0,0 +1,129 @@ +import { + Lonk, + LonkDone, + LonkError, + LonkHandlers, + LonkProgress, + LonkSubscription, + SeriesKey, +} from "./types.ts"; +import deserialize from "./de.ts"; +import { pipe } from "fp-ts/function"; +import * as E from "fp-ts/Either"; +import * as T from "fp-ts/Task"; +import SeriesMap from "./seriesMap.ts"; + +/** + * `LonkClient` wraps a {@link WebSocket}, routing incoming JSON messages + * to corresponding functions of {@link LonkHandlers}. + */ +class LonkClient { + private readonly ws: WebSocket; + private readonly pendingSubscriptions: SeriesMap<null | (() => SeriesKey)>; + + public constructor({ + ws, + onDone, + onProgress, + onError, + }: LonkHandlers & { ws: WebSocket }) { + this.pendingSubscriptions = new SeriesMap(); + this.ws = ws; + this.ws.onmessage = (msg) => { + pipe( + msg.data, + deserialize, + E.map((data) => + this.routeMessage({ data, onDone, onProgress, onError }), + ), + ); + }; + } + + /** + * Subscribe to notifications for a series. + */ + public subscribe( + pacs_name: string, + SeriesInstanceUID: string, + ): Promise<SeriesKey> { + let callback = null; + const callbackTask: Promise<SeriesKey> = new Promise((resolve) => { + callback = () => resolve({ SeriesInstanceUID, pacs_name }); + }); + this.pendingSubscriptions.set(pacs_name, SeriesInstanceUID, callback); + const data = { + SeriesInstanceUID, + pacs_name, + action: "subscribe", + }; + this.ws.send(JSON.stringify(data)); + return callbackTask; + } + + private routeMessage({ + data, + onDone, + onProgress, + onError, + }: LonkHandlers & { data: Lonk<any> }) { + const { SeriesInstanceUID, pacs_name, message } = data; + // note: for performance reasons, this if-else chain is in + // descending order of case frequency. + if (isProgress(message)) { + onProgress(pacs_name, SeriesInstanceUID, message.ndicom); + } else if (isDone(message)) { + onDone(pacs_name, SeriesInstanceUID); + } else if (isSubscribed(message)) { + this.handleSubscriptionSuccess(pacs_name, SeriesInstanceUID); + } else if (isError(message)) { + onError(pacs_name, SeriesInstanceUID, message.error); + } else { + console.warn(`Unrecognized message: ${JSON.stringify(message)}`); + } + } + + private handleSubscriptionSuccess( + pacs_name: string, + SeriesInstanceUID: string, + ) { + const callback = this.pendingSubscriptions.pop( + pacs_name, + SeriesInstanceUID, + ); + if (callback === null) { + console.warn( + "Got subscription confirmation, but never requested subscription", + { pacs_name, SeriesInstanceUID }, + ); + } else { + callback(); + } + } + + /** + * Close the websocket. + */ + public close() { + this.ws.close(); + } +} + +function isSubscribed(msg: { [key: string]: any }): msg is LonkSubscription { + return "subscribed" in msg && msg.subscribed === true; +} + +function isDone(msg: { [key: string]: any }): msg is LonkDone { + return "done" in msg && msg.done === true; +} + +function isProgress(msg: { [key: string]: any }): msg is LonkProgress { + return "ndicom" in msg && Number.isInteger(msg.ndicom); +} + +function isError(msg: { [key: string]: any }): msg is LonkError { + return "error" in msg; +} + +export default LonkClient; +export type { LonkHandlers }; diff --git a/src/api/lonk/de.ts b/src/api/lonk/de.ts new file mode 100644 index 000000000..eeecb8427 --- /dev/null +++ b/src/api/lonk/de.ts @@ -0,0 +1,53 @@ +/** + * LONK data deserialization using fp-ts. + */ + +import * as E from "fp-ts/Either"; +import { Lonk } from "./types.ts"; +import { pipe } from "fp-ts/function"; +import * as J from "fp-ts/Json"; + +function deserialize(data: any): E.Either<string, Lonk<any>> { + return pipe( + data, + J.parse, + E.mapLeft(() => "Could not parse message as JSON"), + E.flatMap(validateRecord), + E.flatMap(validateLonk), + ); +} + +function validateLonk(obj: J.JsonRecord): E.Either<string, Lonk<any>> { + if (typeof obj.pacs_name !== "string") { + return E.left(`Missing or invalid 'pacs_name' in ${JSON.stringify(obj)}`); + } + if (typeof obj.SeriesInstanceUID !== "string") { + return E.left( + `Missing or invalid 'SeriesInstanceUID' in ${JSON.stringify(obj)}`, + ); + } + if (typeof obj.message !== "object" || jIsArray(obj)) { + return E.left(`Missing or invalid 'message' in ${JSON.stringify(obj)}`); + } + // @ts-ignore proper JSON deserialization is too tedious in TypeScript + return E.right(obj); +} + +function validateRecord(obj: J.Json): E.Either<string, J.JsonRecord> { + if (obj === null) { + return E.left("obj is null"); + } + if (typeof obj !== "object") { + return E.left("not an object"); + } + if (jIsArray(obj)) { + return E.left("is an array, expected a JsonRecord"); + } + return E.right(obj); +} + +function jIsArray(obj: J.JsonArray | any): obj is J.JsonArray { + return Array.isArray(obj); +} + +export default deserialize; diff --git a/src/api/lonk/index.ts b/src/api/lonk/index.ts new file mode 100644 index 000000000..cb3914749 --- /dev/null +++ b/src/api/lonk/index.ts @@ -0,0 +1,11 @@ +/** + * "Light Oxidicom NotifiKations" over WebSockets (LONK-WS) client. + * + * https://chrisproject.org/docs/oxidicom/lonk-ws + */ + +import LonkClient from "./client.ts"; +import { LonkHandlers } from "./types.ts"; + +export default LonkClient; +export type { LonkHandlers }; diff --git a/src/api/lonk/seriesMap.test.ts b/src/api/lonk/seriesMap.test.ts new file mode 100644 index 000000000..5e276bca4 --- /dev/null +++ b/src/api/lonk/seriesMap.test.ts @@ -0,0 +1,11 @@ +import { test, expect } from "vitest"; +import SeriesMap from "./seriesMap.ts"; + +test("SeriesMap", () => { + const map = new SeriesMap(); + expect(map.pop("MyPACS", "12345")).toBeNull(); + const data = {}; + map.set("MyPACS", "12345", data); + expect(map.pop("MyPACS", "12345")).toBe(data); + expect(map.pop("MyPACS", "12345")).toBeNull(); +}); diff --git a/src/api/lonk/seriesMap.ts b/src/api/lonk/seriesMap.ts new file mode 100644 index 000000000..cfc3ed7d8 --- /dev/null +++ b/src/api/lonk/seriesMap.ts @@ -0,0 +1,34 @@ +/** + * A wrapper around {@link Map} where the key is (pacs_name, SeriesInstanceUID). + */ +class SeriesMap<T> { + private readonly map: Map<string, T>; + + public constructor() { + this.map = new Map(); + } + + /** + * Set a value for a DICOM series. + */ + public set(pacs_name: string, SeriesInstanceUID: string, value: T) { + const key = this.keyOf(SeriesInstanceUID, pacs_name); + this.map.set(key, value); + } + + /** + * Get and remove a value for a DICOM series. + */ + public pop(pacs_name: string, SeriesInstanceUID: string): T | null { + const key = this.keyOf(SeriesInstanceUID, pacs_name); + const value = this.map.get(key); + this.map.delete(key); + return value || null; + } + + private keyOf(pacs_name: string, SeriesInstanceUID: string): string { + return JSON.stringify({ SeriesInstanceUID, pacs_name }); + } +} + +export default SeriesMap; diff --git a/src/api/lonk/types.ts b/src/api/lonk/types.ts new file mode 100644 index 000000000..5aaeb666e --- /dev/null +++ b/src/api/lonk/types.ts @@ -0,0 +1,92 @@ +/** + * LONK-WS JSON types. + * + * Documentation: https://chrisproject.org/docs/oxidicom/lonk-ws#messages + * + * Reference implementation: + * https://github.com/FNNDSC/ChRIS_ultron_backEnd/blob/cf95993886c22530190c23807b57d525f9d51f99/chris_backend/pacsfiles/lonk.py#L45-L102 + */ + +/** + * The metadata which uniquely identifies a DICOM series. + */ +type SeriesKey = { + SeriesInstanceUID: string; + pacs_name: string; +}; + +/** + * LONK "progress" message. + */ +type LonkProgress = { + /** + * Number of DICOM files stored by *oxidicom* so far. + */ + ndicom: number; +}; + +/** + * LONK "error" message. + */ +type LonkError = { + /** + * Error message originating from *oxidicom*. + */ + error: string; +}; + +/** + * LONK "done" message. + */ +type LonkDone = { + done: true; +}; + +/** + * LONK-WS "subscription" message. + */ +type LonkSubscription = { + subscribed: true; +}; + +/** + * Oxidicom notification message data. + */ +type LonkMessageData = LonkDone | LonkProgress | LonkError | LonkSubscription; + +/** + * Notification from oxidicom about a DICOM series. + */ +type Lonk<T extends { [key: string]: any }> = { + SeriesInstanceUID: string; + pacs_name: string; + message: T; +}; + +/** + * Handler functions for the various types of LONK protocol messages. + */ +type LonkHandlers = { + onDone: (pacs_name: string, SeriesInstanceUID: string) => void; + onProgress: ( + pacs_name: string, + SeriesInstanceUID: string, + ndicom: number, + ) => void; + onError: ( + pacs_name: string, + SeriesInstanceUID: string, + error: string, + ) => void; +}; + +export type { + LonkDone, + LonkProgress, + LonkError, + LonkSubscription, + LonkMessageData, + Lonk, + LonkHandlers, + SeriesKey, +}; From 288aea3a61d85d4bbfb58a67980a06300cef9656 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Mon, 16 Sep 2024 04:48:13 -0400 Subject: [PATCH 193/337] Add new fp-ts PfdcmClient --- .env | 5 +- README.md | 11 + biome.json | 2 +- src/api/pfdcm/client.ts | 246 ++++++++++ .../pfdcm/generated/.openapi-generator-ignore | 23 + .../pfdcm/generated/.openapi-generator/FILES | 49 ++ .../generated/.openapi-generator/VERSION | 1 + src/api/pfdcm/generated/apis/DicomApi.ts | 76 ++++ .../apis/ListenerSubsystemServicesApi.ts | 303 +++++++++++++ .../pfdcm/generated/apis/PACSQRServicesApi.ts | 127 ++++++ .../generated/apis/PACSSetupServicesApi.ts | 198 ++++++++ .../apis/PfdcmEnvironmentalDetailApi.ts | 100 ++++ .../generated/apis/SMDBSetupServicesApi.ts | 305 +++++++++++++ src/api/pfdcm/generated/apis/index.ts | 8 + src/api/pfdcm/generated/index.ts | 5 + src/api/pfdcm/generated/models/AboutModel.ts | 76 ++++ .../BodyPACSPypxApiV1PACSSyncPypxPost.ts | 92 ++++ ...CSServiceHandlerApiV1PACSThreadPypxPost.ts | 92 ++++ ...CSobjPortUpdateApiV1PACSservicePortPost.ts | 77 ++++ src/api/pfdcm/generated/models/DcmtkCore.ts | 106 +++++ .../pfdcm/generated/models/DcmtkDBPutModel.ts | 68 +++ .../generated/models/DcmtkDBReturnModel.ts | 101 +++++ src/api/pfdcm/generated/models/Dicom.ts | 60 +++ src/api/pfdcm/generated/models/EchoModel.ts | 61 +++ .../generated/models/HTTPValidationError.ts | 67 +++ src/api/pfdcm/generated/models/HelloModel.ts | 97 ++++ .../generated/models/ListenerDBreturnModel.ts | 83 ++++ .../generated/models/ListenerHandlerStatus.ts | 61 +++ .../pfdcm/generated/models/LocationInner.ts | 42 ++ .../models/ModelsListenerModelTime.ts | 61 +++ .../models/ModelsListenerModelValueStr.ts | 60 +++ .../models/ModelsPacsQRmodelValueStr.ts | 60 +++ .../models/ModelsPacsSetupModelTime.ts | 61 +++ .../models/ModelsPacsSetupModelValueStr.ts | 60 +++ .../models/ModelsSmdbSetupModelValueStr.ts | 60 +++ src/api/pfdcm/generated/models/PACSasync.ts | 87 ++++ .../pfdcm/generated/models/PACSdbPutModel.ts | 68 +++ .../generated/models/PACSdbReturnModel.ts | 101 +++++ .../pfdcm/generated/models/PACSqueryCore.ts | 252 +++++++++++ .../pfdcm/generated/models/PACSsetupCore.ts | 92 ++++ .../pfdcm/generated/models/SMDBFsConfig.ts | 83 ++++ src/api/pfdcm/generated/models/SMDBFsCore.ts | 61 +++ .../generated/models/SMDBFsReturnModel.ts | 85 ++++ .../pfdcm/generated/models/SMDBcubeConfig.ts | 83 ++++ .../pfdcm/generated/models/SMDBcubeCore.ts | 79 ++++ .../generated/models/SMDBcubeReturnModel.ts | 85 ++++ .../pfdcm/generated/models/SMDBswiftConfig.ts | 83 ++++ .../pfdcm/generated/models/SMDBswiftCore.ts | 79 ++++ .../pfdcm/generated/models/SysInfoModel.ts | 148 ++++++ .../pfdcm/generated/models/ValidationError.ts | 86 ++++ src/api/pfdcm/generated/models/XinetdCore.ts | 124 +++++ .../generated/models/XinetdDBPutModel.ts | 68 +++ .../generated/models/XinetdDBReturnModel.ts | 101 +++++ src/api/pfdcm/generated/models/index.ts | 40 ++ src/api/pfdcm/generated/runtime.ts | 426 ++++++++++++++++++ src/api/pfdcm/index.test.ts | 38 ++ src/api/pfdcm/index.ts | 3 + src/api/pfdcm/models.ts | 88 ++++ src/components/Pacs/pfdcmClient.tsx | 2 +- 59 files changed, 5262 insertions(+), 4 deletions(-) create mode 100644 src/api/pfdcm/client.ts create mode 100644 src/api/pfdcm/generated/.openapi-generator-ignore create mode 100644 src/api/pfdcm/generated/.openapi-generator/FILES create mode 100644 src/api/pfdcm/generated/.openapi-generator/VERSION create mode 100644 src/api/pfdcm/generated/apis/DicomApi.ts create mode 100644 src/api/pfdcm/generated/apis/ListenerSubsystemServicesApi.ts create mode 100644 src/api/pfdcm/generated/apis/PACSQRServicesApi.ts create mode 100644 src/api/pfdcm/generated/apis/PACSSetupServicesApi.ts create mode 100644 src/api/pfdcm/generated/apis/PfdcmEnvironmentalDetailApi.ts create mode 100644 src/api/pfdcm/generated/apis/SMDBSetupServicesApi.ts create mode 100644 src/api/pfdcm/generated/apis/index.ts create mode 100644 src/api/pfdcm/generated/index.ts create mode 100644 src/api/pfdcm/generated/models/AboutModel.ts create mode 100644 src/api/pfdcm/generated/models/BodyPACSPypxApiV1PACSSyncPypxPost.ts create mode 100644 src/api/pfdcm/generated/models/BodyPACSServiceHandlerApiV1PACSThreadPypxPost.ts create mode 100644 src/api/pfdcm/generated/models/BodyPACSobjPortUpdateApiV1PACSservicePortPost.ts create mode 100644 src/api/pfdcm/generated/models/DcmtkCore.ts create mode 100644 src/api/pfdcm/generated/models/DcmtkDBPutModel.ts create mode 100644 src/api/pfdcm/generated/models/DcmtkDBReturnModel.ts create mode 100644 src/api/pfdcm/generated/models/Dicom.ts create mode 100644 src/api/pfdcm/generated/models/EchoModel.ts create mode 100644 src/api/pfdcm/generated/models/HTTPValidationError.ts create mode 100644 src/api/pfdcm/generated/models/HelloModel.ts create mode 100644 src/api/pfdcm/generated/models/ListenerDBreturnModel.ts create mode 100644 src/api/pfdcm/generated/models/ListenerHandlerStatus.ts create mode 100644 src/api/pfdcm/generated/models/LocationInner.ts create mode 100644 src/api/pfdcm/generated/models/ModelsListenerModelTime.ts create mode 100644 src/api/pfdcm/generated/models/ModelsListenerModelValueStr.ts create mode 100644 src/api/pfdcm/generated/models/ModelsPacsQRmodelValueStr.ts create mode 100644 src/api/pfdcm/generated/models/ModelsPacsSetupModelTime.ts create mode 100644 src/api/pfdcm/generated/models/ModelsPacsSetupModelValueStr.ts create mode 100644 src/api/pfdcm/generated/models/ModelsSmdbSetupModelValueStr.ts create mode 100644 src/api/pfdcm/generated/models/PACSasync.ts create mode 100644 src/api/pfdcm/generated/models/PACSdbPutModel.ts create mode 100644 src/api/pfdcm/generated/models/PACSdbReturnModel.ts create mode 100644 src/api/pfdcm/generated/models/PACSqueryCore.ts create mode 100644 src/api/pfdcm/generated/models/PACSsetupCore.ts create mode 100644 src/api/pfdcm/generated/models/SMDBFsConfig.ts create mode 100644 src/api/pfdcm/generated/models/SMDBFsCore.ts create mode 100644 src/api/pfdcm/generated/models/SMDBFsReturnModel.ts create mode 100644 src/api/pfdcm/generated/models/SMDBcubeConfig.ts create mode 100644 src/api/pfdcm/generated/models/SMDBcubeCore.ts create mode 100644 src/api/pfdcm/generated/models/SMDBcubeReturnModel.ts create mode 100644 src/api/pfdcm/generated/models/SMDBswiftConfig.ts create mode 100644 src/api/pfdcm/generated/models/SMDBswiftCore.ts create mode 100644 src/api/pfdcm/generated/models/SysInfoModel.ts create mode 100644 src/api/pfdcm/generated/models/ValidationError.ts create mode 100644 src/api/pfdcm/generated/models/XinetdCore.ts create mode 100644 src/api/pfdcm/generated/models/XinetdDBPutModel.ts create mode 100644 src/api/pfdcm/generated/models/XinetdDBReturnModel.ts create mode 100644 src/api/pfdcm/generated/models/index.ts create mode 100644 src/api/pfdcm/generated/runtime.ts create mode 100644 src/api/pfdcm/index.test.ts create mode 100644 src/api/pfdcm/index.ts create mode 100644 src/api/pfdcm/models.ts diff --git a/.env b/.env index 1a5679867..684c225fb 100644 --- a/.env +++ b/.env @@ -8,7 +8,8 @@ VITE_CHRIS_UI_AUTH_URL="http://localhost:8000/api/v1/auth-token/" VITE_ALPHA_FEATURES='production' # Set PFDCM_URL to the root url of the running pfdcm instance -VITE_PFDCM_URL="http://localhost:4005/" +# note: must *not* have trailing slash +VITE_PFDCM_URL="http://localhost:4005" # (optional) set URL of an OHIF browser which has the same studies as the PFDCM # VITE_OHIF_URL="http://localhost:8042/ohif/" @@ -18,4 +19,4 @@ VITE_PFDCM_SWIFTKEY="local" VITE_SOURCEMAP='false' # Set URL for the store if you want to see it in the sidebar -VITE_CHRIS_STORE_URL= "http://rc-live.tch.harvard.edu:32222/api/v1/" \ No newline at end of file +VITE_CHRIS_STORE_URL= "http://rc-live.tch.harvard.edu:32222/api/v1/" diff --git a/README.md b/README.md index ff14c6d2d..5dd705fc6 100644 --- a/README.md +++ b/README.md @@ -133,6 +133,17 @@ npm run test:e2e:local # run tests using "local" backend For more information, consult the wiki: https://github.com/FNNDSC/ChRIS_ui/wiki/E2E-Testing-with-Playwright +## Pfdcm Client + +The code in `src/api/pfdcm/generated` were automatically generated using the [OpenAPI generator](https://openapi-generator.tech). + +```shell +docker run --rm --net=host -u "$(id -u):$(id -g)" \ + -v "$(npm prefix)/src:/src" \ + docker.io/openapitools/openapi-generator-cli:v7.8.0 \ + generate -g typescript-fetch -i http://localhost:4005/openapi.json -o /src/api/pfdcm/generated +``` + <!-- Image Links --> [license-badge]: https://img.shields.io/github/license/fnndsc/chris_ui.svg diff --git a/biome.json b/biome.json index 667c21416..ac80de028 100644 --- a/biome.json +++ b/biome.json @@ -10,7 +10,7 @@ "tsconfig*.json", "testing/*.mjs" ], - "ignore": ["package-lock.json"] + "ignore": ["package-lock.json", "pfdcm/generated"] }, "organizeImports": { "enabled": true diff --git a/src/api/pfdcm/client.ts b/src/api/pfdcm/client.ts new file mode 100644 index 000000000..0214a63e5 --- /dev/null +++ b/src/api/pfdcm/client.ts @@ -0,0 +1,246 @@ +/** + * Wrapper for the OpenAPI-generated client, providing better typing + * and a fp-ts API. + */ + +import * as TE from "fp-ts/TaskEither"; +import * as E from "fp-ts/Either"; +import { + Configuration, + PACSPypxApiV1PACSSyncPypxPostRequest, + PACSQRServicesApi, + PACSSetupServicesApi, + PACSqueryCore, + PACSServiceHandlerApiV1PACSThreadPypxPostRequest, + PACSasync, +} from "./generated"; +import { pipe } from "fp-ts/function"; +import { PypxFind, PypxTag, Series, StudyAndSeries } from "./models.ts"; +import { parse as parseDate } from "date-fns"; + +/** + * PFDCM client. + */ +class PfdcmClient { + private readonly servicesClient: PACSSetupServicesApi; + private readonly qrClient: PACSQRServicesApi; + constructor(configuration?: Configuration) { + this.servicesClient = new PACSSetupServicesApi(configuration); + this.qrClient = new PACSQRServicesApi(configuration); + } + + /** + * Get list of PACS services which this PFDCM is configured to speak with. + */ + public getPacsServices(): TE.TaskEither<Error, ReadonlyArray<string>> { + return TE.tryCatch( + () => this.servicesClient.serviceListGetApiV1PACSserviceListGet(), + E.toError, + ); + } + + private find( + service: string, + query: PACSqueryCore, + ): TE.TaskEither<Error, PypxFind> { + const params: PACSPypxApiV1PACSSyncPypxPostRequest = { + bodyPACSPypxApiV1PACSSyncPypxPost: { + pACSservice: { + value: service, + }, + listenerService: { + value: "default", + }, + pACSdirective: query, + }, + }; + return pipe( + TE.tryCatch( + () => this.qrClient.pACSPypxApiV1PACSSyncPypxPost(params), + E.toError, + ), + TE.flatMap(validateFindResponseData), + TE.flatMap(validateStatusIsTrue), + ); + } + + /** + * Search for PACS data. + * @param service which PACS service to search for. See {@link PfdcmClient.getPacsServices} + * @param query PACS query + */ + public query( + service: string, + query: PACSqueryCore, + ): TE.TaskEither<Error, ReadonlyArray<StudyAndSeries>> { + return pipe(this.find(service, query), TE.map(simplifyResponse)); + } + + public retrieve( + service: string, + query: PACSqueryCore, + ): TE.TaskEither<Error, PACSasync> { + const params: PACSServiceHandlerApiV1PACSThreadPypxPostRequest = { + bodyPACSServiceHandlerApiV1PACSThreadPypxPost: { + pACSservice: { + value: service, + }, + listenerService: { + value: "default", + }, + pACSdirective: { + ...query, + withFeedBack: true, + then: "retrieve", + }, + }, + }; + return pipe( + TE.tryCatch( + () => this.qrClient.pACSServiceHandlerApiV1PACSThreadPypxPost(params), + E.toError, + ), + TE.flatMap((data) => { + // @ts-ignore OpenAPI spec of PFDCM is incomplete + if (data.response.job.status) { + return TE.right(data); + } + const error = new Error("PYPX job status is missing or false"); + return TE.left(error); + }), + ); + } +} + +function validateFindResponseData(data: any): TE.TaskEither<Error, PypxFind> { + if (isFindResponseData(data)) { + return TE.right(data); + } + const error = new Error("Invalid response from PFDCM"); + return TE.left(error); +} + +function isFindResponseData(data: any): data is PypxFind { + return ( + typeof data.status === "boolean" && "message" in data && "pypx" in data + ); +} + +/** + * Validate that all the "status" fields are `true` + * (this is a convention that Rudolph uses for error handling + * instead of HTTP status codes, exceptions, and/or monads). + */ +function validateStatusIsTrue(data: PypxFind): TE.TaskEither<Error, PypxFind> { + if (!data.status) { + const error = new Error("PFDCM response status=false"); + return TE.left(error); + } + if (data.pypx.status !== "success") { + const error = new Error("PFDCM response pypx.status=false"); + return TE.left(error); + } + for (const study of data.pypx.data) { + if (!Array.isArray(study.series)) { + continue; + } + for (const series of study.series) { + if (series.status.value !== "success") { + const error = new Error( + `PFDCM response pypx...status is false for SeriesInstanceUID=${series?.SeriesInstanceUID?.value}`, + ); + return TE.left(error); + } + } + } + return TE.right(data); +} + +/** + * Re-organizes the data from pypx's response. + */ +function simplifyResponse(data: PypxFind): ReadonlyArray<StudyAndSeries> { + return data.pypx.data.map(simplifyPypxStudyData); +} + +function simplifyPypxStudyData(data: { + [key: string]: PypxTag | ReadonlyArray<{ [key: string]: PypxTag }>; +}): StudyAndSeries { + const study = { + SpecificCharacterSet: getValue(data, "SpecificCharacterSet"), + StudyDate: getValue(data, "StudyDate"), + AccessionNumber: getValue(data, "AccessionNumber"), + RetrieveAETitle: getValue(data, "RetrieveAETitle"), + ModalitiesInStudy: getValue(data, "ModalitiesInStudy"), + StudyDescription: getValue(data, "StudyDescription"), + PatientName: getValue(data, "PatientName"), + PatientID: getValue(data, "PatientID"), + PatientBirthDate: + "value" in data.PatientBirthDate + ? parseDicomDate(data.PatientBirthDate) + : null, + PatientSex: getValue(data, "PatientSex"), + PatientAge: parseFloat(getValue(data, "PatientAge")), + ProtocolName: getValue(data, "ProtocolName"), + AcquisitionProtocolName: getValue(data, "AcquisitionProtocolName"), + AcquisitionProtocolDescription: getValue( + data, + "AcquisitionProtocolDescription", + ), + StudyInstanceUID: getValue(data, "StudyInstanceUID"), + NumberOfStudyRelatedSeries: getValue(data, "NumberOfStudyRelatedSeries"), + PerformedStationAETitle: getValue(data, "PerformedStationAETitle"), + }; + const series = Array.isArray(data.series) + ? data.series.map(simplifyPypxSeriesData) + : []; + return { study, series }; +} + +function getValue( + data: { [key: string]: PypxTag | ReadonlyArray<{ [key: string]: PypxTag }> }, + name: string, +): string { + if ("value" in data[name]) { + return "" + data[name].value; + } + return ""; +} + +function simplifyPypxSeriesData(data: { [key: string]: PypxTag }): Series { + return { + SpecificCharacterSet: "" + data.SpecificCharacterSet.value, + StudyDate: "" + data.StudyDate.value, + SeriesDate: "" + data.SeriesDate.value, + AccessionNumber: "" + data.AccessionNumber.value, + RetrieveAETitle: "" + data.RetrieveAETitle.value, + Modality: "" + data.Modality.value, + StudyDescription: "" + data.StudyDescription.value, + SeriesDescription: "" + data.SeriesDescription.value, + PatientName: "" + data.PatientName.value, + PatientID: "" + data.PatientID.value, + PatientBirthDate: parseDicomDate(data.PatientBirthDate), + PatientSex: "" + data.PatientSex.value, + PatientAge: parseFloat("" + data.PatientAge.value), + ProtocolName: "" + data.ProtocolName.value, + AcquisitionProtocolName: "" + data.AcquisitionProtocolName.value, + AcquisitionProtocolDescription: + "" + data.AcquisitionProtocolDescription.value, + StudyInstanceUID: "" + data.StudyInstanceUID.value, + SeriesInstanceUID: "" + data.SeriesInstanceUID.value, + NumberOfSeriesRelatedInstances: + "" + data.NumberOfSeriesRelatedInstances.value, + PerformedStationAETitle: "" + data.PerformedStationAETitle.value, + }; +} + +/** + * Parse a DICOM DateString (DS), which is in YYYYMMDD format. + * + * https://dicom.nema.org/medical/dicom/current/output/chtml/part05/sect_6.2.html + */ +function parseDicomDate(tag: PypxTag): Date { + return parseDate("" + tag.value, "yyyyMMdd", new Date()); +} + +export { PfdcmClient }; diff --git a/src/api/pfdcm/generated/.openapi-generator-ignore b/src/api/pfdcm/generated/.openapi-generator-ignore new file mode 100644 index 000000000..7484ee590 --- /dev/null +++ b/src/api/pfdcm/generated/.openapi-generator-ignore @@ -0,0 +1,23 @@ +# OpenAPI Generator Ignore +# Generated by openapi-generator https://github.com/openapitools/openapi-generator + +# Use this file to prevent files from being overwritten by the generator. +# The patterns follow closely to .gitignore or .dockerignore. + +# As an example, the C# client generator defines ApiClient.cs. +# You can make changes and tell OpenAPI Generator to ignore just this file by uncommenting the following line: +#ApiClient.cs + +# You can match any string of characters against a directory, file or extension with a single asterisk (*): +#foo/*/qux +# The above matches foo/bar/qux and foo/baz/qux, but not foo/bar/baz/qux + +# You can recursively match patterns against a directory, file or extension with a double asterisk (**): +#foo/**/qux +# This matches foo/bar/qux, foo/baz/qux, and foo/bar/baz/qux + +# You can also negate patterns with an exclamation (!). +# For example, you can ignore all files in a docs folder with the file extension .md: +#docs/*.md +# Then explicitly reverse the ignore rule for a single file: +#!docs/README.md diff --git a/src/api/pfdcm/generated/.openapi-generator/FILES b/src/api/pfdcm/generated/.openapi-generator/FILES new file mode 100644 index 000000000..f0703c692 --- /dev/null +++ b/src/api/pfdcm/generated/.openapi-generator/FILES @@ -0,0 +1,49 @@ +.openapi-generator-ignore +apis/DicomApi.ts +apis/ListenerSubsystemServicesApi.ts +apis/PACSQRServicesApi.ts +apis/PACSSetupServicesApi.ts +apis/PfdcmEnvironmentalDetailApi.ts +apis/SMDBSetupServicesApi.ts +apis/index.ts +index.ts +models/AboutModel.ts +models/BodyPACSPypxApiV1PACSSyncPypxPost.ts +models/BodyPACSServiceHandlerApiV1PACSThreadPypxPost.ts +models/BodyPACSobjPortUpdateApiV1PACSservicePortPost.ts +models/DcmtkCore.ts +models/DcmtkDBPutModel.ts +models/DcmtkDBReturnModel.ts +models/Dicom.ts +models/EchoModel.ts +models/HTTPValidationError.ts +models/HelloModel.ts +models/ListenerDBreturnModel.ts +models/ListenerHandlerStatus.ts +models/LocationInner.ts +models/ModelsListenerModelTime.ts +models/ModelsListenerModelValueStr.ts +models/ModelsPacsQRmodelValueStr.ts +models/ModelsPacsSetupModelTime.ts +models/ModelsPacsSetupModelValueStr.ts +models/ModelsSmdbSetupModelValueStr.ts +models/PACSasync.ts +models/PACSdbPutModel.ts +models/PACSdbReturnModel.ts +models/PACSqueryCore.ts +models/PACSsetupCore.ts +models/SMDBFsConfig.ts +models/SMDBFsCore.ts +models/SMDBFsReturnModel.ts +models/SMDBcubeConfig.ts +models/SMDBcubeCore.ts +models/SMDBcubeReturnModel.ts +models/SMDBswiftConfig.ts +models/SMDBswiftCore.ts +models/SysInfoModel.ts +models/ValidationError.ts +models/XinetdCore.ts +models/XinetdDBPutModel.ts +models/XinetdDBReturnModel.ts +models/index.ts +runtime.ts diff --git a/src/api/pfdcm/generated/.openapi-generator/VERSION b/src/api/pfdcm/generated/.openapi-generator/VERSION new file mode 100644 index 000000000..09a6d3084 --- /dev/null +++ b/src/api/pfdcm/generated/.openapi-generator/VERSION @@ -0,0 +1 @@ +7.8.0 diff --git a/src/api/pfdcm/generated/apis/DicomApi.ts b/src/api/pfdcm/generated/apis/DicomApi.ts new file mode 100644 index 000000000..bdca8314f --- /dev/null +++ b/src/api/pfdcm/generated/apis/DicomApi.ts @@ -0,0 +1,76 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + + +import * as runtime from '../runtime'; +import type { + Dicom, + HTTPValidationError, +} from '../models/index'; +import { + DicomFromJSON, + DicomToJSON, + HTTPValidationErrorFromJSON, + HTTPValidationErrorToJSON, +} from '../models/index'; + +export interface ReadDicomApiV1DicomGetRequest { + mrn: number; +} + +/** + * + */ +export class DicomApi extends runtime.BaseAPI { + + /** + * Fake meaningless response + * Get dicom images for a patient. + */ + async readDicomApiV1DicomGetRaw(requestParameters: ReadDicomApiV1DicomGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<Dicom>> { + if (requestParameters['mrn'] == null) { + throw new runtime.RequiredError( + 'mrn', + 'Required parameter "mrn" was null or undefined when calling readDicomApiV1DicomGet().' + ); + } + + const queryParameters: any = {}; + + if (requestParameters['mrn'] != null) { + queryParameters['mrn'] = requestParameters['mrn']; + } + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/dicom/`, + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => DicomFromJSON(jsonValue)); + } + + /** + * Fake meaningless response + * Get dicom images for a patient. + */ + async readDicomApiV1DicomGet(requestParameters: ReadDicomApiV1DicomGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<Dicom> { + const response = await this.readDicomApiV1DicomGetRaw(requestParameters, initOverrides); + return await response.value(); + } + +} diff --git a/src/api/pfdcm/generated/apis/ListenerSubsystemServicesApi.ts b/src/api/pfdcm/generated/apis/ListenerSubsystemServicesApi.ts new file mode 100644 index 000000000..f65195e4d --- /dev/null +++ b/src/api/pfdcm/generated/apis/ListenerSubsystemServicesApi.ts @@ -0,0 +1,303 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + + +import * as runtime from '../runtime'; +import type { + DcmtkDBPutModel, + DcmtkDBReturnModel, + HTTPValidationError, + ListenerDBreturnModel, + ListenerHandlerStatus, + ModelsListenerModelValueStr, + XinetdDBPutModel, + XinetdDBReturnModel, +} from '../models/index'; +import { + DcmtkDBPutModelFromJSON, + DcmtkDBPutModelToJSON, + DcmtkDBReturnModelFromJSON, + DcmtkDBReturnModelToJSON, + HTTPValidationErrorFromJSON, + HTTPValidationErrorToJSON, + ListenerDBreturnModelFromJSON, + ListenerDBreturnModelToJSON, + ListenerHandlerStatusFromJSON, + ListenerHandlerStatusToJSON, + ModelsListenerModelValueStrFromJSON, + ModelsListenerModelValueStrToJSON, + XinetdDBPutModelFromJSON, + XinetdDBPutModelToJSON, + XinetdDBReturnModelFromJSON, + XinetdDBReturnModelToJSON, +} from '../models/index'; + +export interface ItemPutDcmtkApiV1ListenerListenerObjNameDcmtkPutRequest { + listenerObjName: string; + dcmtkDBPutModel: DcmtkDBPutModel; +} + +export interface ItemPutXinetdApiV1ListenerListenerObjNameXinetdPutRequest { + listenerObjName: string; + xinetdDBPutModel: XinetdDBPutModel; +} + +export interface ListenerGetApiV1ListenerListenerObjNameGetRequest { + listenerObjName: string; +} + +export interface ListenerInitializeApiV1ListenerInitializePostRequest { + modelsListenerModelValueStr: ModelsListenerModelValueStr; +} + +export interface ListenerStatusGetApiV1ListenerStatusListenerObjNameGetRequest { + listenerObjName: string; +} + +/** + * + */ +export class ListenerSubsystemServicesApi extends runtime.BaseAPI { + + /** + * PUT an entire dcmtk object. If the object already exists, overwrite. If it does not exist, append to the space of available objects. Note that overwriting an existing object will replace ALL the `info` fields, thus leaving a default of `\"string\"` will literally put the text `string` for a specific field. Parameters ---------- - `listenerObjName` : internal name of (new) object - `dcmtkInfo` : new values for object internals + * PUT a dcmtk update + */ + async itemPutDcmtkApiV1ListenerListenerObjNameDcmtkPutRaw(requestParameters: ItemPutDcmtkApiV1ListenerListenerObjNameDcmtkPutRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<DcmtkDBReturnModel>> { + if (requestParameters['listenerObjName'] == null) { + throw new runtime.RequiredError( + 'listenerObjName', + 'Required parameter "listenerObjName" was null or undefined when calling itemPutDcmtkApiV1ListenerListenerObjNameDcmtkPut().' + ); + } + + if (requestParameters['dcmtkDBPutModel'] == null) { + throw new runtime.RequiredError( + 'dcmtkDBPutModel', + 'Required parameter "dcmtkDBPutModel" was null or undefined when calling itemPutDcmtkApiV1ListenerListenerObjNameDcmtkPut().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + headerParameters['Content-Type'] = 'application/json'; + + const response = await this.request({ + path: `/api/v1/listener/{listenerObjName}/dcmtk/`.replace(`{${"listenerObjName"}}`, encodeURIComponent(String(requestParameters['listenerObjName']))), + method: 'PUT', + headers: headerParameters, + query: queryParameters, + body: DcmtkDBPutModelToJSON(requestParameters['dcmtkDBPutModel']), + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => DcmtkDBReturnModelFromJSON(jsonValue)); + } + + /** + * PUT an entire dcmtk object. If the object already exists, overwrite. If it does not exist, append to the space of available objects. Note that overwriting an existing object will replace ALL the `info` fields, thus leaving a default of `\"string\"` will literally put the text `string` for a specific field. Parameters ---------- - `listenerObjName` : internal name of (new) object - `dcmtkInfo` : new values for object internals + * PUT a dcmtk update + */ + async itemPutDcmtkApiV1ListenerListenerObjNameDcmtkPut(requestParameters: ItemPutDcmtkApiV1ListenerListenerObjNameDcmtkPutRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<DcmtkDBReturnModel> { + const response = await this.itemPutDcmtkApiV1ListenerListenerObjNameDcmtkPutRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * PUT an entire xinetd object. If the object already exists, overwrite. If it does not exist, append to the space of available objects. Note that overwriting an existing object will replace ALL the `info` fields, thus leaving a default of `\"string\"` will literally put the text `string` for a specific field. Parameters ---------- - `listenerObjName` : internal name of (new) object - `xinetdInfo` : new values for object internals + * PUT an xinetd update + */ + async itemPutXinetdApiV1ListenerListenerObjNameXinetdPutRaw(requestParameters: ItemPutXinetdApiV1ListenerListenerObjNameXinetdPutRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<XinetdDBReturnModel>> { + if (requestParameters['listenerObjName'] == null) { + throw new runtime.RequiredError( + 'listenerObjName', + 'Required parameter "listenerObjName" was null or undefined when calling itemPutXinetdApiV1ListenerListenerObjNameXinetdPut().' + ); + } + + if (requestParameters['xinetdDBPutModel'] == null) { + throw new runtime.RequiredError( + 'xinetdDBPutModel', + 'Required parameter "xinetdDBPutModel" was null or undefined when calling itemPutXinetdApiV1ListenerListenerObjNameXinetdPut().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + headerParameters['Content-Type'] = 'application/json'; + + const response = await this.request({ + path: `/api/v1/listener/{listenerObjName}/xinetd/`.replace(`{${"listenerObjName"}}`, encodeURIComponent(String(requestParameters['listenerObjName']))), + method: 'PUT', + headers: headerParameters, + query: queryParameters, + body: XinetdDBPutModelToJSON(requestParameters['xinetdDBPutModel']), + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => XinetdDBReturnModelFromJSON(jsonValue)); + } + + /** + * PUT an entire xinetd object. If the object already exists, overwrite. If it does not exist, append to the space of available objects. Note that overwriting an existing object will replace ALL the `info` fields, thus leaving a default of `\"string\"` will literally put the text `string` for a specific field. Parameters ---------- - `listenerObjName` : internal name of (new) object - `xinetdInfo` : new values for object internals + * PUT an xinetd update + */ + async itemPutXinetdApiV1ListenerListenerObjNameXinetdPut(requestParameters: ItemPutXinetdApiV1ListenerListenerObjNameXinetdPutRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<XinetdDBReturnModel> { + const response = await this.itemPutXinetdApiV1ListenerListenerObjNameXinetdPutRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * GET the information pertinent to a `listenerObjName` (for a list of valid `listenerObjName` GET the `serviceList`) + * GET information for a given listener object + */ + async listenerGetApiV1ListenerListenerObjNameGetRaw(requestParameters: ListenerGetApiV1ListenerListenerObjNameGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<ListenerDBreturnModel>> { + if (requestParameters['listenerObjName'] == null) { + throw new runtime.RequiredError( + 'listenerObjName', + 'Required parameter "listenerObjName" was null or undefined when calling listenerGetApiV1ListenerListenerObjNameGet().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/listener/{listenerObjName}/`.replace(`{${"listenerObjName"}}`, encodeURIComponent(String(requestParameters['listenerObjName']))), + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => ListenerDBreturnModelFromJSON(jsonValue)); + } + + /** + * GET the information pertinent to a `listenerObjName` (for a list of valid `listenerObjName` GET the `serviceList`) + * GET information for a given listener object + */ + async listenerGetApiV1ListenerListenerObjNameGet(requestParameters: ListenerGetApiV1ListenerListenerObjNameGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<ListenerDBreturnModel> { + const response = await this.listenerGetApiV1ListenerListenerObjNameGetRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * Initialize the listener service for the object __objToInitialize__. Parameters ---------- - `objToInitialize`: name of the listener object to initialize Return ------ - dictionary response from the initialization process NOTE: A return / response model is not specified since the return from the call is variable. + * POST a signal to the listener `objToInitialize`, triggering a self initialization + */ + async listenerInitializeApiV1ListenerInitializePostRaw(requestParameters: ListenerInitializeApiV1ListenerInitializePostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<any>> { + if (requestParameters['modelsListenerModelValueStr'] == null) { + throw new runtime.RequiredError( + 'modelsListenerModelValueStr', + 'Required parameter "modelsListenerModelValueStr" was null or undefined when calling listenerInitializeApiV1ListenerInitializePost().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + headerParameters['Content-Type'] = 'application/json'; + + const response = await this.request({ + path: `/api/v1/listener/initialize/`, + method: 'POST', + headers: headerParameters, + query: queryParameters, + body: ModelsListenerModelValueStrToJSON(requestParameters['modelsListenerModelValueStr']), + }, initOverrides); + + if (this.isJsonMime(response.headers.get('content-type'))) { + return new runtime.JSONApiResponse<any>(response); + } else { + return new runtime.TextApiResponse(response) as any; + } + } + + /** + * Initialize the listener service for the object __objToInitialize__. Parameters ---------- - `objToInitialize`: name of the listener object to initialize Return ------ - dictionary response from the initialization process NOTE: A return / response model is not specified since the return from the call is variable. + * POST a signal to the listener `objToInitialize`, triggering a self initialization + */ + async listenerInitializeApiV1ListenerInitializePost(requestParameters: ListenerInitializeApiV1ListenerInitializePostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<any> { + const response = await this.listenerInitializeApiV1ListenerInitializePostRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * GET the listener susystem information pertinent to a `listenerObjName`. This information indicates if the subsystem has been initialized and therefore if it is ready to accept incoming data. (for a list of valid `listenerObjName` GET the `serviceList`) + * GET the listener subsystem status of a given listener object + */ + async listenerStatusGetApiV1ListenerStatusListenerObjNameGetRaw(requestParameters: ListenerStatusGetApiV1ListenerStatusListenerObjNameGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<ListenerHandlerStatus>> { + if (requestParameters['listenerObjName'] == null) { + throw new runtime.RequiredError( + 'listenerObjName', + 'Required parameter "listenerObjName" was null or undefined when calling listenerStatusGetApiV1ListenerStatusListenerObjNameGet().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/listener/status/{listenerObjName}/`.replace(`{${"listenerObjName"}}`, encodeURIComponent(String(requestParameters['listenerObjName']))), + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => ListenerHandlerStatusFromJSON(jsonValue)); + } + + /** + * GET the listener susystem information pertinent to a `listenerObjName`. This information indicates if the subsystem has been initialized and therefore if it is ready to accept incoming data. (for a list of valid `listenerObjName` GET the `serviceList`) + * GET the listener subsystem status of a given listener object + */ + async listenerStatusGetApiV1ListenerStatusListenerObjNameGet(requestParameters: ListenerStatusGetApiV1ListenerStatusListenerObjNameGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<ListenerHandlerStatus> { + const response = await this.listenerStatusGetApiV1ListenerStatusListenerObjNameGetRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * GET the list of configured PACS services + * GET the list of configured listener services + */ + async serviceListGetApiV1ListenerListGetRaw(initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<Array<any>>> { + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/listener/list/`, + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse<any>(response); + } + + /** + * GET the list of configured PACS services + * GET the list of configured listener services + */ + async serviceListGetApiV1ListenerListGet(initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<Array<any>> { + const response = await this.serviceListGetApiV1ListenerListGetRaw(initOverrides); + return await response.value(); + } + +} diff --git a/src/api/pfdcm/generated/apis/PACSQRServicesApi.ts b/src/api/pfdcm/generated/apis/PACSQRServicesApi.ts new file mode 100644 index 000000000..3fc64594c --- /dev/null +++ b/src/api/pfdcm/generated/apis/PACSQRServicesApi.ts @@ -0,0 +1,127 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + + +import * as runtime from '../runtime'; +import type { + BodyPACSPypxApiV1PACSSyncPypxPost, + BodyPACSServiceHandlerApiV1PACSThreadPypxPost, + HTTPValidationError, + PACSasync, +} from '../models/index'; +import { + BodyPACSPypxApiV1PACSSyncPypxPostFromJSON, + BodyPACSPypxApiV1PACSSyncPypxPostToJSON, + BodyPACSServiceHandlerApiV1PACSThreadPypxPostFromJSON, + BodyPACSServiceHandlerApiV1PACSThreadPypxPostToJSON, + HTTPValidationErrorFromJSON, + HTTPValidationErrorToJSON, + PACSasyncFromJSON, + PACSasyncToJSON, +} from '../models/index'; + +export interface PACSPypxApiV1PACSSyncPypxPostRequest { + bodyPACSPypxApiV1PACSSyncPypxPost: BodyPACSPypxApiV1PACSSyncPypxPost; +} + +export interface PACSServiceHandlerApiV1PACSThreadPypxPostRequest { + bodyPACSServiceHandlerApiV1PACSThreadPypxPost: BodyPACSServiceHandlerApiV1PACSThreadPypxPost; +} + +/** + * + */ +export class PACSQRServicesApi extends runtime.BaseAPI { + + /** + * POST a retrieve to the `PACSservice`, and capture return communication using the `listenerService`. The client will only receive a return payload when the PACSdirective has completed its remote execution. Parameters ---------- - `PACSservice`: name of the internal PACS service to query - `listenerService`: name of the listener service to use locally - `PACSdirective`: the pypx directive object Return ------ - PACSqueryReturnModel + * Use this API route for STATUS operations and any others that block but which are \"short lived\". Since this is a synchronous operation, the call will only return on successful completion of the remote directive. + */ + async pACSPypxApiV1PACSSyncPypxPostRaw(requestParameters: PACSPypxApiV1PACSSyncPypxPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<any>> { + if (requestParameters['bodyPACSPypxApiV1PACSSyncPypxPost'] == null) { + throw new runtime.RequiredError( + 'bodyPACSPypxApiV1PACSSyncPypxPost', + 'Required parameter "bodyPACSPypxApiV1PACSSyncPypxPost" was null or undefined when calling pACSPypxApiV1PACSSyncPypxPost().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + headerParameters['Content-Type'] = 'application/json'; + + const response = await this.request({ + path: `/api/v1/PACS/sync/pypx/`, + method: 'POST', + headers: headerParameters, + query: queryParameters, + body: BodyPACSPypxApiV1PACSSyncPypxPostToJSON(requestParameters['bodyPACSPypxApiV1PACSSyncPypxPost']), + }, initOverrides); + + if (this.isJsonMime(response.headers.get('content-type'))) { + return new runtime.JSONApiResponse<any>(response); + } else { + return new runtime.TextApiResponse(response) as any; + } + } + + /** + * POST a retrieve to the `PACSservice`, and capture return communication using the `listenerService`. The client will only receive a return payload when the PACSdirective has completed its remote execution. Parameters ---------- - `PACSservice`: name of the internal PACS service to query - `listenerService`: name of the listener service to use locally - `PACSdirective`: the pypx directive object Return ------ - PACSqueryReturnModel + * Use this API route for STATUS operations and any others that block but which are \"short lived\". Since this is a synchronous operation, the call will only return on successful completion of the remote directive. + */ + async pACSPypxApiV1PACSSyncPypxPost(requestParameters: PACSPypxApiV1PACSSyncPypxPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<any> { + const response = await this.pACSPypxApiV1PACSSyncPypxPostRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * Handler into PACS calls for long-lived compute (retrieve/push/register) This is very thin and simple dispatching service that will either use the find module API, or will call the find module script. Anectodal testing has shown that the API calls might fail, possibly due to thread pool exhaustion? At time of writing, the CLI calls seem more reliable since they introduce a single-queue concept by explicitly waiting for a CLI px-find process to finish. While this means that status calls are somewhat blocked when a RPR job is in flight, for multiple series pulls, the retrieve/push/register workflow proceeds correctly. Args: PACSservice (pacsQRmodel.ValueStr): The PACS with which to communicate listenerService (pacsQRmodel.ValueStr): The listener service that receives PACS comms PACSdirective (pacsQRmodel.PACSqueryCore): The instructions to the PACS + * Use this API route for RETRIEVE, PUSH, REGISTER operations and any others that might be possibly \"long lived\". The actual processing is dispatched to a separate thread so that the client receives a return immediately. Clients should use a STATUS request on the same payload to determine realtime status of the operation. + */ + async pACSServiceHandlerApiV1PACSThreadPypxPostRaw(requestParameters: PACSServiceHandlerApiV1PACSThreadPypxPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<PACSasync>> { + if (requestParameters['bodyPACSServiceHandlerApiV1PACSThreadPypxPost'] == null) { + throw new runtime.RequiredError( + 'bodyPACSServiceHandlerApiV1PACSThreadPypxPost', + 'Required parameter "bodyPACSServiceHandlerApiV1PACSThreadPypxPost" was null or undefined when calling pACSServiceHandlerApiV1PACSThreadPypxPost().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + headerParameters['Content-Type'] = 'application/json'; + + const response = await this.request({ + path: `/api/v1/PACS/thread/pypx/`, + method: 'POST', + headers: headerParameters, + query: queryParameters, + body: BodyPACSServiceHandlerApiV1PACSThreadPypxPostToJSON(requestParameters['bodyPACSServiceHandlerApiV1PACSThreadPypxPost']), + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => PACSasyncFromJSON(jsonValue)); + } + + /** + * Handler into PACS calls for long-lived compute (retrieve/push/register) This is very thin and simple dispatching service that will either use the find module API, or will call the find module script. Anectodal testing has shown that the API calls might fail, possibly due to thread pool exhaustion? At time of writing, the CLI calls seem more reliable since they introduce a single-queue concept by explicitly waiting for a CLI px-find process to finish. While this means that status calls are somewhat blocked when a RPR job is in flight, for multiple series pulls, the retrieve/push/register workflow proceeds correctly. Args: PACSservice (pacsQRmodel.ValueStr): The PACS with which to communicate listenerService (pacsQRmodel.ValueStr): The listener service that receives PACS comms PACSdirective (pacsQRmodel.PACSqueryCore): The instructions to the PACS + * Use this API route for RETRIEVE, PUSH, REGISTER operations and any others that might be possibly \"long lived\". The actual processing is dispatched to a separate thread so that the client receives a return immediately. Clients should use a STATUS request on the same payload to determine realtime status of the operation. + */ + async pACSServiceHandlerApiV1PACSThreadPypxPost(requestParameters: PACSServiceHandlerApiV1PACSThreadPypxPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<PACSasync> { + const response = await this.pACSServiceHandlerApiV1PACSThreadPypxPostRaw(requestParameters, initOverrides); + return await response.value(); + } + +} diff --git a/src/api/pfdcm/generated/apis/PACSSetupServicesApi.ts b/src/api/pfdcm/generated/apis/PACSSetupServicesApi.ts new file mode 100644 index 000000000..0d463fc33 --- /dev/null +++ b/src/api/pfdcm/generated/apis/PACSSetupServicesApi.ts @@ -0,0 +1,198 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + + +import * as runtime from '../runtime'; +import type { + BodyPACSobjPortUpdateApiV1PACSservicePortPost, + HTTPValidationError, + PACSdbPutModel, + PACSdbReturnModel, +} from '../models/index'; +import { + BodyPACSobjPortUpdateApiV1PACSservicePortPostFromJSON, + BodyPACSobjPortUpdateApiV1PACSservicePortPostToJSON, + HTTPValidationErrorFromJSON, + HTTPValidationErrorToJSON, + PACSdbPutModelFromJSON, + PACSdbPutModelToJSON, + PACSdbReturnModelFromJSON, + PACSdbReturnModelToJSON, +} from '../models/index'; + +export interface PACSobjPortUpdateApiV1PACSservicePortPostRequest { + bodyPACSobjPortUpdateApiV1PACSservicePortPost: BodyPACSobjPortUpdateApiV1PACSservicePortPost; +} + +export interface PacsSetupGetApiV1PACSservicePACSobjNameGetRequest { + pACSobjName: string; +} + +export interface PacsSetupPutApiV1PACSservicePACSobjNamePutRequest { + pACSobjName: string; + pACSdbPutModel: PACSdbPutModel; +} + +/** + * + */ +export class PACSSetupServicesApi extends runtime.BaseAPI { + + /** + * Update the `server_port` of a given __objToUpdate__. This method is more exemplar than actually useful. Parameters ---------- - `objToUpdate`: name of the internal PACS object to update - `newPort`: port value string to re-assign in the internal object Return ------ - updated model of the `objToUpdate` + * POST a change to the listener `port` of the PACS `objToUpdate` + */ + async pACSobjPortUpdateApiV1PACSservicePortPostRaw(requestParameters: PACSobjPortUpdateApiV1PACSservicePortPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<PACSdbReturnModel>> { + if (requestParameters['bodyPACSobjPortUpdateApiV1PACSservicePortPost'] == null) { + throw new runtime.RequiredError( + 'bodyPACSobjPortUpdateApiV1PACSservicePortPost', + 'Required parameter "bodyPACSobjPortUpdateApiV1PACSservicePortPost" was null or undefined when calling pACSobjPortUpdateApiV1PACSservicePortPost().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + headerParameters['Content-Type'] = 'application/json'; + + const response = await this.request({ + path: `/api/v1/PACSservice/port/`, + method: 'POST', + headers: headerParameters, + query: queryParameters, + body: BodyPACSobjPortUpdateApiV1PACSservicePortPostToJSON(requestParameters['bodyPACSobjPortUpdateApiV1PACSservicePortPost']), + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => PACSdbReturnModelFromJSON(jsonValue)); + } + + /** + * Update the `server_port` of a given __objToUpdate__. This method is more exemplar than actually useful. Parameters ---------- - `objToUpdate`: name of the internal PACS object to update - `newPort`: port value string to re-assign in the internal object Return ------ - updated model of the `objToUpdate` + * POST a change to the listener `port` of the PACS `objToUpdate` + */ + async pACSobjPortUpdateApiV1PACSservicePortPost(requestParameters: PACSobjPortUpdateApiV1PACSservicePortPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<PACSdbReturnModel> { + const response = await this.pACSobjPortUpdateApiV1PACSservicePortPostRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * GET the setup info pertinent to a `pacsSetup` + * GET the information for a given PACS + */ + async pacsSetupGetApiV1PACSservicePACSobjNameGetRaw(requestParameters: PacsSetupGetApiV1PACSservicePACSobjNameGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<PACSdbReturnModel>> { + if (requestParameters['pACSobjName'] == null) { + throw new runtime.RequiredError( + 'pACSobjName', + 'Required parameter "pACSobjName" was null or undefined when calling pacsSetupGetApiV1PACSservicePACSobjNameGet().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/PACSservice/{PACSobjName}/`.replace(`{${"PACSobjName"}}`, encodeURIComponent(String(requestParameters['pACSobjName']))), + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => PACSdbReturnModelFromJSON(jsonValue)); + } + + /** + * GET the setup info pertinent to a `pacsSetup` + * GET the information for a given PACS + */ + async pacsSetupGetApiV1PACSservicePACSobjNameGet(requestParameters: PacsSetupGetApiV1PACSservicePACSobjNameGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<PACSdbReturnModel> { + const response = await this.pacsSetupGetApiV1PACSservicePACSobjNameGetRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * PUT an entire object. If the object already exists, overwrite. If it does not exist, append to the space of available objects. Note that overwriting an existing object will replace ALL the `info` fields, thus leaving a default of `\"string\"` will literally put the text `string` for a specific field. Parameters ---------- - `PACSobjName` : internal name of (new) object - `PACSsetupData` : new values for object internals + * PUT information to a (possibly new) PACS object + */ + async pacsSetupPutApiV1PACSservicePACSobjNamePutRaw(requestParameters: PacsSetupPutApiV1PACSservicePACSobjNamePutRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<PACSdbReturnModel>> { + if (requestParameters['pACSobjName'] == null) { + throw new runtime.RequiredError( + 'pACSobjName', + 'Required parameter "pACSobjName" was null or undefined when calling pacsSetupPutApiV1PACSservicePACSobjNamePut().' + ); + } + + if (requestParameters['pACSdbPutModel'] == null) { + throw new runtime.RequiredError( + 'pACSdbPutModel', + 'Required parameter "pACSdbPutModel" was null or undefined when calling pacsSetupPutApiV1PACSservicePACSobjNamePut().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + headerParameters['Content-Type'] = 'application/json'; + + const response = await this.request({ + path: `/api/v1/PACSservice/{PACSobjName}/`.replace(`{${"PACSobjName"}}`, encodeURIComponent(String(requestParameters['pACSobjName']))), + method: 'PUT', + headers: headerParameters, + query: queryParameters, + body: PACSdbPutModelToJSON(requestParameters['pACSdbPutModel']), + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => PACSdbReturnModelFromJSON(jsonValue)); + } + + /** + * PUT an entire object. If the object already exists, overwrite. If it does not exist, append to the space of available objects. Note that overwriting an existing object will replace ALL the `info` fields, thus leaving a default of `\"string\"` will literally put the text `string` for a specific field. Parameters ---------- - `PACSobjName` : internal name of (new) object - `PACSsetupData` : new values for object internals + * PUT information to a (possibly new) PACS object + */ + async pacsSetupPutApiV1PACSservicePACSobjNamePut(requestParameters: PacsSetupPutApiV1PACSservicePACSobjNamePutRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<PACSdbReturnModel> { + const response = await this.pacsSetupPutApiV1PACSservicePACSobjNamePutRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * GET the list of configured PACS services + * GET the list of configured PACS services + */ + async serviceListGetApiV1PACSserviceListGetRaw(initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<Array<any>>> { + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/PACSservice/list/`, + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse<any>(response); + } + + /** + * GET the list of configured PACS services + * GET the list of configured PACS services + */ + async serviceListGetApiV1PACSserviceListGet(initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<Array<any>> { + const response = await this.serviceListGetApiV1PACSserviceListGetRaw(initOverrides); + return await response.value(); + } + +} diff --git a/src/api/pfdcm/generated/apis/PfdcmEnvironmentalDetailApi.ts b/src/api/pfdcm/generated/apis/PfdcmEnvironmentalDetailApi.ts new file mode 100644 index 000000000..7d001e6b4 --- /dev/null +++ b/src/api/pfdcm/generated/apis/PfdcmEnvironmentalDetailApi.ts @@ -0,0 +1,100 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + + +import * as runtime from '../runtime'; +import type { + AboutModel, + HTTPValidationError, + HelloModel, +} from '../models/index'; +import { + AboutModelFromJSON, + AboutModelToJSON, + HTTPValidationErrorFromJSON, + HTTPValidationErrorToJSON, + HelloModelFromJSON, + HelloModelToJSON, +} from '../models/index'; + +export interface ReadHelloApiV1HelloGetRequest { + echoBack?: string; +} + +/** + * + */ +export class PfdcmEnvironmentalDetailApi extends runtime.BaseAPI { + + /** + * A description of this service. + * Read About + */ + async readAboutApiV1AboutGetRaw(initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<AboutModel>> { + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/about/`, + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => AboutModelFromJSON(jsonValue)); + } + + /** + * A description of this service. + * Read About + */ + async readAboutApiV1AboutGet(initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<AboutModel> { + const response = await this.readAboutApiV1AboutGetRaw(initOverrides); + return await response.value(); + } + + /** + * Produce some information like the OG pfcon + * Read Hello + */ + async readHelloApiV1HelloGetRaw(requestParameters: ReadHelloApiV1HelloGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<HelloModel>> { + const queryParameters: any = {}; + + if (requestParameters['echoBack'] != null) { + queryParameters['echoBack'] = requestParameters['echoBack']; + } + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/hello/`, + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => HelloModelFromJSON(jsonValue)); + } + + /** + * Produce some information like the OG pfcon + * Read Hello + */ + async readHelloApiV1HelloGet(requestParameters: ReadHelloApiV1HelloGetRequest = {}, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<HelloModel> { + const response = await this.readHelloApiV1HelloGetRaw(requestParameters, initOverrides); + return await response.value(); + } + +} diff --git a/src/api/pfdcm/generated/apis/SMDBSetupServicesApi.ts b/src/api/pfdcm/generated/apis/SMDBSetupServicesApi.ts new file mode 100644 index 000000000..555438937 --- /dev/null +++ b/src/api/pfdcm/generated/apis/SMDBSetupServicesApi.ts @@ -0,0 +1,305 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + + +import * as runtime from '../runtime'; +import type { + HTTPValidationError, + SMDBFsConfig, + SMDBFsReturnModel, + SMDBcubeConfig, + SMDBcubeReturnModel, + SMDBswiftConfig, +} from '../models/index'; +import { + HTTPValidationErrorFromJSON, + HTTPValidationErrorToJSON, + SMDBFsConfigFromJSON, + SMDBFsConfigToJSON, + SMDBFsReturnModelFromJSON, + SMDBFsReturnModelToJSON, + SMDBcubeConfigFromJSON, + SMDBcubeConfigToJSON, + SMDBcubeReturnModelFromJSON, + SMDBcubeReturnModelToJSON, + SMDBswiftConfigFromJSON, + SMDBswiftConfigToJSON, +} from '../models/index'; + +export interface CubeResourceGetApiV1SMDBCUBECubeResourceGetRequest { + cubeResource: string; +} + +export interface SMDBobjCubeUpdateApiV1SMDBCUBEPostRequest { + sMDBcubeConfig: SMDBcubeConfig; +} + +export interface SMDBobjFsUpdateApiV1SMDBFSPostRequest { + sMDBFsConfig: SMDBFsConfig; +} + +export interface SMDBobjSwiftUpdateApiV1SMDBSwiftPostRequest { + sMDBswiftConfig: SMDBswiftConfig; +} + +export interface StorageResourceGetApiV1SMDBStorageStorageResourceGetRequest { + storageResource: string; +} + +/** + * + */ +export class SMDBSetupServicesApi extends runtime.BaseAPI { + + /** + * GET the list of configured SMDB CUBE services + * GET the list of configured SMDB CUBE services + */ + async cubeListGetApiV1SMDBCUBEListGetRaw(initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<Array<any>>> { + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/SMDB/CUBE/list/`, + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse<any>(response); + } + + /** + * GET the list of configured SMDB CUBE services + * GET the list of configured SMDB CUBE services + */ + async cubeListGetApiV1SMDBCUBEListGet(initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<Array<any>> { + const response = await this.cubeListGetApiV1SMDBCUBEListGetRaw(initOverrides); + return await response.value(); + } + + /** + * GET detail info on a given SMDB CUBE resource + * GET detail on a specific CUBE resource + */ + async cubeResourceGetApiV1SMDBCUBECubeResourceGetRaw(requestParameters: CubeResourceGetApiV1SMDBCUBECubeResourceGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<SMDBcubeReturnModel>> { + if (requestParameters['cubeResource'] == null) { + throw new runtime.RequiredError( + 'cubeResource', + 'Required parameter "cubeResource" was null or undefined when calling cubeResourceGetApiV1SMDBCUBECubeResourceGet().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/SMDB/CUBE/{cubeResource}/`.replace(`{${"cubeResource"}}`, encodeURIComponent(String(requestParameters['cubeResource']))), + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => SMDBcubeReturnModelFromJSON(jsonValue)); + } + + /** + * GET detail info on a given SMDB CUBE resource + * GET detail on a specific CUBE resource + */ + async cubeResourceGetApiV1SMDBCUBECubeResourceGet(requestParameters: CubeResourceGetApiV1SMDBCUBECubeResourceGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<SMDBcubeReturnModel> { + const response = await this.cubeResourceGetApiV1SMDBCUBECubeResourceGetRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * Update a CUBE resource within the SMDB module. Parameters ---------- - `swiftData`: an object with a name that defines a CUBE resource Return ------ - updated `CUBEdata` + * POST an update to a CUBE resource in the pypx SMDB object + */ + async sMDBobjCubeUpdateApiV1SMDBCUBEPostRaw(requestParameters: SMDBobjCubeUpdateApiV1SMDBCUBEPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<SMDBcubeReturnModel>> { + if (requestParameters['sMDBcubeConfig'] == null) { + throw new runtime.RequiredError( + 'sMDBcubeConfig', + 'Required parameter "sMDBcubeConfig" was null or undefined when calling sMDBobjCubeUpdateApiV1SMDBCUBEPost().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + headerParameters['Content-Type'] = 'application/json'; + + const response = await this.request({ + path: `/api/v1/SMDB/CUBE/`, + method: 'POST', + headers: headerParameters, + query: queryParameters, + body: SMDBcubeConfigToJSON(requestParameters['sMDBcubeConfig']), + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => SMDBcubeReturnModelFromJSON(jsonValue)); + } + + /** + * Update a CUBE resource within the SMDB module. Parameters ---------- - `swiftData`: an object with a name that defines a CUBE resource Return ------ - updated `CUBEdata` + * POST an update to a CUBE resource in the pypx SMDB object + */ + async sMDBobjCubeUpdateApiV1SMDBCUBEPost(requestParameters: SMDBobjCubeUpdateApiV1SMDBCUBEPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<SMDBcubeReturnModel> { + const response = await this.sMDBobjCubeUpdateApiV1SMDBCUBEPostRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * Update a FS storage resource within the SMDB module. Parameters ---------- - `FSData`: an object with a name that defines a swift resource Return ------ - updated `FSData` + * POST an update to a FS storage resource in the pypx SMDB object + */ + async sMDBobjFsUpdateApiV1SMDBFSPostRaw(requestParameters: SMDBobjFsUpdateApiV1SMDBFSPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<SMDBFsReturnModel>> { + if (requestParameters['sMDBFsConfig'] == null) { + throw new runtime.RequiredError( + 'sMDBFsConfig', + 'Required parameter "sMDBFsConfig" was null or undefined when calling sMDBobjFsUpdateApiV1SMDBFSPost().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + headerParameters['Content-Type'] = 'application/json'; + + const response = await this.request({ + path: `/api/v1/SMDB/FS/`, + method: 'POST', + headers: headerParameters, + query: queryParameters, + body: SMDBFsConfigToJSON(requestParameters['sMDBFsConfig']), + }, initOverrides); + + return new runtime.JSONApiResponse(response, (jsonValue) => SMDBFsReturnModelFromJSON(jsonValue)); + } + + /** + * Update a FS storage resource within the SMDB module. Parameters ---------- - `FSData`: an object with a name that defines a swift resource Return ------ - updated `FSData` + * POST an update to a FS storage resource in the pypx SMDB object + */ + async sMDBobjFsUpdateApiV1SMDBFSPost(requestParameters: SMDBobjFsUpdateApiV1SMDBFSPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<SMDBFsReturnModel> { + const response = await this.sMDBobjFsUpdateApiV1SMDBFSPostRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * Update a swift resource within the SMDB module. Parameters ---------- - `swiftData`: an object with a name that defines a swift resource Return ------ - updated `swiftData` + * POST an update to a swift resource in the pypx SMDB object + */ + async sMDBobjSwiftUpdateApiV1SMDBSwiftPostRaw(requestParameters: SMDBobjSwiftUpdateApiV1SMDBSwiftPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<object>> { + if (requestParameters['sMDBswiftConfig'] == null) { + throw new runtime.RequiredError( + 'sMDBswiftConfig', + 'Required parameter "sMDBswiftConfig" was null or undefined when calling sMDBobjSwiftUpdateApiV1SMDBSwiftPost().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + headerParameters['Content-Type'] = 'application/json'; + + const response = await this.request({ + path: `/api/v1/SMDB/swift/`, + method: 'POST', + headers: headerParameters, + query: queryParameters, + body: SMDBswiftConfigToJSON(requestParameters['sMDBswiftConfig']), + }, initOverrides); + + return new runtime.JSONApiResponse<any>(response); + } + + /** + * Update a swift resource within the SMDB module. Parameters ---------- - `swiftData`: an object with a name that defines a swift resource Return ------ - updated `swiftData` + * POST an update to a swift resource in the pypx SMDB object + */ + async sMDBobjSwiftUpdateApiV1SMDBSwiftPost(requestParameters: SMDBobjSwiftUpdateApiV1SMDBSwiftPostRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<object> { + const response = await this.sMDBobjSwiftUpdateApiV1SMDBSwiftPostRaw(requestParameters, initOverrides); + return await response.value(); + } + + /** + * GET the list of configured SMDB storage services + * GET the list of configured SMDB storage services + */ + async storageListGetApiV1SMDBStorageListGetRaw(initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<Array<any>>> { + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/SMDB/storage/list/`, + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse<any>(response); + } + + /** + * GET the list of configured SMDB storage services + * GET the list of configured SMDB storage services + */ + async storageListGetApiV1SMDBStorageListGet(initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<Array<any>> { + const response = await this.storageListGetApiV1SMDBStorageListGetRaw(initOverrides); + return await response.value(); + } + + /** + * GET detail info on a given SMDB storage resource + * GET detail on a specific storage resource + */ + async storageResourceGetApiV1SMDBStorageStorageResourceGetRaw(requestParameters: StorageResourceGetApiV1SMDBStorageStorageResourceGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<object>> { + if (requestParameters['storageResource'] == null) { + throw new runtime.RequiredError( + 'storageResource', + 'Required parameter "storageResource" was null or undefined when calling storageResourceGetApiV1SMDBStorageStorageResourceGet().' + ); + } + + const queryParameters: any = {}; + + const headerParameters: runtime.HTTPHeaders = {}; + + const response = await this.request({ + path: `/api/v1/SMDB/storage/{storageResource}/`.replace(`{${"storageResource"}}`, encodeURIComponent(String(requestParameters['storageResource']))), + method: 'GET', + headers: headerParameters, + query: queryParameters, + }, initOverrides); + + return new runtime.JSONApiResponse<any>(response); + } + + /** + * GET detail info on a given SMDB storage resource + * GET detail on a specific storage resource + */ + async storageResourceGetApiV1SMDBStorageStorageResourceGet(requestParameters: StorageResourceGetApiV1SMDBStorageStorageResourceGetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<object> { + const response = await this.storageResourceGetApiV1SMDBStorageStorageResourceGetRaw(requestParameters, initOverrides); + return await response.value(); + } + +} diff --git a/src/api/pfdcm/generated/apis/index.ts b/src/api/pfdcm/generated/apis/index.ts new file mode 100644 index 000000000..4c1bb7d95 --- /dev/null +++ b/src/api/pfdcm/generated/apis/index.ts @@ -0,0 +1,8 @@ +/* tslint:disable */ +/* eslint-disable */ +export * from './DicomApi'; +export * from './ListenerSubsystemServicesApi'; +export * from './PACSQRServicesApi'; +export * from './PACSSetupServicesApi'; +export * from './PfdcmEnvironmentalDetailApi'; +export * from './SMDBSetupServicesApi'; diff --git a/src/api/pfdcm/generated/index.ts b/src/api/pfdcm/generated/index.ts new file mode 100644 index 000000000..bebe8bbbe --- /dev/null +++ b/src/api/pfdcm/generated/index.ts @@ -0,0 +1,5 @@ +/* tslint:disable */ +/* eslint-disable */ +export * from './runtime'; +export * from './apis/index'; +export * from './models/index'; diff --git a/src/api/pfdcm/generated/models/AboutModel.ts b/src/api/pfdcm/generated/models/AboutModel.ts new file mode 100644 index 000000000..cc372b602 --- /dev/null +++ b/src/api/pfdcm/generated/models/AboutModel.ts @@ -0,0 +1,76 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * + * @export + * @interface AboutModel + */ +export interface AboutModel { + /** + * + * @type {string} + * @memberof AboutModel + */ + name?: string; + /** + * + * @type {string} + * @memberof AboutModel + */ + about?: string; + /** + * + * @type {string} + * @memberof AboutModel + */ + version?: string; +} + +/** + * Check if a given object implements the AboutModel interface. + */ +export function instanceOfAboutModel(value: object): value is AboutModel { + return true; +} + +export function AboutModelFromJSON(json: any): AboutModel { + return AboutModelFromJSONTyped(json, false); +} + +export function AboutModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): AboutModel { + if (json == null) { + return json; + } + return { + + 'name': json['name'] == null ? undefined : json['name'], + 'about': json['about'] == null ? undefined : json['about'], + 'version': json['version'] == null ? undefined : json['version'], + }; +} + +export function AboutModelToJSON(value?: AboutModel | null): any { + if (value == null) { + return value; + } + return { + + 'name': value['name'], + 'about': value['about'], + 'version': value['version'], + }; +} + diff --git a/src/api/pfdcm/generated/models/BodyPACSPypxApiV1PACSSyncPypxPost.ts b/src/api/pfdcm/generated/models/BodyPACSPypxApiV1PACSSyncPypxPost.ts new file mode 100644 index 000000000..fc5ef707a --- /dev/null +++ b/src/api/pfdcm/generated/models/BodyPACSPypxApiV1PACSSyncPypxPost.ts @@ -0,0 +1,92 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { PACSqueryCore } from './PACSqueryCore'; +import { + PACSqueryCoreFromJSON, + PACSqueryCoreFromJSONTyped, + PACSqueryCoreToJSON, +} from './PACSqueryCore'; +import type { ModelsPacsQRmodelValueStr } from './ModelsPacsQRmodelValueStr'; +import { + ModelsPacsQRmodelValueStrFromJSON, + ModelsPacsQRmodelValueStrFromJSONTyped, + ModelsPacsQRmodelValueStrToJSON, +} from './ModelsPacsQRmodelValueStr'; + +/** + * + * @export + * @interface BodyPACSPypxApiV1PACSSyncPypxPost + */ +export interface BodyPACSPypxApiV1PACSSyncPypxPost { + /** + * + * @type {ModelsPacsQRmodelValueStr} + * @memberof BodyPACSPypxApiV1PACSSyncPypxPost + */ + pACSservice: ModelsPacsQRmodelValueStr; + /** + * + * @type {ModelsPacsQRmodelValueStr} + * @memberof BodyPACSPypxApiV1PACSSyncPypxPost + */ + listenerService: ModelsPacsQRmodelValueStr; + /** + * + * @type {PACSqueryCore} + * @memberof BodyPACSPypxApiV1PACSSyncPypxPost + */ + pACSdirective: PACSqueryCore; +} + +/** + * Check if a given object implements the BodyPACSPypxApiV1PACSSyncPypxPost interface. + */ +export function instanceOfBodyPACSPypxApiV1PACSSyncPypxPost(value: object): value is BodyPACSPypxApiV1PACSSyncPypxPost { + if (!('pACSservice' in value) || value['pACSservice'] === undefined) return false; + if (!('listenerService' in value) || value['listenerService'] === undefined) return false; + if (!('pACSdirective' in value) || value['pACSdirective'] === undefined) return false; + return true; +} + +export function BodyPACSPypxApiV1PACSSyncPypxPostFromJSON(json: any): BodyPACSPypxApiV1PACSSyncPypxPost { + return BodyPACSPypxApiV1PACSSyncPypxPostFromJSONTyped(json, false); +} + +export function BodyPACSPypxApiV1PACSSyncPypxPostFromJSONTyped(json: any, ignoreDiscriminator: boolean): BodyPACSPypxApiV1PACSSyncPypxPost { + if (json == null) { + return json; + } + return { + + 'pACSservice': ModelsPacsQRmodelValueStrFromJSON(json['PACSservice']), + 'listenerService': ModelsPacsQRmodelValueStrFromJSON(json['listenerService']), + 'pACSdirective': PACSqueryCoreFromJSON(json['PACSdirective']), + }; +} + +export function BodyPACSPypxApiV1PACSSyncPypxPostToJSON(value?: BodyPACSPypxApiV1PACSSyncPypxPost | null): any { + if (value == null) { + return value; + } + return { + + 'PACSservice': ModelsPacsQRmodelValueStrToJSON(value['pACSservice']), + 'listenerService': ModelsPacsQRmodelValueStrToJSON(value['listenerService']), + 'PACSdirective': PACSqueryCoreToJSON(value['pACSdirective']), + }; +} + diff --git a/src/api/pfdcm/generated/models/BodyPACSServiceHandlerApiV1PACSThreadPypxPost.ts b/src/api/pfdcm/generated/models/BodyPACSServiceHandlerApiV1PACSThreadPypxPost.ts new file mode 100644 index 000000000..dd9b1085f --- /dev/null +++ b/src/api/pfdcm/generated/models/BodyPACSServiceHandlerApiV1PACSThreadPypxPost.ts @@ -0,0 +1,92 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { PACSqueryCore } from './PACSqueryCore'; +import { + PACSqueryCoreFromJSON, + PACSqueryCoreFromJSONTyped, + PACSqueryCoreToJSON, +} from './PACSqueryCore'; +import type { ModelsPacsQRmodelValueStr } from './ModelsPacsQRmodelValueStr'; +import { + ModelsPacsQRmodelValueStrFromJSON, + ModelsPacsQRmodelValueStrFromJSONTyped, + ModelsPacsQRmodelValueStrToJSON, +} from './ModelsPacsQRmodelValueStr'; + +/** + * + * @export + * @interface BodyPACSServiceHandlerApiV1PACSThreadPypxPost + */ +export interface BodyPACSServiceHandlerApiV1PACSThreadPypxPost { + /** + * + * @type {ModelsPacsQRmodelValueStr} + * @memberof BodyPACSServiceHandlerApiV1PACSThreadPypxPost + */ + pACSservice: ModelsPacsQRmodelValueStr; + /** + * + * @type {ModelsPacsQRmodelValueStr} + * @memberof BodyPACSServiceHandlerApiV1PACSThreadPypxPost + */ + listenerService: ModelsPacsQRmodelValueStr; + /** + * + * @type {PACSqueryCore} + * @memberof BodyPACSServiceHandlerApiV1PACSThreadPypxPost + */ + pACSdirective: PACSqueryCore; +} + +/** + * Check if a given object implements the BodyPACSServiceHandlerApiV1PACSThreadPypxPost interface. + */ +export function instanceOfBodyPACSServiceHandlerApiV1PACSThreadPypxPost(value: object): value is BodyPACSServiceHandlerApiV1PACSThreadPypxPost { + if (!('pACSservice' in value) || value['pACSservice'] === undefined) return false; + if (!('listenerService' in value) || value['listenerService'] === undefined) return false; + if (!('pACSdirective' in value) || value['pACSdirective'] === undefined) return false; + return true; +} + +export function BodyPACSServiceHandlerApiV1PACSThreadPypxPostFromJSON(json: any): BodyPACSServiceHandlerApiV1PACSThreadPypxPost { + return BodyPACSServiceHandlerApiV1PACSThreadPypxPostFromJSONTyped(json, false); +} + +export function BodyPACSServiceHandlerApiV1PACSThreadPypxPostFromJSONTyped(json: any, ignoreDiscriminator: boolean): BodyPACSServiceHandlerApiV1PACSThreadPypxPost { + if (json == null) { + return json; + } + return { + + 'pACSservice': ModelsPacsQRmodelValueStrFromJSON(json['PACSservice']), + 'listenerService': ModelsPacsQRmodelValueStrFromJSON(json['listenerService']), + 'pACSdirective': PACSqueryCoreFromJSON(json['PACSdirective']), + }; +} + +export function BodyPACSServiceHandlerApiV1PACSThreadPypxPostToJSON(value?: BodyPACSServiceHandlerApiV1PACSThreadPypxPost | null): any { + if (value == null) { + return value; + } + return { + + 'PACSservice': ModelsPacsQRmodelValueStrToJSON(value['pACSservice']), + 'listenerService': ModelsPacsQRmodelValueStrToJSON(value['listenerService']), + 'PACSdirective': PACSqueryCoreToJSON(value['pACSdirective']), + }; +} + diff --git a/src/api/pfdcm/generated/models/BodyPACSobjPortUpdateApiV1PACSservicePortPost.ts b/src/api/pfdcm/generated/models/BodyPACSobjPortUpdateApiV1PACSservicePortPost.ts new file mode 100644 index 000000000..b139ee347 --- /dev/null +++ b/src/api/pfdcm/generated/models/BodyPACSobjPortUpdateApiV1PACSservicePortPost.ts @@ -0,0 +1,77 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { ModelsPacsSetupModelValueStr } from './ModelsPacsSetupModelValueStr'; +import { + ModelsPacsSetupModelValueStrFromJSON, + ModelsPacsSetupModelValueStrFromJSONTyped, + ModelsPacsSetupModelValueStrToJSON, +} from './ModelsPacsSetupModelValueStr'; + +/** + * + * @export + * @interface BodyPACSobjPortUpdateApiV1PACSservicePortPost + */ +export interface BodyPACSobjPortUpdateApiV1PACSservicePortPost { + /** + * + * @type {ModelsPacsSetupModelValueStr} + * @memberof BodyPACSobjPortUpdateApiV1PACSservicePortPost + */ + objToUpdate: ModelsPacsSetupModelValueStr; + /** + * + * @type {ModelsPacsSetupModelValueStr} + * @memberof BodyPACSobjPortUpdateApiV1PACSservicePortPost + */ + newPort: ModelsPacsSetupModelValueStr; +} + +/** + * Check if a given object implements the BodyPACSobjPortUpdateApiV1PACSservicePortPost interface. + */ +export function instanceOfBodyPACSobjPortUpdateApiV1PACSservicePortPost(value: object): value is BodyPACSobjPortUpdateApiV1PACSservicePortPost { + if (!('objToUpdate' in value) || value['objToUpdate'] === undefined) return false; + if (!('newPort' in value) || value['newPort'] === undefined) return false; + return true; +} + +export function BodyPACSobjPortUpdateApiV1PACSservicePortPostFromJSON(json: any): BodyPACSobjPortUpdateApiV1PACSservicePortPost { + return BodyPACSobjPortUpdateApiV1PACSservicePortPostFromJSONTyped(json, false); +} + +export function BodyPACSobjPortUpdateApiV1PACSservicePortPostFromJSONTyped(json: any, ignoreDiscriminator: boolean): BodyPACSobjPortUpdateApiV1PACSservicePortPost { + if (json == null) { + return json; + } + return { + + 'objToUpdate': ModelsPacsSetupModelValueStrFromJSON(json['objToUpdate']), + 'newPort': ModelsPacsSetupModelValueStrFromJSON(json['newPort']), + }; +} + +export function BodyPACSobjPortUpdateApiV1PACSservicePortPostToJSON(value?: BodyPACSobjPortUpdateApiV1PACSservicePortPost | null): any { + if (value == null) { + return value; + } + return { + + 'objToUpdate': ModelsPacsSetupModelValueStrToJSON(value['objToUpdate']), + 'newPort': ModelsPacsSetupModelValueStrToJSON(value['newPort']), + }; +} + diff --git a/src/api/pfdcm/generated/models/DcmtkCore.ts b/src/api/pfdcm/generated/models/DcmtkCore.ts new file mode 100644 index 000000000..dfc5011f1 --- /dev/null +++ b/src/api/pfdcm/generated/models/DcmtkCore.ts @@ -0,0 +1,106 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * + * @export + * @interface DcmtkCore + */ +export interface DcmtkCore { + /** + * + * @type {string} + * @memberof DcmtkCore + */ + storescu: string; + /** + * + * @type {string} + * @memberof DcmtkCore + */ + storescp: string; + /** + * + * @type {string} + * @memberof DcmtkCore + */ + findscu: string; + /** + * + * @type {string} + * @memberof DcmtkCore + */ + movescu: string; + /** + * + * @type {string} + * @memberof DcmtkCore + */ + echoscu: string; + /** + * + * @type {string} + * @memberof DcmtkCore + */ + receiver: string; +} + +/** + * Check if a given object implements the DcmtkCore interface. + */ +export function instanceOfDcmtkCore(value: object): value is DcmtkCore { + if (!('storescu' in value) || value['storescu'] === undefined) return false; + if (!('storescp' in value) || value['storescp'] === undefined) return false; + if (!('findscu' in value) || value['findscu'] === undefined) return false; + if (!('movescu' in value) || value['movescu'] === undefined) return false; + if (!('echoscu' in value) || value['echoscu'] === undefined) return false; + if (!('receiver' in value) || value['receiver'] === undefined) return false; + return true; +} + +export function DcmtkCoreFromJSON(json: any): DcmtkCore { + return DcmtkCoreFromJSONTyped(json, false); +} + +export function DcmtkCoreFromJSONTyped(json: any, ignoreDiscriminator: boolean): DcmtkCore { + if (json == null) { + return json; + } + return { + + 'storescu': json['storescu'], + 'storescp': json['storescp'], + 'findscu': json['findscu'], + 'movescu': json['movescu'], + 'echoscu': json['echoscu'], + 'receiver': json['receiver'], + }; +} + +export function DcmtkCoreToJSON(value?: DcmtkCore | null): any { + if (value == null) { + return value; + } + return { + + 'storescu': value['storescu'], + 'storescp': value['storescp'], + 'findscu': value['findscu'], + 'movescu': value['movescu'], + 'echoscu': value['echoscu'], + 'receiver': value['receiver'], + }; +} + diff --git a/src/api/pfdcm/generated/models/DcmtkDBPutModel.ts b/src/api/pfdcm/generated/models/DcmtkDBPutModel.ts new file mode 100644 index 000000000..5f3dd82ae --- /dev/null +++ b/src/api/pfdcm/generated/models/DcmtkDBPutModel.ts @@ -0,0 +1,68 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { DcmtkCore } from './DcmtkCore'; +import { + DcmtkCoreFromJSON, + DcmtkCoreFromJSONTyped, + DcmtkCoreToJSON, +} from './DcmtkCore'; + +/** + * + * @export + * @interface DcmtkDBPutModel + */ +export interface DcmtkDBPutModel { + /** + * + * @type {DcmtkCore} + * @memberof DcmtkDBPutModel + */ + info: DcmtkCore; +} + +/** + * Check if a given object implements the DcmtkDBPutModel interface. + */ +export function instanceOfDcmtkDBPutModel(value: object): value is DcmtkDBPutModel { + if (!('info' in value) || value['info'] === undefined) return false; + return true; +} + +export function DcmtkDBPutModelFromJSON(json: any): DcmtkDBPutModel { + return DcmtkDBPutModelFromJSONTyped(json, false); +} + +export function DcmtkDBPutModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): DcmtkDBPutModel { + if (json == null) { + return json; + } + return { + + 'info': DcmtkCoreFromJSON(json['info']), + }; +} + +export function DcmtkDBPutModelToJSON(value?: DcmtkDBPutModel | null): any { + if (value == null) { + return value; + } + return { + + 'info': DcmtkCoreToJSON(value['info']), + }; +} + diff --git a/src/api/pfdcm/generated/models/DcmtkDBReturnModel.ts b/src/api/pfdcm/generated/models/DcmtkDBReturnModel.ts new file mode 100644 index 000000000..ca92687ef --- /dev/null +++ b/src/api/pfdcm/generated/models/DcmtkDBReturnModel.ts @@ -0,0 +1,101 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { ModelsListenerModelTime } from './ModelsListenerModelTime'; +import { + ModelsListenerModelTimeFromJSON, + ModelsListenerModelTimeFromJSONTyped, + ModelsListenerModelTimeToJSON, +} from './ModelsListenerModelTime'; +import type { DcmtkCore } from './DcmtkCore'; +import { + DcmtkCoreFromJSON, + DcmtkCoreFromJSONTyped, + DcmtkCoreToJSON, +} from './DcmtkCore'; + +/** + * + * @export + * @interface DcmtkDBReturnModel + */ +export interface DcmtkDBReturnModel { + /** + * + * @type {DcmtkCore} + * @memberof DcmtkDBReturnModel + */ + info: DcmtkCore; + /** + * + * @type {ModelsListenerModelTime} + * @memberof DcmtkDBReturnModel + */ + timeCreated: ModelsListenerModelTime; + /** + * + * @type {ModelsListenerModelTime} + * @memberof DcmtkDBReturnModel + */ + timeModified: ModelsListenerModelTime; + /** + * + * @type {string} + * @memberof DcmtkDBReturnModel + */ + message: string; +} + +/** + * Check if a given object implements the DcmtkDBReturnModel interface. + */ +export function instanceOfDcmtkDBReturnModel(value: object): value is DcmtkDBReturnModel { + if (!('info' in value) || value['info'] === undefined) return false; + if (!('timeCreated' in value) || value['timeCreated'] === undefined) return false; + if (!('timeModified' in value) || value['timeModified'] === undefined) return false; + if (!('message' in value) || value['message'] === undefined) return false; + return true; +} + +export function DcmtkDBReturnModelFromJSON(json: any): DcmtkDBReturnModel { + return DcmtkDBReturnModelFromJSONTyped(json, false); +} + +export function DcmtkDBReturnModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): DcmtkDBReturnModel { + if (json == null) { + return json; + } + return { + + 'info': DcmtkCoreFromJSON(json['info']), + 'timeCreated': ModelsListenerModelTimeFromJSON(json['time_created']), + 'timeModified': ModelsListenerModelTimeFromJSON(json['time_modified']), + 'message': json['message'], + }; +} + +export function DcmtkDBReturnModelToJSON(value?: DcmtkDBReturnModel | null): any { + if (value == null) { + return value; + } + return { + + 'info': DcmtkCoreToJSON(value['info']), + 'time_created': ModelsListenerModelTimeToJSON(value['timeCreated']), + 'time_modified': ModelsListenerModelTimeToJSON(value['timeModified']), + 'message': value['message'], + }; +} + diff --git a/src/api/pfdcm/generated/models/Dicom.ts b/src/api/pfdcm/generated/models/Dicom.ts new file mode 100644 index 000000000..8e1c840ae --- /dev/null +++ b/src/api/pfdcm/generated/models/Dicom.ts @@ -0,0 +1,60 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * Not actually a DICOM, just some JSON. + * @export + * @interface Dicom + */ +export interface Dicom { + /** + * A longer sentence about nothing much + * @type {string} + * @memberof Dicom + */ + aCoolPicture?: string; +} + +/** + * Check if a given object implements the Dicom interface. + */ +export function instanceOfDicom(value: object): value is Dicom { + return true; +} + +export function DicomFromJSON(json: any): Dicom { + return DicomFromJSONTyped(json, false); +} + +export function DicomFromJSONTyped(json: any, ignoreDiscriminator: boolean): Dicom { + if (json == null) { + return json; + } + return { + + 'aCoolPicture': json['a_cool_picture'] == null ? undefined : json['a_cool_picture'], + }; +} + +export function DicomToJSON(value?: Dicom | null): any { + if (value == null) { + return value; + } + return { + + 'a_cool_picture': value['aCoolPicture'], + }; +} + diff --git a/src/api/pfdcm/generated/models/EchoModel.ts b/src/api/pfdcm/generated/models/EchoModel.ts new file mode 100644 index 000000000..78c2f39d1 --- /dev/null +++ b/src/api/pfdcm/generated/models/EchoModel.ts @@ -0,0 +1,61 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * Simply echo back whatever is POSTed to this API endpoing + * @export + * @interface EchoModel + */ +export interface EchoModel { + /** + * + * @type {string} + * @memberof EchoModel + */ + msg: string; +} + +/** + * Check if a given object implements the EchoModel interface. + */ +export function instanceOfEchoModel(value: object): value is EchoModel { + if (!('msg' in value) || value['msg'] === undefined) return false; + return true; +} + +export function EchoModelFromJSON(json: any): EchoModel { + return EchoModelFromJSONTyped(json, false); +} + +export function EchoModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): EchoModel { + if (json == null) { + return json; + } + return { + + 'msg': json['msg'], + }; +} + +export function EchoModelToJSON(value?: EchoModel | null): any { + if (value == null) { + return value; + } + return { + + 'msg': value['msg'], + }; +} + diff --git a/src/api/pfdcm/generated/models/HTTPValidationError.ts b/src/api/pfdcm/generated/models/HTTPValidationError.ts new file mode 100644 index 000000000..3547980fc --- /dev/null +++ b/src/api/pfdcm/generated/models/HTTPValidationError.ts @@ -0,0 +1,67 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { ValidationError } from './ValidationError'; +import { + ValidationErrorFromJSON, + ValidationErrorFromJSONTyped, + ValidationErrorToJSON, +} from './ValidationError'; + +/** + * + * @export + * @interface HTTPValidationError + */ +export interface HTTPValidationError { + /** + * + * @type {Array<ValidationError>} + * @memberof HTTPValidationError + */ + detail?: Array<ValidationError>; +} + +/** + * Check if a given object implements the HTTPValidationError interface. + */ +export function instanceOfHTTPValidationError(value: object): value is HTTPValidationError { + return true; +} + +export function HTTPValidationErrorFromJSON(json: any): HTTPValidationError { + return HTTPValidationErrorFromJSONTyped(json, false); +} + +export function HTTPValidationErrorFromJSONTyped(json: any, ignoreDiscriminator: boolean): HTTPValidationError { + if (json == null) { + return json; + } + return { + + 'detail': json['detail'] == null ? undefined : ((json['detail'] as Array<any>).map(ValidationErrorFromJSON)), + }; +} + +export function HTTPValidationErrorToJSON(value?: HTTPValidationError | null): any { + if (value == null) { + return value; + } + return { + + 'detail': value['detail'] == null ? undefined : ((value['detail'] as Array<any>).map(ValidationErrorToJSON)), + }; +} + diff --git a/src/api/pfdcm/generated/models/HelloModel.ts b/src/api/pfdcm/generated/models/HelloModel.ts new file mode 100644 index 000000000..b3af2d260 --- /dev/null +++ b/src/api/pfdcm/generated/models/HelloModel.ts @@ -0,0 +1,97 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { SysInfoModel } from './SysInfoModel'; +import { + SysInfoModelFromJSON, + SysInfoModelFromJSONTyped, + SysInfoModelToJSON, +} from './SysInfoModel'; +import type { EchoModel } from './EchoModel'; +import { + EchoModelFromJSON, + EchoModelFromJSONTyped, + EchoModelToJSON, +} from './EchoModel'; + +/** + * The model describing the relevant "hello" data + * @export + * @interface HelloModel + */ +export interface HelloModel { + /** + * + * @type {string} + * @memberof HelloModel + */ + name?: string; + /** + * + * @type {string} + * @memberof HelloModel + */ + version?: string; + /** + * + * @type {SysInfoModel} + * @memberof HelloModel + */ + sysinfo?: SysInfoModel; + /** + * + * @type {EchoModel} + * @memberof HelloModel + */ + echoBack?: EchoModel; +} + +/** + * Check if a given object implements the HelloModel interface. + */ +export function instanceOfHelloModel(value: object): value is HelloModel { + return true; +} + +export function HelloModelFromJSON(json: any): HelloModel { + return HelloModelFromJSONTyped(json, false); +} + +export function HelloModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): HelloModel { + if (json == null) { + return json; + } + return { + + 'name': json['name'] == null ? undefined : json['name'], + 'version': json['version'] == null ? undefined : json['version'], + 'sysinfo': json['sysinfo'] == null ? undefined : SysInfoModelFromJSON(json['sysinfo']), + 'echoBack': json['echoBack'] == null ? undefined : EchoModelFromJSON(json['echoBack']), + }; +} + +export function HelloModelToJSON(value?: HelloModel | null): any { + if (value == null) { + return value; + } + return { + + 'name': value['name'], + 'version': value['version'], + 'sysinfo': SysInfoModelToJSON(value['sysinfo']), + 'echoBack': EchoModelToJSON(value['echoBack']), + }; +} + diff --git a/src/api/pfdcm/generated/models/ListenerDBreturnModel.ts b/src/api/pfdcm/generated/models/ListenerDBreturnModel.ts new file mode 100644 index 000000000..dd2ed6429 --- /dev/null +++ b/src/api/pfdcm/generated/models/ListenerDBreturnModel.ts @@ -0,0 +1,83 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { XinetdDBReturnModel } from './XinetdDBReturnModel'; +import { + XinetdDBReturnModelFromJSON, + XinetdDBReturnModelFromJSONTyped, + XinetdDBReturnModelToJSON, +} from './XinetdDBReturnModel'; +import type { DcmtkDBReturnModel } from './DcmtkDBReturnModel'; +import { + DcmtkDBReturnModelFromJSON, + DcmtkDBReturnModelFromJSONTyped, + DcmtkDBReturnModelToJSON, +} from './DcmtkDBReturnModel'; + +/** + * A full model that is returned from a call to the DB + * @export + * @interface ListenerDBreturnModel + */ +export interface ListenerDBreturnModel { + /** + * + * @type {XinetdDBReturnModel} + * @memberof ListenerDBreturnModel + */ + xinetd: XinetdDBReturnModel; + /** + * + * @type {DcmtkDBReturnModel} + * @memberof ListenerDBreturnModel + */ + dcmtk: DcmtkDBReturnModel; +} + +/** + * Check if a given object implements the ListenerDBreturnModel interface. + */ +export function instanceOfListenerDBreturnModel(value: object): value is ListenerDBreturnModel { + if (!('xinetd' in value) || value['xinetd'] === undefined) return false; + if (!('dcmtk' in value) || value['dcmtk'] === undefined) return false; + return true; +} + +export function ListenerDBreturnModelFromJSON(json: any): ListenerDBreturnModel { + return ListenerDBreturnModelFromJSONTyped(json, false); +} + +export function ListenerDBreturnModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): ListenerDBreturnModel { + if (json == null) { + return json; + } + return { + + 'xinetd': XinetdDBReturnModelFromJSON(json['xinetd']), + 'dcmtk': DcmtkDBReturnModelFromJSON(json['dcmtk']), + }; +} + +export function ListenerDBreturnModelToJSON(value?: ListenerDBreturnModel | null): any { + if (value == null) { + return value; + } + return { + + 'xinetd': XinetdDBReturnModelToJSON(value['xinetd']), + 'dcmtk': DcmtkDBReturnModelToJSON(value['dcmtk']), + }; +} + diff --git a/src/api/pfdcm/generated/models/ListenerHandlerStatus.ts b/src/api/pfdcm/generated/models/ListenerHandlerStatus.ts new file mode 100644 index 000000000..5e5e5d5d0 --- /dev/null +++ b/src/api/pfdcm/generated/models/ListenerHandlerStatus.ts @@ -0,0 +1,61 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * + * @export + * @interface ListenerHandlerStatus + */ +export interface ListenerHandlerStatus { + /** + * + * @type {boolean} + * @memberof ListenerHandlerStatus + */ + status: boolean; +} + +/** + * Check if a given object implements the ListenerHandlerStatus interface. + */ +export function instanceOfListenerHandlerStatus(value: object): value is ListenerHandlerStatus { + if (!('status' in value) || value['status'] === undefined) return false; + return true; +} + +export function ListenerHandlerStatusFromJSON(json: any): ListenerHandlerStatus { + return ListenerHandlerStatusFromJSONTyped(json, false); +} + +export function ListenerHandlerStatusFromJSONTyped(json: any, ignoreDiscriminator: boolean): ListenerHandlerStatus { + if (json == null) { + return json; + } + return { + + 'status': json['status'], + }; +} + +export function ListenerHandlerStatusToJSON(value?: ListenerHandlerStatus | null): any { + if (value == null) { + return value; + } + return { + + 'status': value['status'], + }; +} + diff --git a/src/api/pfdcm/generated/models/LocationInner.ts b/src/api/pfdcm/generated/models/LocationInner.ts new file mode 100644 index 000000000..769423a85 --- /dev/null +++ b/src/api/pfdcm/generated/models/LocationInner.ts @@ -0,0 +1,42 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * + * @export + * @interface LocationInner + */ +export interface LocationInner { +} + +/** + * Check if a given object implements the LocationInner interface. + */ +export function instanceOfLocationInner(value: object): value is LocationInner { + return true; +} + +export function LocationInnerFromJSON(json: any): LocationInner { + return LocationInnerFromJSONTyped(json, false); +} + +export function LocationInnerFromJSONTyped(json: any, ignoreDiscriminator: boolean): LocationInner { + return json; +} + +export function LocationInnerToJSON(value?: LocationInner | null): any { + return value; +} + diff --git a/src/api/pfdcm/generated/models/ModelsListenerModelTime.ts b/src/api/pfdcm/generated/models/ModelsListenerModelTime.ts new file mode 100644 index 000000000..65d0d5d87 --- /dev/null +++ b/src/api/pfdcm/generated/models/ModelsListenerModelTime.ts @@ -0,0 +1,61 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * A simple model that has a time string field + * @export + * @interface ModelsListenerModelTime + */ +export interface ModelsListenerModelTime { + /** + * + * @type {string} + * @memberof ModelsListenerModelTime + */ + time: string; +} + +/** + * Check if a given object implements the ModelsListenerModelTime interface. + */ +export function instanceOfModelsListenerModelTime(value: object): value is ModelsListenerModelTime { + if (!('time' in value) || value['time'] === undefined) return false; + return true; +} + +export function ModelsListenerModelTimeFromJSON(json: any): ModelsListenerModelTime { + return ModelsListenerModelTimeFromJSONTyped(json, false); +} + +export function ModelsListenerModelTimeFromJSONTyped(json: any, ignoreDiscriminator: boolean): ModelsListenerModelTime { + if (json == null) { + return json; + } + return { + + 'time': json['time'], + }; +} + +export function ModelsListenerModelTimeToJSON(value?: ModelsListenerModelTime | null): any { + if (value == null) { + return value; + } + return { + + 'time': value['time'], + }; +} + diff --git a/src/api/pfdcm/generated/models/ModelsListenerModelValueStr.ts b/src/api/pfdcm/generated/models/ModelsListenerModelValueStr.ts new file mode 100644 index 000000000..38aa2a83a --- /dev/null +++ b/src/api/pfdcm/generated/models/ModelsListenerModelValueStr.ts @@ -0,0 +1,60 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * + * @export + * @interface ModelsListenerModelValueStr + */ +export interface ModelsListenerModelValueStr { + /** + * + * @type {string} + * @memberof ModelsListenerModelValueStr + */ + value?: string; +} + +/** + * Check if a given object implements the ModelsListenerModelValueStr interface. + */ +export function instanceOfModelsListenerModelValueStr(value: object): value is ModelsListenerModelValueStr { + return true; +} + +export function ModelsListenerModelValueStrFromJSON(json: any): ModelsListenerModelValueStr { + return ModelsListenerModelValueStrFromJSONTyped(json, false); +} + +export function ModelsListenerModelValueStrFromJSONTyped(json: any, ignoreDiscriminator: boolean): ModelsListenerModelValueStr { + if (json == null) { + return json; + } + return { + + 'value': json['value'] == null ? undefined : json['value'], + }; +} + +export function ModelsListenerModelValueStrToJSON(value?: ModelsListenerModelValueStr | null): any { + if (value == null) { + return value; + } + return { + + 'value': value['value'], + }; +} + diff --git a/src/api/pfdcm/generated/models/ModelsPacsQRmodelValueStr.ts b/src/api/pfdcm/generated/models/ModelsPacsQRmodelValueStr.ts new file mode 100644 index 000000000..19f0bb8a9 --- /dev/null +++ b/src/api/pfdcm/generated/models/ModelsPacsQRmodelValueStr.ts @@ -0,0 +1,60 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * + * @export + * @interface ModelsPacsQRmodelValueStr + */ +export interface ModelsPacsQRmodelValueStr { + /** + * + * @type {string} + * @memberof ModelsPacsQRmodelValueStr + */ + value?: string; +} + +/** + * Check if a given object implements the ModelsPacsQRmodelValueStr interface. + */ +export function instanceOfModelsPacsQRmodelValueStr(value: object): value is ModelsPacsQRmodelValueStr { + return true; +} + +export function ModelsPacsQRmodelValueStrFromJSON(json: any): ModelsPacsQRmodelValueStr { + return ModelsPacsQRmodelValueStrFromJSONTyped(json, false); +} + +export function ModelsPacsQRmodelValueStrFromJSONTyped(json: any, ignoreDiscriminator: boolean): ModelsPacsQRmodelValueStr { + if (json == null) { + return json; + } + return { + + 'value': json['value'] == null ? undefined : json['value'], + }; +} + +export function ModelsPacsQRmodelValueStrToJSON(value?: ModelsPacsQRmodelValueStr | null): any { + if (value == null) { + return value; + } + return { + + 'value': value['value'], + }; +} + diff --git a/src/api/pfdcm/generated/models/ModelsPacsSetupModelTime.ts b/src/api/pfdcm/generated/models/ModelsPacsSetupModelTime.ts new file mode 100644 index 000000000..ab5e686aa --- /dev/null +++ b/src/api/pfdcm/generated/models/ModelsPacsSetupModelTime.ts @@ -0,0 +1,61 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * A simple model that has a time string field + * @export + * @interface ModelsPacsSetupModelTime + */ +export interface ModelsPacsSetupModelTime { + /** + * + * @type {string} + * @memberof ModelsPacsSetupModelTime + */ + time: string; +} + +/** + * Check if a given object implements the ModelsPacsSetupModelTime interface. + */ +export function instanceOfModelsPacsSetupModelTime(value: object): value is ModelsPacsSetupModelTime { + if (!('time' in value) || value['time'] === undefined) return false; + return true; +} + +export function ModelsPacsSetupModelTimeFromJSON(json: any): ModelsPacsSetupModelTime { + return ModelsPacsSetupModelTimeFromJSONTyped(json, false); +} + +export function ModelsPacsSetupModelTimeFromJSONTyped(json: any, ignoreDiscriminator: boolean): ModelsPacsSetupModelTime { + if (json == null) { + return json; + } + return { + + 'time': json['time'], + }; +} + +export function ModelsPacsSetupModelTimeToJSON(value?: ModelsPacsSetupModelTime | null): any { + if (value == null) { + return value; + } + return { + + 'time': value['time'], + }; +} + diff --git a/src/api/pfdcm/generated/models/ModelsPacsSetupModelValueStr.ts b/src/api/pfdcm/generated/models/ModelsPacsSetupModelValueStr.ts new file mode 100644 index 000000000..ba3f1ff20 --- /dev/null +++ b/src/api/pfdcm/generated/models/ModelsPacsSetupModelValueStr.ts @@ -0,0 +1,60 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * + * @export + * @interface ModelsPacsSetupModelValueStr + */ +export interface ModelsPacsSetupModelValueStr { + /** + * + * @type {string} + * @memberof ModelsPacsSetupModelValueStr + */ + value?: string; +} + +/** + * Check if a given object implements the ModelsPacsSetupModelValueStr interface. + */ +export function instanceOfModelsPacsSetupModelValueStr(value: object): value is ModelsPacsSetupModelValueStr { + return true; +} + +export function ModelsPacsSetupModelValueStrFromJSON(json: any): ModelsPacsSetupModelValueStr { + return ModelsPacsSetupModelValueStrFromJSONTyped(json, false); +} + +export function ModelsPacsSetupModelValueStrFromJSONTyped(json: any, ignoreDiscriminator: boolean): ModelsPacsSetupModelValueStr { + if (json == null) { + return json; + } + return { + + 'value': json['value'] == null ? undefined : json['value'], + }; +} + +export function ModelsPacsSetupModelValueStrToJSON(value?: ModelsPacsSetupModelValueStr | null): any { + if (value == null) { + return value; + } + return { + + 'value': value['value'], + }; +} + diff --git a/src/api/pfdcm/generated/models/ModelsSmdbSetupModelValueStr.ts b/src/api/pfdcm/generated/models/ModelsSmdbSetupModelValueStr.ts new file mode 100644 index 000000000..169f10f83 --- /dev/null +++ b/src/api/pfdcm/generated/models/ModelsSmdbSetupModelValueStr.ts @@ -0,0 +1,60 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * + * @export + * @interface ModelsSmdbSetupModelValueStr + */ +export interface ModelsSmdbSetupModelValueStr { + /** + * + * @type {string} + * @memberof ModelsSmdbSetupModelValueStr + */ + value?: string; +} + +/** + * Check if a given object implements the ModelsSmdbSetupModelValueStr interface. + */ +export function instanceOfModelsSmdbSetupModelValueStr(value: object): value is ModelsSmdbSetupModelValueStr { + return true; +} + +export function ModelsSmdbSetupModelValueStrFromJSON(json: any): ModelsSmdbSetupModelValueStr { + return ModelsSmdbSetupModelValueStrFromJSONTyped(json, false); +} + +export function ModelsSmdbSetupModelValueStrFromJSONTyped(json: any, ignoreDiscriminator: boolean): ModelsSmdbSetupModelValueStr { + if (json == null) { + return json; + } + return { + + 'value': json['value'] == null ? undefined : json['value'], + }; +} + +export function ModelsSmdbSetupModelValueStrToJSON(value?: ModelsSmdbSetupModelValueStr | null): any { + if (value == null) { + return value; + } + return { + + 'value': value['value'], + }; +} + diff --git a/src/api/pfdcm/generated/models/PACSasync.ts b/src/api/pfdcm/generated/models/PACSasync.ts new file mode 100644 index 000000000..ba5a89467 --- /dev/null +++ b/src/api/pfdcm/generated/models/PACSasync.ts @@ -0,0 +1,87 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * A model returned when an async PACS directive is indicated + * @export + * @interface PACSasync + */ +export interface PACSasync { + /** + * + * @type {string} + * @memberof PACSasync + */ + directiveType?: string; + /** + * + * @type {object} + * @memberof PACSasync + */ + response: object; + /** + * + * @type {string} + * @memberof PACSasync + */ + timestamp: string; + /** + * + * @type {object} + * @memberof PACSasync + */ + pACSdirective: object; +} + +/** + * Check if a given object implements the PACSasync interface. + */ +export function instanceOfPACSasync(value: object): value is PACSasync { + if (!('response' in value) || value['response'] === undefined) return false; + if (!('timestamp' in value) || value['timestamp'] === undefined) return false; + if (!('pACSdirective' in value) || value['pACSdirective'] === undefined) return false; + return true; +} + +export function PACSasyncFromJSON(json: any): PACSasync { + return PACSasyncFromJSONTyped(json, false); +} + +export function PACSasyncFromJSONTyped(json: any, ignoreDiscriminator: boolean): PACSasync { + if (json == null) { + return json; + } + return { + + 'directiveType': json['directiveType'] == null ? undefined : json['directiveType'], + 'response': json['response'], + 'timestamp': json['timestamp'], + 'pACSdirective': json['PACSdirective'], + }; +} + +export function PACSasyncToJSON(value?: PACSasync | null): any { + if (value == null) { + return value; + } + return { + + 'directiveType': value['directiveType'], + 'response': value['response'], + 'timestamp': value['timestamp'], + 'PACSdirective': value['pACSdirective'], + }; +} + diff --git a/src/api/pfdcm/generated/models/PACSdbPutModel.ts b/src/api/pfdcm/generated/models/PACSdbPutModel.ts new file mode 100644 index 000000000..27b7d39d0 --- /dev/null +++ b/src/api/pfdcm/generated/models/PACSdbPutModel.ts @@ -0,0 +1,68 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { PACSsetupCore } from './PACSsetupCore'; +import { + PACSsetupCoreFromJSON, + PACSsetupCoreFromJSONTyped, + PACSsetupCoreToJSON, +} from './PACSsetupCore'; + +/** + * Model that illustrates what to PUT to the DB + * @export + * @interface PACSdbPutModel + */ +export interface PACSdbPutModel { + /** + * + * @type {PACSsetupCore} + * @memberof PACSdbPutModel + */ + info: PACSsetupCore; +} + +/** + * Check if a given object implements the PACSdbPutModel interface. + */ +export function instanceOfPACSdbPutModel(value: object): value is PACSdbPutModel { + if (!('info' in value) || value['info'] === undefined) return false; + return true; +} + +export function PACSdbPutModelFromJSON(json: any): PACSdbPutModel { + return PACSdbPutModelFromJSONTyped(json, false); +} + +export function PACSdbPutModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): PACSdbPutModel { + if (json == null) { + return json; + } + return { + + 'info': PACSsetupCoreFromJSON(json['info']), + }; +} + +export function PACSdbPutModelToJSON(value?: PACSdbPutModel | null): any { + if (value == null) { + return value; + } + return { + + 'info': PACSsetupCoreToJSON(value['info']), + }; +} + diff --git a/src/api/pfdcm/generated/models/PACSdbReturnModel.ts b/src/api/pfdcm/generated/models/PACSdbReturnModel.ts new file mode 100644 index 000000000..3e3b9de65 --- /dev/null +++ b/src/api/pfdcm/generated/models/PACSdbReturnModel.ts @@ -0,0 +1,101 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { ModelsPacsSetupModelTime } from './ModelsPacsSetupModelTime'; +import { + ModelsPacsSetupModelTimeFromJSON, + ModelsPacsSetupModelTimeFromJSONTyped, + ModelsPacsSetupModelTimeToJSON, +} from './ModelsPacsSetupModelTime'; +import type { PACSsetupCore } from './PACSsetupCore'; +import { + PACSsetupCoreFromJSON, + PACSsetupCoreFromJSONTyped, + PACSsetupCoreToJSON, +} from './PACSsetupCore'; + +/** + * A full model that is returned from a call to the DB + * @export + * @interface PACSdbReturnModel + */ +export interface PACSdbReturnModel { + /** + * + * @type {PACSsetupCore} + * @memberof PACSdbReturnModel + */ + info: PACSsetupCore; + /** + * + * @type {ModelsPacsSetupModelTime} + * @memberof PACSdbReturnModel + */ + timeCreated: ModelsPacsSetupModelTime; + /** + * + * @type {ModelsPacsSetupModelTime} + * @memberof PACSdbReturnModel + */ + timeModified: ModelsPacsSetupModelTime; + /** + * + * @type {string} + * @memberof PACSdbReturnModel + */ + message: string; +} + +/** + * Check if a given object implements the PACSdbReturnModel interface. + */ +export function instanceOfPACSdbReturnModel(value: object): value is PACSdbReturnModel { + if (!('info' in value) || value['info'] === undefined) return false; + if (!('timeCreated' in value) || value['timeCreated'] === undefined) return false; + if (!('timeModified' in value) || value['timeModified'] === undefined) return false; + if (!('message' in value) || value['message'] === undefined) return false; + return true; +} + +export function PACSdbReturnModelFromJSON(json: any): PACSdbReturnModel { + return PACSdbReturnModelFromJSONTyped(json, false); +} + +export function PACSdbReturnModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): PACSdbReturnModel { + if (json == null) { + return json; + } + return { + + 'info': PACSsetupCoreFromJSON(json['info']), + 'timeCreated': ModelsPacsSetupModelTimeFromJSON(json['time_created']), + 'timeModified': ModelsPacsSetupModelTimeFromJSON(json['time_modified']), + 'message': json['message'], + }; +} + +export function PACSdbReturnModelToJSON(value?: PACSdbReturnModel | null): any { + if (value == null) { + return value; + } + return { + + 'info': PACSsetupCoreToJSON(value['info']), + 'time_created': ModelsPacsSetupModelTimeToJSON(value['timeCreated']), + 'time_modified': ModelsPacsSetupModelTimeToJSON(value['timeModified']), + 'message': value['message'], + }; +} + diff --git a/src/api/pfdcm/generated/models/PACSqueryCore.ts b/src/api/pfdcm/generated/models/PACSqueryCore.ts new file mode 100644 index 000000000..aa894839f --- /dev/null +++ b/src/api/pfdcm/generated/models/PACSqueryCore.ts @@ -0,0 +1,252 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * The PACS Query model + * @export + * @interface PACSqueryCore + */ +export interface PACSqueryCore { + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + accessionNumber?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + patientID?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + patientName?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + patientBirthDate?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + patientAge?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + patientSex?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + studyDate?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + studyDescription?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + studyInstanceUID?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + modality?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + modalitiesInStudy?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + performedStationAETitle?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + numberOfSeriesRelatedInstances?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + instanceNumber?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + seriesDate?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + seriesDescription?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + seriesInstanceUID?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + protocolName?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + acquisitionProtocolDescription?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + acquisitionProtocolName?: string; + /** + * + * @type {boolean} + * @memberof PACSqueryCore + */ + withFeedBack?: boolean; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + then?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + thenArgs?: string; + /** + * + * @type {string} + * @memberof PACSqueryCore + */ + dblogbasepath?: string; + /** + * + * @type {boolean} + * @memberof PACSqueryCore + */ + jsonResponse?: boolean; +} + +/** + * Check if a given object implements the PACSqueryCore interface. + */ +export function instanceOfPACSqueryCore(value: object): value is PACSqueryCore { + return true; +} + +export function PACSqueryCoreFromJSON(json: any): PACSqueryCore { + return PACSqueryCoreFromJSONTyped(json, false); +} + +export function PACSqueryCoreFromJSONTyped(json: any, ignoreDiscriminator: boolean): PACSqueryCore { + if (json == null) { + return json; + } + return { + + 'accessionNumber': json['AccessionNumber'] == null ? undefined : json['AccessionNumber'], + 'patientID': json['PatientID'] == null ? undefined : json['PatientID'], + 'patientName': json['PatientName'] == null ? undefined : json['PatientName'], + 'patientBirthDate': json['PatientBirthDate'] == null ? undefined : json['PatientBirthDate'], + 'patientAge': json['PatientAge'] == null ? undefined : json['PatientAge'], + 'patientSex': json['PatientSex'] == null ? undefined : json['PatientSex'], + 'studyDate': json['StudyDate'] == null ? undefined : json['StudyDate'], + 'studyDescription': json['StudyDescription'] == null ? undefined : json['StudyDescription'], + 'studyInstanceUID': json['StudyInstanceUID'] == null ? undefined : json['StudyInstanceUID'], + 'modality': json['Modality'] == null ? undefined : json['Modality'], + 'modalitiesInStudy': json['ModalitiesInStudy'] == null ? undefined : json['ModalitiesInStudy'], + 'performedStationAETitle': json['PerformedStationAETitle'] == null ? undefined : json['PerformedStationAETitle'], + 'numberOfSeriesRelatedInstances': json['NumberOfSeriesRelatedInstances'] == null ? undefined : json['NumberOfSeriesRelatedInstances'], + 'instanceNumber': json['InstanceNumber'] == null ? undefined : json['InstanceNumber'], + 'seriesDate': json['SeriesDate'] == null ? undefined : json['SeriesDate'], + 'seriesDescription': json['SeriesDescription'] == null ? undefined : json['SeriesDescription'], + 'seriesInstanceUID': json['SeriesInstanceUID'] == null ? undefined : json['SeriesInstanceUID'], + 'protocolName': json['ProtocolName'] == null ? undefined : json['ProtocolName'], + 'acquisitionProtocolDescription': json['AcquisitionProtocolDescription'] == null ? undefined : json['AcquisitionProtocolDescription'], + 'acquisitionProtocolName': json['AcquisitionProtocolName'] == null ? undefined : json['AcquisitionProtocolName'], + 'withFeedBack': json['withFeedBack'] == null ? undefined : json['withFeedBack'], + 'then': json['then'] == null ? undefined : json['then'], + 'thenArgs': json['thenArgs'] == null ? undefined : json['thenArgs'], + 'dblogbasepath': json['dblogbasepath'] == null ? undefined : json['dblogbasepath'], + 'jsonResponse': json['json_response'] == null ? undefined : json['json_response'], + }; +} + +export function PACSqueryCoreToJSON(value?: PACSqueryCore | null): any { + if (value == null) { + return value; + } + return { + + 'AccessionNumber': value['accessionNumber'], + 'PatientID': value['patientID'], + 'PatientName': value['patientName'], + 'PatientBirthDate': value['patientBirthDate'], + 'PatientAge': value['patientAge'], + 'PatientSex': value['patientSex'], + 'StudyDate': value['studyDate'], + 'StudyDescription': value['studyDescription'], + 'StudyInstanceUID': value['studyInstanceUID'], + 'Modality': value['modality'], + 'ModalitiesInStudy': value['modalitiesInStudy'], + 'PerformedStationAETitle': value['performedStationAETitle'], + 'NumberOfSeriesRelatedInstances': value['numberOfSeriesRelatedInstances'], + 'InstanceNumber': value['instanceNumber'], + 'SeriesDate': value['seriesDate'], + 'SeriesDescription': value['seriesDescription'], + 'SeriesInstanceUID': value['seriesInstanceUID'], + 'ProtocolName': value['protocolName'], + 'AcquisitionProtocolDescription': value['acquisitionProtocolDescription'], + 'AcquisitionProtocolName': value['acquisitionProtocolName'], + 'withFeedBack': value['withFeedBack'], + 'then': value['then'], + 'thenArgs': value['thenArgs'], + 'dblogbasepath': value['dblogbasepath'], + 'json_response': value['jsonResponse'], + }; +} + diff --git a/src/api/pfdcm/generated/models/PACSsetupCore.ts b/src/api/pfdcm/generated/models/PACSsetupCore.ts new file mode 100644 index 000000000..60f529b21 --- /dev/null +++ b/src/api/pfdcm/generated/models/PACSsetupCore.ts @@ -0,0 +1,92 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * The PACS service model + * @export + * @interface PACSsetupCore + */ +export interface PACSsetupCore { + /** + * + * @type {string} + * @memberof PACSsetupCore + */ + aet?: string; + /** + * + * @type {string} + * @memberof PACSsetupCore + */ + aetListener?: string; + /** + * + * @type {string} + * @memberof PACSsetupCore + */ + aec?: string; + /** + * + * @type {string} + * @memberof PACSsetupCore + */ + serverIP?: string; + /** + * + * @type {string} + * @memberof PACSsetupCore + */ + serverPort?: string; +} + +/** + * Check if a given object implements the PACSsetupCore interface. + */ +export function instanceOfPACSsetupCore(value: object): value is PACSsetupCore { + return true; +} + +export function PACSsetupCoreFromJSON(json: any): PACSsetupCore { + return PACSsetupCoreFromJSONTyped(json, false); +} + +export function PACSsetupCoreFromJSONTyped(json: any, ignoreDiscriminator: boolean): PACSsetupCore { + if (json == null) { + return json; + } + return { + + 'aet': json['aet'] == null ? undefined : json['aet'], + 'aetListener': json['aet_listener'] == null ? undefined : json['aet_listener'], + 'aec': json['aec'] == null ? undefined : json['aec'], + 'serverIP': json['serverIP'] == null ? undefined : json['serverIP'], + 'serverPort': json['serverPort'] == null ? undefined : json['serverPort'], + }; +} + +export function PACSsetupCoreToJSON(value?: PACSsetupCore | null): any { + if (value == null) { + return value; + } + return { + + 'aet': value['aet'], + 'aet_listener': value['aetListener'], + 'aec': value['aec'], + 'serverIP': value['serverIP'], + 'serverPort': value['serverPort'], + }; +} + diff --git a/src/api/pfdcm/generated/models/SMDBFsConfig.ts b/src/api/pfdcm/generated/models/SMDBFsConfig.ts new file mode 100644 index 000000000..fe2f0aab1 --- /dev/null +++ b/src/api/pfdcm/generated/models/SMDBFsConfig.ts @@ -0,0 +1,83 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { ModelsSmdbSetupModelValueStr } from './ModelsSmdbSetupModelValueStr'; +import { + ModelsSmdbSetupModelValueStrFromJSON, + ModelsSmdbSetupModelValueStrFromJSONTyped, + ModelsSmdbSetupModelValueStrToJSON, +} from './ModelsSmdbSetupModelValueStr'; +import type { SMDBFsCore } from './SMDBFsCore'; +import { + SMDBFsCoreFromJSON, + SMDBFsCoreFromJSONTyped, + SMDBFsCoreToJSON, +} from './SMDBFsCore'; + +/** + * The SMDB FS key config model + * @export + * @interface SMDBFsConfig + */ +export interface SMDBFsConfig { + /** + * + * @type {ModelsSmdbSetupModelValueStr} + * @memberof SMDBFsConfig + */ + fsKeyName: ModelsSmdbSetupModelValueStr; + /** + * + * @type {SMDBFsCore} + * @memberof SMDBFsConfig + */ + fsInfo: SMDBFsCore; +} + +/** + * Check if a given object implements the SMDBFsConfig interface. + */ +export function instanceOfSMDBFsConfig(value: object): value is SMDBFsConfig { + if (!('fsKeyName' in value) || value['fsKeyName'] === undefined) return false; + if (!('fsInfo' in value) || value['fsInfo'] === undefined) return false; + return true; +} + +export function SMDBFsConfigFromJSON(json: any): SMDBFsConfig { + return SMDBFsConfigFromJSONTyped(json, false); +} + +export function SMDBFsConfigFromJSONTyped(json: any, ignoreDiscriminator: boolean): SMDBFsConfig { + if (json == null) { + return json; + } + return { + + 'fsKeyName': ModelsSmdbSetupModelValueStrFromJSON(json['fsKeyName']), + 'fsInfo': SMDBFsCoreFromJSON(json['fsInfo']), + }; +} + +export function SMDBFsConfigToJSON(value?: SMDBFsConfig | null): any { + if (value == null) { + return value; + } + return { + + 'fsKeyName': ModelsSmdbSetupModelValueStrToJSON(value['fsKeyName']), + 'fsInfo': SMDBFsCoreToJSON(value['fsInfo']), + }; +} + diff --git a/src/api/pfdcm/generated/models/SMDBFsCore.ts b/src/api/pfdcm/generated/models/SMDBFsCore.ts new file mode 100644 index 000000000..485db73db --- /dev/null +++ b/src/api/pfdcm/generated/models/SMDBFsCore.ts @@ -0,0 +1,61 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * The SMDB file system service model + * @export + * @interface SMDBFsCore + */ +export interface SMDBFsCore { + /** + * + * @type {string} + * @memberof SMDBFsCore + */ + storepath: string; +} + +/** + * Check if a given object implements the SMDBFsCore interface. + */ +export function instanceOfSMDBFsCore(value: object): value is SMDBFsCore { + if (!('storepath' in value) || value['storepath'] === undefined) return false; + return true; +} + +export function SMDBFsCoreFromJSON(json: any): SMDBFsCore { + return SMDBFsCoreFromJSONTyped(json, false); +} + +export function SMDBFsCoreFromJSONTyped(json: any, ignoreDiscriminator: boolean): SMDBFsCore { + if (json == null) { + return json; + } + return { + + 'storepath': json['storepath'], + }; +} + +export function SMDBFsCoreToJSON(value?: SMDBFsCore | null): any { + if (value == null) { + return value; + } + return { + + 'storepath': value['storepath'], + }; +} + diff --git a/src/api/pfdcm/generated/models/SMDBFsReturnModel.ts b/src/api/pfdcm/generated/models/SMDBFsReturnModel.ts new file mode 100644 index 000000000..4e248dca8 --- /dev/null +++ b/src/api/pfdcm/generated/models/SMDBFsReturnModel.ts @@ -0,0 +1,85 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { SMDBFsCore } from './SMDBFsCore'; +import { + SMDBFsCoreFromJSON, + SMDBFsCoreFromJSONTyped, + SMDBFsCoreToJSON, +} from './SMDBFsCore'; + +/** + * A full model that is returned from a call to the DB + * @export + * @interface SMDBFsReturnModel + */ +export interface SMDBFsReturnModel { + /** + * + * @type {boolean} + * @memberof SMDBFsReturnModel + */ + status?: boolean; + /** + * + * @type {string} + * @memberof SMDBFsReturnModel + */ + fsKeyName: string; + /** + * + * @type {SMDBFsCore} + * @memberof SMDBFsReturnModel + */ + fsInfo: SMDBFsCore; +} + +/** + * Check if a given object implements the SMDBFsReturnModel interface. + */ +export function instanceOfSMDBFsReturnModel(value: object): value is SMDBFsReturnModel { + if (!('fsKeyName' in value) || value['fsKeyName'] === undefined) return false; + if (!('fsInfo' in value) || value['fsInfo'] === undefined) return false; + return true; +} + +export function SMDBFsReturnModelFromJSON(json: any): SMDBFsReturnModel { + return SMDBFsReturnModelFromJSONTyped(json, false); +} + +export function SMDBFsReturnModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): SMDBFsReturnModel { + if (json == null) { + return json; + } + return { + + 'status': json['status'] == null ? undefined : json['status'], + 'fsKeyName': json['fsKeyName'], + 'fsInfo': SMDBFsCoreFromJSON(json['fsInfo']), + }; +} + +export function SMDBFsReturnModelToJSON(value?: SMDBFsReturnModel | null): any { + if (value == null) { + return value; + } + return { + + 'status': value['status'], + 'fsKeyName': value['fsKeyName'], + 'fsInfo': SMDBFsCoreToJSON(value['fsInfo']), + }; +} + diff --git a/src/api/pfdcm/generated/models/SMDBcubeConfig.ts b/src/api/pfdcm/generated/models/SMDBcubeConfig.ts new file mode 100644 index 000000000..5668d959a --- /dev/null +++ b/src/api/pfdcm/generated/models/SMDBcubeConfig.ts @@ -0,0 +1,83 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { ModelsSmdbSetupModelValueStr } from './ModelsSmdbSetupModelValueStr'; +import { + ModelsSmdbSetupModelValueStrFromJSON, + ModelsSmdbSetupModelValueStrFromJSONTyped, + ModelsSmdbSetupModelValueStrToJSON, +} from './ModelsSmdbSetupModelValueStr'; +import type { SMDBcubeCore } from './SMDBcubeCore'; +import { + SMDBcubeCoreFromJSON, + SMDBcubeCoreFromJSONTyped, + SMDBcubeCoreToJSON, +} from './SMDBcubeCore'; + +/** + * The SMDB cube key config model + * @export + * @interface SMDBcubeConfig + */ +export interface SMDBcubeConfig { + /** + * + * @type {ModelsSmdbSetupModelValueStr} + * @memberof SMDBcubeConfig + */ + cubeKeyName: ModelsSmdbSetupModelValueStr; + /** + * + * @type {SMDBcubeCore} + * @memberof SMDBcubeConfig + */ + cubeInfo: SMDBcubeCore; +} + +/** + * Check if a given object implements the SMDBcubeConfig interface. + */ +export function instanceOfSMDBcubeConfig(value: object): value is SMDBcubeConfig { + if (!('cubeKeyName' in value) || value['cubeKeyName'] === undefined) return false; + if (!('cubeInfo' in value) || value['cubeInfo'] === undefined) return false; + return true; +} + +export function SMDBcubeConfigFromJSON(json: any): SMDBcubeConfig { + return SMDBcubeConfigFromJSONTyped(json, false); +} + +export function SMDBcubeConfigFromJSONTyped(json: any, ignoreDiscriminator: boolean): SMDBcubeConfig { + if (json == null) { + return json; + } + return { + + 'cubeKeyName': ModelsSmdbSetupModelValueStrFromJSON(json['cubeKeyName']), + 'cubeInfo': SMDBcubeCoreFromJSON(json['cubeInfo']), + }; +} + +export function SMDBcubeConfigToJSON(value?: SMDBcubeConfig | null): any { + if (value == null) { + return value; + } + return { + + 'cubeKeyName': ModelsSmdbSetupModelValueStrToJSON(value['cubeKeyName']), + 'cubeInfo': SMDBcubeCoreToJSON(value['cubeInfo']), + }; +} + diff --git a/src/api/pfdcm/generated/models/SMDBcubeCore.ts b/src/api/pfdcm/generated/models/SMDBcubeCore.ts new file mode 100644 index 000000000..845ebd857 --- /dev/null +++ b/src/api/pfdcm/generated/models/SMDBcubeCore.ts @@ -0,0 +1,79 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * The SMDB cube service model + * @export + * @interface SMDBcubeCore + */ +export interface SMDBcubeCore { + /** + * + * @type {string} + * @memberof SMDBcubeCore + */ + url: string; + /** + * + * @type {string} + * @memberof SMDBcubeCore + */ + username: string; + /** + * + * @type {string} + * @memberof SMDBcubeCore + */ + password: string; +} + +/** + * Check if a given object implements the SMDBcubeCore interface. + */ +export function instanceOfSMDBcubeCore(value: object): value is SMDBcubeCore { + if (!('url' in value) || value['url'] === undefined) return false; + if (!('username' in value) || value['username'] === undefined) return false; + if (!('password' in value) || value['password'] === undefined) return false; + return true; +} + +export function SMDBcubeCoreFromJSON(json: any): SMDBcubeCore { + return SMDBcubeCoreFromJSONTyped(json, false); +} + +export function SMDBcubeCoreFromJSONTyped(json: any, ignoreDiscriminator: boolean): SMDBcubeCore { + if (json == null) { + return json; + } + return { + + 'url': json['url'], + 'username': json['username'], + 'password': json['password'], + }; +} + +export function SMDBcubeCoreToJSON(value?: SMDBcubeCore | null): any { + if (value == null) { + return value; + } + return { + + 'url': value['url'], + 'username': value['username'], + 'password': value['password'], + }; +} + diff --git a/src/api/pfdcm/generated/models/SMDBcubeReturnModel.ts b/src/api/pfdcm/generated/models/SMDBcubeReturnModel.ts new file mode 100644 index 000000000..a09dc5543 --- /dev/null +++ b/src/api/pfdcm/generated/models/SMDBcubeReturnModel.ts @@ -0,0 +1,85 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { SMDBcubeCore } from './SMDBcubeCore'; +import { + SMDBcubeCoreFromJSON, + SMDBcubeCoreFromJSONTyped, + SMDBcubeCoreToJSON, +} from './SMDBcubeCore'; + +/** + * A full model that is returned from a call to the DB + * @export + * @interface SMDBcubeReturnModel + */ +export interface SMDBcubeReturnModel { + /** + * + * @type {boolean} + * @memberof SMDBcubeReturnModel + */ + status?: boolean; + /** + * + * @type {string} + * @memberof SMDBcubeReturnModel + */ + cubeKeyName: string; + /** + * + * @type {SMDBcubeCore} + * @memberof SMDBcubeReturnModel + */ + cubeInfo: SMDBcubeCore; +} + +/** + * Check if a given object implements the SMDBcubeReturnModel interface. + */ +export function instanceOfSMDBcubeReturnModel(value: object): value is SMDBcubeReturnModel { + if (!('cubeKeyName' in value) || value['cubeKeyName'] === undefined) return false; + if (!('cubeInfo' in value) || value['cubeInfo'] === undefined) return false; + return true; +} + +export function SMDBcubeReturnModelFromJSON(json: any): SMDBcubeReturnModel { + return SMDBcubeReturnModelFromJSONTyped(json, false); +} + +export function SMDBcubeReturnModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): SMDBcubeReturnModel { + if (json == null) { + return json; + } + return { + + 'status': json['status'] == null ? undefined : json['status'], + 'cubeKeyName': json['cubeKeyName'], + 'cubeInfo': SMDBcubeCoreFromJSON(json['cubeInfo']), + }; +} + +export function SMDBcubeReturnModelToJSON(value?: SMDBcubeReturnModel | null): any { + if (value == null) { + return value; + } + return { + + 'status': value['status'], + 'cubeKeyName': value['cubeKeyName'], + 'cubeInfo': SMDBcubeCoreToJSON(value['cubeInfo']), + }; +} + diff --git a/src/api/pfdcm/generated/models/SMDBswiftConfig.ts b/src/api/pfdcm/generated/models/SMDBswiftConfig.ts new file mode 100644 index 000000000..59ee1a641 --- /dev/null +++ b/src/api/pfdcm/generated/models/SMDBswiftConfig.ts @@ -0,0 +1,83 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { ModelsSmdbSetupModelValueStr } from './ModelsSmdbSetupModelValueStr'; +import { + ModelsSmdbSetupModelValueStrFromJSON, + ModelsSmdbSetupModelValueStrFromJSONTyped, + ModelsSmdbSetupModelValueStrToJSON, +} from './ModelsSmdbSetupModelValueStr'; +import type { SMDBswiftCore } from './SMDBswiftCore'; +import { + SMDBswiftCoreFromJSON, + SMDBswiftCoreFromJSONTyped, + SMDBswiftCoreToJSON, +} from './SMDBswiftCore'; + +/** + * The SMDB swift key config model + * @export + * @interface SMDBswiftConfig + */ +export interface SMDBswiftConfig { + /** + * + * @type {ModelsSmdbSetupModelValueStr} + * @memberof SMDBswiftConfig + */ + swiftKeyName: ModelsSmdbSetupModelValueStr; + /** + * + * @type {SMDBswiftCore} + * @memberof SMDBswiftConfig + */ + swiftInfo: SMDBswiftCore; +} + +/** + * Check if a given object implements the SMDBswiftConfig interface. + */ +export function instanceOfSMDBswiftConfig(value: object): value is SMDBswiftConfig { + if (!('swiftKeyName' in value) || value['swiftKeyName'] === undefined) return false; + if (!('swiftInfo' in value) || value['swiftInfo'] === undefined) return false; + return true; +} + +export function SMDBswiftConfigFromJSON(json: any): SMDBswiftConfig { + return SMDBswiftConfigFromJSONTyped(json, false); +} + +export function SMDBswiftConfigFromJSONTyped(json: any, ignoreDiscriminator: boolean): SMDBswiftConfig { + if (json == null) { + return json; + } + return { + + 'swiftKeyName': ModelsSmdbSetupModelValueStrFromJSON(json['swiftKeyName']), + 'swiftInfo': SMDBswiftCoreFromJSON(json['swiftInfo']), + }; +} + +export function SMDBswiftConfigToJSON(value?: SMDBswiftConfig | null): any { + if (value == null) { + return value; + } + return { + + 'swiftKeyName': ModelsSmdbSetupModelValueStrToJSON(value['swiftKeyName']), + 'swiftInfo': SMDBswiftCoreToJSON(value['swiftInfo']), + }; +} + diff --git a/src/api/pfdcm/generated/models/SMDBswiftCore.ts b/src/api/pfdcm/generated/models/SMDBswiftCore.ts new file mode 100644 index 000000000..cd8dca4ae --- /dev/null +++ b/src/api/pfdcm/generated/models/SMDBswiftCore.ts @@ -0,0 +1,79 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * The SMDB swift service model + * @export + * @interface SMDBswiftCore + */ +export interface SMDBswiftCore { + /** + * + * @type {string} + * @memberof SMDBswiftCore + */ + ip: string; + /** + * + * @type {string} + * @memberof SMDBswiftCore + */ + port: string; + /** + * + * @type {string} + * @memberof SMDBswiftCore + */ + login: string; +} + +/** + * Check if a given object implements the SMDBswiftCore interface. + */ +export function instanceOfSMDBswiftCore(value: object): value is SMDBswiftCore { + if (!('ip' in value) || value['ip'] === undefined) return false; + if (!('port' in value) || value['port'] === undefined) return false; + if (!('login' in value) || value['login'] === undefined) return false; + return true; +} + +export function SMDBswiftCoreFromJSON(json: any): SMDBswiftCore { + return SMDBswiftCoreFromJSONTyped(json, false); +} + +export function SMDBswiftCoreFromJSONTyped(json: any, ignoreDiscriminator: boolean): SMDBswiftCore { + if (json == null) { + return json; + } + return { + + 'ip': json['ip'], + 'port': json['port'], + 'login': json['login'], + }; +} + +export function SMDBswiftCoreToJSON(value?: SMDBswiftCore | null): any { + if (value == null) { + return value; + } + return { + + 'ip': value['ip'], + 'port': value['port'], + 'login': value['login'], + }; +} + diff --git a/src/api/pfdcm/generated/models/SysInfoModel.ts b/src/api/pfdcm/generated/models/SysInfoModel.ts new file mode 100644 index 000000000..0411adf6b --- /dev/null +++ b/src/api/pfdcm/generated/models/SysInfoModel.ts @@ -0,0 +1,148 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * For the most part, copied from + * https://github.com/FNNDSC/pfcon/blob/87f5da953be7c2cc80542bef0e67727dda1b4958/pfcon/pfcon.py#L601-611 + * + * Provides information about the environment in which the service + * is currently running. + * @export + * @interface SysInfoModel + */ +export interface SysInfoModel { + /** + * + * @type {string} + * @memberof SysInfoModel + */ + system?: string; + /** + * + * @type {string} + * @memberof SysInfoModel + */ + machine?: string; + /** + * Uname output, converted from object to list + * @type {Array<string>} + * @memberof SysInfoModel + */ + uname?: Array<string>; + /** + * + * @type {string} + * @memberof SysInfoModel + */ + platform?: string; + /** + * + * @type {string} + * @memberof SysInfoModel + */ + version: string; + /** + * Actually a NamedTuple but I'm not typing it out + * @type {Array<any>} + * @memberof SysInfoModel + */ + memory: Array<any>; + /** + * + * @type {number} + * @memberof SysInfoModel + */ + cpucount?: number; + /** + * Average system load over last 1, 5, and 15 minutes + * @type {Array<any>} + * @memberof SysInfoModel + */ + loadavg: Array<any>; + /** + * + * @type {number} + * @memberof SysInfoModel + */ + cpuPercent: number; + /** + * + * @type {string} + * @memberof SysInfoModel + */ + hostname?: string; + /** + * + * @type {string} + * @memberof SysInfoModel + */ + inet?: string; +} + +/** + * Check if a given object implements the SysInfoModel interface. + */ +export function instanceOfSysInfoModel(value: object): value is SysInfoModel { + if (!('version' in value) || value['version'] === undefined) return false; + if (!('memory' in value) || value['memory'] === undefined) return false; + if (!('loadavg' in value) || value['loadavg'] === undefined) return false; + if (!('cpuPercent' in value) || value['cpuPercent'] === undefined) return false; + return true; +} + +export function SysInfoModelFromJSON(json: any): SysInfoModel { + return SysInfoModelFromJSONTyped(json, false); +} + +export function SysInfoModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): SysInfoModel { + if (json == null) { + return json; + } + return { + + 'system': json['system'] == null ? undefined : json['system'], + 'machine': json['machine'] == null ? undefined : json['machine'], + 'uname': json['uname'] == null ? undefined : json['uname'], + 'platform': json['platform'] == null ? undefined : json['platform'], + 'version': json['version'], + 'memory': json['memory'], + 'cpucount': json['cpucount'] == null ? undefined : json['cpucount'], + 'loadavg': json['loadavg'], + 'cpuPercent': json['cpu_percent'], + 'hostname': json['hostname'] == null ? undefined : json['hostname'], + 'inet': json['inet'] == null ? undefined : json['inet'], + }; +} + +export function SysInfoModelToJSON(value?: SysInfoModel | null): any { + if (value == null) { + return value; + } + return { + + 'system': value['system'], + 'machine': value['machine'], + 'uname': value['uname'], + 'platform': value['platform'], + 'version': value['version'], + 'memory': value['memory'], + 'cpucount': value['cpucount'], + 'loadavg': value['loadavg'], + 'cpu_percent': value['cpuPercent'], + 'hostname': value['hostname'], + 'inet': value['inet'], + }; +} + diff --git a/src/api/pfdcm/generated/models/ValidationError.ts b/src/api/pfdcm/generated/models/ValidationError.ts new file mode 100644 index 000000000..2355a36ea --- /dev/null +++ b/src/api/pfdcm/generated/models/ValidationError.ts @@ -0,0 +1,86 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { LocationInner } from './LocationInner'; +import { + LocationInnerFromJSON, + LocationInnerFromJSONTyped, + LocationInnerToJSON, +} from './LocationInner'; + +/** + * + * @export + * @interface ValidationError + */ +export interface ValidationError { + /** + * + * @type {Array<LocationInner>} + * @memberof ValidationError + */ + loc: Array<LocationInner>; + /** + * + * @type {string} + * @memberof ValidationError + */ + msg: string; + /** + * + * @type {string} + * @memberof ValidationError + */ + type: string; +} + +/** + * Check if a given object implements the ValidationError interface. + */ +export function instanceOfValidationError(value: object): value is ValidationError { + if (!('loc' in value) || value['loc'] === undefined) return false; + if (!('msg' in value) || value['msg'] === undefined) return false; + if (!('type' in value) || value['type'] === undefined) return false; + return true; +} + +export function ValidationErrorFromJSON(json: any): ValidationError { + return ValidationErrorFromJSONTyped(json, false); +} + +export function ValidationErrorFromJSONTyped(json: any, ignoreDiscriminator: boolean): ValidationError { + if (json == null) { + return json; + } + return { + + 'loc': ((json['loc'] as Array<any>).map(LocationInnerFromJSON)), + 'msg': json['msg'], + 'type': json['type'], + }; +} + +export function ValidationErrorToJSON(value?: ValidationError | null): any { + if (value == null) { + return value; + } + return { + + 'loc': ((value['loc'] as Array<any>).map(LocationInnerToJSON)), + 'msg': value['msg'], + 'type': value['type'], + }; +} + diff --git a/src/api/pfdcm/generated/models/XinetdCore.ts b/src/api/pfdcm/generated/models/XinetdCore.ts new file mode 100644 index 000000000..bb66f4c72 --- /dev/null +++ b/src/api/pfdcm/generated/models/XinetdCore.ts @@ -0,0 +1,124 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +/** + * The core data model + * @export + * @interface XinetdCore + */ +export interface XinetdCore { + /** + * + * @type {string} + * @memberof XinetdCore + */ + servicePort: string; + /** + * + * @type {string} + * @memberof XinetdCore + */ + tmpDir: string; + /** + * + * @type {string} + * @memberof XinetdCore + */ + logDir: string; + /** + * + * @type {string} + * @memberof XinetdCore + */ + dataDir: string; + /** + * + * @type {string} + * @memberof XinetdCore + */ + listener: string; + /** + * + * @type {string} + * @memberof XinetdCore + */ + patientMapDir: string; + /** + * + * @type {string} + * @memberof XinetdCore + */ + studyMapDir: string; + /** + * + * @type {string} + * @memberof XinetdCore + */ + seriesMapDir: string; +} + +/** + * Check if a given object implements the XinetdCore interface. + */ +export function instanceOfXinetdCore(value: object): value is XinetdCore { + if (!('servicePort' in value) || value['servicePort'] === undefined) return false; + if (!('tmpDir' in value) || value['tmpDir'] === undefined) return false; + if (!('logDir' in value) || value['logDir'] === undefined) return false; + if (!('dataDir' in value) || value['dataDir'] === undefined) return false; + if (!('listener' in value) || value['listener'] === undefined) return false; + if (!('patientMapDir' in value) || value['patientMapDir'] === undefined) return false; + if (!('studyMapDir' in value) || value['studyMapDir'] === undefined) return false; + if (!('seriesMapDir' in value) || value['seriesMapDir'] === undefined) return false; + return true; +} + +export function XinetdCoreFromJSON(json: any): XinetdCore { + return XinetdCoreFromJSONTyped(json, false); +} + +export function XinetdCoreFromJSONTyped(json: any, ignoreDiscriminator: boolean): XinetdCore { + if (json == null) { + return json; + } + return { + + 'servicePort': json['servicePort'], + 'tmpDir': json['tmpDir'], + 'logDir': json['logDir'], + 'dataDir': json['dataDir'], + 'listener': json['listener'], + 'patientMapDir': json['patient_mapDir'], + 'studyMapDir': json['study_mapDir'], + 'seriesMapDir': json['series_mapDir'], + }; +} + +export function XinetdCoreToJSON(value?: XinetdCore | null): any { + if (value == null) { + return value; + } + return { + + 'servicePort': value['servicePort'], + 'tmpDir': value['tmpDir'], + 'logDir': value['logDir'], + 'dataDir': value['dataDir'], + 'listener': value['listener'], + 'patient_mapDir': value['patientMapDir'], + 'study_mapDir': value['studyMapDir'], + 'series_mapDir': value['seriesMapDir'], + }; +} + diff --git a/src/api/pfdcm/generated/models/XinetdDBPutModel.ts b/src/api/pfdcm/generated/models/XinetdDBPutModel.ts new file mode 100644 index 000000000..42df069aa --- /dev/null +++ b/src/api/pfdcm/generated/models/XinetdDBPutModel.ts @@ -0,0 +1,68 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { XinetdCore } from './XinetdCore'; +import { + XinetdCoreFromJSON, + XinetdCoreFromJSONTyped, + XinetdCoreToJSON, +} from './XinetdCore'; + +/** + * + * @export + * @interface XinetdDBPutModel + */ +export interface XinetdDBPutModel { + /** + * + * @type {XinetdCore} + * @memberof XinetdDBPutModel + */ + info: XinetdCore; +} + +/** + * Check if a given object implements the XinetdDBPutModel interface. + */ +export function instanceOfXinetdDBPutModel(value: object): value is XinetdDBPutModel { + if (!('info' in value) || value['info'] === undefined) return false; + return true; +} + +export function XinetdDBPutModelFromJSON(json: any): XinetdDBPutModel { + return XinetdDBPutModelFromJSONTyped(json, false); +} + +export function XinetdDBPutModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): XinetdDBPutModel { + if (json == null) { + return json; + } + return { + + 'info': XinetdCoreFromJSON(json['info']), + }; +} + +export function XinetdDBPutModelToJSON(value?: XinetdDBPutModel | null): any { + if (value == null) { + return value; + } + return { + + 'info': XinetdCoreToJSON(value['info']), + }; +} + diff --git a/src/api/pfdcm/generated/models/XinetdDBReturnModel.ts b/src/api/pfdcm/generated/models/XinetdDBReturnModel.ts new file mode 100644 index 000000000..5a1e54384 --- /dev/null +++ b/src/api/pfdcm/generated/models/XinetdDBReturnModel.ts @@ -0,0 +1,101 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + +import { mapValues } from '../runtime'; +import type { ModelsListenerModelTime } from './ModelsListenerModelTime'; +import { + ModelsListenerModelTimeFromJSON, + ModelsListenerModelTimeFromJSONTyped, + ModelsListenerModelTimeToJSON, +} from './ModelsListenerModelTime'; +import type { XinetdCore } from './XinetdCore'; +import { + XinetdCoreFromJSON, + XinetdCoreFromJSONTyped, + XinetdCoreToJSON, +} from './XinetdCore'; + +/** + * + * @export + * @interface XinetdDBReturnModel + */ +export interface XinetdDBReturnModel { + /** + * + * @type {XinetdCore} + * @memberof XinetdDBReturnModel + */ + info: XinetdCore; + /** + * + * @type {ModelsListenerModelTime} + * @memberof XinetdDBReturnModel + */ + timeCreated: ModelsListenerModelTime; + /** + * + * @type {ModelsListenerModelTime} + * @memberof XinetdDBReturnModel + */ + timeModified: ModelsListenerModelTime; + /** + * + * @type {string} + * @memberof XinetdDBReturnModel + */ + message: string; +} + +/** + * Check if a given object implements the XinetdDBReturnModel interface. + */ +export function instanceOfXinetdDBReturnModel(value: object): value is XinetdDBReturnModel { + if (!('info' in value) || value['info'] === undefined) return false; + if (!('timeCreated' in value) || value['timeCreated'] === undefined) return false; + if (!('timeModified' in value) || value['timeModified'] === undefined) return false; + if (!('message' in value) || value['message'] === undefined) return false; + return true; +} + +export function XinetdDBReturnModelFromJSON(json: any): XinetdDBReturnModel { + return XinetdDBReturnModelFromJSONTyped(json, false); +} + +export function XinetdDBReturnModelFromJSONTyped(json: any, ignoreDiscriminator: boolean): XinetdDBReturnModel { + if (json == null) { + return json; + } + return { + + 'info': XinetdCoreFromJSON(json['info']), + 'timeCreated': ModelsListenerModelTimeFromJSON(json['time_created']), + 'timeModified': ModelsListenerModelTimeFromJSON(json['time_modified']), + 'message': json['message'], + }; +} + +export function XinetdDBReturnModelToJSON(value?: XinetdDBReturnModel | null): any { + if (value == null) { + return value; + } + return { + + 'info': XinetdCoreToJSON(value['info']), + 'time_created': ModelsListenerModelTimeToJSON(value['timeCreated']), + 'time_modified': ModelsListenerModelTimeToJSON(value['timeModified']), + 'message': value['message'], + }; +} + diff --git a/src/api/pfdcm/generated/models/index.ts b/src/api/pfdcm/generated/models/index.ts new file mode 100644 index 000000000..e1fb462d3 --- /dev/null +++ b/src/api/pfdcm/generated/models/index.ts @@ -0,0 +1,40 @@ +/* tslint:disable */ +/* eslint-disable */ +export * from './AboutModel'; +export * from './BodyPACSPypxApiV1PACSSyncPypxPost'; +export * from './BodyPACSServiceHandlerApiV1PACSThreadPypxPost'; +export * from './BodyPACSobjPortUpdateApiV1PACSservicePortPost'; +export * from './DcmtkCore'; +export * from './DcmtkDBPutModel'; +export * from './DcmtkDBReturnModel'; +export * from './Dicom'; +export * from './EchoModel'; +export * from './HTTPValidationError'; +export * from './HelloModel'; +export * from './ListenerDBreturnModel'; +export * from './ListenerHandlerStatus'; +export * from './LocationInner'; +export * from './ModelsListenerModelTime'; +export * from './ModelsListenerModelValueStr'; +export * from './ModelsPacsQRmodelValueStr'; +export * from './ModelsPacsSetupModelTime'; +export * from './ModelsPacsSetupModelValueStr'; +export * from './ModelsSmdbSetupModelValueStr'; +export * from './PACSasync'; +export * from './PACSdbPutModel'; +export * from './PACSdbReturnModel'; +export * from './PACSqueryCore'; +export * from './PACSsetupCore'; +export * from './SMDBFsConfig'; +export * from './SMDBFsCore'; +export * from './SMDBFsReturnModel'; +export * from './SMDBcubeConfig'; +export * from './SMDBcubeCore'; +export * from './SMDBcubeReturnModel'; +export * from './SMDBswiftConfig'; +export * from './SMDBswiftCore'; +export * from './SysInfoModel'; +export * from './ValidationError'; +export * from './XinetdCore'; +export * from './XinetdDBPutModel'; +export * from './XinetdDBReturnModel'; diff --git a/src/api/pfdcm/generated/runtime.ts b/src/api/pfdcm/generated/runtime.ts new file mode 100644 index 000000000..1e066c3d4 --- /dev/null +++ b/src/api/pfdcm/generated/runtime.ts @@ -0,0 +1,426 @@ +/* tslint:disable */ +/* eslint-disable */ +/** + * pfdcm + * No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator) + * + * The version of the OpenAPI document: 3.1.2 + * + * + * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech). + * https://openapi-generator.tech + * Do not edit the class manually. + */ + + +export const BASE_PATH = "http://localhost".replace(/\/+$/, ""); + +export interface ConfigurationParameters { + basePath?: string; // override base path + fetchApi?: FetchAPI; // override for fetch implementation + middleware?: Middleware[]; // middleware to apply before/after fetch requests + queryParamsStringify?: (params: HTTPQuery) => string; // stringify function for query strings + username?: string; // parameter for basic security + password?: string; // parameter for basic security + apiKey?: string | Promise<string> | ((name: string) => string | Promise<string>); // parameter for apiKey security + accessToken?: string | Promise<string> | ((name?: string, scopes?: string[]) => string | Promise<string>); // parameter for oauth2 security + headers?: HTTPHeaders; //header params we want to use on every request + credentials?: RequestCredentials; //value for the credentials param we want to use on each request +} + +export class Configuration { + constructor(private configuration: ConfigurationParameters = {}) {} + + set config(configuration: Configuration) { + this.configuration = configuration; + } + + get basePath(): string { + return this.configuration.basePath != null ? this.configuration.basePath : BASE_PATH; + } + + get fetchApi(): FetchAPI | undefined { + return this.configuration.fetchApi; + } + + get middleware(): Middleware[] { + return this.configuration.middleware || []; + } + + get queryParamsStringify(): (params: HTTPQuery) => string { + return this.configuration.queryParamsStringify || querystring; + } + + get username(): string | undefined { + return this.configuration.username; + } + + get password(): string | undefined { + return this.configuration.password; + } + + get apiKey(): ((name: string) => string | Promise<string>) | undefined { + const apiKey = this.configuration.apiKey; + if (apiKey) { + return typeof apiKey === 'function' ? apiKey : () => apiKey; + } + return undefined; + } + + get accessToken(): ((name?: string, scopes?: string[]) => string | Promise<string>) | undefined { + const accessToken = this.configuration.accessToken; + if (accessToken) { + return typeof accessToken === 'function' ? accessToken : async () => accessToken; + } + return undefined; + } + + get headers(): HTTPHeaders | undefined { + return this.configuration.headers; + } + + get credentials(): RequestCredentials | undefined { + return this.configuration.credentials; + } +} + +export const DefaultConfig = new Configuration(); + +/** + * This is the base class for all generated API classes. + */ +export class BaseAPI { + + private static readonly jsonRegex = new RegExp('^(:?application\/json|[^;/ \t]+\/[^;/ \t]+[+]json)[ \t]*(:?;.*)?$', 'i'); + private middleware: Middleware[]; + + constructor(protected configuration = DefaultConfig) { + this.middleware = configuration.middleware; + } + + withMiddleware<T extends BaseAPI>(this: T, ...middlewares: Middleware[]) { + const next = this.clone<T>(); + next.middleware = next.middleware.concat(...middlewares); + return next; + } + + withPreMiddleware<T extends BaseAPI>(this: T, ...preMiddlewares: Array<Middleware['pre']>) { + const middlewares = preMiddlewares.map((pre) => ({ pre })); + return this.withMiddleware<T>(...middlewares); + } + + withPostMiddleware<T extends BaseAPI>(this: T, ...postMiddlewares: Array<Middleware['post']>) { + const middlewares = postMiddlewares.map((post) => ({ post })); + return this.withMiddleware<T>(...middlewares); + } + + /** + * Check if the given MIME is a JSON MIME. + * JSON MIME examples: + * application/json + * application/json; charset=UTF8 + * APPLICATION/JSON + * application/vnd.company+json + * @param mime - MIME (Multipurpose Internet Mail Extensions) + * @return True if the given MIME is JSON, false otherwise. + */ + protected isJsonMime(mime: string | null | undefined): boolean { + if (!mime) { + return false; + } + return BaseAPI.jsonRegex.test(mime); + } + + protected async request(context: RequestOpts, initOverrides?: RequestInit | InitOverrideFunction): Promise<Response> { + const { url, init } = await this.createFetchParams(context, initOverrides); + const response = await this.fetchApi(url, init); + if (response && (response.status >= 200 && response.status < 300)) { + return response; + } + throw new ResponseError(response, 'Response returned an error code'); + } + + private async createFetchParams(context: RequestOpts, initOverrides?: RequestInit | InitOverrideFunction) { + let url = this.configuration.basePath + context.path; + if (context.query !== undefined && Object.keys(context.query).length !== 0) { + // only add the querystring to the URL if there are query parameters. + // this is done to avoid urls ending with a "?" character which buggy webservers + // do not handle correctly sometimes. + url += '?' + this.configuration.queryParamsStringify(context.query); + } + + const headers = Object.assign({}, this.configuration.headers, context.headers); + Object.keys(headers).forEach(key => headers[key] === undefined ? delete headers[key] : {}); + + const initOverrideFn = + typeof initOverrides === "function" + ? initOverrides + : async () => initOverrides; + + const initParams = { + method: context.method, + headers, + body: context.body, + credentials: this.configuration.credentials, + }; + + const overriddenInit: RequestInit = { + ...initParams, + ...(await initOverrideFn({ + init: initParams, + context, + })) + }; + + let body: any; + if (isFormData(overriddenInit.body) + || (overriddenInit.body instanceof URLSearchParams) + || isBlob(overriddenInit.body)) { + body = overriddenInit.body; + } else if (this.isJsonMime(headers['Content-Type'])) { + body = JSON.stringify(overriddenInit.body); + } else { + body = overriddenInit.body; + } + + const init: RequestInit = { + ...overriddenInit, + body + }; + + return { url, init }; + } + + private fetchApi = async (url: string, init: RequestInit) => { + let fetchParams = { url, init }; + for (const middleware of this.middleware) { + if (middleware.pre) { + fetchParams = await middleware.pre({ + fetch: this.fetchApi, + ...fetchParams, + }) || fetchParams; + } + } + let response: Response | undefined = undefined; + try { + response = await (this.configuration.fetchApi || fetch)(fetchParams.url, fetchParams.init); + } catch (e) { + for (const middleware of this.middleware) { + if (middleware.onError) { + response = await middleware.onError({ + fetch: this.fetchApi, + url: fetchParams.url, + init: fetchParams.init, + error: e, + response: response ? response.clone() : undefined, + }) || response; + } + } + if (response === undefined) { + if (e instanceof Error) { + throw new FetchError(e, 'The request failed and the interceptors did not return an alternative response'); + } else { + throw e; + } + } + } + for (const middleware of this.middleware) { + if (middleware.post) { + response = await middleware.post({ + fetch: this.fetchApi, + url: fetchParams.url, + init: fetchParams.init, + response: response.clone(), + }) || response; + } + } + return response; + } + + /** + * Create a shallow clone of `this` by constructing a new instance + * and then shallow cloning data members. + */ + private clone<T extends BaseAPI>(this: T): T { + const constructor = this.constructor as any; + const next = new constructor(this.configuration); + next.middleware = this.middleware.slice(); + return next; + } +}; + +function isBlob(value: any): value is Blob { + return typeof Blob !== 'undefined' && value instanceof Blob; +} + +function isFormData(value: any): value is FormData { + return typeof FormData !== "undefined" && value instanceof FormData; +} + +export class ResponseError extends Error { + override name: "ResponseError" = "ResponseError"; + constructor(public response: Response, msg?: string) { + super(msg); + } +} + +export class FetchError extends Error { + override name: "FetchError" = "FetchError"; + constructor(public cause: Error, msg?: string) { + super(msg); + } +} + +export class RequiredError extends Error { + override name: "RequiredError" = "RequiredError"; + constructor(public field: string, msg?: string) { + super(msg); + } +} + +export const COLLECTION_FORMATS = { + csv: ",", + ssv: " ", + tsv: "\t", + pipes: "|", +}; + +export type FetchAPI = WindowOrWorkerGlobalScope['fetch']; + +export type Json = any; +export type HTTPMethod = 'GET' | 'POST' | 'PUT' | 'PATCH' | 'DELETE' | 'OPTIONS' | 'HEAD'; +export type HTTPHeaders = { [key: string]: string }; +export type HTTPQuery = { [key: string]: string | number | null | boolean | Array<string | number | null | boolean> | Set<string | number | null | boolean> | HTTPQuery }; +export type HTTPBody = Json | FormData | URLSearchParams; +export type HTTPRequestInit = { headers?: HTTPHeaders; method: HTTPMethod; credentials?: RequestCredentials; body?: HTTPBody }; +export type ModelPropertyNaming = 'camelCase' | 'snake_case' | 'PascalCase' | 'original'; + +export type InitOverrideFunction = (requestContext: { init: HTTPRequestInit, context: RequestOpts }) => Promise<RequestInit> + +export interface FetchParams { + url: string; + init: RequestInit; +} + +export interface RequestOpts { + path: string; + method: HTTPMethod; + headers: HTTPHeaders; + query?: HTTPQuery; + body?: HTTPBody; +} + +export function querystring(params: HTTPQuery, prefix: string = ''): string { + return Object.keys(params) + .map(key => querystringSingleKey(key, params[key], prefix)) + .filter(part => part.length > 0) + .join('&'); +} + +function querystringSingleKey(key: string, value: string | number | null | undefined | boolean | Array<string | number | null | boolean> | Set<string | number | null | boolean> | HTTPQuery, keyPrefix: string = ''): string { + const fullKey = keyPrefix + (keyPrefix.length ? `[${key}]` : key); + if (value instanceof Array) { + const multiValue = value.map(singleValue => encodeURIComponent(String(singleValue))) + .join(`&${encodeURIComponent(fullKey)}=`); + return `${encodeURIComponent(fullKey)}=${multiValue}`; + } + if (value instanceof Set) { + const valueAsArray = Array.from(value); + return querystringSingleKey(key, valueAsArray, keyPrefix); + } + if (value instanceof Date) { + return `${encodeURIComponent(fullKey)}=${encodeURIComponent(value.toISOString())}`; + } + if (value instanceof Object) { + return querystring(value as HTTPQuery, fullKey); + } + return `${encodeURIComponent(fullKey)}=${encodeURIComponent(String(value))}`; +} + +export function mapValues(data: any, fn: (item: any) => any) { + return Object.keys(data).reduce( + (acc, key) => ({ ...acc, [key]: fn(data[key]) }), + {} + ); +} + +export function canConsumeForm(consumes: Consume[]): boolean { + for (const consume of consumes) { + if ('multipart/form-data' === consume.contentType) { + return true; + } + } + return false; +} + +export interface Consume { + contentType: string; +} + +export interface RequestContext { + fetch: FetchAPI; + url: string; + init: RequestInit; +} + +export interface ResponseContext { + fetch: FetchAPI; + url: string; + init: RequestInit; + response: Response; +} + +export interface ErrorContext { + fetch: FetchAPI; + url: string; + init: RequestInit; + error: unknown; + response?: Response; +} + +export interface Middleware { + pre?(context: RequestContext): Promise<FetchParams | void>; + post?(context: ResponseContext): Promise<Response | void>; + onError?(context: ErrorContext): Promise<Response | void>; +} + +export interface ApiResponse<T> { + raw: Response; + value(): Promise<T>; +} + +export interface ResponseTransformer<T> { + (json: any): T; +} + +export class JSONApiResponse<T> { + constructor(public raw: Response, private transformer: ResponseTransformer<T> = (jsonValue: any) => jsonValue) {} + + async value(): Promise<T> { + return this.transformer(await this.raw.json()); + } +} + +export class VoidApiResponse { + constructor(public raw: Response) {} + + async value(): Promise<void> { + return undefined; + } +} + +export class BlobApiResponse { + constructor(public raw: Response) {} + + async value(): Promise<Blob> { + return await this.raw.blob(); + }; +} + +export class TextApiResponse { + constructor(public raw: Response) {} + + async value(): Promise<string> { + return await this.raw.text(); + }; +} diff --git a/src/api/pfdcm/index.test.ts b/src/api/pfdcm/index.test.ts new file mode 100644 index 000000000..3fb28ea70 --- /dev/null +++ b/src/api/pfdcm/index.test.ts @@ -0,0 +1,38 @@ +import { test, expect } from "vitest"; +import { PfdcmClient, Configuration } from "./index.ts"; +import { pipe } from "fp-ts/function"; +import * as TE from "fp-ts/TaskEither"; +import { PfdcmEnvironmentalDetailApi } from "./generated"; + +test("PfdcmClient", async (context) => { + const url = process.env.VITE_PFDCM_URL; + // const url = 'http://localhost:8088' + const configuration = new Configuration({ basePath: url }); + try { + const pfdcmDetailClient = new PfdcmEnvironmentalDetailApi(configuration); + const hello = await pfdcmDetailClient.readHelloApiV1HelloGet(); + expect(hello.name).toBe("pfdcm_hello"); + } catch (e) { + // pfdcm 'hello' endpoint not working, is pfdcm online? + context.skip(); + } + + const client = new PfdcmClient(configuration); + const getServices = pipe(client.getPacsServices(), TE.toUnion); + expect(await getServices()).toContain("MINICHRISORTHANC"); + + const query = { patientID: "1449c1d" }; + const queryAndAssertStudies = pipe( + client.query("MINICHRISORTHANC", query), + TE.mapLeft((e) => expect(e).toBeNull()), + TE.map((list) => { + const { study, series } = list[0]; + expect(study.PatientName).toBe("anonymized"); + expect(study.PatientBirthDate).toStrictEqual(new Date(2009, 6, 1)); + expect(series.map((s) => s.SeriesDescription.trim())).toContain( + "SAG MPRAGE 220 FOV", + ); + }), + ); + await queryAndAssertStudies(); +}); diff --git a/src/api/pfdcm/index.ts b/src/api/pfdcm/index.ts new file mode 100644 index 000000000..9f75cddcd --- /dev/null +++ b/src/api/pfdcm/index.ts @@ -0,0 +1,3 @@ +export { Configuration } from "./generated"; +export { PfdcmClient } from "./client"; +export type { PACSqueryCore } from "./generated"; diff --git a/src/api/pfdcm/models.ts b/src/api/pfdcm/models.ts new file mode 100644 index 000000000..abd937ff2 --- /dev/null +++ b/src/api/pfdcm/models.ts @@ -0,0 +1,88 @@ +import { PACSqueryCore } from "./generated"; + +type PypxTag = { + tag: 0 | string; + value: 0 | string; + label: string; +}; + +type Pypx = { + status: "success" | "error"; + command: string; + data: ReadonlyArray<{ + [key: string]: PypxTag | ReadonlyArray<{ [key: string]: PypxTag }>; + }>; + args: PACSqueryCore; +}; + +/** + * PFDCM "find" endpoint response, in its unprocessed and ugly original form. + * + * See https://github.com/FNNDSC/pfdcm/blob/3.1.22/pfdcm/controllers/pacsQRcontroller.py#L171-L176 + */ +type PypxFind = { + status: boolean; + find: {}; + message: string; + PACSdirective: PACSqueryCore; + pypx: Pypx; +}; + +/** + * DICOM study metadata. + */ +type Study = { + SpecificCharacterSet: string; + StudyDate: string; + AccessionNumber: string; + RetrieveAETitle: string; + ModalitiesInStudy: string; + StudyDescription: string; + PatientName: string; + PatientID: string; + PatientBirthDate: Date | null; + PatientSex: string; + PatientAge: number | null; + ProtocolName: string; + AcquisitionProtocolName: string; + AcquisitionProtocolDescription: string; + StudyInstanceUID: string; + NumberOfStudyRelatedSeries: string; + PerformedStationAETitle: string; +}; + +/** + * DICOM series metadata. + */ +type Series = { + SpecificCharacterSet: string; + StudyDate: string; + SeriesDate: string; + AccessionNumber: string; + RetrieveAETitle: string; + Modality: string; + StudyDescription: string; + SeriesDescription: string; + PatientName: string; + PatientID: string; + PatientBirthDate: Date | null; + PatientSex: string; + PatientAge: number | null; + ProtocolName: string; + AcquisitionProtocolName: string; + AcquisitionProtocolDescription: string; + StudyInstanceUID: string; + SeriesInstanceUID: string; + NumberOfSeriesRelatedInstances: string; + PerformedStationAETitle: string; +}; + +/** + * PACS query response data. + */ +type StudyAndSeries = { + study: Study; + series: ReadonlyArray<Series>; +}; + +export type { PypxFind, Pypx, PypxTag, Study, Series, StudyAndSeries }; diff --git a/src/components/Pacs/pfdcmClient.tsx b/src/components/Pacs/pfdcmClient.tsx index a8e39c8e6..bb5c50f9f 100644 --- a/src/components/Pacs/pfdcmClient.tsx +++ b/src/components/Pacs/pfdcmClient.tsx @@ -19,7 +19,7 @@ class PfdcmClient { private readonly url: string; constructor() { - this.url = import.meta.env.VITE_PFDCM_URL || ""; + this.url = import.meta.env.VITE_PFDCM_URL + "/" || ""; } async getPacsServices(): Promise<ReadonlyArray<string>> { From 090efc645c1e670a7a1fb208ad1adfa8ca62cb23 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Mon, 16 Sep 2024 14:55:30 -0400 Subject: [PATCH 194/337] feat: Implement the scroll feature in Dicom Display --- .../FeedOutputBrowser/FeedOutputBrowser.tsx | 6 +- .../FeedOutputBrowser/FileBrowser.tsx | 4 + .../FeedOutputBrowser/useFeedBrowser.tsx | 2 +- .../NewLibrary/components/FileCard.tsx | 31 ++++++- .../NewLibrary/components/LibraryTable.tsx | 9 ++ src/components/NewLibrary/index.tsx | 15 +++- src/components/Preview/FileDetailView.tsx | 10 ++- .../Preview/displays/DcmDisplay.tsx | 90 +++++++++++++++---- .../Preview/displays/ViewerDisplay.tsx | 3 + .../Preview/displays/dicomUtils/utils.ts | 7 +- 10 files changed, 146 insertions(+), 31 deletions(-) diff --git a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx index 9f7bc73ae..b7e7fda0b 100644 --- a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx +++ b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx @@ -34,8 +34,8 @@ const FeedOutputBrowser: React.FC<FeedOutputBrowserProps> = () => { } = useFeedBrowser(); return ( <div style={{ height: "100%" }} className="feed-output-browser"> - {filesLoading ? ( - <SpinContainer title="Fetching Files..." /> + {statusTitle && statusTitles.includes(statusTitle) ? ( + <FetchFilesLoader title="Plugin executing. Files will be fetched when plugin completes" /> ) : pluginFilesPayload && selected && !isError ? ( <FileBrowser selected={selected} @@ -47,8 +47,6 @@ const FeedOutputBrowser: React.FC<FeedOutputBrowserProps> = () => { handlePagination={handlePagination} isLoading={filesLoading} /> - ) : statusTitle && statusTitles.includes(statusTitle) ? ( - <FetchFilesLoader title="Plugin executing. Files will be fetched when plugin completes" /> ) : isError ? ( <Alert type="error" description={error?.message} /> ) : ( diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index b182894ce..769e39f07 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -74,6 +74,7 @@ const FileBrowser = (props: FileBrowserProps) => { handlePagination, isLoading, } = props; + const selectedFile = useTypedSelector((state) => state.explorer.selectedFile); const drawerState = useTypedSelector((state) => state.drawers); const username = useTypedSelector((state) => state.user.username); @@ -173,6 +174,9 @@ const FileBrowser = (props: FileBrowserProps) => { preview="large" isPublic={feed?.data.public} list={pluginFilesPayload.filesMap} + fetchMore={fetchMore} + handlePagination={handlePagination} + filesLoading={isLoading} /> )} {drawerState.preview.currentlyActive === "xtk" && <XtkViewer />} diff --git a/src/components/FeedOutputBrowser/useFeedBrowser.tsx b/src/components/FeedOutputBrowser/useFeedBrowser.tsx index 71ccc03bc..c8e175ba7 100644 --- a/src/components/FeedOutputBrowser/useFeedBrowser.tsx +++ b/src/components/FeedOutputBrowser/useFeedBrowser.tsx @@ -44,7 +44,7 @@ export const useFeedBrowser = () => { const { data: pluginFilesPayload, - isLoading: filesLoading, + isFetching: filesLoading, isError, error, } = useQuery({ diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index 080e3bfae..eaa0a3513 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -154,11 +154,20 @@ type FilesCardProps = { files: FileBrowserFolderFile[]; computedPath: string; pagination?: Pagination; + // For dicom scrolling + list?: FileBrowserFolderFile[]; + fetchMore?: boolean; + handlePagination?: () => void; + filesLoading?: boolean; }; export const FilesCard: React.FC<FilesCardProps> = ({ files, computedPath, + list, + fetchMore, + handlePagination, + filesLoading, }) => ( <> {files.map((file) => ( @@ -166,6 +175,10 @@ export const FilesCard: React.FC<FilesCardProps> = ({ key={file.data.fname} file={file} computedPath={computedPath} + list={list} + fetchMore={fetchMore} + filesLoading={filesLoading} + handlePagination={handlePagination} /> ))} </> @@ -174,6 +187,11 @@ export const FilesCard: React.FC<FilesCardProps> = ({ type SubFileCardProps = { file: FileBrowserFolderFile; computedPath: string; + // For dicom scrolling + list?: FileBrowserFolderFile[]; + fetchMore?: boolean; + handlePagination?: () => void; + filesLoading?: boolean; }; export const getFileName = ( @@ -185,6 +203,10 @@ export const getFileName = ( export const SubFileCard: React.FC<SubFileCardProps> = ({ file, computedPath, + list, + fetchMore, + handlePagination, + filesLoading, }) => { const { isDarkTheme } = useContext(ThemeContext); const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); @@ -296,7 +318,14 @@ export const SubFileCard: React.FC<SubFileCardProps> = ({ isOpen={preview} onClose={() => setIsPreview(false)} > - <FileDetailView selectedFile={file} preview="large" /> + <FileDetailView + selectedFile={file} + preview="large" + list={list} + fetchMore={fetchMore} + handlePagination={handlePagination} + filesLoading={filesLoading} + /> </Modal> </> ); diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 0a255437f..7ba54b028 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -42,6 +42,9 @@ interface TableProps { }; computedPath: string; handleFolderClick: (folderName: string) => void; + fetchMore?: boolean; + handlePagination?: () => void; + filesLoading?: boolean; } const columnNames = { @@ -236,6 +239,9 @@ const LibraryTable: React.FC<TableProps> = ({ data, computedPath, handleFolderClick, + fetchMore, + handlePagination, + filesLoading, }) => { const navigate = useNavigate(); const [preview, setShowPreview] = useState(false); @@ -310,6 +316,9 @@ const LibraryTable: React.FC<TableProps> = ({ selectedFile={selectedFile} preview="large" list={data.files} + fetchMore={fetchMore} + handlePagination={handlePagination} + filesLoading={filesLoading} /> )} </Drawer> diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index f6934879b..c70630b6d 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -99,7 +99,7 @@ const NewLibrary = () => { const currentPathSplit = decodedPath.split("/library/")[1]; const computedPath = currentPathSplit || "/"; const queryKey = ["library_folders", computedPath, pageNumber]; - const { data, isLoading, isError, error } = useQuery({ + const { data, isFetching, isError, error } = useQuery({ queryKey: queryKey, queryFn: () => fetchFolders(computedPath, pageNumber), placeholderData: keepPreviousData, @@ -186,7 +186,7 @@ const NewLibrary = () => { </PageSection> <PageSection style={{ paddingBlockStart: "0" }}> - {isLoading && <SpinContainer title="Fetching Resources..." />} + {isFetching && <SpinContainer title="Fetching Resources..." />} {isError && <Alert type="error" description={error.message} />} {/* Render based on currentLayout */} @@ -207,8 +207,11 @@ const NewLibrary = () => { }} handleFolderClick={handleFolderClick} computedPath={computedPath} + fetchMore={fetchMore} + handlePagination={handlePagination} + filesLoading={isFetching} /> - {fetchMore && !isLoading && ( + {fetchMore && !isFetching && ( <Button onClick={handlePagination} variant="link"> Load more data... </Button> @@ -247,8 +250,12 @@ const NewLibrary = () => { files={data?.filesMap || []} computedPath={computedPath} pagination={data?.filesPagination} + list={data?.filesMap} + fetchMore={fetchMore} + handlePagination={handlePagination} + filesLoading={isFetching} /> - {fetchMore && !isLoading && ( + {fetchMore && !isFetching && ( <Button onClick={handlePagination} variant="link"> Load more data... </Button> diff --git a/src/components/Preview/FileDetailView.tsx b/src/components/Preview/FileDetailView.tsx index d4672f46d..f3421fd9a 100644 --- a/src/components/Preview/FileDetailView.tsx +++ b/src/components/Preview/FileDetailView.tsx @@ -47,7 +47,11 @@ interface AllProps { handlePrevious?: () => void; gallery?: boolean; isPublic?: boolean; + // These props enable pagination and fetch on scroll list?: IFileBlob[]; + fetchMore?: boolean; + handlePagination?: () => void; + filesLoading?: boolean; } export interface ActionState { @@ -131,7 +135,8 @@ const FileDetailView = (props: AllProps) => { }, }); - const { selectedFile, preview } = props; + const { selectedFile, preview, fetchMore, handlePagination, filesLoading } = + props; let viewerName = ""; const fileType = getFileExtension(selectedFile?.data.fname); if (fileType) { @@ -206,6 +211,9 @@ const FileDetailView = (props: AllProps) => { selectedFile={selectedFile} // Optional for dicom scrolling list={props.list} + fetchMore={fetchMore} + handlePagination={handlePagination} + filesLoading={filesLoading} /> )} </div> diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index c209e5068..e6d1e0a15 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -12,6 +12,7 @@ import { SpinContainer } from "../../Common"; import useSize from "../../FeedTree/useSize"; import type { ActionState } from "../FileDetailView"; import { + events, type IStackViewport, basicInit, cleanupCornerstoneTooling, @@ -28,15 +29,29 @@ export type DcmImageProps = { actionState: ActionState; preview: string; list?: IFileBlob[]; + fetchMore?: boolean; + handlePagination?: () => void; + filesLoading?: boolean; }; const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { - const { selectedFile, actionState, preview, list } = props; + const { + selectedFile, + actionState, + preview, + list, + fetchMore, + handlePagination, + filesLoading, + } = props; const [activeViewport, setActiveViewport] = useState< IStackViewport | undefined >(); + + const [currentImageIndex, setCurrentImageIndex] = useState(0); const [imageStack, setImageStack] = useState<string[]>([]); const [renderingEngine, setRenderingEngine] = useState<RenderingEngine>(); + const [isLoadingMore, setIsLoadingMore] = useState(false); const dicomImageRef = useRef<HTMLDivElement>(null); const uniqueId = `${selectedFile?.data.id || v4()}`; const elementId = `cornerstone-element-${uniqueId}`; @@ -86,7 +101,6 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { imageID = await loadDicomImage(blob); } else { // Code to view png and jpg file types in cornerstone. Currently we are using the default image display so this code is redundant. - // This code should be deleted in the future. const fileviewer = new FileViewerModel(); const fileName = fileviewer.getFileName( @@ -122,27 +136,27 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { }, [size]); const loadMoreImages = async (signal: AbortSignal) => { - const newImageStack = []; + setIsLoadingMore(true); + const newImageStack = [...imageStack]; if (list) { - for (const file of list) { - if (signal.aborted) return; - const extension = getFileExtension(file.data.fname); - let imageId: string; - if (extension === "dcm") { - const blob = await file.getFileBlob(); - imageId = await loadDicomImage(blob); // Load and generate the image ID - } else { - continue; + for (const file of list.slice(imageStack.length)) { + if (signal.aborted) { + setIsLoadingMore(false); + return; } + const blob = await file.getFileBlob(); + const imageId = await loadDicomImage(blob); // Load and generate the image ID newImageStack.push(imageId); // Add the new image ID to the stack } setImageStack(newImageStack); if (activeViewport) { - await activeViewport.setStack(newImageStack); + const currentIndex = activeViewport.getCurrentImageIdIndex(); + await activeViewport.setStack(newImageStack, currentIndex); activeViewport.render(); } } + setIsLoadingMore(false); }; useEffect(() => { @@ -161,17 +175,63 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { return () => { controller.abort(); // Abort loading images on unmount }; - }, [list, activeViewport]); + }, [list, fetchMore, activeViewport]); + + useEffect(() => { + if (activeViewport && list) { + const element = activeViewport.element; + + const handleImageRendered = (_event: any) => { + const newIndex = activeViewport.getCurrentImageIdIndex(); + setCurrentImageIndex(newIndex + 1); + }; + + const handleFetchMoreImages = (_event: any) => { + const id = activeViewport.getCurrentImageIdIndex(); + if ( + id >= Math.floor(imageStack.length / 3) && + list.length === imageStack.length && + fetchMore && + handlePagination && + !filesLoading && + !isLoadingMore + ) { + handlePagination(); + } + }; + + element.addEventListener(events.IMAGE_RENDERED, handleImageRendered); + element.addEventListener( + events.STACK_VIEWPORT_SCROLL, + handleFetchMoreImages, + ); + + return () => { + element.removeEventListener(events.IMAGE_RENDERED, handleImageRendered); + element.removeEventListener( + events.STACK_VIEWPORT_SCROLL, + handleFetchMoreImages, + ); + }; + } + }, [activeViewport, imageStack, fetchMore, handlePagination]); return ( <> {isLoading && <SpinContainer title="Displaying image..." />} - <div id="content" ref={dicomImageRef} className={preview === "large" ? "dcm-preview" : ""} > + <div> + {isLoadingMore ? ( + <i>Loading More Images...</i> + ) : ( + `Images Loaded: ${currentImageIndex}/${imageStack.length}` + )} + </div> + <div id={elementId} /> </div> </> diff --git a/src/components/Preview/displays/ViewerDisplay.tsx b/src/components/Preview/displays/ViewerDisplay.tsx index 49cebb2c8..f33537dc7 100644 --- a/src/components/Preview/displays/ViewerDisplay.tsx +++ b/src/components/Preview/displays/ViewerDisplay.tsx @@ -34,6 +34,9 @@ interface ViewerDisplayProps { actionState: ActionState; selectedFile: FileBrowserFolderFile | PACSFile; list?: IFileBlob[]; + fetchMore?: boolean; + handlePagination?: () => void; + filesLoading?: boolean; } const ViewerDisplay: React.FC<ViewerDisplayProps> = ( diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index 2ae6cb61c..d719c6b34 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -6,6 +6,7 @@ import { init, metaData, volumeLoader, + EVENTS, } from "@cornerstonejs/core"; import * as cornerstone from "@cornerstonejs/core"; import cornerstonejsDICOMImageLoader from "@cornerstonejs/dicom-image-loader"; @@ -43,6 +44,7 @@ const { Enums: csToolsEnums, } = cornerstoneTools; const { MouseBindings } = csToolsEnums; +export const events = EVENTS; let toolGroup: CornerstoneToolTypes.IToolGroup | undefined; @@ -206,7 +208,6 @@ interface DisplayArea { imagePoint: ImagePoint; canvasPoint: ImagePoint; }; - // storeAsInitialCamera?: boolean; } interface ViewportInputOptions { @@ -238,7 +239,6 @@ function createDisplayArea( imagePoint, canvasPoint, }, - // storeAsInitialCamera: true, }, }; } @@ -281,9 +281,6 @@ export const displayDicomImage = async ( cornerstoneTools.utilities.stackPrefetch.enable(viewport.element); viewport.render(); - viewport.element.addEventListener("cornerstoneimagerendered", () => { - const currentIndex = viewport.getCurrentImageIdIndex(); - }); // Set the stack scroll mouse wheel tool toolGroup?.setToolActive(StackScrollMouseWheelTool.toolName); From 827f252653a111005e7170b02562d055017a3fe1 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Mon, 16 Sep 2024 16:20:17 -0400 Subject: [PATCH 195/337] feat: Updates to the dicom viewer --- .../FeedOutputBrowser/FileBrowser.tsx | 1 - .../NewLibrary/components/LibraryTable.tsx | 2 + src/components/Preview/FileDetailView.tsx | 31 ++++++++---- src/components/Preview/HelperComponent.tsx | 48 ++++++++++++++----- .../Preview/displays/dicomUtils/utils.ts | 2 + 5 files changed, 61 insertions(+), 23 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 769e39f07..95dc6f85c 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -172,7 +172,6 @@ const FileBrowser = (props: FileBrowserProps) => { gallery={true} selectedFile={selectedFile} preview="large" - isPublic={feed?.data.public} list={pluginFilesPayload.filesMap} fetchMore={fetchMore} handlePagination={handlePagination} diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 7ba54b028..14881de07 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -313,12 +313,14 @@ const LibraryTable: React.FC<TableProps> = ({ > {selectedFile && ( <FileDetailView + gallery={true} selectedFile={selectedFile} preview="large" list={data.files} fetchMore={fetchMore} handlePagination={handlePagination} filesLoading={filesLoading} + isDrawer={true} /> )} </Drawer> diff --git a/src/components/Preview/FileDetailView.tsx b/src/components/Preview/FileDetailView.tsx index f3421fd9a..ad8f00185 100644 --- a/src/components/Preview/FileDetailView.tsx +++ b/src/components/Preview/FileDetailView.tsx @@ -19,9 +19,9 @@ import React, { } from "react"; import { ErrorBoundary } from "react-error-boundary"; import { - type IFileBlob, fileViewerMap, getFileExtension, + type IFileBlob, } from "../../api/model"; import { useTypedSelector } from "../../store/hooks"; import { SpinContainer } from "../Common"; @@ -46,12 +46,12 @@ interface AllProps { handleNext?: () => void; handlePrevious?: () => void; gallery?: boolean; - isPublic?: boolean; // These props enable pagination and fetch on scroll list?: IFileBlob[]; fetchMore?: boolean; handlePagination?: () => void; filesLoading?: boolean; + isDrawer?: boolean; } export interface ActionState { @@ -103,9 +103,7 @@ const FileDetailView = (props: AllProps) => { reader.onloadend = async () => { try { if (reader.result) { - //@ts-ignore - const byteArray = new Uint8Array(reader.result); - //@ts-ignore + const byteArray = new Uint8Array(reader.result as ArrayBuffer); const testOutput: any[] = []; const output: any[] = []; const dataSet = dicomParser.parseDicom(byteArray); @@ -124,19 +122,33 @@ const FileDetailView = (props: AllProps) => { }; if (result) { - reader.readAsArrayBuffer(result); + const blob = await selectedFile?.getFileBlob(); + if (blob) { + reader.readAsArrayBuffer(blob); + } else { + throw new Error("Failed to parse the file for dicom tags"); + } } }, []); const mutation = useMutation({ - mutationFn: displayTagInfo, + mutationFn: async (selectedFile: FileBrowserFolderFile | PACSFile) => { + await displayTagInfo(selectedFile); + }, + onError: (error: any) => { setParsingError(error.message); }, }); - const { selectedFile, preview, fetchMore, handlePagination, filesLoading } = - props; + const { + selectedFile, + preview, + fetchMore, + handlePagination, + filesLoading, + isDrawer, + } = props; let viewerName = ""; const fileType = getFileExtension(selectedFile?.data.fname); if (fileType) { @@ -219,6 +231,7 @@ const FileDetailView = (props: AllProps) => { </div> <TagInfoModal + isDrawer={true} handleModalToggle={(actionState, toolState) => { const previouslyActive = Object.keys(actionState)[0]; handleModalToggle(actionState, toolState, previouslyActive); diff --git a/src/components/Preview/HelperComponent.tsx b/src/components/Preview/HelperComponent.tsx index 513b5494c..73bc0f0df 100644 --- a/src/components/Preview/HelperComponent.tsx +++ b/src/components/Preview/HelperComponent.tsx @@ -1,8 +1,8 @@ +import type { FileBrowserFolderFile } from "@fnndsc/chrisapi"; import { Button, Modal, ModalVariant, Tooltip } from "@patternfly/react-core"; import type { ReactNode } from "react"; -import type { FileBrowserFolderFile } from "@fnndsc/chrisapi"; import ReactJson from "react-json-view"; -import { Alert } from "../Antd"; +import { Alert, Drawer } from "../Antd"; import { SpinContainer } from "../Common"; export const GalleryButtonContainer = ({ @@ -49,24 +49,17 @@ export const TagInfoModal = ({ handleModalToggle, parsingError, output, + isDrawer = false, }: { isModalOpen: boolean; handleModalToggle: (event: string, value: boolean) => void; parsingError: string; output?: any[]; file?: FileBrowserFolderFile; + isDrawer?: boolean; }) => { - return ( - <Modal - aria-label="tag info" - onEscapePress={() => { - handleModalToggle("TagInfo", !isModalOpen); - }} - variant={ModalVariant.large} - title="Dicom Tag" - isOpen={isModalOpen} - onClose={() => handleModalToggle("TagInfo", !isModalOpen)} - > + const content = ( + <> {parsingError ? ( <Alert closable type="error" description={parsingError} /> ) : output && Object.keys(output).length > 0 ? ( @@ -82,6 +75,35 @@ export const TagInfoModal = ({ ) : ( <SpinContainer title="Fetching Dicom Tags" /> )} + </> + ); + + if (isDrawer) { + return ( + <Drawer + title="Dicom Tag" + placement="right" + onClose={() => handleModalToggle("TagInfo", !isModalOpen)} + open={isModalOpen} + width={720} // You can adjust this value as needed + > + {content} + </Drawer> + ); + } + + return ( + <Modal + aria-label="tag info" + onEscapePress={() => { + handleModalToggle("TagInfo", !isModalOpen); + }} + variant={ModalVariant.large} + title="Dicom Tag" + isOpen={isModalOpen} + onClose={() => handleModalToggle("TagInfo", !isModalOpen)} + > + {content} </Modal> ); }; diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index d719c6b34..2f4703161 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -182,6 +182,8 @@ export const handleEvents = ( const previousTool = actionState.previouslyActive as string; const id = toolGroup?.id; + if (activeTool === "TagInfo") return; + if (id) { toolGroup?.setToolPassive(previousTool); if (activeTool === "Reset") { From b5434b55334eac725873c1cd819a41956708432c Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Mon, 16 Sep 2024 16:24:18 -0400 Subject: [PATCH 196/337] feat: Update the position of the image count --- src/components/Preview/displays/DcmDisplay.tsx | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index e6d1e0a15..0e8b9d96c 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -224,7 +224,14 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { ref={dicomImageRef} className={preview === "large" ? "dcm-preview" : ""} > - <div> + <div + style={{ + position: "absolute", + top: "0.5em", + left: "0.5em", + zIndex: "99999", + }} + > {isLoadingMore ? ( <i>Loading More Images...</i> ) : ( From 5d5b49fce945377f6d99701d545158b9ba90c102 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 17 Sep 2024 14:59:04 -0400 Subject: [PATCH 197/337] feat: replace npm with pnpm --- .github/workflows/test.yml | 33 +- package-lock.json | 9252 ----------------------------------- package.json | 67 +- pnpm-lock.yaml | 9143 ++++++++++++++++++++++++++++++++++ src/store/resources/saga.ts | 8 +- src/types/index.d.ts | 3 - 6 files changed, 9200 insertions(+), 9306 deletions(-) delete mode 100644 package-lock.json create mode 100644 pnpm-lock.yaml diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index d10262d6a..a82d0f5fe 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -18,12 +18,16 @@ jobs: uses: actions/setup-node@v4 with: node-version: 20.17 - cache: 'npm' + cache: 'pnpm' + - name: Install pnpm + run: npm install -g pnpm + - name: Install dependencies - run: npm ci + run: pnpm install --frozen-lockfile + - name: Unit tests - run: npm test + run: pnpm test # note to self: the sections test-public and test-local should be almost the same, except: # - local testing needs git submodules @@ -42,15 +46,18 @@ jobs: uses: actions/setup-node@v4 with: node-version: 20.17 - cache: 'npm' + cache: 'pnpm' + + - name: Install pnpm + run: npm install -g pnpm - name: Install dependencies - run: npm ci + run: pnpm install --frozen-lockfile - name: Install Playwright Browsers run: npx playwright install --with-deps - name: End-to-End tests env: TEST_SAFARI: yes - run: npm run test:e2e + run: pnpm run test:e2e - uses: actions/upload-artifact@v4 if: always() with: @@ -60,7 +67,7 @@ jobs: - name: Report coverage id: report if: always() - run: npm run test:lcov + run: pnpm run test:lcov - name: Upload E2E test coverage if: steps.report.outcome == 'success' uses: codecov/codecov-action@v4 @@ -82,17 +89,19 @@ jobs: uses: actions/setup-node@v4 with: node-version: 20.17 - cache: 'npm' + cache: 'pnpm' + - name: Install pnpm + run: npm install -g pnpm - name: Install dependencies - run: npm ci + run: pnpm install --frozen-lockfile - name: Install Playwright Browsers run: npx playwright install --with-deps - name: Setup tests - run: npm run test:prepare + run: pnpm run test:prepare - name: End-to-End tests env: TEST_SAFARI: yes - run: npm run test:e2e:local + run: pnpm run test:e2e:local - uses: actions/upload-artifact@v4 if: always() with: @@ -102,7 +111,7 @@ jobs: - name: Report coverage id: report if: always() - run: npm run test:lcov + run: pnpm run test:lcov - name: Upload E2E test coverage if: steps.report.outcome == 'success' uses: codecov/codecov-action@v4 diff --git a/package-lock.json b/package-lock.json deleted file mode 100644 index 7c85aaf5b..000000000 --- a/package-lock.json +++ /dev/null @@ -1,9252 +0,0 @@ -{ - "name": "chrisui", - "version": "0.0.0", - "lockfileVersion": 3, - "requires": true, - "packages": { - "": { - "name": "chrisui", - "version": "0.0.0", - "dependencies": { - "@cornerstonejs/core": "^1.84.4", - "@cornerstonejs/dicom-image-loader": "^1.84.4", - "@cornerstonejs/streaming-image-volume-loader": "^1.82.4", - "@cornerstonejs/tools": "^1.84.4", - "@fnndsc/chrisapi": "^1.22.0", - "@fontsource/inter": "^5.0.20", - "@niivue/niivue": "^0.41.1", - "@patternfly/react-catalog-view-extension": "^5.0.0", - "@patternfly/react-charts": "^7.3.0", - "@patternfly/react-core": "^5.3.4", - "@patternfly/react-log-viewer": "^5.2.0", - "@patternfly/react-table": "^5.3.4", - "@react-hook/resize-observer": "^2.0.1", - "@reduxjs/toolkit": "^2.2.7", - "@tanstack/react-query": "^5.51.1", - "@types/d3-shape": "^3.1.6", - "@types/d3-zoom": "^3.0.8", - "antd": "^5.20.3", - "axios": "^1.7.2", - "d3-hierarchy": "^1.1.9", - "d3-selection": "^3.0.0", - "d3-shape": "^3.2.0", - "d3-zoom": "^3.0.0", - "date-fns": "^3.6.0", - "dicom-parser": "^1.8.21", - "email-validator": "^2.0.4", - "fp-ts": "^2.16.8", - "hammerjs": "^2.0.8", - "immer": "^10.1.1", - "lodash": "^4.17.21", - "marked": "^13.0.2", - "micromark": "^4.0.0", - "micromark-extension-gfm": "^3.0.0", - "niivue-react": "github:niivue/niivue-react", - "p-queue": "^8.0.1", - "pako": "^1.0.11", - "preval.macro": "^5.0.0", - "query-string": "^9.0.0", - "rc-tree": "^5.8.0", - "react": "^18.3.1", - "react-activity": "^2.1.3", - "react-bootstrap-typeahead": "^6.2.3", - "react-cookie": "^7.1.4", - "react-dom": "^18.3.1", - "react-dropzone": "^14.2.3", - "react-error-boundary": "^4.0.13", - "react-force-graph-2d": "^1.25.3", - "react-json-view": "^1.21.3", - "react-lazylog": "^4.5.3", - "react-redux": "^9.1.0", - "react-router": "^6.21.3", - "react-router-dom": "^6.24.0", - "redux-saga": "^1.3.0", - "rusha": "^0.8.14", - "sanitize-html": "^2.11.0", - "shlex": "^2.1.2", - "sirv-cli": "^2.0.2", - "typescript": "^5.5.3", - "use-ackee": "^3.0.1", - "use-immer": "^0.10.0", - "uuid": "^9.0.1", - "vite-plugin-babel-macros": "^1.0.6" - }, - "devDependencies": { - "@biomejs/biome": "1.8.3", - "@faker-js/faker": "^8.4.0", - "@playwright/test": "^1.41.2", - "@redux-devtools/extension": "^3.3.0", - "@types/d3-hierarchy": "^1.1.7", - "@types/d3-selection": "^1.4.3", - "@types/lodash": "^4.14.202", - "@types/node": "^20.11.5", - "@types/react": "^18.3.1", - "@types/react-dom": "^18.3.0", - "@types/redux-logger": "^3.0.11", - "@types/uuid": "^9.0.6", - "@vitejs/plugin-react-swc": "^3.5.0", - "@vitest/coverage-v8": "^2.0.5", - "happy-dom": "^15.0.0", - "lefthook": "^1.6.1", - "nyc": "^17.0.0", - "playwright": "^1.41.2", - "redux-devtools-extension": "^2.13.9", - "redux-logger": "^3.0.6", - "rollup-plugin-node-builtins": "^2.0.0", - "vite": "^5.3.2", - "vite-plugin-istanbul": "^6.0.2", - "vitest": "^2.0.5" - } - }, - "node_modules/@ampproject/remapping": { - "version": "2.3.0", - "license": "Apache-2.0", - "dependencies": { - "@jridgewell/gen-mapping": "^0.3.5", - "@jridgewell/trace-mapping": "^0.3.24" - }, - "engines": { - "node": ">=6.0.0" - } - }, - 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{ - "version": "18.1.3", - "dev": true, - "license": "ISC", - "dependencies": { - "camelcase": "^5.0.0", - "decamelize": "^1.2.0" - }, - "engines": { - "node": ">=6" - } - } - } -} diff --git a/package.json b/package.json index 90ac17035..1e51ec89b 100644 --- a/package.json +++ b/package.json @@ -4,25 +4,25 @@ "version": "0.0.0", "scripts": { "start": "sirv dist --host --port ${PORT:=8080} --single --etag --quiet", - "__start": "# npm start command is used by s2i in OpenShift as the deployment command", - "dev": "npm run dev:local", - "dev:local": "npm run test:prepare && vite", + "__start": "# pnpm start command is used by s2i in OpenShift as the deployment command", + "dev": "pnpm run dev:local", + "dev:local": "pnpm run test:prepare && vite", "dev:public": "vite -c testing/publicCUBE/vite.config.ts", "dev:metal": "vite", "build": "vite build", "test": "vitest", "__test:prepare:comment": "# test:prepare runs CUBE locally and loads sample DICOM data into the PACS.", - "test:prepare": "npm run minichris:up && npm run get-dicoms && npm run minichris:wipe", + "test:prepare": "pnpm run minichris:up && pnpm run get-dicoms && pnpm run minichris:wipe", "test:e2e": "playwright test -c playwright.config.ts", - "test:e2e:local": "env TEST_LOCAL=yes npm run test:e2e", + "test:e2e:local": "env TEST_LOCAL=yes pnpm run test:e2e", "test:report": "nyc report --reporter=text", "test:lcov": "nyc report --reporter=lcov", "test:ui": "playwright test -c playwright.config.ts --ui", - "test:ui:local": "env TEST_LOCAL=yes npm run test:ui", - "test:codegen": "playwright codegen $(npm run -s get-running-url)", - "test:codegen:mobile": "playwright codegen --device 'Pixel 5' $(npm run -s get-running-url)", + "test:ui:local": "env TEST_LOCAL=yes pnpm run test:ui", + "test:codegen": "playwright codegen $(pnpm run -s get-running-url)", + "test:codegen:mobile": "playwright codegen --device 'Pixel 5' $(pnpm run -s get-running-url)", "__minichris:comment": "# The minichris:* commands are for running a ChRIS backend locally", - "minichris:up": "cd testing/miniChRIS && docker compose --profile pacs up -d && cd - && npm run chrisomatic", + "minichris:up": "cd testing/miniChRIS && docker compose --profile pacs up -d && cd - && pnpm run chrisomatic", "minichris:down": "cd testing/miniChRIS && ./unmake.sh", "minichris:wipe": "./testing/miniChRIS/scripts/clear_pacsfiles.sh", "chrisomatic": "testing/chrisomatic.sh", @@ -40,35 +40,35 @@ "dependencies": { "@cornerstonejs/core": "^1.84.4", "@cornerstonejs/dicom-image-loader": "^1.84.4", - "@cornerstonejs/streaming-image-volume-loader": "^1.82.4", + "@cornerstonejs/streaming-image-volume-loader": "^1.84.4", "@cornerstonejs/tools": "^1.84.4", "@fnndsc/chrisapi": "^1.22.0", "@fontsource/inter": "^5.0.20", - "@niivue/niivue": "^0.41.1", + "@niivue/niivue": "0.44.2", "@patternfly/react-catalog-view-extension": "^5.0.0", "@patternfly/react-charts": "^7.3.0", "@patternfly/react-core": "^5.3.4", + "@patternfly/react-icons": "^5.4.0", "@patternfly/react-log-viewer": "^5.2.0", + "@patternfly/react-styles": "^5.4.0", "@patternfly/react-table": "^5.3.4", "@react-hook/resize-observer": "^2.0.1", "@reduxjs/toolkit": "^2.2.7", - "@tanstack/react-query": "^5.51.1", - "@types/d3-shape": "^3.1.6", - "@types/d3-zoom": "^3.0.8", - "antd": "^5.20.3", + "@tanstack/react-query": "^5.56.2", + "antd": "^5.20.6", "axios": "^1.7.2", - "d3-hierarchy": "^1.1.9", + "d3-hierarchy": "^3.1.2", "d3-selection": "^3.0.0", "d3-shape": "^3.2.0", "d3-zoom": "^3.0.0", - "date-fns": "^3.6.0", + "date-fns": "^4.1.0", "dicom-parser": "^1.8.21", "email-validator": "^2.0.4", "fp-ts": "^2.16.8", "hammerjs": "^2.0.8", "immer": "^10.1.1", "lodash": "^4.17.21", - "marked": "^13.0.2", + "marked": "14.1.2", "micromark": "^4.0.0", "micromark-extension-gfm": "^3.0.0", "niivue-react": "github:niivue/niivue-react", @@ -88,44 +88,45 @@ "react-json-view": "^1.21.3", "react-lazylog": "^4.5.3", "react-redux": "^9.1.0", - "react-router": "^6.21.3", - "react-router-dom": "^6.24.0", + "react-router": "^6.26.2", + "react-router-dom": "^6.26.2", "redux-saga": "^1.3.0", "rusha": "^0.8.14", "sanitize-html": "^2.11.0", "shlex": "^2.1.2", "sirv-cli": "^2.0.2", - "typescript": "^5.5.3", + "typescript": "^5.6.2", "use-ackee": "^3.0.1", "use-immer": "^0.10.0", - "uuid": "^9.0.1", + "uuid": "^10.0.0", "vite-plugin-babel-macros": "^1.0.6" }, "devDependencies": { - "@biomejs/biome": "1.8.3", - "@faker-js/faker": "^8.4.0", + "@biomejs/biome": "1.9.1", + "@faker-js/faker": "^9.0.1", "@playwright/test": "^1.41.2", "@redux-devtools/extension": "^3.3.0", - "@types/d3-hierarchy": "^1.1.7", - "@types/d3-selection": "^1.4.3", + "@types/d3-hierarchy": "3.1.7", + "@types/d3-selection": "3.0.10", + "@types/d3-shape": "^3.1.6", + "@types/d3-zoom": "^3.0.8", "@types/lodash": "^4.14.202", - "@types/node": "^20.11.5", + "@types/node": "^22.5.5", "@types/react": "^18.3.1", "@types/react-dom": "^18.3.0", "@types/redux-logger": "^3.0.11", - "@types/uuid": "^9.0.6", + "@types/uuid": "10.0.0", "@vitejs/plugin-react-swc": "^3.5.0", - "@vitest/coverage-v8": "^2.0.5", + "@vitest/coverage-v8": "2.1.1", "happy-dom": "^15.0.0", "lefthook": "^1.6.1", "nyc": "^17.0.0", "playwright": "^1.41.2", - "redux-devtools-extension": "^2.13.9", - "redux-logger": "^3.0.6", + "redux-logger": "4.0.0", "rollup-plugin-node-builtins": "^2.0.0", - "vite": "^5.3.2", + "vite": "5.4.6", "vite-plugin-istanbul": "^6.0.2", - "vitest": "^2.0.5" + "vitest": "2.1.1" }, "type": "module" } diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml new file mode 100644 index 000000000..b71909eb7 --- /dev/null +++ b/pnpm-lock.yaml @@ -0,0 +1,9143 @@ +lockfileVersion: '9.0' + +settings: + autoInstallPeers: true + excludeLinksFromLockfile: false + +importers: + + .: + dependencies: + '@cornerstonejs/core': + specifier: ^1.84.4 + version: 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1) + '@cornerstonejs/dicom-image-loader': + specifier: ^1.84.4 + version: 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1) + '@cornerstonejs/streaming-image-volume-loader': + specifier: ^1.84.4 + version: 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1) + '@cornerstonejs/tools': + specifier: ^1.84.4 + version: 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(@icr/polyseg-wasm@0.4.0)(@kitware/vtk.js@30.4.1(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1))(@types/d3-array@3.2.1)(@types/d3-interpolate@3.0.4)(autoprefixer@10.4.20(postcss@8.4.47))(d3-array@3.2.4)(d3-interpolate@3.0.1)(gl-matrix@3.4.3)(webpack@5.94.0)(wslink@2.2.1) + '@fnndsc/chrisapi': + specifier: ^1.22.0 + version: 1.22.0 + '@fontsource/inter': + specifier: ^5.0.20 + version: 5.0.20 + '@niivue/niivue': + specifier: 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5.4.6(@types/node@22.5.5)(terser@5.33.0) + transitivePeerDependencies: + - '@types/node' + - less + - lightningcss + - sass + - sass-embedded + - stylus + - sugarss + - supports-color + - terser + + vite-plugin-babel-macros@1.0.6(vite@5.4.6(@types/node@22.5.5)(terser@5.33.0)): + dependencies: + '@babel/core': 7.25.2 + '@babel/plugin-syntax-jsx': 7.24.7(@babel/core@7.25.2) + '@babel/plugin-syntax-typescript': 7.25.4(@babel/core@7.25.2) + '@types/babel__core': 7.20.5 + babel-plugin-macros: 3.1.0 + vite: 5.4.6(@types/node@22.5.5)(terser@5.33.0) + transitivePeerDependencies: + - supports-color + + vite-plugin-istanbul@6.0.2(vite@5.4.6(@types/node@22.5.5)(terser@5.33.0)): + dependencies: + '@istanbuljs/load-nyc-config': 1.1.0 + espree: 10.1.0 + istanbul-lib-instrument: 6.0.3 + picocolors: 1.0.1 + source-map: 0.7.4 + test-exclude: 6.0.0 + vite: 5.4.6(@types/node@22.5.5)(terser@5.33.0) + transitivePeerDependencies: + - supports-color + + vite@5.4.6(@types/node@22.5.5)(terser@5.33.0): + dependencies: + esbuild: 0.21.5 + postcss: 8.4.47 + rollup: 4.21.1 + optionalDependencies: + '@types/node': 22.5.5 + fsevents: 2.3.3 + terser: 5.33.0 + + vitest@2.1.1(@types/node@22.5.5)(happy-dom@15.0.0)(terser@5.33.0): + dependencies: + '@vitest/expect': 2.1.1 + '@vitest/mocker': 2.1.1(@vitest/spy@2.1.1)(vite@5.4.6(@types/node@22.5.5)(terser@5.33.0)) + '@vitest/pretty-format': 2.1.1 + '@vitest/runner': 2.1.1 + '@vitest/snapshot': 2.1.1 + '@vitest/spy': 2.1.1 + '@vitest/utils': 2.1.1 + chai: 5.1.1 + debug: 4.3.6 + magic-string: 0.30.11 + pathe: 1.1.2 + std-env: 3.7.0 + tinybench: 2.9.0 + tinyexec: 0.3.0 + tinypool: 1.0.1 + tinyrainbow: 1.2.0 + vite: 5.4.6(@types/node@22.5.5)(terser@5.33.0) + vite-node: 2.1.1(@types/node@22.5.5)(terser@5.33.0) + why-is-node-running: 2.3.0 + optionalDependencies: + '@types/node': 22.5.5 + happy-dom: 15.0.0 + transitivePeerDependencies: + - less + - lightningcss + - msw + - sass + - sass-embedded + - stylus + - sugarss + - supports-color + - terser + + warning@4.0.3: + dependencies: + loose-envify: 1.4.0 + + watchpack@2.4.2: + dependencies: + glob-to-regexp: 0.4.1 + graceful-fs: 4.2.11 + + webgl-constants@1.1.1: {} + + webidl-conversions@3.0.1: {} + + webidl-conversions@7.0.0: {} + + webpack-sources@3.2.3: {} + + webpack@5.94.0: + dependencies: + '@types/estree': 1.0.5 + '@webassemblyjs/ast': 1.12.1 + '@webassemblyjs/wasm-edit': 1.12.1 + '@webassemblyjs/wasm-parser': 1.12.1 + acorn: 8.12.1 + acorn-import-attributes: 1.9.5(acorn@8.12.1) + browserslist: 4.23.3 + chrome-trace-event: 1.0.4 + enhanced-resolve: 5.17.1 + es-module-lexer: 1.5.4 + eslint-scope: 5.1.1 + events: 3.3.0 + glob-to-regexp: 0.4.1 + graceful-fs: 4.2.11 + json-parse-even-better-errors: 2.3.1 + loader-runner: 4.3.0 + mime-types: 2.1.35 + neo-async: 2.6.2 + schema-utils: 3.3.0 + tapable: 2.2.1 + terser-webpack-plugin: 5.3.10(webpack@5.94.0) + watchpack: 2.4.2 + webpack-sources: 3.2.3 + transitivePeerDependencies: + - '@swc/core' + - esbuild + - uglify-js + + webworker-promise@0.5.0: {} + + whatwg-fetch@2.0.4: {} + + whatwg-mimetype@3.0.0: {} + + whatwg-url@5.0.0: + dependencies: + tr46: 0.0.3 + webidl-conversions: 3.0.1 + + which-module@2.0.1: {} + + which@2.0.2: + dependencies: + isexe: 2.0.0 + + why-is-node-running@2.3.0: + dependencies: + siginfo: 2.0.0 + stackback: 0.0.2 + + worker-loader@3.0.8(webpack@5.94.0): + dependencies: + loader-utils: 2.0.4 + schema-utils: 3.3.0 + webpack: 5.94.0 + + wrap-ansi@6.2.0: + dependencies: + ansi-styles: 4.3.0 + string-width: 4.2.3 + strip-ansi: 6.0.1 + + wrap-ansi@7.0.0: + dependencies: + ansi-styles: 4.3.0 + string-width: 4.2.3 + strip-ansi: 6.0.1 + + wrap-ansi@8.1.0: + dependencies: + ansi-styles: 6.2.1 + string-width: 5.1.2 + strip-ansi: 7.1.0 + + wrappy@1.0.2: {} + + write-file-atomic@3.0.3: + dependencies: + imurmurhash: 0.1.4 + is-typedarray: 1.0.0 + signal-exit: 3.0.7 + typedarray-to-buffer: 3.1.5 + + wslink@2.2.1: + dependencies: + '@msgpack/msgpack': 2.8.0 + + xmlbuilder2@3.0.2: + dependencies: + '@oozcitak/dom': 1.15.10 + '@oozcitak/infra': 1.0.8 + '@oozcitak/util': 8.3.8 + '@types/node': 22.5.5 + js-yaml: 3.14.0 + + xss@1.0.14: + dependencies: + commander: 2.20.3 + cssfilter: 0.0.10 + + y18n@4.0.3: {} + + yallist@3.1.1: {} + + yaml@1.10.2: {} + + yargs-parser@18.1.3: + dependencies: + camelcase: 5.3.1 + decamelize: 1.2.0 + + yargs@15.4.1: + dependencies: + cliui: 6.0.0 + decamelize: 1.2.0 + find-up: 4.1.0 + get-caller-file: 2.0.5 + require-directory: 2.1.1 + require-main-filename: 2.0.0 + set-blocking: 2.0.0 + string-width: 4.2.3 + which-module: 2.0.1 + y18n: 4.0.3 + yargs-parser: 18.1.3 diff --git a/src/store/resources/saga.ts b/src/store/resources/saga.ts index 5ca5fc43f..f19b58977 100644 --- a/src/store/resources/saga.ts +++ b/src/store/resources/saga.ts @@ -1,9 +1,5 @@ -import type { - PluginInstance, - FileBrowserFolderFile, - FileBrowserFolderLinkFile, -} from "@fnndsc/chrisapi"; -import { all, delay, fork, put, takeEvery } from "@redux-saga/core/effects"; +import type { PluginInstance } from "@fnndsc/chrisapi"; +import { all, delay, fork, put, takeEvery } from "redux-saga/effects"; import { inflate, inflateRaw } from "pako"; import type { Task } from "redux-saga"; import ChrisAPIClient from "../../api/chrisapiclient"; diff --git a/src/types/index.d.ts b/src/types/index.d.ts index 748f4d160..ad50fe05b 100644 --- a/src/types/index.d.ts +++ b/src/types/index.d.ts @@ -1,8 +1,5 @@ -declare module "keymirror"; declare module "pako"; declare module "@patternfly/react-log-viewer"; -declare module "cornerstone-core"; -declare module "cornerstone-tools"; declare module "xtk"; declare module "dicom-parser"; declare module "rusha"; From 1a4ef7c47beb739a0f65a6f5464fe1d8e5c7e66d Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 17 Sep 2024 15:11:36 -0400 Subject: [PATCH 198/337] feat: Update .gitignore and remove .npmrc --- .gitignore | 2 ++ .npmrc | 1 - 2 files changed, 2 insertions(+), 1 deletion(-) delete mode 100644 .npmrc diff --git a/.gitignore b/.gitignore index ee831571d..471062221 100644 --- a/.gitignore +++ b/.gitignore @@ -36,3 +36,5 @@ yarn-error.log* .cache/ .yarnrc dist/ +pnpm-lock.yaml +.pnpm-store/ \ No newline at end of file diff --git a/.npmrc b/.npmrc deleted file mode 100644 index e9ee3cb4d..000000000 --- a/.npmrc +++ /dev/null @@ -1 +0,0 @@ -legacy-peer-deps=true \ No newline at end of file From 6b01e808fac7e186e94c33217b937d88785d5bbc Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 17 Sep 2024 15:15:26 -0400 Subject: [PATCH 199/337] feat: upgrade npm dependencies --- package.json | 4 ++-- pnpm-lock.yaml | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/package.json b/package.json index 1e51ec89b..316b57072 100644 --- a/package.json +++ b/package.json @@ -47,9 +47,9 @@ "@niivue/niivue": "0.44.2", "@patternfly/react-catalog-view-extension": "^5.0.0", "@patternfly/react-charts": "^7.3.0", - "@patternfly/react-core": "^5.3.4", + "@patternfly/react-core": "^5.4.0", "@patternfly/react-icons": "^5.4.0", - "@patternfly/react-log-viewer": "^5.2.0", + "@patternfly/react-log-viewer": "^5.3.0", "@patternfly/react-styles": "^5.4.0", "@patternfly/react-table": "^5.3.4", "@react-hook/resize-observer": "^2.0.1", diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index b71909eb7..00b20ad4d 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -36,13 +36,13 @@ importers: specifier: ^7.3.0 version: 7.4.0(react-dom@18.3.1(react@18.3.1))(react@18.3.1) '@patternfly/react-core': - specifier: ^5.3.4 + specifier: ^5.4.0 version: 5.4.0(react-dom@18.3.1(react@18.3.1))(react@18.3.1) '@patternfly/react-icons': specifier: ^5.4.0 version: 5.4.0(react-dom@18.3.1(react@18.3.1))(react@18.3.1) '@patternfly/react-log-viewer': - specifier: ^5.2.0 + specifier: ^5.3.0 version: 5.3.0(react-dom@18.3.1(react@18.3.1))(react@18.3.1) '@patternfly/react-styles': specifier: ^5.4.0 From 06f1e13f62e8f57c5a50adfa250891eec3700abe Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 17 Sep 2024 15:48:33 -0400 Subject: [PATCH 200/337] update test.yml --- .github/workflows/test.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index a82d0f5fe..be17743e4 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -46,7 +46,6 @@ jobs: uses: actions/setup-node@v4 with: node-version: 20.17 - cache: 'pnpm' - name: Install pnpm run: npm install -g pnpm From faf6c26deb821b086cbd2ffd68940ee0632e3f9e Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 17 Sep 2024 15:52:35 -0400 Subject: [PATCH 201/337] feat: Update test.yml to work with pnpm --- .github/workflows/test.yml | 71 +++++++++++++++----------------------- 1 file changed, 27 insertions(+), 44 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index be17743e4..82e318603 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -10,49 +10,35 @@ jobs: name: Tests (unit tests) runs-on: ubuntu-22.04 steps: - - name: Checkout - uses: actions/checkout@v4 + - uses: actions/checkout@v4 with: fetch-depth: "0" # necessary for `npm run print-version` - - name: Install Node.js - uses: actions/setup-node@v4 + - uses: pnpm/action-setup@v2 + with: + version: 8 + - uses: actions/setup-node@v4 with: node-version: 20.17 cache: 'pnpm' - - - name: Install pnpm - run: npm install -g pnpm - - - name: Install dependencies - run: pnpm install --frozen-lockfile - - - name: Unit tests - run: pnpm test - - # note to self: the sections test-public and test-local should be almost the same, except: - # - local testing needs git submodules - # - `npm run test:e2e` v.s. `npm run test:e2e:local` - # - some names should be different + - run: pnpm install --frozen-lockfile + - run: pnpm test test-public: name: Tests (public testing server) runs-on: ubuntu-22.04 steps: - - name: Checkout - uses: actions/checkout@v4 + - uses: actions/checkout@v4 with: fetch-depth: "0" # necessary for `npm run print-version` - - name: Install Node.js - uses: actions/setup-node@v4 + - uses: pnpm/action-setup@v2 + with: + version: 8 + - uses: actions/setup-node@v4 with: node-version: 20.17 - - - name: Install pnpm - run: npm install -g pnpm - - name: Install dependencies - run: pnpm install --frozen-lockfile - - name: Install Playwright Browsers - run: npx playwright install --with-deps + cache: 'pnpm' + - run: pnpm install --frozen-lockfile + - run: npx playwright install --with-deps - name: End-to-End tests env: TEST_SAFARI: yes @@ -60,7 +46,7 @@ jobs: - uses: actions/upload-artifact@v4 if: always() with: - name: playwright-report + name: playwright-report-public path: playwright-report-public/ retention-days: 30 - name: Report coverage @@ -75,28 +61,25 @@ jobs: files: coverage/lcov.info flags: e2etests-public fail_ci_if_error: true + test-local: name: Tests (local testing server) runs-on: ubuntu-22.04 steps: - - name: Checkout - uses: actions/checkout@v4 + - uses: actions/checkout@v4 with: fetch-depth: "0" # necessary for `npm run print-version` submodules: "recursive" # necessary for miniChRIS and example-dicoms - - name: Install Node.js - uses: actions/setup-node@v4 + - uses: pnpm/action-setup@v2 + with: + version: 8 + - uses: actions/setup-node@v4 with: node-version: 20.17 cache: 'pnpm' - - name: Install pnpm - run: npm install -g pnpm - - name: Install dependencies - run: pnpm install --frozen-lockfile - - name: Install Playwright Browsers - run: npx playwright install --with-deps - - name: Setup tests - run: pnpm run test:prepare + - run: pnpm install --frozen-lockfile + - run: npx playwright install --with-deps + - run: pnpm run test:prepare - name: End-to-End tests env: TEST_SAFARI: yes @@ -104,7 +87,7 @@ jobs: - uses: actions/upload-artifact@v4 if: always() with: - name: playwright-report + name: playwright-report-local path: playwright-report-local/ retention-days: 30 - name: Report coverage @@ -118,4 +101,4 @@ jobs: token: ${{ secrets.CODECOV_TOKEN }} files: coverage/lcov.info flags: e2etests-local - fail_ci_if_error: true + fail_ci_if_error: true \ No newline at end of file From 5bf9da33f3e9bc641300987c4e940c085fef757c Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 17 Sep 2024 15:54:59 -0400 Subject: [PATCH 202/337] feat: minor cleanup --- .github/workflows/test.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 82e318603..324c868ed 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -20,7 +20,7 @@ jobs: with: node-version: 20.17 cache: 'pnpm' - - run: pnpm install --frozen-lockfile + - run: pnpm install - run: pnpm test test-public: @@ -37,7 +37,7 @@ jobs: with: node-version: 20.17 cache: 'pnpm' - - run: pnpm install --frozen-lockfile + - run: pnpm install - run: npx playwright install --with-deps - name: End-to-End tests env: @@ -77,7 +77,7 @@ jobs: with: node-version: 20.17 cache: 'pnpm' - - run: pnpm install --frozen-lockfile + - run: pnpm install - run: npx playwright install --with-deps - run: pnpm run test:prepare - name: End-to-End tests From f3848d3d7ff4586c18c17ff984b553b84d11fade Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 17 Sep 2024 16:09:46 -0400 Subject: [PATCH 203/337] feat: Cleanup outdated tests --- .github/workflows/test.yml | 4 +- tests/createAccount.spec.ts | 22 --------- tests/createFeed.spec.ts | 16 ------- tests/feedops.spec.ts | 30 ------------- tests/helpers/createFeedHelper.ts | 31 ------------- tests/library.spec.ts | 75 ------------------------------- 6 files changed, 2 insertions(+), 176 deletions(-) delete mode 100644 tests/createAccount.spec.ts delete mode 100644 tests/createFeed.spec.ts delete mode 100644 tests/feedops.spec.ts delete mode 100644 tests/helpers/createFeedHelper.ts delete mode 100644 tests/library.spec.ts diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 324c868ed..1017fd851 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -46,7 +46,7 @@ jobs: - uses: actions/upload-artifact@v4 if: always() with: - name: playwright-report-public + name: playwright-report path: playwright-report-public/ retention-days: 30 - name: Report coverage @@ -87,7 +87,7 @@ jobs: - uses: actions/upload-artifact@v4 if: always() with: - name: playwright-report-local + name: playwright-report path: playwright-report-local/ retention-days: 30 - name: Report coverage diff --git a/tests/createAccount.spec.ts b/tests/createAccount.spec.ts deleted file mode 100644 index 7c6da80ab..000000000 --- a/tests/createAccount.spec.ts +++ /dev/null @@ -1,22 +0,0 @@ -import { test, expect } from "./fixtures/notLoggedIn.ts"; -import createAccountHelper from "./helpers/createAccount.ts"; -import { faker } from "@faker-js/faker"; - -test("Can create new user accounts", async ({ page, baseURL }) => { - test.slow(); - - const username = faker.internet.userName(); - const email = faker.internet.email(); - const password = "testuser1234"; - await createAccountHelper("/", page, username, email, password); - - // account options menu should appear after being logged in - await page.getByRole("button", { name: username }).click(); - // account options menu should have a "Sign out" button - await page.getByRole("menuitem", { name: "Sign out" }).click(); - await expect( - page.getByRole("button", { name: "Login" }), - "login button should reappear after signing out", - ).toBeInViewport(); - // TODO make sure user's private data is no longer there -}); diff --git a/tests/createFeed.spec.ts b/tests/createFeed.spec.ts deleted file mode 100644 index 61148ed42..000000000 --- a/tests/createFeed.spec.ts +++ /dev/null @@ -1,16 +0,0 @@ -import { test, expect } from "./fixtures/loggedIn.ts"; -import { faker } from "@faker-js/faker"; -import createFeed from "./helpers/createFeedHelper.ts"; -import getProjectFile from "./helpers/projectFile.ts"; - -const SOME_FILE = getProjectFile("package-lock.json"); - -test("Can create a feed", async ({ page }) => { - test.slow(); - await page.goto("feeds?type=private"); - const animal = faker.animal.type(); - const feedName = `A study on ${animal}`; - await createFeed(page, feedName, SOME_FILE); - await expect(page.getByText("Feed Created Successfully")).toBeVisible(); - await expect(page.locator("tbody")).toContainText(feedName); -}); diff --git a/tests/feedops.spec.ts b/tests/feedops.spec.ts deleted file mode 100644 index 3aa4e517a..000000000 --- a/tests/feedops.spec.ts +++ /dev/null @@ -1,30 +0,0 @@ -import { test, expect } from "./fixtures/loggedIn.ts"; -import { faker } from "@faker-js/faker"; -import createFeed from "./helpers/createFeedHelper"; -import getProjectFile from "./helpers/projectFile.ts"; - -const SOME_FILE = getProjectFile("package-lock.json"); - -test("Can perform feed operations", async ({ page, isMobile }) => { - test.slow(); - await page.goto("feeds?type=private"); - const animal = faker.animal.type(); - const feedName = `A study on ${animal}`; - await createFeed(page, feedName, SOME_FILE); - // Add a timeout of 5000 milliseconds to wait for the "Feed Created Successfully" message - await page.waitForSelector(':text("Feed Created Successfully")'); - await page.getByRole("button").first().click(); - // Add a timeout of 5000 milliseconds to wait for the "tbody" to contain text - await expect(page.locator("tbody")).toContainText(feedName); - const labelName = `${feedName}-checkbox`; - if (isMobile) { - await page.getByLabel("Global Navigation").click(); - } - const firstCheckbox = page.locator(`[aria-label="${labelName}"]`).first(); - await firstCheckbox.check(); - - await page.getByLabel("feed-action").nth(4).click(); - await page.getByRole("button", { name: "Confirm" }).click({ timeout: 5000 }); - await page.locator('[aria-label="Loading Feed Table"]'); - await page.locator('[aria-label="Feed Table"]'); -}); diff --git a/tests/helpers/createFeedHelper.ts b/tests/helpers/createFeedHelper.ts deleted file mode 100644 index d9f4c2287..000000000 --- a/tests/helpers/createFeedHelper.ts +++ /dev/null @@ -1,31 +0,0 @@ -import { Page } from "playwright"; -import { expect } from "../fixtures/loggedIn"; -import { faker } from "@faker-js/faker"; - -async function createFeed(page: Page, feedName: string, SOME_FILE: string) { - await page.goto("feeds?type=private"); - const animal = faker.animal.type(); - const feedNote = `The ${animal} is a very noteworthy animal.`; - - await page.getByRole("button", { name: "Create Feed" }).click(); - await page.getByPlaceholder("e.g. Tractography Study").click(); - await page.getByPlaceholder("e.g. Tractography Study").fill(feedName); - await page.getByPlaceholder("Use this field to describe").click(); - await page.getByPlaceholder("Use this field to describe").fill(feedNote); - await page.getByRole("button", { name: "Next" }).click(); - - // Check if the next button is disabled. - const nextButton = page.getByRole("button", { name: "Next" }); - await expect(nextButton).toBeDisabled(); - await page.getByText("Upload New Data").click(); - const fileChooserPromise = page.waitForEvent("filechooser"); - await page.getByText("Drag 'n' drop some files here").click(); - const fileChooser = await fileChooserPromise; - - await fileChooser.setFiles(SOME_FILE); - await nextButton.click(); - await page.getByRole("button", { name: "Next", exact: true }).click(); - await page.getByRole("button", { name: "Create Analysis" }).click(); -} - -export default createFeed; diff --git a/tests/library.spec.ts b/tests/library.spec.ts deleted file mode 100644 index b45369b62..000000000 --- a/tests/library.spec.ts +++ /dev/null @@ -1,75 +0,0 @@ -import { test, expect } from "./fixtures/loggedIn.ts"; -import getProjectFile from "./helpers/projectFile.ts"; - -test("Tests File Uploads", async ({ page }) => { - //Avoids timeouts. - test.slow(); - await page.goto("library"); - - const modalSelector = "[role='dialog']"; - - // Click on the button to trigger the modal - await page.getByRole("button", { name: /upload/i }).click(); - - // Wait for the modal to appear - await page.waitForSelector(modalSelector); - - // Get a handle to the modal element - const modalElementHandle = await page.$(modalSelector); - - // Now you can interact with the modal as needed - // Example: assert that modal content is visible - - if (modalElementHandle) { - const isModalVisible = await modalElementHandle.isVisible(); - expect(isModalVisible).toBeTruthy(); - - const fileChooserPromise = page.waitForEvent("filechooser"); - await page.getByRole("button", { name: /upload files/i }).click(); - const fileChooser = await fileChooserPromise; - - const SOME_FILE = getProjectFile("package-lock.json"); - await fileChooser.setFiles(SOME_FILE); - - await page.waitForSelector("input[name='horizontal-form-name']"); - - // Extract the file name from the file-name div - const fileName = await page.$eval( - ".file-name-text", - (element: HTMLDivElement) => element.innerText, - ); - - // Check if the file name is 'package-lock.json' - expect(fileName).toBe("package-lock.json"); - - // Correct the selector for the "Push to File Storage" button - await page - .getByRole("button", { - name: /push to file storage/i, - }) - .click(); - - const username = await page.$eval( - ".pf-v5-c-menu-toggle__text", - (element) => element.textContent, - ); - - const directoryNameValue = await page.$eval( - "input[name='horizontal-form-name']", - (element: HTMLInputElement) => element.value, - ); - const expectedURL = `/library/${username}/uploads/${directoryNameValue}`; - - // Start waiting for the progress measure to be 100% - await page.waitForFunction(() => { - const progressMeasure = document.querySelector( - ".pf-v5-c-progress__measure", - ); - return progressMeasure && progressMeasure.textContent === "100%"; - }); - - // Click the close button to close the modal - await page.click("[aria-label='Close']"); - expect(page.url()).toContain(expectedURL); - } -}); From 86e791c181f1cf82922d0e7ab6a0dc97c9d0d7c8 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Mon, 16 Sep 2024 19:28:04 -0400 Subject: [PATCH 204/337] Begin rewriting Pacs --- .env | 3 + package-lock.json | 566 ++++++++++------ package.json | 5 +- src/App.tsx | 8 +- src/api/fp/chrisapi.ts | 29 +- src/api/fp/helpers.test.ts | 4 +- .../NiivueDatasetViewer.tsx | 2 +- .../components/SettingsTab.tsx | 2 +- .../NiivueDatasetViewer/content/footer.tsx | 2 +- src/components/Pacs/app.test.tsx | 86 +++ src/components/Pacs/app.tsx | 156 +++++ .../Pacs/components/ErrorScreen.tsx | 33 + .../Pacs/components/PatientCard.tsx | 153 ----- src/components/Pacs/components/SeriesCard.tsx | 629 ------------------ .../Pacs/components/SettingsComponents.tsx | 215 ------ src/components/Pacs/components/StudyCard.tsx | 366 ---------- src/components/Pacs/components/input.test.ts | 12 + src/components/Pacs/components/input.tsx | 192 ++++++ src/components/Pacs/components/loading.tsx | 22 + .../Pacs/components/usePullStudyHook.tsx | 124 ---- src/components/Pacs/components/utils.ts | 36 - src/components/Pacs/index.tsx | 580 +--------------- src/components/Pacs/pacs-copy.css | 123 ---- src/components/Pacs/pacs.tsx | 48 ++ src/components/Pacs/pfdcmClient.tsx | 100 --- src/components/Pacs/useSettings.tsx | 79 --- src/components/Wrapper/TitleComponent.tsx | 17 +- .../NiivueDatasetViewer => }/cssUtils.ts | 0 vitest.config.ts | 11 + vitest.setup.ts | 10 + 30 files changed, 1025 insertions(+), 2588 deletions(-) create mode 100644 src/components/Pacs/app.test.tsx create mode 100644 src/components/Pacs/app.tsx create mode 100644 src/components/Pacs/components/ErrorScreen.tsx delete mode 100644 src/components/Pacs/components/PatientCard.tsx delete mode 100644 src/components/Pacs/components/SeriesCard.tsx delete mode 100644 src/components/Pacs/components/SettingsComponents.tsx delete mode 100644 src/components/Pacs/components/StudyCard.tsx create mode 100644 src/components/Pacs/components/input.test.ts create mode 100644 src/components/Pacs/components/input.tsx create mode 100644 src/components/Pacs/components/loading.tsx delete mode 100644 src/components/Pacs/components/usePullStudyHook.tsx delete mode 100644 src/components/Pacs/components/utils.ts delete mode 100644 src/components/Pacs/pacs-copy.css create mode 100644 src/components/Pacs/pacs.tsx delete mode 100644 src/components/Pacs/pfdcmClient.tsx delete mode 100644 src/components/Pacs/useSettings.tsx rename src/{components/NiivueDatasetViewer => }/cssUtils.ts (100%) create mode 100644 vitest.setup.ts diff --git a/.env b/.env index 684c225fb..8d1ac18f1 100644 --- a/.env +++ b/.env @@ -18,5 +18,8 @@ VITE_PFDCM_CUBEKEY="local" VITE_PFDCM_SWIFTKEY="local" VITE_SOURCEMAP='false' +# URI for support requests +VITE_SUPPORT_URL='mailto:dev@babyMRI.org' + # Set URL for the store if you want to see it in the sidebar VITE_CHRIS_STORE_URL= "http://rc-live.tch.harvard.edu:32222/api/v1/" diff --git a/package-lock.json b/package-lock.json index 5db811a7b..725c15f65 100644 --- a/package-lock.json +++ b/package-lock.json @@ -75,6 +75,9 @@ "@biomejs/biome": "1.8.3", "@faker-js/faker": "^8.4.0", "@playwright/test": "^1.41.2", + "@testing-library/dom": "^10.4.0", + "@testing-library/jest-dom": "^6.5.0", + "@testing-library/react": "^16.0.1", "@types/d3-hierarchy": "^1.1.7", "@types/d3-selection": "^1.4.3", "@types/lodash": "^4.14.202", @@ -94,10 +97,17 @@ "rollup-plugin-node-builtins": "^2.1.2", "vite": "^5.3.2", "vite-plugin-istanbul": "^6.0.2", - "vitest": "^2.0.5", + "vitest": "^2.1.1", "vitest-websocket-mock": "^0.4.0" } }, + "node_modules/@adobe/css-tools": { + "version": "4.4.0", + "resolved": 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"^4.3.5", - "execa": "^8.0.1", - "magic-string": "^0.30.10", + "debug": "^4.3.6", + "magic-string": "^0.30.11", "pathe": "^1.1.2", "std-env": "^3.7.0", - "tinybench": "^2.8.0", + "tinybench": "^2.9.0", + "tinyexec": "^0.3.0", "tinypool": "^1.0.0", "tinyrainbow": "^1.2.0", "vite": "^5.0.0", - "vite-node": "2.0.5", + "vite-node": "2.1.1", "why-is-node-running": "^2.3.0" }, "bin": { @@ -9860,8 +10044,8 @@ "peerDependencies": { "@edge-runtime/vm": "*", "@types/node": "^18.0.0 || >=20.0.0", - "@vitest/browser": "2.0.5", - "@vitest/ui": "2.0.5", + "@vitest/browser": "2.1.1", + "@vitest/ui": "2.1.1", "happy-dom": "*", "jsdom": "*" }, diff --git a/package.json b/package.json index 87c6be441..fa6df4e19 100644 --- a/package.json +++ b/package.json @@ -105,6 +105,9 @@ "@biomejs/biome": "1.8.3", "@faker-js/faker": "^8.4.0", "@playwright/test": "^1.41.2", + "@testing-library/dom": "^10.4.0", + "@testing-library/jest-dom": "^6.5.0", + "@testing-library/react": "^16.0.1", "@types/d3-hierarchy": "^1.1.7", "@types/d3-selection": "^1.4.3", "@types/lodash": "^4.14.202", @@ -124,7 +127,7 @@ "rollup-plugin-node-builtins": "^2.1.2", "vite": "^5.3.2", "vite-plugin-istanbul": "^6.0.2", - "vitest": "^2.0.5", + "vitest": "^2.1.1", "vitest-websocket-mock": "^0.4.0" }, "type": "module" diff --git a/src/App.tsx b/src/App.tsx index 0f98b3133..64dfe0630 100644 --- a/src/App.tsx +++ b/src/App.tsx @@ -1,6 +1,6 @@ import "@patternfly/react-core/dist/styles/base.css"; import { QueryClient, QueryClientProvider } from "@tanstack/react-query"; -import { ConfigProvider, theme } from "antd"; +import { ConfigProvider, App as AntdApp, theme } from "antd"; import { useContext } from "react"; import { CookiesProvider } from "react-cookie"; import { Provider } from "react-redux"; @@ -58,8 +58,10 @@ function App(props: AllProps) { : theme.defaultAlgorithm, }} > - <Cart /> - <Routes /> + <AntdApp> + <Cart /> + <Routes /> + </AntdApp> </ConfigProvider> </QueryClientProvider> </BrowserRouter> diff --git a/src/api/fp/chrisapi.ts b/src/api/fp/chrisapi.ts index 21c7fc1df..b860d1651 100644 --- a/src/api/fp/chrisapi.ts +++ b/src/api/fp/chrisapi.ts @@ -124,7 +124,7 @@ class FpClient { } /** - * Create a WebSockets connection to the LONK-WS endpoint. + * Connect a WebSocket to the LONK-WS endpoint. * * https://chrisproject.org/docs/oxidicom/lonk-ws */ @@ -136,10 +136,31 @@ class FpClient { }: LonkHandlers & { timeout?: number }): TE.TaskEither<Error, LonkClient> { return pipe( this.createDownloadToken(timeout), - TE.map((downloadToken) => { + TE.flatMap((downloadToken) => { const url = getWebsocketUrl(downloadToken); + let callback: ((c: E.Either<Error, LonkClient>) => void) | null = null; + let promise: Promise<E.Either<Error, LonkClient>> = new Promise( + (resolve) => (callback = resolve), + ); const ws = new WebSocket(url); - return new LonkClient({ ws, onDone, onProgress, onError }); + ws.onopen = () => + callback && + callback( + E.right(new LonkClient({ ws, onDone, onProgress, onError })), + ); + ws.onerror = (_ev) => + callback && + callback( + E.left( + new Error( + `There was an error connecting to the WebSocket at ${url}`, + ), + ), + ); + ws.onclose = () => + callback && + callback(E.left(new Error(`CUBE unexpectedly closed the WebSocket`))); + return () => promise; }), ); } @@ -149,7 +170,7 @@ function getWebsocketUrl(downloadTokenResponse: DownloadToken): string { const token = downloadTokenResponse.data.token; return downloadTokenResponse.url .replace(/^http(s?):\/\//, (_match, s) => `ws${s}://`) - .replace(/v1\/downloadtokens\/\d+\//, `v1/pacs/progress/?token=${token}`); + .replace(/v1\/downloadtokens\/\d+\//, `v1/pacs/ws/?token=${token}`); } function notNull<T>(x: T | null): T { diff --git a/src/api/fp/helpers.test.ts b/src/api/fp/helpers.test.ts index c3f662c0a..cc7181e96 100644 --- a/src/api/fp/helpers.test.ts +++ b/src/api/fp/helpers.test.ts @@ -16,7 +16,7 @@ test.each([ owner_username: "chris", }, }, - "ws://example.com/api/v1/pacs/progress/?token=nota.real.jwttoken", + "ws://example.com/api/v1/pacs/ws/?token=nota.real.jwttoken", ], [ { @@ -32,7 +32,7 @@ test.each([ owner_username: "chris", }, }, - "wss://example.com/api/v1/pacs/progress/?token=stillnota.real.jwttoken", + "wss://example.com/api/v1/pacs/ws/?token=stillnota.real.jwttoken", ], ])("getWebsocketUrl(%o, %s) -> %s", (downloadTokenResponse, expected) => { // @ts-ignore diff --git a/src/components/NiivueDatasetViewer/NiivueDatasetViewer.tsx b/src/components/NiivueDatasetViewer/NiivueDatasetViewer.tsx index 9fba2fbb2..483b65fc2 100644 --- a/src/components/NiivueDatasetViewer/NiivueDatasetViewer.tsx +++ b/src/components/NiivueDatasetViewer/NiivueDatasetViewer.tsx @@ -17,7 +17,7 @@ import { getDataset, getPreClient, } from "./client"; -import { flexRowSpaceBetween, hideOnMobile } from "./cssUtils"; +import { flexRowSpaceBetween, hideOnMobile } from "../../cssUtils.ts"; import { FpClient } from "../../api/fp/chrisapi"; import { pipe } from "fp-ts/function"; import * as TE from "fp-ts/TaskEither"; diff --git a/src/components/NiivueDatasetViewer/components/SettingsTab.tsx b/src/components/NiivueDatasetViewer/components/SettingsTab.tsx index eea783d71..65c529909 100644 --- a/src/components/NiivueDatasetViewer/components/SettingsTab.tsx +++ b/src/components/NiivueDatasetViewer/components/SettingsTab.tsx @@ -11,7 +11,7 @@ import { Switch, } from "@patternfly/react-core"; import RadiologcalConventionToggle from "./RadiologcalConventionToggle"; -import { hideOnDesktop } from "../cssUtils"; +import { hideOnDesktop } from "../../../cssUtils"; import Spacing from "@patternfly/react-styles/css/utilities/Spacing/spacing"; import { css } from "@patternfly/react-styles"; import SliceTypeButton from "./SliceTypeButton"; diff --git a/src/components/NiivueDatasetViewer/content/footer.tsx b/src/components/NiivueDatasetViewer/content/footer.tsx index 3cfa11d5d..355fc295d 100644 --- a/src/components/NiivueDatasetViewer/content/footer.tsx +++ b/src/components/NiivueDatasetViewer/content/footer.tsx @@ -1,4 +1,4 @@ -import { hideOnDesktop, hideOnMobileInline } from "../cssUtils.ts"; +import { hideOnDesktop, hideOnMobileInline } from "../../../cssUtils.ts"; import { Chip, Popover, TextContent } from "@patternfly/react-core"; import BUILD_VERSION from "../../../getBuildVersion.ts"; import { css } from "@patternfly/react-styles"; diff --git a/src/components/Pacs/app.test.tsx b/src/components/Pacs/app.test.tsx new file mode 100644 index 000000000..7ace09342 --- /dev/null +++ b/src/components/Pacs/app.test.tsx @@ -0,0 +1,86 @@ +import { cleanup, render, screen } from "@testing-library/react"; +import { expect, test, vi } from "vitest"; +import PacsQRApp from "./app.tsx"; +import * as TE from "fp-ts/TaskEither"; +import { Configuration as PfdcmConfig, PfdcmClient } from "../../api/pfdcm"; +import ChrisClient, { DownloadToken } from "@fnndsc/chrisapi"; +import WS from "vitest-websocket-mock"; + +test("PACS Q/R page can bootstrap", async () => { + const pfdcmClient = createPfdcmMock(TE.right(["BCH", "MGH", "BWH"])); + const [chrisClient, ws] = createWorkingMockPacsWs(32584); + + const getClientMocks = { + getChrisClient: vi.fn(() => chrisClient), + getPfdcmClient: vi.fn(() => pfdcmClient), + }; + render(<PacsQRApp {...getClientMocks} />); + + await ws.connected; + + await expect + .poll(() => screen.getByPlaceholderText("Search for DICOM studies by MRN")) + .toBeInTheDocument(); + + // First PACS service (besides 'default') should be automatically selected. + expect(screen.getByTitle("PACS service")).toHaveTextContent("BCH"); + + // component should close WebSocket connection when unmounted + cleanup(); + await ws.closed; +}); + +test("Shows error screen if PFDCM is offline", async () => { + const pfdcmClient = createPfdcmMock( + TE.left(new Error("I am an expected error")), + ); + const [chrisClient, _ws] = createWorkingMockPacsWs(32583); + + const getClientMocks = { + getChrisClient: vi.fn(() => chrisClient), + getPfdcmClient: vi.fn(() => pfdcmClient), + }; + render(<PacsQRApp {...getClientMocks} />); + + await expect + .poll(() => screen.getByText("I am an expected error")) + .toBeInTheDocument(); + expect( + screen.getByText(/PACS Q\/R application is currently unavailable/), + ).toBeInTheDocument(); +}); + +function createWorkingMockPacsWs( + port: number, + id: number = 55, +): [ChrisClient, WS] { + const fakeChrisHost = `localhost:${port}`; + const fakeChrisUrl = `http://${fakeChrisHost}/api/v1/`; + const fakeChrisAuth = { token: "12345" }; + vi.spyOn(DownloadToken.prototype, "data", "get").mockReturnValue({ + token: "abcdefgnotarealjwt", + }); + const fakeDownloadToken = new DownloadToken( + `${fakeChrisUrl}downloadtokens/${id}/`, + fakeChrisAuth, + ); + + const client = new ChrisClient(fakeChrisUrl, fakeChrisAuth); + client.createDownloadToken = vi.fn(async () => fakeDownloadToken); + + const ws = new WS( + `ws://${fakeChrisHost}/api/v1/pacs/ws/?token=abcdefgnotarealjwt`, + { jsonProtocol: true }, + ); + + return [client, ws]; +} + +function createPfdcmMock( + servicesReturn: ReturnType<PfdcmClient["getPacsServices"]>, +) { + const pfdcmConfig = new PfdcmConfig({ basePath: "https://example.com" }); + const pfdcmClient = new PfdcmClient(pfdcmConfig); + pfdcmClient.getPacsServices = vi.fn(() => servicesReturn); + return pfdcmClient; +} diff --git a/src/components/Pacs/app.tsx b/src/components/Pacs/app.tsx new file mode 100644 index 000000000..bb6fceeaa --- /dev/null +++ b/src/components/Pacs/app.tsx @@ -0,0 +1,156 @@ +/** + * The primary PACS Q/R UI code is found in ./pacs.tsx. This file defines a + * component which wraps the default export from ./pacs.tsx, bootstrapping + * the client objects it needs e.g. + * + * 1. Making an initial connection to PFDCM + * 2. Connecting to the PACS receive progress WebSocket, `api/v1/pacs/ws/` + * + * During bootstrapping, a loading screen is shown. + * If bootstrapping fails, an error screen is shown. + */ + +import React from "react"; +import { PfdcmClient } from "../../api/pfdcm"; +import Client from "@fnndsc/chrisapi"; +import LonkClient from "../../api/lonk"; +import { App, Typography } from "antd"; +import FpClient from "../../api/fp/chrisapi.ts"; +import * as TE from "fp-ts/TaskEither"; +import { pipe } from "fp-ts/function"; +import { PageSection } from "@patternfly/react-core"; +import PacsQR from "./pacs.tsx"; +import PacsLoadingScreen from "./components/loading.tsx"; +import ErrorScreen from "./components/ErrorScreen.tsx"; + +/** + * A title and paragraph. + */ +const ErrorNotificationBody: React.FC< + React.PropsWithChildren<{ title: string }> +> = ({ title, children }) => ( + <Typography> + <Typography.Title>{title}</Typography.Title> + <Typography.Paragraph>{children}</Typography.Paragraph> + </Typography> +); + +/** + * ChRIS_ui PACS Query and Retrieve application. + */ +const PacsQRApp: React.FC<{ + getPfdcmClient: () => PfdcmClient; + getChrisClient: () => Client; +}> = ({ getChrisClient, getPfdcmClient }) => { + const [services, setServices] = React.useState<ReadonlyArray<string>>([]); + const [service, setService] = React.useState<string | null>(null); + const [lonkClient, setLonkClient] = React.useState<LonkClient | null>(null); + const [error, setError] = React.useState<string | null>(null); + + const { message, notification, modal } = App.useApp(); + + const pushError = React.useMemo(() => { + return (title: string) => { + return (e: Error) => { + notification.error({ + message: ( + <ErrorNotificationBody title={title}> + {e.message} + </ErrorNotificationBody> + ), + }); + }; + }; + }, [notification]); + + const pfdcmClient = React.useMemo(getPfdcmClient, [getPfdcmClient]); + const chrisClient = React.useMemo(getChrisClient, [getChrisClient]); + + const fpClient = React.useMemo(() => { + return new FpClient(chrisClient); + }, [chrisClient]); + + /** + * Show an error screen with the error's message. + * + * Used to handle errors during necessary bootstrapping. + */ + const failWithError = TE.mapLeft((e: Error) => setError(e.message)); + + React.useEffect(() => { + document.title = "ChRIS PACS"; + }, []); + + React.useEffect(() => { + const getServicesPipeline = pipe( + pfdcmClient.getPacsServices(), + failWithError, + TE.map((services) => { + setServices(services); + const defaultService = getDefaultPacsService(services); + defaultService && setService(defaultService); + }), + ); + getServicesPipeline(); + }, [pfdcmClient, pushError]); + + React.useEffect(() => { + let lonkClientRef: LonkClient | null = null; + + const onDone = () => {}; // TODO + const onProgress = () => {}; // TODO + const onError = () => {}; // TODO + const connectWsPipeline = pipe( + fpClient.connectPacsNotifications({ onDone, onProgress, onError }), + failWithError, + TE.map((client) => (lonkClientRef = client)), + TE.map(setLonkClient), + ); + connectWsPipeline(); + + return () => lonkClientRef?.close(); + }, [fpClient, pushError]); + + return ( + <PageSection> + {error !== null ? ( + <ErrorScreen>{error}</ErrorScreen> + ) : services && service && lonkClient ? ( + <PacsQR + lonkClient={lonkClient} + fpClient={fpClient} + services={services} + service={service} + setService={setService} + pushError={pushError} + /> + ) : ( + <PacsLoadingScreen /> + )} + </PageSection> + ); +}; + +/** + * Selects the default PACS service (which is usually not the PACS service literally called "default"). + * + * 1. Selects the hard-coded "PACSDCM" + * 2. Attempts to select the first value which is not "default" (a useless, legacy pfdcm behavior) + * 3. Selects the first value + */ +function getDefaultPacsService(services: ReadonlyArray<string>): string | null { + if (services.includes("PACSDCM")) { + return "PACSDCM"; + } + for (const service of services) { + if (service !== "default") { + return service; + } + } + if (services) { + return services[0]; + } + return null; +} + +export default PacsQRApp; diff --git a/src/components/Pacs/components/ErrorScreen.tsx b/src/components/Pacs/components/ErrorScreen.tsx new file mode 100644 index 000000000..c69d06171 --- /dev/null +++ b/src/components/Pacs/components/ErrorScreen.tsx @@ -0,0 +1,33 @@ +import React from "react"; +import { + EmptyState, + EmptyStateBody, + EmptyStateHeader, + EmptyStateIcon, + Text, + TextContent, + TextVariants, +} from "@patternfly/react-core"; +import { ExclamationCircleIcon } from "../../Icons"; + +const ErrorScreen: React.FC<React.PropsWithChildren<{}>> = ({ children }) => ( + <EmptyState> + <EmptyStateHeader + titleText="PACS Connection Error" + headingLevel="h4" + icon={<EmptyStateIcon icon={ExclamationCircleIcon} />} + /> + <EmptyStateBody> + <TextContent> + <Text component={TextVariants.pre}>{children}</Text> + <Text component={TextVariants.p}> + The <em>ChRIS</em> PACS Q/R application is currently unavailable. + Please contact your <em>ChRIS</em> admin by clicking{" "} + <a href={import.meta.env.VITE_SUPPORT_URL}>here</a>. + </Text> + </TextContent> + </EmptyStateBody> + </EmptyState> +); + +export default ErrorScreen; diff --git a/src/components/Pacs/components/PatientCard.tsx b/src/components/Pacs/components/PatientCard.tsx deleted file mode 100644 index 66e9b4855..000000000 --- a/src/components/Pacs/components/PatientCard.tsx +++ /dev/null @@ -1,153 +0,0 @@ -import { - Card, - CardHeader, - Grid, - GridItem, - Skeleton, - Tooltip, -} from "@patternfly/react-core"; -import { notification } from "../../Antd"; -import { format, parse } from "date-fns"; -import { useContext, useEffect, useState } from "react"; -import { PacsQueryContext } from "../context"; -import useSettings from "../useSettings"; -import { CardHeaderComponent } from "./SettingsComponents"; -import StudyCard from "./StudyCard"; - -function getPatientDetails(patientDetails: any) { - return { - PatientName: patientDetails.PatientName.value, - PatientID: patientDetails.PatientID.value, - PatientBirthDate: patientDetails.PatientBirthDate.value, - PatientSex: patientDetails.PatientSex.value, - }; -} - -const PatientCard = ({ queryResult }: { queryResult: any }) => { - const [api, contextHolder] = notification.useNotification(); - const { data, isLoading, error, isError } = useSettings(); - const { state } = useContext(PacsQueryContext); - const patient = queryResult[0]; - const patientDetails = getPatientDetails(patient); - const [isPatientExpanded, setIsPatientExpanded] = useState( - state.shouldDefaultExpanded || false, - ); - const { PatientID, PatientName, PatientBirthDate, PatientSex } = - patientDetails; - - useEffect(() => { - if (isError) { - api.error({ - message: error.message, - description: "Failed to load user preferences", - }); - } - }, [isError]); - - const parsedDate = parse(PatientBirthDate, "yyyyMMdd", new Date()); - - const formattedDate = Number.isNaN( - parsedDate.getTime(), - ) /* Check if parsedDate is a valid date */ - ? PatientBirthDate - : format(parsedDate, "MMMM d, yyyy"); - - const LatestDate = (dateStrings: string[]) => { - let latestStudy = parse(dateStrings[0], "yyyyMMdd", new Date()); - - for (const dateString of dateStrings) { - const currentDate = parse(dateString, "yyyyMMdd", new Date()); - - if (currentDate > latestStudy) { - latestStudy = currentDate; - } - } - - return latestStudy; - }; - - const userPreferences = data?.patient; - const userPreferencesArray = userPreferences && Object.keys(userPreferences); - - return ( - <> - <Card - isFlat={true} - isFullHeight={true} - isCompact={true} - isRounded={true} - isExpanded={isPatientExpanded} - > - {contextHolder} - <CardHeader - actions={{ - actions: <CardHeaderComponent resource={patient} type="patient" />, - }} - onExpand={() => setIsPatientExpanded(!isPatientExpanded)} - > - <Grid hasGutter style={{ width: "100%" }}> - {isLoading ? ( - <GridItem lg={4} md={4} sm={12}> - <Skeleton - width="100%" - height="100%" - screenreaderText="Loading contents" - /> - </GridItem> - ) : !isError && - userPreferences && - userPreferencesArray && - userPreferencesArray.length > 0 ? ( - userPreferencesArray.map((key: string) => ( - <GridItem key={key} lg={4} md={4} sm={12}> - <div>{key}</div> - <Tooltip content={patient[key] ? patient[key].value : "N/A"}> - <div className="hide-content"> - {patient[key] ? patient[key].value : "N/A"} - </div> - </Tooltip> - </GridItem> - )) - ) : ( - <> - <GridItem lg={4} md={4} sm={12}> - <div> - Patient Name: {PatientName.split("^").reverse().join(" ")} - </div> - <div>Patient MRN: {PatientID}</div> - </GridItem> - <GridItem lg={4} md={4} sm={12}> - <div>Patient Sex: {PatientSex}</div> - <div>Patient Birth Date: {formattedDate}</div> - </GridItem> - - <GridItem lg={4} md={4} sm={12} className="last-item-align"> - <div> - {queryResult.length}{" "} - {queryResult.length === 1 ? "study" : "studies"} - </div> - <div> - Latest Study Date:{" "} - {LatestDate( - queryResult.map((s: any) => s.StudyDate.value), - ).toDateString()} - </div> - </GridItem> - </> - )} - </Grid> - </CardHeader> - </Card> - {isPatientExpanded && - queryResult.map((result: any) => { - return ( - <div className="patient-studies" key={result.uid.value}> - <StudyCard study={result} /> - </div> - ); - })} - </> - ); -}; - -export default PatientCard; diff --git a/src/components/Pacs/components/SeriesCard.tsx b/src/components/Pacs/components/SeriesCard.tsx deleted file mode 100644 index 7e5d72bab..000000000 --- a/src/components/Pacs/components/SeriesCard.tsx +++ /dev/null @@ -1,629 +0,0 @@ -import type { PACSFile } from "@fnndsc/chrisapi"; -import { - Badge, - Button, - Card, - CardBody, - CardHeader, - HelperText, - HelperTextItem, - Modal, - ModalVariant, - Progress, - ProgressMeasureLocation, - ProgressSize, - ProgressVariant, - Skeleton, - Tooltip, - pluralize, -} from "@patternfly/react-core"; -import { useMutation, useQuery } from "@tanstack/react-query"; -import { Alert } from "../../Antd"; -import axios from "axios"; -import PQueue from "p-queue"; -import { useContext, useEffect, useState } from "react"; -import { useNavigate } from "react-router"; -import ChrisAPIClient from "../../../api/chrisapiclient"; -import { MainRouterContext } from "../../../routes"; -import { DotsIndicator } from "../../Common"; -import { - CodeBranchIcon, - DownloadIcon, - LibraryIcon, - PreviewIcon, -} from "../../Icons"; -import FileDetailView from "../../Preview/FileDetailView"; -import { PacsQueryContext, Types } from "../context"; -import PFDCMClient, { type DataFetchQuery } from "../pfdcmClient"; -import useSettings from "../useSettings"; -import { CardHeaderComponent } from "./SettingsComponents"; - -async function getPacsFile(file: PACSFile["data"]) { - const { id } = file; - const client = ChrisAPIClient.getClient(); - try { - const pacs_file = await client.getPACSFile(id); - return pacs_file; - } catch (e) { - if (e instanceof Error) { - throw new Error(e.message); - } - } -} - -async function getTestData( - pacsIdentifier: string, - pullQuery: DataFetchQuery, - protocolName?: string, - offset?: number, -) { - const cubeClient = ChrisAPIClient.getClient(); - try { - let url = `${ - import.meta.env.VITE_CHRIS_UI_URL - }pacsfiles/search/?pacs_identifier=${pacsIdentifier}&StudyInstanceUID=${ - pullQuery.StudyInstanceUID - }&SeriesInstanceUID=${pullQuery.SeriesInstanceUID}`; - - if (protocolName) { - url += `&ProtocolName=${protocolName}`; - } - if (offset) { - url += `&offset=${offset}`; - } - - const response = await axios.get(url, { - headers: { - Authorization: `Token ${cubeClient.auth.token}`, - }, - }); - - return response.data; - } catch (error) { - if (axios.isAxiosError(error)) { - if (error.response) { - throw new Error( - `Error: ${error.response.status} - ${error.response.data}`, - ); - } - if (error.request) { - throw new Error("Error: No response received from server."); - } - // Something else happened while setting up the request - - throw new Error(`Error: ${error.message}`); - } - - throw new Error("An unexpected error occurred."); - } -} - -function getLatestPACSFile(pacsFiles: PACSFile["data"][]) { - return pacsFiles.reduce((latestFile, currentFile) => { - const latestDate = new Date(latestFile.creation_date); - const currentDate = new Date(currentFile.creation_date); - - return currentDate > latestDate ? currentFile : latestFile; - }); -} - -/** - * The browser places a limit on the number of concurrent connections to the same domain, which can result in requests being blocked if too many are fired simultaneously. - * To manage this, we implement a queue system to control the concurrency of your async requests. - */ - -const queue = new PQueue({ concurrency: 10 }); // Set concurrency limit here - -const SeriesCardCopy = ({ series }: { series: any }) => { - const navigate = useNavigate(); - const { state, dispatch } = useContext(PacsQueryContext); - // Load user Preference Data - const { - data: userPreferenceData, - isLoading: userDataLoading, - isError: userDataError, - } = useSettings(); - const userPreferences = userPreferenceData?.series; - const userPreferencesArray = userPreferences && Object.keys(userPreferences); - - const createFeed = useContext(MainRouterContext).actions.createFeedWithData; - const { selectedPacsService, pullStudy, preview } = state; - const client = new PFDCMClient(); - const { - SeriesInstanceUID, - StudyInstanceUID, - NumberOfSeriesRelatedInstances, - AccessionNumber, - } = series; - const seriesInstances = +NumberOfSeriesRelatedInstances.value; - const studyInstanceUID = StudyInstanceUID.value; - const seriesInstanceUID = SeriesInstanceUID.value; - const accessionNumber = AccessionNumber.value; - - // disable the card completely in this case - const isDisabled = seriesInstances === 0; - // This flag controls the start/stop for polling cube for files and display progress indicators - const [isFetching, setIsFetching] = useState(false); - const [openSeriesPreview, setOpenSeriesPreview] = useState(false); - const [isPreviewFileAvailable, setIsPreviewFileAvailable] = useState(false); - const [filePreviewForViewer, setFilePreviewForViewer] = - useState<PACSFile | null>(null); - const [pacsFileError, setPacsFileError] = useState(""); - - const pullQuery: DataFetchQuery = { - StudyInstanceUID: studyInstanceUID, - SeriesInstanceUID: seriesInstanceUID, - }; - - // Handle Retrieve Request - const handleRetrieveMutation = useMutation({ - mutationFn: async () => { - try { - await client.findRetrieve(selectedPacsService, pullQuery); - setIsFetching(true); - } catch (e) { - // Don't poll if the request fails - // biome-ignore lint/complexity/noUselessCatch: <explanation> - throw e; - } - }, - }); - - const { - isPending: retrieveLoading, - isError: retrieveFetchError, - error: retrieveErrorMessage, - } = handleRetrieveMutation; - - // Polling cube files after a successful retrieve request from pfdcm; - - async function fetchCubeFiles() { - try { - if (isDisabled) { - // Cancel polling for files that have zero number of series instances - setIsFetching(false); - return { - fileToPreview: null, - totalCount: 0, - }; - } - - const middleValue = Math.floor(seriesInstances / 2); - - // Perform these three requests in parallel - const [response, seriesRelatedInstance, pushCountInstance] = - await Promise.all([ - queue.add(() => - getTestData( - selectedPacsService, - pullQuery, - "", - isPreviewFileAvailable ? middleValue : 0, - ), - ), - queue.add(() => - getTestData( - "org.fnndsc.oxidicom", - pullQuery, - "NumberOfSeriesRelatedInstances", - ), - ), - queue.add(() => - getTestData( - "org.fnndsc.oxidicom", - pullQuery, - "OxidicomAttemptedPushCount", - ), - ), - ]); - - // Process the response - const fileItems = response.results; - let fileToPreview: PACSFile | null = null; - if (fileItems.length > 0) { - fileToPreview = fileItems[0]; - } - - const totalFilesCount = response.count; - - if (totalFilesCount >= middleValue) { - // Pick the middle image of the stack for preview. Set to true if that file is available - setIsPreviewFileAvailable(true); - } - - // Get the series related instance in cube - const seriesRelatedInstanceList = seriesRelatedInstance.results; - const pushCountInstanceList = pushCountInstance.results; - - if (seriesRelatedInstanceList.length > 0) { - const seriesCountLatest = getLatestPACSFile(seriesRelatedInstanceList); - const seriesCount = +seriesCountLatest.SeriesDescription; - if (seriesCount !== seriesInstances) { - throw new Error( - "The number of series related instances in cube does not match the number in pfdcm.", - ); - } - } - - let pushCount = 0; - if (pushCountInstanceList.length > 0) { - const pushCountLatest = getLatestPACSFile(pushCountInstanceList); - pushCount = +pushCountLatest.SeriesDescription; - - if (pushCount > 0 && pushCount === totalFilesCount && isFetching) { - // This means oxidicom is done pushing as the push count file is available - // Cancel polling - setIsFetching(false); - } - } - - // Setting the study instance tracker if pull study is clicked - if (pullStudy?.[accessionNumber]) { - dispatch({ - type: Types.SET_STUDY_PULL_TRACKER, - payload: { - seriesInstanceUID: SeriesInstanceUID.value, - studyInstanceUID: accessionNumber, - currentProgress: !!( - seriesInstances === 0 || totalFilesCount === pushCount - ), - }, - }); - } - - return { - fileToPreview, - totalFilesCount, - }; - } catch (error) { - setIsFetching(false); - throw error; - } - } - - const { - data, - isPending: filesLoading, - isError: filesError, - error: filesErrorMessage, - } = useQuery({ - queryKey: [SeriesInstanceUID.value, StudyInstanceUID.value], - queryFn: fetchCubeFiles, - refetchInterval: () => { - // Only fetch after a successfull response from pfdcm - // Decrease polling frequency to avoid overwhelming cube with network requests - if (isFetching) return 1500; - return false; - }, - refetchOnMount: true, - }); - - // Retrieve this series if the pull study is clicked and the series is not already being retrieved. - useEffect(() => { - if (pullStudy[accessionNumber] && !isFetching) { - setIsFetching(true); - } - }, [pullStudy[accessionNumber]]); - - // Start polling from where the user left off in case the user refreshed the screen. - useEffect(() => { - if ( - data && - data.totalFilesCount > 0 && - data.totalFilesCount !== seriesInstances && - !isFetching - ) { - setIsFetching(true); - } - }, [data]); - - useEffect(() => { - // This is the preview all mode clicked on the study card - - async function fetchPacsFile() { - try { - const file = await getPacsFile(data?.fileToPreview); - - if (file) { - setFilePreviewForViewer(file); - } - } catch (e) { - //handle error - if (e instanceof Error) { - setPacsFileError(e.message); - } - } - } - - preview && data?.fileToPreview && fetchPacsFile(); - }, [preview]); - - // Error and loading state indicators for retrieving from pfdcm and polling cube for files. - const isResourceBeingFetched = filesLoading || retrieveLoading; - const resourceErrorFound = filesError || retrieveFetchError; - const errorMessages = filesErrorMessage - ? filesErrorMessage.message - : retrieveErrorMessage - ? retrieveErrorMessage.message - : ""; - - const helperText = ( - <HelperText> - <HelperTextItem variant="error">{errorMessages}</HelperTextItem> - </HelperText> - ); - - // This is opened when the 'preview' button is clicked - const largeFilePreview = filePreviewForViewer && ( - <Modal - variant={ModalVariant.large} - title="Preview" - aria-label="viewer" - isOpen={openSeriesPreview} - onClose={() => setOpenSeriesPreview(false)} - > - <FileDetailView - preview="large" - selectedFile={filePreviewForViewer as PACSFile} - /> - </Modal> - ); - - const filePreviewButton = ( - <div - style={{ - display: "flex", - marginRight: "0.5em", - marginTop: "1em", - }} - > - <Tooltip content="Create Feed"> - <Button - style={{ marginRight: "0.25em" }} - size="sm" - icon={<CodeBranchIcon />} - onClick={async () => { - if (data?.fileToPreview) { - try { - const file = await getPacsFile(data?.fileToPreview); - if (file) { - const cubeSeriesPath = file.data.fname - .split("/") - .slice(0, -1) - .join("/"); - createFeed([cubeSeriesPath]); - } - } catch (e) { - if (e instanceof Error) { - setPacsFileError(e.message); - } - } - } - }} - variant="tertiary" - /> - </Tooltip> - - <Tooltip content="See a Preview"> - <Button - style={{ marginRight: "0.25em" }} - size="sm" - icon={<PreviewIcon />} - onClick={async () => { - try { - const file = await getPacsFile(data?.fileToPreview); - if (file) { - setFilePreviewForViewer(file); - setOpenSeriesPreview(true); - } - } catch (e) { - if (e instanceof Error) { - setPacsFileError(e.message); - } - } - }} - variant="tertiary" - /> - </Tooltip> - - <Tooltip content="Review the dataset"> - <Button - size="sm" - icon={<LibraryIcon />} - variant="tertiary" - onClick={async () => { - if (data?.fileToPreview) { - try { - const file = await getPacsFile(data.fileToPreview); - if (file) { - const pathSplit = file.data.fname.split("/"); - const url = pathSplit - .slice(0, pathSplit.length - 1) - .join("/"); - navigate(`/library/${url}`); - } - } catch (e) { - // Handle Error - if (e instanceof Error) { - setPacsFileError(e.message); - } - } - } - }} - /> - </Tooltip> - </div> - ); - - const filePreviewLayout = ( - <CardBody style={{ position: "relative", height: "400px" }}> - <FileDetailView - preview="large" - selectedFile={filePreviewForViewer as PACSFile} - /> - <div className="series-actions"> - <div className="action-button-container"> - <span - style={{ - marginBottom: "1px", - }} - > - {series.SeriesDescription.value} - </span> - {filePreviewButton} - </div> - </div> - </CardBody> - ); - - const retrieveButton = ( - <Button - variant="tertiary" - icon={<DownloadIcon />} - size="sm" - onClick={() => { - handleRetrieveMutation.mutate(); - }} - // Only when the number of series related instances in a series is 0 - isDisabled={isDisabled} - /> - ); - - const rowLayout = ( - <CardHeader - actions={{ - actions: <CardHeaderComponent resource={series} type="series" />, - }} - className="flex-series-container" - > - {userDataLoading ? ( - <div className="flex-series-item"> - <Skeleton width="100%" height="100%" /> - </div> - ) : !userDataError && - userPreferences && - userPreferencesArray && - userPreferencesArray.length > 0 ? ( - userPreferencesArray.map((key: string) => ( - <div key={key} className="flex-series-item"> - <div className="study-detail-title hide-content"> - <span style={{ marginRight: "0.5em" }}>{key} </span> - </div> - <Tooltip content={series[key].value} position="auto"> - <div className="hide-content"> - {series[key] ? series[key].value : "N/A"} - </div> - </Tooltip> - </div> - )) - ) : ( - <> - <div className="flex-series-item"> - <Tooltip content={series.SeriesDescription.value} position="auto"> - <div className="hide-content"> - <span style={{ marginRight: "0.5em" }}> - {series.SeriesDescription.value} - </span>{" "} - </div> - </Tooltip> - - <div> - {pluralize( - +series.NumberOfSeriesRelatedInstances.value, - "file", - "files", - )} - </div> - </div> - - <div className="flex-series-item"> - <div>Modality</div> - <Badge key={series.SeriesInstanceUID.value}> - {series.Modality.value} - </Badge> - </div> - - <div className="flex-series-item"> - <div>Accession Number</div> - <Tooltip content={series.AccessionNumber.value} position="auto"> - <div className="hide-content"> - <span style={{ marginRight: "0.5em" }}> - {series.AccessionNumber.value} - </span>{" "} - </div> - </Tooltip> - </div> - </> - )} - - <div className="flex-series-item steps-container"> - {isResourceBeingFetched && !resourceErrorFound && !data ? ( - <DotsIndicator title="Fetching current status..." /> - ) : data ? ( - <Progress - className={`retrieve-progress ${ - data.totalFilesCount === seriesInstances && "progress-success" - } ${ - data.totalFilesCount < seriesInstances && - isFetching && - "progress-active" - }`} - title="Test" - aria-labelledby="Retrieve Progress" - value={data.totalFilesCount} - max={seriesInstances} - size={ProgressSize.sm} - helperText={resourceErrorFound ? helperText : ""} - variant={ - resourceErrorFound - ? ProgressVariant.danger - : data.totalFilesCount === seriesInstances - ? ProgressVariant.success - : undefined - } - measureLocation={ProgressMeasureLocation.top} - /> - ) : ( - resourceErrorFound && ( - <Alert - style={{ height: "100%" }} - closable - type="error" - message={errorMessages} - description={<span>{retrieveButton}</span>} - /> - ) - )} - </div> - - <div className="flex-series-item button-container"> - {((data && data.totalFilesCount <= 0 && !isFetching) || - resourceErrorFound) && ( - <Tooltip content="Retrieve Series">{retrieveButton}</Tooltip> - )} - {isFetching && data && data.totalFilesCount < 1 && ( - <DotsIndicator title="Retrieving the series" /> - )} - {data?.fileToPreview && filePreviewButton} - </div> - </CardHeader> - ); - - return ( - <Card - isDisabled={isDisabled} - isFlat={true} - isFullHeight={true} - isCompact={true} - isRounded={true} - > - {preview && data?.fileToPreview ? filePreviewLayout : rowLayout} - {data?.fileToPreview && largeFilePreview} - - {/* Error handling for fetching a pacs file for preview */} - {pacsFileError && <Alert type="error" description={pacsFileError} />} - </Card> - ); -}; - -export default SeriesCardCopy; diff --git a/src/components/Pacs/components/SettingsComponents.tsx b/src/components/Pacs/components/SettingsComponents.tsx deleted file mode 100644 index 0ed27e8ae..000000000 --- a/src/components/Pacs/components/SettingsComponents.tsx +++ /dev/null @@ -1,215 +0,0 @@ -import { Button, Checkbox } from "@patternfly/react-core"; -import { useQueryClient } from "@tanstack/react-query"; -import { Popover } from "../../Antd"; -import axios from "axios"; -import { useState } from "react"; -import ChrisApiClient from "../../../api/chrisapiclient"; -import { useTypedSelector } from "../../../store/hooks"; -import { NodeDetailsPanelIcon } from "../../Icons"; - -export const CardHeaderComponent = ({ - resource, - type, -}: { - resource: any; - type: string; -}) => { - const [settingsModal, setSettingsModal] = useState(false); - - return ( - <div> - <Popover - content={ - <SettingsComponent - resource={resource} - type={type} - handleModalClose={() => { - setSettingsModal(!settingsModal); - }} - /> - } - title="Study Card Configuration" - trigger="click" - open={settingsModal} - onOpenChange={() => { - setSettingsModal(!settingsModal); - }} - > - <Button - onClick={() => { - setSettingsModal(!settingsModal); - }} - variant="link" - icon={<NodeDetailsPanelIcon />} - /> - </Popover> - </div> - ); -}; - -export const SettingsComponent = ({ - resource, - type, - handleModalClose, -}: { - type: string; - resource: any; - handleModalClose: () => void; -}) => { - const queryClient = useQueryClient(); - const username = useTypedSelector((state) => state.user.username); - - const [recordDict, setRecordDict] = useState<Record<string, boolean>>({}); - - const handleChange = (key: string, checked: boolean) => { - if (!recordDict[key]) { - setRecordDict({ - ...recordDict, - [key]: checked, - }); - } else { - const newState = { ...recordDict }; - delete newState[key]; - setRecordDict(newState); - } - }; - - const saveUserData = async () => { - const url = `${import.meta.env.VITE_CHRIS_UI_URL}uploadedfiles/`; - - const client = ChrisApiClient.getClient(); - await client.setUrls(); - const formData = new FormData(); - const fileName = "settings.json"; - - const path = `${username}/uploads/config`; - const pathList = await client.getFileBrowserPath(path); - - try { - let existingContent: { - [key: string]: Record<string, boolean>; - } = {}; - if (pathList) { - const files = await pathList.getFiles(); - const fileItems = files.getItems(); - - if (fileItems) { - // Use Promise.all to wait for all async operations to complete - const fileContentArray = await Promise.all( - fileItems.map(async (_file) => { - const blob = await _file.getFileBlob(); - const reader = new FileReader(); - - // Use a Promise to wait for the reader.onload to complete - const readPromise = new Promise((resolve) => { - reader.onload = (e) => { - const contents = (e?.target?.result as string) || "{}"; - resolve(JSON.parse(contents)); - }; - }); - - reader.readAsText(blob); - - // Delete the file after processing - await _file._delete(); - - // Wait for the reader.onload to complete before moving to the next file - return await readPromise; - }), - ); - - existingContent = fileContentArray[0] as { - [key: string]: Record<string, boolean>; - }; - } - } - - const dataTransformed = { [type]: recordDict }; - - const data = JSON.stringify({ - ...existingContent, - ...dataTransformed, - }); - - formData.append("upload_path", `${username}/uploads/config/${fileName}`); - - formData.append( - "fname", - new Blob([data], { - type: "application/json", - }), - fileName, - ); - - const config = { - headers: { - Authorization: `Token ${client.auth.token}`, - }, - }; - - await axios.post(url, formData, config); - - queryClient.invalidateQueries({ - queryKey: ["metadata"], - }); - - setRecordDict({}); - handleModalClose(); - } catch (error) { - console.error("Error:", error); - } - }; - - return ( - <div> - {Object.entries(resource).map(([key]) => { - return ( - <div key={key} style={{ display: "flex", alignItems: "center" }}> - <Checkbox - id={key} - isChecked={recordDict[key] ? true : false} - onChange={(_event, checked: boolean) => { - handleChange(key, checked); - }} - aria-label={`Study ${key} Checkbox`} - /> - <div - style={{ - flex: "1", - display: "flex", - alignItems: "center", - marginLeft: "1rem", - fontWeight: "bold", - }} - > - {key} - </div> - </div> - ); - })} - - <Button - onClick={() => saveUserData()} - variant="secondary" - style={{ - marginTop: "1rem", - }} - > - Submit - </Button> - - <Button - style={{ - marginLeft: "1rem", - }} - variant="secondary" - onClick={async () => { - setRecordDict({}); - await saveUserData(); - }} - > - Reset to Default - </Button> - </div> - ); -}; diff --git a/src/components/Pacs/components/StudyCard.tsx b/src/components/Pacs/components/StudyCard.tsx deleted file mode 100644 index b2436df17..000000000 --- a/src/components/Pacs/components/StudyCard.tsx +++ /dev/null @@ -1,366 +0,0 @@ -import { - Badge, - Button, - Card, - CardHeader, - Grid, - GridItem, - Skeleton, - Tooltip, -} from "@patternfly/react-core"; -import { notification } from "antd"; -import { format, parse } from "date-fns"; -import { useContext, useEffect, useState } from "react"; -import { DotsIndicator } from "../../Common"; -import { - DownloadIcon, - PreviewIcon, - QuestionCircleIcon, - RetryIcon, - ThLargeIcon, -} from "../../Icons"; -import { PacsQueryContext, Types } from "../context"; -import PfdcmClient from "../pfdcmClient"; -import useSettings from "../useSettings"; -import SeriesCard from "./SeriesCard"; -import { CardHeaderComponent } from "./SettingsComponents"; -import usePullStudyHook from "./usePullStudyHook"; - -const StudyCardCopy = ({ study }: { study: any }) => { - const [api, contextHolder] = notification.useNotification(); - const { writeStatus, getStatus } = usePullStudyHook(); - const { data, isLoading, isError } = useSettings(); - const { state, dispatch } = useContext(PacsQueryContext); - const [isStudyExpanded, setIsStudyExpanded] = useState(false); - const [startPullStudy, setStartStudying] = useState(false); - const { preview, pullStudy, studyPullTracker, selectedPacsService } = state; - const userPreferences = data?.study; - const userPreferencesArray = userPreferences && Object.keys(userPreferences); - const accessionNumber = study.AccessionNumber.value; - const studyDate = study.StudyDate.value; - const parsedDate = parse(studyDate, "yyyyMMdd", new Date()); - const formattedDate = Number.isNaN( - parsedDate.getTime(), - ) /* Check if parsedDate is a valid date */ - ? studyDate - : format(parsedDate, "MMMM d, yyyy"); - - const clearState = async () => { - dispatch({ - type: Types.SET_PULL_STUDY, - payload: { - studyInstanceUID: accessionNumber, - status: false, - }, - }); - // stop tracking this status as an active pull - await writeStatus(accessionNumber, false); - }; - - useEffect(() => { - async function setUpStatus() { - if (studyPullTracker[accessionNumber] && pullStudy[accessionNumber]) { - const studyBeingTracked = studyPullTracker[accessionNumber]; - if (studyBeingTracked) { - let allSeriesBeingTracked = true; - for (const series in studyBeingTracked) { - const isSeriesDone = studyBeingTracked[series]; - if (!isSeriesDone) { - allSeriesBeingTracked = false; - break; - } - } - - // All series are being tracked and are complete - if ( - allSeriesBeingTracked && - study.series.length === Object.keys(studyBeingTracked).length - ) { - await clearState(); - } - } - } - } - - setUpStatus(); - }, [studyPullTracker[accessionNumber], pullStudy[accessionNumber]]); - - useEffect(() => { - async function fetchStatus() { - const status = await getStatus(accessionNumber); - if (status?.[accessionNumber]) { - setIsStudyExpanded(true); - dispatch({ - type: Types.SET_PULL_STUDY, - payload: { - studyInstanceUID: accessionNumber, - status: true, - }, - }); - } - } - // Fetch Status - fetchStatus(); - }, []); - - const retrieveStudy = async () => { - setStartStudying(true); - await writeStatus(study.AccessionNumber.value, true); - const client = new PfdcmClient(); - await client.findRetrieve(selectedPacsService, { - AccessionNumber: study.AccessionNumber.value, - }); - dispatch({ - type: Types.SET_PULL_STUDY, - payload: { - studyInstanceUID: accessionNumber, - status: true, - }, - }); - setStartStudying(false); - setIsStudyExpanded(true); - }; - - return ( - <> - {contextHolder} - <Card - isFlat={true} - isFullHeight={true} - isCompact={true} - isRounded={true} - isExpanded={isStudyExpanded} - isSelectable - isClickable - > - <CardHeader - actions={{ - actions: <CardHeaderComponent resource={study} type="study" />, - }} - className="flex-studies-container" - onExpand={() => setIsStudyExpanded(!isStudyExpanded)} - > - <> - {isLoading ? ( - <div className="flex-studies-item"> - <Skeleton - width="100%" - height="100%" - screenreaderText="Loading contents" - /> - </div> - ) : ( - <> - {!isError && - userPreferences && - userPreferencesArray && - userPreferencesArray.length > 0 ? ( - userPreferencesArray.map((key: string) => ( - <div key={key} className="flex-studies-item"> - <div className="study-detail-title">{key}</div> - <Tooltip content={study[key].value} position="auto"> - <div - style={{ - overflow: "hidden", - textOverflow: "ellipsis", - whiteSpace: "nowrap", - }} - > - <span style={{ marginRight: "0.5em" }}> - {study[key].value && study[key].value} - </span>{" "} - </div> - </Tooltip> - </div> - )) - ) : ( - <> - <div className="flex-studies-item"> - <Tooltip - content={study.StudyDescription.value} - position="auto" - > - <div - style={{ - overflow: "hidden", - textOverflow: "ellipsis", - whiteSpace: "nowrap", - }} - > - <span style={{ marginRight: "0.5em" }}> - {study.StudyDescription.value && - study.StudyDescription.value} - </span>{" "} - </div> - </Tooltip> - <div> - {study.NumberOfStudyRelatedSeries.value && - study.NumberOfStudyRelatedSeries.value}{" "} - series, {formattedDate} - </div> - </div> - <div className="flex-studies-item "> - <div className="study-detail-title"> - Modalities in Study - </div> - <div> - {study.ModalitiesInStudy.value - ?.split("\\") - .map((m: string, index: number) => ( - <Badge - style={{ margin: "auto 0.125em" }} - key={`${m}_${index}`} - > - {m} - </Badge> - ))} - </div> - </div> - <div className="flex-studies-item"> - <div className="study-detail-title">Accession Number</div> - {study.AccessionNumber.value?.startsWith("no value") ? ( - <Tooltip content={study.AccessionNumber}> - <QuestionCircleIcon /> - </Tooltip> - ) : ( - <div>{study.AccessionNumber.value}</div> - )} - </div> - <div className="flex-studies-item"> - <div className="study-detail-title">Station</div> - {study.PerformedStationAETitle.value?.startsWith( - "no value", - ) ? ( - <Tooltip content={study.PerformedStationAETitle.value}> - <QuestionCircleIcon /> - </Tooltip> - ) : ( - <div>{study.PerformedStationAETitle.value}</div> - )} - </div> - </> - )} - </> - )} - <div className="flex-studies-item button-container"> - {import.meta.env.VITE_OHIF_URL && ( - <Tooltip content="Open in OHIF"> - <Button - size="sm" - variant="secondary" - style={{ marginRight: "0.25em" }} - icon={<ThLargeIcon />} - component="a" - href={`${ - import.meta.env.VITE_OHIF_URL - }viewer?StudyInstanceUIDs=${study.StudyInstanceUID.value}`} - target="_blank" - /> - </Tooltip> - )} - <Tooltip - content={ - preview === true ? "Hide All Previews" : "Show All Previews" - } - > - <Button - size="sm" - variant="tertiary" - style={{ marginRight: "0.25em" }} - onClick={() => { - dispatch({ - type: Types.SET_SHOW_PREVIEW, - payload: { - preview: !preview, - }, - }); - - if (preview === false) { - setIsStudyExpanded(true); - } - }} - icon={<PreviewIcon />} - /> - </Tooltip> - - {pullStudy[accessionNumber] || startPullStudy ? ( - <> - <Tooltip content="Retry the pull if you see no progress"> - <Button - onClick={async () => { - await clearState(); - }} - variant="danger" - style={{ - marginLeft: "0.5em", - }} - size="sm" - icon={<RetryIcon />} - /> - </Tooltip> - <DotsIndicator title="Pulling Study..." /> - </> - ) : ( - <Tooltip content="Pull Study"> - <Button - onClick={async () => { - const status = await getStatus(accessionNumber); - if (status?.[accessionNumber]) { - api.info({ - message: "This study has already been pulled", - description: ( - <Button - variant="tertiary" - onClick={async () => { - await retrieveStudy(); - }} - > - Pull again? - </Button> - ), - duration: 4, - }); - setIsStudyExpanded(true); - } else { - await retrieveStudy(); - } - }} - variant="tertiary" - className="button-with-margin" - size="sm" - icon={<DownloadIcon />} - /> - </Tooltip> - )} - </div> - </> - </CardHeader> - </Card> - {isStudyExpanded && ( - <div className="patient-series"> - <Grid hasGutter> - {study.series.map((series: any) => { - return ( - <GridItem - key={series.SeriesInstanceUID.value} - rowSpan={1} - lg={12} - md={12} - sm={12} - xl={12} - > - <SeriesCard - key={series.SeriesInstanceUID.value} - series={series} - /> - </GridItem> - ); - })} - </Grid> - </div> - )} - </> - ); -}; - -export default StudyCardCopy; diff --git a/src/components/Pacs/components/input.test.ts b/src/components/Pacs/components/input.test.ts new file mode 100644 index 000000000..6c2510d04 --- /dev/null +++ b/src/components/Pacs/components/input.test.ts @@ -0,0 +1,12 @@ +import { test, expect } from "vitest"; +import { isQueryEmpty } from "./input.tsx"; + +test.each([ + [null, true], + [{}, true], + [{ patientID: "" }, true], + [{ patientID: "", AccessionNumber: "" }, true], + [{ patientID: "bob" }, false], +])("isQueryEmpty(%o) -> %b", (query, expected) => { + expect(isQueryEmpty(query)).toBe(expected); +}); diff --git a/src/components/Pacs/components/input.tsx b/src/components/Pacs/components/input.tsx new file mode 100644 index 000000000..ba4906fc0 --- /dev/null +++ b/src/components/Pacs/components/input.tsx @@ -0,0 +1,192 @@ +import React from "react"; +import { PACSqueryCore } from "../../../api/pfdcm"; +import { + Button, + Dropdown, + DropdownItem, + DropdownList, + Grid, + GridItem, + MenuToggle, + MenuToggleElement, + TextInputGroup, + TextInputGroupMain, + ToggleGroup, + ToggleGroupItem, +} from "@patternfly/react-core"; +import { hideOnDesktop, hideOnMobile } from "../../../cssUtils.ts"; +import { SearchIcon, TimesIcon } from "@patternfly/react-icons"; + +type InputFieldProps = { + setQuery: (query: PACSqueryCore) => void; + query: PACSqueryCore; + id?: string; + "aria-label"?: string; +}; + +type PacsInputProps = InputFieldProps & { + service: string; + services: ReadonlyArray<string>; + setService: (service: string) => void; +}; + +/** + * An input field for searching in PACS by MRN + */ +const MrnInput: React.FC<InputFieldProps> = ({ query, setQuery, ...props }) => { + const clearInput = () => setQuery({}); + + return ( + <TextInputGroup> + <TextInputGroupMain + icon={<SearchIcon />} + value={query.patientID || ""} + onChange={(_event, value) => + setQuery({ + patientID: value, + }) + } + name="mrnSearchInput" + placeholder="Search for DICOM studies by MRN" + /> + {!isQueryEmpty(query) && ( + <Button + variant="plain" + onClick={clearInput} + aria-label="Clear button and input" + > + <TimesIcon /> + </Button> + )} + </TextInputGroup> + ); +}; + +/** + * An advanced search input field for searching in PACS by PatientID, AccessionNumber, ... + */ +const AdvancedInput: React.FC<InputFieldProps> = ({ + query, + setQuery, + ...props +}) => { + return ( + <> + <h1>Advanced search not implemented.</h1> + </> + ); +}; + +type ServiceDropdownProps = { + service: string; + setService: (service: string) => void; + services: ReadonlyArray<string>; +}; + +const ServiceDropdown: React.FC<ServiceDropdownProps> = ({ + service, + services, + setService, +}) => { + const [isOpen, setIsOpen] = React.useState(false); + return ( + <Dropdown + isOpen={isOpen} + onSelect={(_e, value) => { + typeof value === "string" && setService(value); + setIsOpen(false); + }} + onOpenChange={(isOpen: boolean) => setIsOpen(isOpen)} + toggle={(toggleRef: React.Ref<MenuToggleElement>) => ( + <MenuToggle + ref={toggleRef} + onClick={() => setIsOpen((open) => !open)} + isExpanded={isOpen} + isFullWidth + title="PACS service" + > + {service} + </MenuToggle> + )} + > + <DropdownList> + {services.map((service) => ( + <DropdownItem value={service} key={service}> + {service} + </DropdownItem> + ))} + </DropdownList> + </Dropdown> + ); +}; + +/** + * A `<span>` which shows different text on mobile vs desktop layouts. + */ +const ScreenSizeSpan: React.FC<{ + mobile: React.ReactNode; + desktop: React.ReactNode; +}> = ({ mobile, desktop }) => ( + <> + <span className={hideOnDesktop}>{mobile}</span> + <span className={hideOnMobile}>{desktop}</span> + </> +); + +const PacsInput: React.FC<PacsInputProps> = ({ + service, + services, + setService, + ...props +}) => { + const [advancedSearch, setAdvancedSearch] = React.useState(false); + + const InputElement = advancedSearch ? AdvancedInput : MrnInput; + + const advancedSearchToggle = ( + <ToggleGroup> + <ToggleGroupItem + text={<ScreenSizeSpan mobile="MRN" desktop="MRN Search" />} + isSelected={!advancedSearch} + onChange={() => setAdvancedSearch(false)} + /> + <ToggleGroupItem + text={<ScreenSizeSpan mobile="Advanced" desktop="Advanced Search" />} + isSelected={advancedSearch} + onChange={() => setAdvancedSearch(true)} + /> + </ToggleGroup> + ); + + const serviceDropdown = ( + <ServiceDropdown + services={services} + service={service} + setService={setService} + /> + ); + + return ( + <Grid> + <GridItem span={6} md={3}> + {advancedSearchToggle} + </GridItem> + <GridItem span={6} md={3} order={{ md: "2" }}> + {serviceDropdown} + </GridItem> + <GridItem span={12} md={6}> + <InputElement {...props} /> + </GridItem> + </Grid> + ); +}; + +function isQueryEmpty(query: { [key: string]: any } | null): boolean { + return ( + query === null || + Object.values(query).findIndex((value) => `${value}`.length > 0) === -1 + ); +} + +export default PacsInput; +export { isQueryEmpty }; diff --git a/src/components/Pacs/components/loading.tsx b/src/components/Pacs/components/loading.tsx new file mode 100644 index 000000000..40677f75e --- /dev/null +++ b/src/components/Pacs/components/loading.tsx @@ -0,0 +1,22 @@ +import { Skeleton } from "@patternfly/react-core"; +import Spacing from "@patternfly/react-styles/css/utilities/Spacing/spacing"; + +const PacsLoadingScreen = () => ( + <> + <Skeleton + height="50px" + className={Spacing.mb_4xl} + screenreaderText="Loading ChRIS PACS query and retrieve app" + /> + <Skeleton height="40px" width="90%" className={Spacing.mbSm} /> + <Skeleton height="40px" width="90%" className={Spacing.mbSm} /> + <br /> + <Skeleton height="40px" width="90%" className={Spacing.mbSm} /> + <Skeleton height="40px" width="90%" className={Spacing.mbSm} /> + <br /> + <Skeleton height="40px" width="90%" className={Spacing.mbSm} /> + <Skeleton height="40px" width="90%" className={Spacing.mbSm} /> + </> +); + +export default PacsLoadingScreen; diff --git a/src/components/Pacs/components/usePullStudyHook.tsx b/src/components/Pacs/components/usePullStudyHook.tsx deleted file mode 100644 index 21506d3d8..000000000 --- a/src/components/Pacs/components/usePullStudyHook.tsx +++ /dev/null @@ -1,124 +0,0 @@ -import ChrisAPIClient from "../../../api/chrisapiclient"; -import axios from "axios"; -import { useTypedSelector } from "../../../store/hooks"; -import { catchError } from "../../../api/common"; - -const usePullStudyHook = () => { - const userName = useTypedSelector((state) => state.user.username); - const url = `${import.meta.env.VITE_CHRIS_UI_URL}uploadedfiles/`; - const client = ChrisAPIClient.getClient(); - const token = client.auth.token; - - const writeStatus = async (accessionNumber: string, type: boolean) => { - try { - const status = await getStatus(accessionNumber); - // delete this file - await deleteFile(accessionNumber); - // delete this file if it already exists - const client = ChrisAPIClient.getClient(); - const path = `${userName}/uploads/pacs/${accessionNumber}`; - const fileName = "pacsStatus.json"; - const formData = new FormData(); - - const data = JSON.stringify({ - ...status, - [accessionNumber]: type, - }); - formData.append("upload_path", `${path}/${fileName}`); - formData.append( - "fname", - new Blob([data], { - type: "application/json", - }), - ); - - const config = { - headers: { - Authorization: `Token ${client.auth.token}`, - }, - }; - - const response = await axios.post(url, formData, config); - return response; - } catch (error) { - const error_message = catchError(error).error_message; - throw new Error(error_message); - } - }; - - const deleteFile = async (accessionNumber: string) => { - const file = await getFile(accessionNumber); - if (file) { - const url = file.url; - await axios.delete(url, { - headers: { - Authorization: `Token ${token}`, - }, - }); - } - }; - - const getFile = async (accessionNumber: string) => { - const client = ChrisAPIClient.getClient(); - const path = `${userName}/uploads/pacs/${accessionNumber}/pacsStatus.json`; - const url = `${ - import.meta.env.VITE_CHRIS_UI_URL - }uploadedfiles/search?fname_exact=${path}`; - - try { - const response = await axios.get(url, { - headers: { - "Content-Type": "application/json", - Authorization: `Token ${client.auth.token}`, - }, - }); - - // If there is more than file don't write. Something has corrupted - if (response.data.results.length <= 1) { - const file = response.data.results[0]; - return file; - } - throw new Error("Failed to fetch the file..."); - } catch (error) { - if (error instanceof Error) { - throw new Error(error.message); - } - const error_message = catchError(error).error_message; - throw new Error(error_message); - } - }; - - const getStatus = async (accessionNumber: string) => { - try { - const client = ChrisAPIClient.getClient(); - // Get this file first - const file = await getFile(accessionNumber); - if (file) { - // file already exists; - try { - const response = await axios.get(file.file_resource, { - headers: { - "Content-Type": "blob", - Authorization: `Token ${client.auth.token}`, - }, - }); - - if (response?.data) { - return response.data; - } - } catch (error) { - if (error instanceof Error) throw new Error(error.message); - } - } - } catch (error) { - if (error instanceof Error) throw new Error(error.message); - } - }; - - return { - writeStatus, - getStatus, - deleteFile, - }; -}; -export default usePullStudyHook; diff --git a/src/components/Pacs/components/utils.ts b/src/components/Pacs/components/utils.ts deleted file mode 100644 index 87c242bef..000000000 --- a/src/components/Pacs/components/utils.ts +++ /dev/null @@ -1,36 +0,0 @@ -import { parse, format } from "date-fns"; - -export const formatStudyDate = (studyDateString: string) => { - // Parse the input string to a Date object - const parsedDate = parse(studyDateString, "yyyyMMdd", new Date()); - - // Format the Date object to 'MMMM d yyyy' format (e.g., 'December 6 2011') - const formattedDate = format(parsedDate, "MMMM d yyyy"); - - // Determine the day part of the formatted date - const day: any = format(parsedDate, "d"); - - // Add 'st', 'nd', 'rd', or 'th' to the day part of the formatted date - const dayWithSuffix = getDayWithSuffix(day); - - return formattedDate.replace(day, dayWithSuffix); -}; - -const getDayWithSuffix = (day: number) => { - if (day >= 11 && day <= 13) { - return `${day}th`; - } - - const lastDigit = day % 10; - - switch (lastDigit) { - case 1: - return `${day}st`; - case 2: - return `${day}nd`; - case 3: - return `${day}rd`; - default: - return `${day}th`; - } -}; diff --git a/src/components/Pacs/index.tsx b/src/components/Pacs/index.tsx index 294865ac2..21a0f1da0 100644 --- a/src/components/Pacs/index.tsx +++ b/src/components/Pacs/index.tsx @@ -1,563 +1,27 @@ -import { - Button, - Dropdown, - DropdownItem, - DropdownList, - Grid, - GridItem, - MenuToggle, - PageSection, - Split, - SplitItem, - TextInput, -} from "@patternfly/react-core"; -import SearchIcon from "@patternfly/react-icons/dist/esm/icons/search-icon"; -import { Alert, Spin } from "../Antd"; -import * as React from "react"; -import { useNavigate } from "react-router"; -import { useSearchParams } from "react-router-dom"; -import { pluralize } from "../../api/common"; -import { EmptyStateComponent, SpinContainer } from "../Common"; -import WrapperConnect from "../Wrapper"; -import PatientCard from "./components/PatientCard"; -import { PacsQueryContext, PacsQueryProvider, Types } from "./context"; -import "./pacs-copy.css"; -import PfdcmClient from "./pfdcmClient"; -import { DownloadIcon } from "../Icons"; +import Wrapper from "../Wrapper"; +import { Configuration as PfdcmConfig, PfdcmClient } from "../../api/pfdcm"; -const dropdownMatch: { [key: string]: string } = { - PatientID: "Patient MRN", - PatientName: "Patient Name", - AccessionNumber: "Accession Number", -}; - -const PacsCopy = () => { - React.useEffect(() => { - document.title = "My Library"; - }, []); - - return ( - <WrapperConnect> - <PageSection> - <PacsQueryProvider> - <QueryBuilder /> - <Results /> - </PacsQueryProvider> - </PageSection> - </WrapperConnect> - ); -}; - -export default PacsCopy; - -const client = new PfdcmClient(); -const actions = ["Patient MRN", "Patient Name", "Accession Number"]; - -const QueryBuilder = () => { - const navigate = useNavigate(); - const [searchParams] = useSearchParams(); - - const { state, dispatch } = React.useContext(PacsQueryContext); - const [queryOpen, setQueryOpen] = React.useState(false); - const [value, setValue] = React.useState(""); - const [pacsListOpen, setPacsListOpen] = React.useState(false); - const [errorState, setErrorState] = React.useState(""); - - const { pacsServices, selectedPacsService, currentQueryType, queryResult } = - state; - - const service = searchParams.get("service"); - const queryType = searchParams.get("queryType"); - const searchValue = searchParams.get("value"); - - const responseCache = React.useRef(new Map()); - - const handleSubmitQuery = React.useCallback( - async ( - navigateToDifferentRoute: boolean, - currentQueryType: string, - value: string, - selectedPacsService = "default", - ) => { - const cacheKey = `${currentQueryType}-${value}-${selectedPacsService}`; - // Check if the response for the query is already cached - if (responseCache.current.has(cacheKey)) { - return; - } - // Cache the response - responseCache.current.set(cacheKey, 1); - - if (value.length > 0 && currentQueryType) { - // Reset Search Results in the state first to avoid duplication if search button is hit twice or if the page is refreshed - // and the ui is trying to construct the page with url search params - dispatch({ - type: Types.RESET_SEARCH_RESULTS, - payload: null, - }); - - const csv = value.trim().split(/[,\s]+/); - - dispatch({ - type: Types.SET_LOADING_SPINNER, - payload: { - status: true, - text: `Fetching ${csv.length} ${pluralize("result", csv.length)} `, - }, - }); - - const responses = []; - - for (const value of csv) { - try { - const response = await client.find( - { - [currentQueryType]: value.trimStart().trimEnd(), - }, - selectedPacsService, - ); - response && responses.push(response); - dispatch({ - type: Types.SET_LOADING_SPINNER, - payload: { - status: true, - text: `Completed ${responses.length} of ${csv.length} searches`, - }, - }); - - dispatch({ - type: Types.SET_SEARCH_RESULT, - payload: { - queryResult: response, - }, - }); - } catch (error: any) { - setErrorState(error.message); - dispatch({ - type: Types.SET_LOADING_SPINNER, - payload: { - status: true, - text: `Completed ${responses.length} of ${csv.length} searches. Found an error for value ${value}`, - }, - }); - } - } - - dispatch({ - type: Types.SET_LOADING_SPINNER, - payload: { - status: false, - text: "Search Complete", - }, - }); - - if (navigateToDifferentRoute) { - navigate( - `/pacs?queryType=${currentQueryType}&value=${value}&service=${selectedPacsService}`, - ); - } - } else { - setErrorState( - "Please ensure PACS service, Search Value, and the Query Type are all selected.", - ); - } - }, - [dispatch, navigate], - ); - - React.useEffect(() => { - client - .getPacsServices() - .then((list) => { - if (list) { - dispatch({ - type: Types.SET_LIST_PACS_SERVICES, - payload: { - pacsServices: list, - }, - }); - - const selectedPacsService = getDefaultPacsService(list); - - if (!service && selectedPacsService) { - dispatch({ - type: Types.SET_SELECTED_PACS_SERVICE, - payload: { selectedPacsService }, - }); - } - } - }) - .catch((error: any) => { - setErrorState(error.message); - }); - }, [dispatch, service]); - - React.useEffect(() => { - const fetchData = async () => { - if (queryType && searchValue && service) { - dispatch({ - type: Types.SET_SELECTED_PACS_SERVICE, - payload: { selectedPacsService: service }, - }); - - dispatch({ - type: Types.SET_CURRENT_QUERY_TYPE, - payload: { currentQueryType: queryType }, - }); - - if (queryResult.length === 0) { - setValue(searchValue); - await handleSubmitQuery(false, queryType, searchValue, service); - } - } - }; - - fetchData(); - }, []); - - const onToggle = () => { - setQueryOpen(!queryOpen); - }; - - const onTogglePacsList = () => { - setPacsListOpen(!pacsListOpen); - }; - - const queryBy = (action: string) => { - onToggle(); - switch (action) { - case "Patient MRN": { - dispatch({ - type: Types.SET_CURRENT_QUERY_TYPE, - payload: { - currentQueryType: "PatientID", - }, - }); - break; - } - case "Patient Name": { - dispatch({ - type: Types.SET_CURRENT_QUERY_TYPE, - payload: { - currentQueryType: "PatientName", - }, - }); - break; - } - - case "Accession Number": { - dispatch({ - type: Types.SET_CURRENT_QUERY_TYPE, - payload: { - currentQueryType: "AccessionNumber", - }, - }); - break; - } - default: - return; - } - }; - - return ( - <Grid hasGutter id="pacs-query-builder"> - <GridItem lg={12}> - <Split id="search" style={{ width: "100%" }}> - <SplitItem> - <Dropdown - isOpen={queryOpen} - id="query type" - aria-label="query type" - toggle={(toggleRef) => { - return ( - <MenuToggle onClick={onToggle} ref={toggleRef}> - <div style={{ fontWeight: 600 }}> - {currentQueryType - ? dropdownMatch[currentQueryType] - : "Query By"} - </div> - </MenuToggle> - ); - }} - > - <DropdownList> - {actions.map((action) => { - return ( - <DropdownItem onClick={() => queryBy(action)} key={action}> - {action} - </DropdownItem> - ); - })} - </DropdownList> - </Dropdown> - </SplitItem> - <SplitItem isFilled> - <TextInput - customIcon={<SearchIcon />} - value={value} - aria-label="Query" - onKeyDown={(e) => { - e.key === "Enter" && - handleSubmitQuery( - true, - currentQueryType, - value, - selectedPacsService, - ); - }} - onChange={(_event, value) => setValue(value)} - /> - </SplitItem> - <SplitItem> - <Dropdown - isOpen={pacsListOpen} - id="pacs list" - aria-label="pacs list" - toggle={(toggleRef) => { - return ( - <MenuToggle onClick={onTogglePacsList} ref={toggleRef}> - <div> - {selectedPacsService - ? selectedPacsService - : "Select a PACS Service"} - </div> - </MenuToggle> - ); - }} - > - <DropdownList> - {pacsServices ? ( - pacsServices.map((service: string) => { - return ( - <DropdownItem - key={service} - isActive={selectedPacsService === service} - onClick={() => { - dispatch({ - type: Types.SET_SELECTED_PACS_SERVICE, - payload: { - selectedPacsService: service, - }, - }); - onTogglePacsList(); - }} - > - {service} - </DropdownItem> - ); - }) - ) : ( - <DropdownItem>No service available</DropdownItem> - )} - </DropdownList> - </Dropdown> - </SplitItem> - <SplitItem - style={{ - marginLeft: "1em", - }} - > - <Button - onClick={() => { - handleSubmitQuery( - true, - currentQueryType, - value, - selectedPacsService, - ); - }} - > - Search - </Button> - </SplitItem> - </Split> - </GridItem> - {errorState && ( - <GridItem lg={12}> - <Alert - onClose={() => { - setErrorState(""); - }} - closable - type="error" - description={errorState} - /> - </GridItem> - )} - </Grid> - ); -}; - -// Utility function to flatten a nested object, focusing on 'label' and 'value' -const flattenObject = (obj: any, _parent = "", res: any = {}): any => { - for (const key in obj) { - // biome-ignore lint/suspicious/noPrototypeBuiltins: <explanation> - if (obj.hasOwnProperty(key)) { - if ( - typeof obj[key] === "object" && - obj[key] !== null && - !Array.isArray(obj[key]) - ) { - if (obj[key].label && obj[key].value !== undefined) { - res[obj[key].label] = obj[key].value; - } else { - flattenObject(obj[key], key, res); - } - } else if (Array.isArray(obj[key])) { - obj[key].forEach((item: any, index: number) => { - flattenObject(item, `${key}[${index}]`, res); - }); - } else { - res[key] = obj[key]; - } - } - } - return res; -}; - -// Utility function to convert JSON array to CSV -const jsonToCSV = (jsonArray: any[]): string | null => { - if (!jsonArray || !jsonArray.length) { - return null; - } - - // Flatten each JSON object in the array - const flattenedArray = jsonArray.map((item) => flattenObject(item)); - - // Extract keys (header row) - const keys = Object.keys(flattenedArray[0]); - const csvRows: string[] = []; - - // Add the header row - csvRows.push(keys.join(",")); - - // Add the data rows - flattenedArray.forEach((item) => { - const values = keys.map( - (key) => `"${item[key] !== undefined ? item[key] : ""}"`, - ); - csvRows.push(values.join(",")); - }); - - return csvRows.join("\n"); -}; - -const Results: React.FC = () => { - const { state } = React.useContext(PacsQueryContext); - const [exporting, setExporting] = React.useState(false); - - const { queryResult, fetchingResults } = state; - - const exportAsCSV = (): void => { - setExporting(true); - // Flatten the data arrays from all query results, including empty data results - const allData = queryResult.flatMap((result: any) => { - if (result.data.length > 0) { - return result.data; - } - // Include empty result with a message and relevant patient info - return [ - { - PatientID: result.args.PatientID, - PatientName: result.args.PatientName, - AccessionNumber: result.args.AccessionNumber, - Message: "No results found", - }, - ]; - }); - - const csvData = jsonToCSV(allData); - setExporting(false); - - if (csvData) { - // Create a blob - const blob = new Blob([csvData], { type: "text/csv;charset=utf-8;" }); - - // Create a link element - const link = document.createElement("a"); - link.href = URL.createObjectURL(blob); - link.download = "search_results.csv"; - - // Append the link to the document body and click it to trigger download - document.body.appendChild(link); - link.click(); - - // Remove the link element from the document - document.body.removeChild(link); - } - }; - - return ( - <div> - {fetchingResults.status && <SpinContainer title={fetchingResults.text} />} - {queryResult.length > 0 && ( - <div - style={{ - marginTop: "0.5em", - display: "flex", - justifyContent: "flex-end", - }} - > - <Button - size="sm" - variant="secondary" - icon={exporting ? <Spin /> : <DownloadIcon />} - onClick={() => exportAsCSV()} - style={{ marginLeft: 0 }} - > - {exporting ? "Exporting as CSV..." : "Export as CSV"} - </Button> - </div> - )} - {queryResult.length > 0 && - queryResult.map((result: any, index: number) => { - if (result && result.data.length > 0) { - return ( - <div - key={`result_${ - // biome-ignore lint/suspicious/noArrayIndexKey: <explanation> - index - }`} - className="result-grid" - > - <PatientCard queryResult={result.data} /> - </div> - ); - } - return ( - <EmptyStateComponent - key={`result${ - // biome-ignore lint/suspicious/noArrayIndexKey: <explanation> - index - }`} - title={`No results found for : ${result.args.PatientID} ${result.args.PatientName} ${result.args.AccessionNumber}`} - /> - ); - })} - {!fetchingResults.status && queryResult.length === 0 && ( - <EmptyStateComponent title="Please enter a search term to see results" /> - )} - </div> - ); -}; +import ChrisAPIClient from "../../api/chrisapiclient.ts"; +import PacsQRApp from "./app.tsx"; /** - * Selects the default PACS service (which is usually not the PACS service literally called "default"). - * - * 1. Selects the hard-coded "PACSDCM" - * 2. Attempts to select the first value which is not "default" (a useless, legacy pfdcm behavior) - * 3. Selects the first value + * Get a PFDCM client for the URL specified by the environment variable + * `VITE_PFDCM_URL`. */ -function getDefaultPacsService(services: ReadonlyArray<string>): string | null { - if (services.includes("PACSDCM")) { - return "PACSDCM"; - } - for (const service of services) { - if (service !== "default") { - return service; - } - } - if (services) { - return services[0]; - } - return null; +function getEnvPfdcmClient(): PfdcmClient { + const config = new PfdcmConfig({ + basePath: import.meta.env.VITE_PFDCM_URL, + }); + return new PfdcmClient(config); } + +const WrappedPacsQRApp = () => ( + <Wrapper> + <PacsQRApp + getChrisClient={ChrisAPIClient.getClient} + getPfdcmClient={getEnvPfdcmClient} + /> + </Wrapper> +); + +export default WrappedPacsQRApp; diff --git a/src/components/Pacs/pacs-copy.css b/src/components/Pacs/pacs-copy.css deleted file mode 100644 index 5aa12075d..000000000 --- a/src/components/Pacs/pacs-copy.css +++ /dev/null @@ -1,123 +0,0 @@ -.result-grid, -.patient-studies, -.patient-series { - margin-top: 1em; -} - - - -.patient-studies, -.patient-series { - padding: 1em 2em; - border-right: 0.5px solid lightgray; - border-left: 0.5px solid lightgray; -} - -.pf-v5-c-card__header-main { - flex: 1; - display: flex; - flex-flow: wrap; - justify-content: space-between; -} - -@media (min-width: 769px) { - .last-item-align { - text-align: right; - } -} - -.series-grid { - margin-top: 1rem; -} - -.flex-studies-item { - width: 18%; - margin-left: 0.5em; -} - -.button-with-margin { - margin-top: 0.25em; -} - -.flex-series-item { - width: 15%; - margin-left: 1em; -} - -.steps-container { - flex: 2; -} - -.flex-series-item.button-container { - flex: 1; - margin-left: 1.5em; -} - -@media (max-width: 600px) { - .flex-series-item { - width: 100%; /* Set full width for all elements on smaller screens */ - } - - .flex-series-item.steps-container { - flex: 1; /* Adjust the flex value for steps container on smaller screens */ - } - - .flex-series-item.button-container { - flex: 1; /* Adjust the flex value for button container on smaller screens */ - } -} - -.hide-content { - overflow: hidden; - text-overflow: ellipsis; - white-space: nowrap; -} - - -.retrieve-progress { - .pf-v5-c-progress__description { - display:none !important; - } -} - - -.series-actions { - z-index:1; - position: absolute; - top: 0; - left: 0; - bottom: 0; - right: 0; - display: flex; - justify-content: center; - align-items: center; - opacity: 0; - visibility: hiddem; - transition: opacity 0.3s, visibility 0.3s; -} - -.series-actions:hover { - z-index: 1; - opacity: 1; - visibility: visible; -} - -.action-button-container { - display: flex; - align-items: center; - flex-direction:column; -} - -.progress-active { - .pf-v5-c-progress__indicator{ - background-color: #BEE1F4 - } -} - -.progress-success{ - .pf-v5-c-progress__indicator{ - background-color:#0066CC; - } -} - - diff --git a/src/components/Pacs/pacs.tsx b/src/components/Pacs/pacs.tsx new file mode 100644 index 000000000..e4736692d --- /dev/null +++ b/src/components/Pacs/pacs.tsx @@ -0,0 +1,48 @@ +import LonkClient from "../../api/lonk"; +import FpClient from "../../api/fp/chrisapi.ts"; +import React from "react"; +import { PACSqueryCore } from "../../api/pfdcm"; +import PacsInput from "./components/input.tsx"; + +type PacsQRProps = { + lonkClient: LonkClient; + fpClient: FpClient; + services: ReadonlyArray<string>; + service: string; + setService: (service: string) => void; + pushError: (title: string) => (e: Error) => void; +}; + +/** + * PACS Query and Retrieve component. + * + * This component has a text input field for specifying a PACS query, + * and provides functionality for: + * + * - searching for DICOM studies and series + * - pulling DICOM series data into *ChRIS* + */ +const PacsQR: React.FC<PacsQRProps> = ({ + lonkClient, + fpClient, + services, + service, + setService, +}) => { + const [query, setQuery] = React.useState<PACSqueryCore>({}); + + return ( + <> + <PacsInput + query={query} + setQuery={setQuery} + services={services} + service={service} + setService={setService} + id="pacsqr-input" + /> + </> + ); +}; + +export default PacsQR; diff --git a/src/components/Pacs/pfdcmClient.tsx b/src/components/Pacs/pfdcmClient.tsx deleted file mode 100644 index bb5c50f9f..000000000 --- a/src/components/Pacs/pfdcmClient.tsx +++ /dev/null @@ -1,100 +0,0 @@ -import type { AxiosRequestConfig } from "axios"; -import axios from "axios"; -import React from "react"; - -export interface ImageStatusType { - title: string; - description: string; - status: string; - icon?: React.ReactNode; -} - -export interface DataFetchQuery { - SeriesInstanceUID?: string; - StudyInstanceUID?: string; - AccessionNumber?: string; -} - -class PfdcmClient { - private readonly url: string; - - constructor() { - this.url = import.meta.env.VITE_PFDCM_URL + "/" || ""; - } - - async getPacsServices(): Promise<ReadonlyArray<string>> { - try { - if (!this.url) { - throw new Error( - "Failed to find a PFDCM Service. Please use the Pacs Query Retrieve at this link: http://chris-next.tch.harvard.edu:2222", - ); - } - - const url = `${this.url}api/v1/PACSservice/list/`; - const response = await axios.get(url); - return response.data; - // setting error as unknown for better type safety - } catch (error: unknown) { - throw error; - } - } - - async find(query: any, selectedPacsService: string) { - const RequestConfig: AxiosRequestConfig = { - url: `${this.url}api/v1/PACS/sync/pypx/`, - method: "POST", - headers: { - Accept: "application/json", - "Content-Type": "application/json", - }, - data: { - PACSservice: { value: selectedPacsService }, - listenerService: { value: "default" }, - PACSdirective: query, - }, - }; - - try { - const response = (await axios(RequestConfig)).data; - - const { pypx, status } = response; - if (status) { - return pypx; - } - } catch (error: unknown) { - throw error; - } - } - - async findRetrieve(pacsService: string, query: DataFetchQuery) { - const RequestConfig: AxiosRequestConfig = { - url: `${this.url}api/v1/PACS/thread/pypx/`, - method: "POST", - timeout: 10000, //10s - timeoutErrorMessage: "Error Request Timeout out", - headers: { - Accept: "application/json", - "Content-Type": "application/json", - }, - data: { - PACSservice: { - value: pacsService, - }, - listenerService: { value: "default" }, - PACSdirective: { - ...query, - withFeedBack: true, - then: "retrieve", - }, - }, - }; - - try { - const response = await axios(RequestConfig); - return response.data.timestamp; - } catch (error: unknown) { - throw error; - } - } -} -export default PfdcmClient; diff --git a/src/components/Pacs/useSettings.tsx b/src/components/Pacs/useSettings.tsx deleted file mode 100644 index 261a95668..000000000 --- a/src/components/Pacs/useSettings.tsx +++ /dev/null @@ -1,79 +0,0 @@ -import { useQuery } from "@tanstack/react-query"; -import ChrisAPIClient from "../../api/chrisapiclient"; -import { useTypedSelector } from "../../store/hooks"; - -const useSettings = () => { - async function fetchData(username?: string | null) { - const client = ChrisAPIClient.getClient(); - const path = `${username}/uploads/config`; - const pathList = await client.getFileBrowserPath(path); - - if (!pathList) { - return null; - } - - const files = await pathList.getFiles(); - const fileItems = files.getItems(); - - if (!fileItems) { - return null; - } - - try { - // Use Promise.all to wait for all async operations to complete - const fileContents = await Promise.all( - fileItems.map(async (_file) => { - const blob = await _file.getFileBlob(); - const reader = new FileReader(); - - // Use a Promise to wait for the reader.onload to complete - const readPromise = new Promise((resolve, reject) => { - reader.onload = (e) => { - try { - const value = e.target ? e.target.result : ("{}" as any); - const contents = JSON.parse(value); - resolve(contents); - } catch (parseError: any) { - // Handle JSON parsing error - reject(new Error(`Error parsing JSON: ${parseError.message}`)); - } - }; - }); - - reader.readAsText(blob); - - // Wait for the reader.onload to complete before moving to the next file - return await readPromise; - }), - ); - - return fileContents[0]; - } catch (error: any) { - throw new Error( - error.message || "An error occurred while processing files", - ); - } - } - - const username = useTypedSelector((state) => state.user.username); - - const { - isLoading, - data, - error, - isError, - }: { - isLoading: boolean; - data?: { - [key: string]: Record<string, boolean>; - }; - error: any; - isError: boolean; - } = useQuery({ - queryKey: ["metadata"], - queryFn: async () => await fetchData(username), - }); - - return { data, isLoading, error, isError }; -}; -export default useSettings; diff --git a/src/components/Wrapper/TitleComponent.tsx b/src/components/Wrapper/TitleComponent.tsx index 152624ba1..212993640 100644 --- a/src/components/Wrapper/TitleComponent.tsx +++ b/src/components/Wrapper/TitleComponent.tsx @@ -11,6 +11,7 @@ import { import { useFetchFeed } from "../Feeds/useFetchFeed"; import { useTypedSelector } from "../../store/hooks"; import { CodeBranchIcon } from "../Icons"; +import React from "react"; const FeedsNameComponent = () => { const { feedCount, loadingFeedState } = useFeedListData(); @@ -52,6 +53,19 @@ const FeedsDetailComponent = ({ id }: { id?: string }) => { ); }; +const PacsNameComponent = () => { + return ( + <Title level={4} style={{ marginBottom: 0 }}> + PACS Query and Retrieve + + ); +}; + +const TITLE_COMPONENTS: { [key: string]: () => React.ReactElement } = { + "/feeds": () => , + "/pacs": () => , +}; + const TitleComponent = () => { const location = useLocation(); @@ -62,7 +76,8 @@ const TitleComponent = () => { return ; } - return location.pathname === "/feeds" ? : null; + const titleFn = TITLE_COMPONENTS[location.pathname]; + return titleFn && titleFn(); }; export default TitleComponent; diff --git a/src/components/NiivueDatasetViewer/cssUtils.ts b/src/cssUtils.ts similarity index 100% rename from src/components/NiivueDatasetViewer/cssUtils.ts rename to src/cssUtils.ts diff --git a/vitest.config.ts b/vitest.config.ts index dcd990ac3..23ac111d4 100644 --- a/vitest.config.ts +++ b/vitest.config.ts @@ -7,6 +7,7 @@ export default mergeConfig( test: { include: ["src/**/*.{test,spec}.?(c|m)[jt]s?(x)"], environment: "happy-dom", + setupFiles: ["./vitest.setup.ts"], restoreMocks: true, // coverage for unit testing not enabled, because we have none! @@ -15,6 +16,16 @@ export default mergeConfig( // include: ["src/**"], // reportsDirectory: "./coverage-vitest", // }, + + server: { + deps: { + inline: [ + // workaround for 'Unknown file extension ".css"' + // See https://github.com/vitest-dev/vitest/discussions/6138 + "@patternfly/react-styles", + ], + }, + }, }, }), ); diff --git a/vitest.setup.ts b/vitest.setup.ts new file mode 100644 index 000000000..7c342c0ee --- /dev/null +++ b/vitest.setup.ts @@ -0,0 +1,10 @@ +// Copied from +// https://github.com/vitest-dev/vitest/blob/7d028cb37d3e964a37899559b640bcb3a13acda7/examples/react/vitest.setup.ts + +import '@testing-library/jest-dom/vitest' +import { cleanup } from '@testing-library/react' +import { afterEach } from 'vitest' + +afterEach(() => { + cleanup() +}) From 5991eda30ad60a4e6f6f869f5712afdf0651e2ed Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Tue, 17 Sep 2024 17:39:51 -0400 Subject: [PATCH 205/337] Fix font styling conflict by antd App component --- src/App.tsx | 6 ++++-- src/app.css | 9 ++++++++- 2 files changed, 12 insertions(+), 3 deletions(-) diff --git a/src/App.tsx b/src/App.tsx index 64dfe0630..3ddd573d1 100644 --- a/src/App.tsx +++ b/src/App.tsx @@ -59,8 +59,10 @@ function App(props: AllProps) { }} > - - +
+ + +
diff --git a/src/app.css b/src/app.css index 825e3930a..80e1c8506 100644 --- a/src/app.css +++ b/src/app.css @@ -67,7 +67,7 @@ width: 20px; height: 20px; font-size:12px; - + } .large-button { @@ -83,3 +83,10 @@ justify-content: center !important; align-items: center !important; } + +.patternfly-font { + font-family: var(--pf-v5-global--FontFamily--text); + font-size: var(--pf-v5-global--FontSize--md); + line-height: var(--pf-v5-global--LineHeight--md); + font-weight: var(--pf-v5-global--FontWeight--normal); +} From a847ebc4b4ef0f05e5e2117370a2ff88d64d0a05 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 18 Sep 2024 10:12:09 -0400 Subject: [PATCH 206/337] refactor: Refactor the code for TitleComponent --- src/components/Common/index.tsx | 24 ++- src/components/ComputePage/index.tsx | 22 ++- src/components/Dashboard/index.tsx | 23 ++- src/components/DisplayPage/index.tsx | 26 +-- src/components/Feeds/FeedListView.tsx | 29 +++- src/components/Feeds/FeedView.tsx | 16 +- src/components/NewLibrary/index.tsx | 24 ++- src/components/PipelinesPage/index.tsx | 8 +- src/components/PluginCatalog/index.tsx | 25 ++- src/components/Store/index.tsx | 13 +- src/components/Wrapper/Header.tsx | 8 +- src/components/Wrapper/TitleComponent.tsx | 196 ---------------------- src/components/Wrapper/Toolbar.tsx | 8 +- src/components/Wrapper/index.tsx | 11 +- 14 files changed, 193 insertions(+), 240 deletions(-) delete mode 100644 src/components/Wrapper/TitleComponent.tsx diff --git a/src/components/Common/index.tsx b/src/components/Common/index.tsx index d2346b39e..e1a4b8053 100644 --- a/src/components/Common/index.tsx +++ b/src/components/Common/index.tsx @@ -20,6 +20,9 @@ import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; import { Alert, Popover, Spin, Typography } from "antd"; import React, { type ReactNode, useState } from "react"; import Dots from "react-activity/dist/Dots"; +import "react-activity/dist/library.css"; +import { Cookies } from "react-cookie"; +import ReactJson from "react-json-view"; import { ArchiveIcon, CubesIcon, @@ -32,9 +35,6 @@ import { InfoIcon as InfoIconComponent, SearchIcon, } from "../Icons"; -import "react-activity/dist/library.css"; -import { Cookies } from "react-cookie"; -import ReactJson from "react-json-view"; import "./common.css"; export const EmptyStateComponent = ({ title }: { title?: string }) => { @@ -435,3 +435,21 @@ export const TableEmptyState: React.FunctionComponent = ({
Data Library
); + +const { Paragraph } = Typography; + +// Component for displaying name and description +export const InfoSection: React.FC<{ + title: string; + content?: React.ReactNode; +}> = ({ title, content }) => ( + {content}} + /> +); diff --git a/src/components/ComputePage/index.tsx b/src/components/ComputePage/index.tsx index e8aa7376a..2f0455412 100644 --- a/src/components/ComputePage/index.tsx +++ b/src/components/ComputePage/index.tsx @@ -1,18 +1,32 @@ import { PageSection } from "@patternfly/react-core"; import React from "react"; -import { Typography } from "../Antd"; -import { InfoIcon } from "../Common"; +import { InfoSection } from "../Common"; import WrapperConnect from "../Wrapper"; import ComputeCatalog from "./ComputeCatalog"; -const { Paragraph } = Typography; +const TitleComponent = ( + + This page presents the available Compute environments that are + known to ChRIS. These denote computers and clusters/clouds that can be + selected to run various plugins and pipelines. The special{" "} + host environment is always available and is the actual server + that is running ChRIS. It is generally not recommended to run intensive + computation on the host environment. Adding new Compute to + ChRIS is typically enabled by using the separate ChRIS admin interface. + + } + /> +); const ComputePage = () => { React.useEffect(() => { document.title = "Compute Catalog"; }, []); return ( - + diff --git a/src/components/Dashboard/index.tsx b/src/components/Dashboard/index.tsx index 22c8d59ad..c2405164e 100644 --- a/src/components/Dashboard/index.tsx +++ b/src/components/Dashboard/index.tsx @@ -1,7 +1,9 @@ -import React from "react"; +import { CatalogTile } from "@patternfly/react-catalog-view-extension"; import { Grid, GridItem, PageSection } from "@patternfly/react-core"; +import React from "react"; +import BUILD_VERSION from "../../getBuildVersion"; +import { InfoSection } from "../Common"; import WrapperConnect from "../Wrapper"; -import { CatalogTile } from "@patternfly/react-catalog-view-extension"; import "./dashboard.css"; const DashboardPage = () => { @@ -9,8 +11,23 @@ const DashboardPage = () => { document.title = "Overview"; }, []); + const TitleComponent = ( + + Retrieve, analyze, and visualize any data using a powerful + cloud computing platform: ChRIS. Let's get started. +

+ Build: {BUILD_VERSION} +

+ + } + /> + ); + return ( - + diff --git a/src/components/DisplayPage/index.tsx b/src/components/DisplayPage/index.tsx index aa183f7d6..862ea2374 100644 --- a/src/components/DisplayPage/index.tsx +++ b/src/components/DisplayPage/index.tsx @@ -1,22 +1,22 @@ -import React from "react"; -import { PluginMeta } from "@fnndsc/chrisapi"; +import type { PluginMeta } from "@fnndsc/chrisapi"; import { - Pagination, - Grid, - TextInput, - GridItem, - Dropdown, - MenuToggle, - DropdownItem, - DropdownList, Badge, Card, CardBody, + Dropdown, + DropdownItem, + DropdownList, + Grid, + GridItem, + MenuToggle, + Pagination, Split, SplitItem, + TextInput, } from "@patternfly/react-core"; -import { Link } from "react-router-dom"; import { format } from "date-fns"; +import React from "react"; +import { Link } from "react-router-dom"; import { EmptyStateComponent, SpinContainer } from "../Common"; import { SearchIcon } from "../Icons"; import "./display-page.css"; @@ -101,8 +101,8 @@ const DisplayPage = ({ }: DisplayPageInterface) => { const { perPage, page, itemCount } = pageState; const [isDropdownOpen, setIsDropdownOpen] = React.useState(false); - const isPlugin = title === "Plugins" ? true : false; - const isCompute = title === "Compute" ? true : false; + const isPlugin = title === "Plugins"; + const isCompute = title === "Compute"; const [dropdownValue, setDropdownValue] = React.useState( isPlugin ? PluginQueryTypes.NAME[0] : ComputeQueryTypes.NAME[0], ); diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index bd8d6892d..b87d77ecb 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -14,8 +14,15 @@ import { type ToggleGroupItemProps, Tooltip, } from "@patternfly/react-core"; -import { Table, Tbody, Td, Th, Thead, Tr } from "@patternfly/react-table"; -import { SortByDirection } from "@patternfly/react-table"; +import { + SortByDirection, + Table, + Tbody, + Td, + Th, + Thead, + Tr, +} from "@patternfly/react-table"; import { useQueries } from "@tanstack/react-query"; import { format } from "date-fns"; import { debounce } from "lodash"; @@ -25,6 +32,7 @@ import { useNavigate } from "react-router"; import { useTypedSelector } from "../../store/hooks"; import { AddNodeProvider } from "../AddNode/context"; import { Typography } from "../Antd"; +import { InfoSection } from "../Common"; import CreateFeed from "../CreateFeed/CreateFeed"; import { CreateFeedProvider } from "../CreateFeed/context"; import { ThemeContext } from "../DarkTheme/useTheme"; @@ -227,8 +235,23 @@ const TableSelectable: React.FC = () => { ); }; + const feedCountText = + !feedCount && loadingFeedState + ? "Fetching..." + : feedCount === -1 + ? 0 + : feedCount; + const TitleComponent = ( + + ); + return ( - +
{ const drawerState = useTypedSelector((state) => state.drawers); @@ -141,8 +146,17 @@ const FeedView: React.FC = () => { ); + const TitleComponent = ( + + <CodeBranchIcon style={{ marginRight: "0.25em" }} /> + <Tooltip content={feed?.data.name}> + <span>{feed ? elipses(feed?.data.name, 40) : ""}</span> + </Tooltip> + + ); + return ( - + {contextHolder} { return null; } + // Library name component + + const TitleComponent = ( + + The Library provides a card-focused mechanism for browsing, viewing, + and interacting with data in the ChRIS system. A card is analogous to + a file or folder in a conventional filesystem, and multiple cards can + be grouped into a shopping cart to allow for bulk operations. Simply + long press and release a card to add it to the cart. Bulk operations + include: Download (which will copy all cart contents to your + local filesystem), Delete (which will permanently remove all + data in the cards from ChRIS), and Create which will seed a new + analysis with a new root node containing each card as a subdirectory. + + } + /> + ); + return ( - + { React.useEffect(() => { document.title = "Pipelines Catalog"; }, []); return ( - + }> diff --git a/src/components/PluginCatalog/index.tsx b/src/components/PluginCatalog/index.tsx index e2e82c717..84ddf68db 100644 --- a/src/components/PluginCatalog/index.tsx +++ b/src/components/PluginCatalog/index.tsx @@ -1,16 +1,37 @@ +import { PageSection } from "@patternfly/react-core"; import React from "react"; import WrapperConnect from "../Wrapper"; import PluginCatalog from "./PluginCatalog"; -import { PageSection } from "@patternfly/react-core"; import "./plugin-catalog.css"; +import { InfoSection } from "../Common"; const CatalogPage = () => { React.useEffect(() => { document.title = "Analysis Catalog"; }, []); + const TitleComponent = ( + + ChRIS is a platform that runs Plugins. A plugin is a single + application (similar to apps on a mobile device). Examples of + ChRIS Plugins are applications that analyze images (like{" "} + pl-fshack that runs + a neuro image analysis program called{" "} + FreeSurfer). Other{" "} + Plugins perform operations like zipping files, converting + medical images from DICOM to jpg, etc. On this page you can browse{" "} + Plugins available for you to use. For more options, consult the{" "} + ChRIS store. + + } + /> + ); + return ( - + diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index 2e2e9daeb..49b3b75f3 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -37,12 +37,13 @@ import { Alert, Spin, notification } from "../Antd"; import { SpinContainer } from "../Common"; import { CheckCircleIcon, SearchIcon } from "../Icons"; import "../SinglePlugin/singlePlugin.css"; -import WrapperConnect from "../Wrapper"; +import { InfoSection } from "../Common"; import { fetchPluginForMeta, fetchPluginMetas, handleInstallPlugin, } from "../PipelinesCopy/utils"; +import WrapperConnect from "../Wrapper"; const Store = () => { const isStaff = useTypedSelector((state) => state.user.isStaff); @@ -216,8 +217,16 @@ const Store = () => { } }, [handleInstallMutation.isSuccess, handleInstallMutation.isError, api]); + // Store catalog component + const TitleComponent = ( + + ); + return ( - + {contextHolder} void; + titleComponent?: React.ReactElement; } export default function Header(props: IHeaderProps) { @@ -24,7 +26,11 @@ export default function Header(props: IHeaderProps) { }; const pageToolbar = ( - + ); return ( diff --git a/src/components/Wrapper/TitleComponent.tsx b/src/components/Wrapper/TitleComponent.tsx deleted file mode 100644 index 474a24d85..000000000 --- a/src/components/Wrapper/TitleComponent.tsx +++ /dev/null @@ -1,196 +0,0 @@ -import { Tooltip } from "@patternfly/react-core"; -import { Typography } from "antd"; -import { matchPath, useLocation } from "react-router"; -import { elipses } from "../../api/common"; -import BUILD_VERSION from "../../getBuildVersion"; -import { useTypedSelector } from "../../store/hooks"; -import { InfoIcon } from "../Common"; -import { - useFeedListData, - useSearchQueryParams, -} from "../Feeds/useFeedListData"; -import { useFetchFeed } from "../Feeds/useFetchFeed"; -import { CodeBranchIcon } from "../Icons"; - -const { Paragraph, Title } = Typography; - -// Component for displaying name and description -const InfoSection: React.FC<{ title: string; content: React.ReactNode }> = ({ - title, - content, -}) => ( - {content}} - /> -); - -// Feeds name component -const FeedsNameComponent: React.FC = () => { - const { feedCount, loadingFeedState } = useFeedListData(); - const feedCountText = - !feedCount && loadingFeedState - ? "Fetching..." - : feedCount === -1 - ? 0 - : feedCount; - - return ( - - ); -}; - -// Library name component -const LibraryNameComponent: React.FC = () => ( - - The Library provides a card-focused mechanism for browsing, viewing, and - interacting with data in the ChRIS system. A card is analogous to a file - or folder in a conventional filesystem, and multiple cards can be - grouped into a shopping cart to allow for bulk operations. Simply long - press and release a card to add it to the cart. Bulk operations include:{" "} - Download (which will copy all cart contents to your local - filesystem), Delete (which will permanently remove all data in - the cards from ChRIS), and Create which will seed a new analysis - with a new root node containing each card as a subdirectory. - - } - /> -); - -// Overview name component -const OverviewNameComponent: React.FC = () => ( - - Retrieve, analyze, and visualize any data using a powerful cloud - computing platform: ChRIS. Let's get started. -

- Build: {BUILD_VERSION} -

- - } - /> -); - -// Plugin catalog component -const PluginCatalogComponent: React.FC = () => ( - - ChRIS is a platform that runs Plugins. A plugin is a single - application (similar to apps on a mobile device). Examples of - ChRIS Plugins are applications that analyze images (like{" "} - pl-fshack that runs a - neuro image analysis program called{" "} - FreeSurfer). Other{" "} - Plugins perform operations like zipping files, converting medical - images from DICOM to jpg, etc. On this page you can browse{" "} - Plugins available for you to use. For more options, consult the{" "} - ChRIS store. - - } - /> -); - -// Compute catalog component -const ComputeCatalogComponent: React.FC = () => ( - - This page presents the available Compute environments that are - known to ChRIS. These denote computers and clusters/clouds that can be - selected to run various plugins and pipelines. The special{" "} - host environment is always available and is the actual server - that is running ChRIS. It is generally not recommended to run intensive - computation on the host environment. Adding new Compute to - ChRIS is typically enabled by using the separate ChRIS admin interface. - - } - /> -); - -// Pipeline catalog component -const PipelineCatalogComponent: React.FC = () => ( - - Pipelines - -); - -// Store catalog component -const StoreCatalogComponent: React.FC = () => ( - -); - -// Configuration for path mappings -const pathToComponentMap: Record = { - "/feeds": FeedsNameComponent, - "/": OverviewNameComponent, - "/catalog": PluginCatalogComponent, - "/compute": ComputeCatalogComponent, - "/pipelines": PipelineCatalogComponent, - "/store": StoreCatalogComponent, -}; - -// Feeds detail component -const FeedsDetailComponent: React.FC<{ id?: string }> = ({ id }) => { - const query = useSearchQueryParams(); - const type = query.get("type"); - const isLoggedIn = useTypedSelector((state) => state.user.isLoggedIn); - - const { feed } = useFetchFeed(id, type, isLoggedIn); - - if (!feed) { - return null; - } - - return ( - - <CodeBranchIcon style={{ marginRight: "0.25em" }} /> - <Tooltip content={feed?.data.name}> - <span>{elipses(feed?.data.name, 40)}</span> - </Tooltip> - - ); -}; - -// Title component to dynamically map location to the appropriate component -const TitleComponent: React.FC = () => { - const location = useLocation(); - - // Check if the current location matches specific paths - const feedMatch = matchPath("/feeds/:id", location.pathname); - const libraryMatch = matchPath("/library/*", location.pathname); - - if (feedMatch) { - const { id } = feedMatch.params; - return ; - } - - if (libraryMatch) { - return ; - } - - const Component = pathToComponentMap[location.pathname]; - return Component ? : null; -}; - -export default TitleComponent; diff --git a/src/components/Wrapper/Toolbar.tsx b/src/components/Wrapper/Toolbar.tsx index e1255c86a..d39ee07e2 100644 --- a/src/components/Wrapper/Toolbar.tsx +++ b/src/components/Wrapper/Toolbar.tsx @@ -20,17 +20,17 @@ import { ThemeContext } from "../DarkTheme/useTheme"; import FeedDetails from "../FeedDetails"; import CartNotify from "./CartNotify"; import { clearCartOnLogout } from "../../store/cart/cartSlice"; -import TitleComponent from "./TitleComponent"; type ToolbarComponentProps = { showToolbar: boolean; + titleComponent?: React.ReactElement; token?: string | null; }; const ToolbarComponent: React.FC = ( props: ToolbarComponentProps, ) => { - const { token } = props; + const { token, titleComponent } = props; const dispatch = useDispatch(); const drawerState = useTypedSelector((state) => state.drawers); const fullScreen = drawerState?.preview.open && drawerState.preview.maximized; @@ -92,9 +92,7 @@ const ToolbarComponent: React.FC = ( width: "100%", }} > - - - + {titleComponent && titleComponent} {/* Center */} {props.showToolbar && !fullScreen && } diff --git a/src/components/Wrapper/index.tsx b/src/components/Wrapper/index.tsx index 68b92d932..612b09291 100644 --- a/src/components/Wrapper/index.tsx +++ b/src/components/Wrapper/index.tsx @@ -9,10 +9,11 @@ import { setIsNavOpen } from "../../store/ui/uiSlice"; type WrapperProps = { children: React.ReactElement[] | React.ReactElement; + titleComponent?: React.ReactElement; }; const Wrapper = (props: WrapperProps) => { - const { children } = props; + const { children, titleComponent } = props; const dispatch = useDispatch(); const { isNavOpen, sidebarActiveItem } = useTypedSelector( (state) => state.ui, @@ -47,7 +48,13 @@ const Wrapper = (props: WrapperProps) => { return ( } + header={ +
+ } sidebar={sidebar} > {" "} From bb5b3fdab5d282a15649e78573db4ec3b5522198 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 18 Sep 2024 14:29:36 -0400 Subject: [PATCH 207/337] feat: Rename Files, Folders and Links --- .../NewLibrary/components/ContextMenu.tsx | 6 +- .../NewLibrary/components/LibraryTable.tsx | 1 + .../NewLibrary/components/Operations.tsx | 6 +- .../NewLibrary/utils/useOperations.tsx | 86 ++++++++++++++----- 4 files changed, 75 insertions(+), 24 deletions(-) diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index c8cbbf61e..9152fd7d7 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -48,7 +48,6 @@ export const FolderContextMenu = (props: ContextMenuProps) => { key: "rename", label: "Rename", icon: , - disabled: !isFeedsTable, }, { key: "delete", label: "Delete", icon: }, ]; @@ -57,7 +56,10 @@ export const FolderContextMenu = (props: ContextMenuProps) => { <> setModalState({ isOpen: false, type: "" })} + onClose={() => { + handleModalSubmitMutation.reset(); + setModalState({ isOpen: false, type: "" }); + }} onSubmit={(inputValue, additionalValues) => handleModalSubmitMutation.mutate({ inputValue, diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 14881de07..a2be4e652 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -148,6 +148,7 @@ const BaseRow: React.FC = ({ additionalKeys: [computedPath], }} key={path} + computedPath={computedPath} > handleOperations(operationKey)} variant="tertiary" aria-label={ariaLabel} - isDisabled={operationKey === "rename" && !isFeedsTable} /> ); @@ -222,7 +221,10 @@ const Operations = ({ <> setModalState({ isOpen: false, type: "" })} + onClose={() => { + handleModalSubmitMutation.reset(); + setModalState({ isOpen: false, type: "" }); + }} onSubmit={(inputValue, additionalValues) => handleModalSubmitMutation.mutate({ inputValue, additionalValues }) } diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index 35007ccc1..e5a7120b3 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -1,5 +1,7 @@ import type { FileBrowserFolder, + FileBrowserFolderFile, + FileBrowserFolderLinkFile, FileBrowserFolderList, } from "@fnndsc/chrisapi"; import { useMutation } from "@tanstack/react-query"; @@ -169,30 +171,74 @@ export const useFolderOperations = ( } }; - const renameFolder = async (inputValue: string) => { + const renameFolder = async (inputValue: string): Promise => { handleOrigin(origin); - if (createFeed) { - // Renaming a feed - for (const { payload } of selectedPaths) { - try { - // This code is temporary - const fileName = getFolderName( - payload as FileBrowserFolder, - payload.data.path, - ); - const feed = await fetchFeedForPath(fileName); - if (feed) { - await feed.put({ - name: inputValue, - }); - } - } catch (error: any) { - const error_message = catchError(error).error_message; - throw new Error(error_message); + + for (const { payload, type } of selectedPaths) { + try { + if (createFeed) { + await handleFeedCreation(payload as FileBrowserFolder, inputValue); + } else { + await handlePathRename(payload, type, inputValue); } + } catch (error) { + handleRenameError(error); } - invalidateQueries(); } + + invalidateQueries(); + }; + + const handleFeedCreation = async ( + payload: FileBrowserFolder, + inputValue: string, + ): Promise => { + const fileName = getFolderName(payload, payload.data.path); + const feed = await fetchFeedForPath(fileName); + if (feed) { + await feed.put({ name: inputValue }); + } + }; + + const handlePathRename = async ( + payload: + | FileBrowserFolder + | FileBrowserFolderFile + | FileBrowserFolderLinkFile, + type: string, + inputValue: string, + ): Promise => { + const newPath = `${computedPath}/${inputValue}`; + switch (type) { + case "folder": + await (payload as FileBrowserFolder).put({ + //@ts-ignore + path: newPath, + }); + break; + case "file": + await (payload as FileBrowserFolderFile).put({ + new_file_path: newPath, + }); + break; + case "link": + await (payload as FileBrowserFolderLinkFile).put({ + new_link_file_path: newPath, + }); + break; + default: + throw new Error(`Unsupported type: ${type}`); + } + }; + + const handleRenameError = (error: any): void => { + if (error.response?.data) { + const { path, new_link_file_path, new_file_path } = error.response.data; + if (path) throw new Error(path[0]); + if (new_link_file_path) throw new Error(new_link_file_path[0]); + if (new_file_path) throw new Error(new_file_path); + } + throw error; // If it's not a known error, rethrow it }; const handleModalSubmit = async ( From fb1e3042065bce4ab37edb93ab52f28a215b5655 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 18 Sep 2024 15:12:19 -0400 Subject: [PATCH 208/337] feat: Update data fetching and error handling in the Library Table --- .../FeedOutputBrowser/FileBrowser.tsx | 13 +- .../NewLibrary/components/LibraryTable.tsx | 22 +- .../NewLibrary/components/Operations.tsx | 2 +- src/components/NewLibrary/index.tsx | 207 ++++++++---------- .../NewLibrary/utils/useOperations.tsx | 8 +- 5 files changed, 122 insertions(+), 130 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 95dc6f85c..d997430b0 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -183,6 +183,11 @@ const FileBrowser = (props: FileBrowserProps) => { ); + const origin = { + type: OperationContext.FILEBROWSER, + additionalKeys: [additionalKey], + }; + return ( {contextHolder} @@ -205,10 +210,7 @@ const FileBrowser = (props: FileBrowserProps) => { @@ -268,6 +270,7 @@ const FileBrowser = (props: FileBrowserProps) => { !drawerState.preview.open && dispatch(setFilePreviewPanel()); }} + origin={origin} /> ); })} @@ -289,6 +292,7 @@ const FileBrowser = (props: FileBrowserProps) => { handleFileClick={() => { handleFileClick(resource.data.path); }} + origin={origin} /> ); }, @@ -311,6 +315,7 @@ const FileBrowser = (props: FileBrowserProps) => { handleFileClick={() => { return; }} + origin={origin} /> ); })} diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index a2be4e652..4b70395b4 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -69,6 +69,10 @@ interface RowProps { computedPath: string; handleFolderClick: () => void; handleFileClick: () => void; + origin: { + type: OperationContext; + additionalKeys: string[]; + }; } const BaseRow: React.FC = ({ @@ -82,6 +86,7 @@ const BaseRow: React.FC = ({ computedPath, handleFolderClick, handleFileClick, + origin, }) => { const { handlers } = useLongPress(); const { handleOnClick, handleCheckboxChange } = handlers; @@ -142,14 +147,7 @@ const BaseRow: React.FC = ({ : resource.data.fname; return ( - + = ({ } }; + const origin = { + type: OperationContext.LIBRARY, + additionalKeys: [computedPath], + }; + return ( = ({ handleFileClick={() => { return; }} + origin={origin} /> ))} {data.files.map((resource: FileBrowserFolderFile, index) => ( @@ -381,6 +385,7 @@ const LibraryTable: React.FC = ({ handleFileClick={() => { handleFileClick(resource); }} + origin={origin} /> ))} {data.linkFiles.map((resource: FileBrowserFolderLinkFile, index) => ( @@ -399,6 +404,7 @@ const LibraryTable: React.FC = ({ handleFileClick={() => { navigate(resource.data.path); }} + origin={origin} /> ))} diff --git a/src/components/NewLibrary/components/Operations.tsx b/src/components/NewLibrary/components/Operations.tsx index f8b474196..42f955c30 100644 --- a/src/components/NewLibrary/components/Operations.tsx +++ b/src/components/NewLibrary/components/Operations.tsx @@ -428,7 +428,7 @@ export const AddModal = ({ )} {indicators.isError && ( - throw e; + errorMessages.push("Failed to load folder list."); + return { errorMessages }; // return errors in case the request fails entirely } } const NewLibrary = () => { + const [api, contextHolder] = notification.useNotification(); const { pathname } = useLocation(); const navigate = useNavigate(); const [pageNumber, setPageNumber] = useState(1); @@ -107,7 +127,7 @@ const NewLibrary = () => { structuralSharing: true, }); - // Redirect to /library/home/username if the pathname is /library and this is the first load of the page + // Redirect to /library/home/username if the pathname is /library and this is the first load of the page useEffect(() => { if (isFirstLoad && pathname === "/library") { navigate(`/library/home/${username}`, { replace: true }); @@ -115,53 +135,38 @@ const NewLibrary = () => { } }, [isFirstLoad, pathname, username, navigate]); - const fetchMore = - data?.foldersPagination.hasNextPage || - data?.filesPagination.hasNextPage || - data?.linksPagination.hasNextPage; - - // Set up an intersection observer to load more data when the user scrolls to the bottom of the page + // Show error notifications useEffect(() => { - const observer = new IntersectionObserver( - (entries) => { - if (entries[0].isIntersecting && fetchMore) { - handlePagination(); - } - }, - { threshold: 0.5 }, - ); - - if (observerTarget.current) { - observer.observe(observerTarget.current); + if (data?.errorMessages && data.errorMessages.length > 0) { + data.errorMessages.forEach((msg: string) => { + api.error({ + message: "Error", + description: msg, + }); + }); } + }, [data?.errorMessages]); - return () => { - if (observerTarget.current) { - observer.unobserve(observerTarget.current); - } - }; - }, [fetchMore]); + const fetchMore = + data?.foldersPagination?.hasNextPage || + data?.filesPagination?.hasNextPage || + data?.linksPagination?.hasNextPage; - // Debounce the folder click event to avoid multiple clicks const handleFolderClick = debounce((folder: string) => { const url = `${decodedPath}/${folder}`; navigate(url); }, 500); - // Handle pagination by incrementing the page number const handlePagination = () => { setPageNumber((prevState) => prevState + 1); }; const observerTarget = useRef(null); - // Prevent initial render if redirecting if (isFirstLoad && pathname === "/library") { return null; } - // Library name component - const TitleComponent = ( { The Library provides a card-focused mechanism for browsing, viewing, and interacting with data in the ChRIS system. A card is analogous to a file or folder in a conventional filesystem, and multiple cards can - be grouped into a shopping cart to allow for bulk operations. Simply - long press and release a card to add it to the cart. Bulk operations - include: Download (which will copy all cart contents to your - local filesystem), Delete (which will permanently remove all - data in the cards from ChRIS), and Create which will seed a new - analysis with a new root node containing each card as a subdirectory. + be grouped into a shopping cart to allow for bulk operations. } /> @@ -183,11 +183,8 @@ const NewLibrary = () => { return ( - + {contextHolder} + { }} computedPath={computedPath} folderList={data?.folderList} - customStyle={{ toolbarItem: { paddingInlineStart: "0" } }} /> - { @@ -210,14 +205,12 @@ const NewLibrary = () => { {isFetching && } {isError && } - {/* Render based on currentLayout */} {currentLayout === "list" ? ( <> - {data && - data.subFoldersMap.length === 0 && - data.linkFilesMap.length === 0 && - data.filesMap.length === 0 ? ( + {data?.subFoldersMap?.length === 0 && + data?.linkFilesMap?.length === 0 && + data?.filesMap?.length === 0 ? ( ) : ( <> @@ -231,7 +224,6 @@ const NewLibrary = () => { computedPath={computedPath} fetchMore={fetchMore} handlePagination={handlePagination} - filesLoading={isFetching} /> {fetchMore && !isFetching && ( )}
)} ) : ( - <> - {data && - data.subFoldersMap.length === 0 && - data.linkFilesMap.length === 0 && - data.filesMap.length === 0 ? ( - - ) : ( - - - - - {fetchMore && !isFetching && ( - - )} -
- + + + + + {fetchMore && !isFetching && ( + )} - +
+ )} diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index e5a7120b3..68a5e88dc 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -8,8 +8,9 @@ import { useMutation } from "@tanstack/react-query"; import { useRef, useState } from "react"; import { useDispatch } from "react-redux"; import ChrisAPIClient from "../../../api/chrisapiclient"; -import { catchError, getFileName } from "../../../api/common"; +import { getFileName } from "../../../api/common"; import { + clearSelectedPaths, setToggleCart, startAnonymize, startDownload, @@ -209,6 +210,8 @@ export const useFolderOperations = ( inputValue: string, ): Promise => { const newPath = `${computedPath}/${inputValue}`; + const oldPath = type === "folder" ? payload.data.path : payload.data.fname; + switch (type) { case "folder": await (payload as FileBrowserFolder).put({ @@ -229,6 +232,7 @@ export const useFolderOperations = ( default: throw new Error(`Unsupported type: ${type}`); } + dispatch(clearSelectedPaths(oldPath)); }; const handleRenameError = (error: any): void => { @@ -238,7 +242,7 @@ export const useFolderOperations = ( if (new_link_file_path) throw new Error(new_link_file_path[0]); if (new_file_path) throw new Error(new_file_path); } - throw error; // If it's not a known error, rethrow it + throw new Error("Failed to rename this folder"); // If it's not a known error, rethrow it }; const handleModalSubmit = async ( From d44f3874087c8544523ecb6575d24bcb541a59d3 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 19 Sep 2024 08:57:14 -0400 Subject: [PATCH 209/337] feat: Update the renaming of files and folders in the card view --- src/components/NewLibrary/components/FileCard.tsx | 3 ++- src/components/NewLibrary/components/FolderCard.tsx | 1 + 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/src/components/NewLibrary/components/FileCard.tsx b/src/components/NewLibrary/components/FileCard.tsx index eaa0a3513..068c80e58 100644 --- a/src/components/NewLibrary/components/FileCard.tsx +++ b/src/components/NewLibrary/components/FileCard.tsx @@ -56,6 +56,7 @@ type ComponentProps = { const PresentationComponent: React.FC = ({ name, origin, + computedPath, date, onClick, onNavigate, @@ -67,7 +68,7 @@ const PresentationComponent: React.FC = ({ bgRow, }) => ( - + = (props) => { type: OperationContext.LIBRARY, additionalKeys: [computedPath], }} + computedPath={computedPath} > Date: Thu, 19 Sep 2024 09:06:18 -0400 Subject: [PATCH 210/337] refactor: Cleanup --- src/components/FeedOutputBrowser/FileBrowser.tsx | 6 +++--- src/components/FeedOutputBrowser/types.ts | 6 +++--- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index d997430b0..27c73910b 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -248,7 +248,7 @@ const FileBrowser = (props: FileBrowserProps) => { - {filesMap.map((resource: FileBrowserFolderFile, index) => { + {filesMap?.map((resource: FileBrowserFolderFile, index) => { return ( { /> ); })} - {linkFilesMap.map( + {linkFilesMap?.map( (resource: FileBrowserFolderLinkFile, index) => { return ( { }, )} - {subFoldersMap.map((resource: FileBrowserFolder, index) => { + {subFoldersMap?.map((resource: FileBrowserFolder, index) => { return ( Date: Thu, 19 Sep 2024 09:23:30 -0400 Subject: [PATCH 211/337] feat: Update download saga to remove hard coded lookup for zip file --- src/store/cart/downloadSaga.ts | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/src/store/cart/downloadSaga.ts b/src/store/cart/downloadSaga.ts index 2f9d68e36..5bfa2daf6 100644 --- a/src/store/cart/downloadSaga.ts +++ b/src/store/cart/downloadSaga.ts @@ -179,7 +179,12 @@ function* downloadFolder( if (!fileItems) { throw new Error("Failed to find the zip file"); } - const fileToZip = fileItems[0]; + const fileToZip = fileItems.find((file) => + file.data.fname.endsWith(".zip"), + ); + if (!fileToZip) { + throw new Error("Failed to find a .zip file in the folder"); + } yield downloadFile(fileToZip); } else { throw new Error(`Failed to find a folder for this path: ${filePath}`); From c375e6d2f2f4b9e290ce41e79081fdf377f4aff9 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 19 Sep 2024 09:46:22 -0400 Subject: [PATCH 212/337] refactor: Cleanup code --- src/components/CreateFeed/BasicInformation.tsx | 11 +++-------- .../SinglePlugin/PluginCatalogComponents.tsx | 10 +++------- src/components/SinglePlugin/index.tsx | 3 ++- 3 files changed, 8 insertions(+), 16 deletions(-) diff --git a/src/components/CreateFeed/BasicInformation.tsx b/src/components/CreateFeed/BasicInformation.tsx index ff2599480..6da03d8c2 100644 --- a/src/components/CreateFeed/BasicInformation.tsx +++ b/src/components/CreateFeed/BasicInformation.tsx @@ -1,10 +1,5 @@ -import React, { - useState, - useEffect, - useContext, - useRef, - useCallback, -} from "react"; +import type React from "react"; +import { useState, useEffect, useContext, useRef, useCallback } from "react"; import { Form, FormGroup, @@ -14,7 +9,7 @@ import { } from "@patternfly/react-core"; import { Typeahead } from "react-bootstrap-typeahead"; import { CreateFeedContext } from "./context"; -import { Tag } from "@fnndsc/chrisapi"; +import type { Tag } from "@fnndsc/chrisapi"; import { Types } from "./types/feed"; import { fetchTagList } from "./utils"; diff --git a/src/components/SinglePlugin/PluginCatalogComponents.tsx b/src/components/SinglePlugin/PluginCatalogComponents.tsx index 44f97d1dd..5c7c09648 100644 --- a/src/components/SinglePlugin/PluginCatalogComponents.tsx +++ b/src/components/SinglePlugin/PluginCatalogComponents.tsx @@ -1,4 +1,4 @@ -import { Plugin, PluginInstance, PluginMeta } from "@fnndsc/chrisapi"; +import type { Plugin, PluginInstance, PluginMeta } from "@fnndsc/chrisapi"; import { ActionGroup, Badge, @@ -145,9 +145,7 @@ export const DropdownPluginVersions = ({ key={plugin.data.id} name={plugin.data.version} value={plugin.data.version} - autoFocus={ - plugin.data.version === parameterPayload?.version ? true : false - } + autoFocus={plugin.data.version === parameterPayload?.version} > {plugin.data.version} @@ -293,9 +291,7 @@ export const HeaderCardPlugin = ({ Resources}> {parameterPayload && ( - <> - - + )} diff --git a/src/components/SinglePlugin/index.tsx b/src/components/SinglePlugin/index.tsx index 99164587b..0fea0ed7a 100644 --- a/src/components/SinglePlugin/index.tsx +++ b/src/components/SinglePlugin/index.tsx @@ -170,6 +170,8 @@ const SinglePlugin = () => { {isLoading || isFetching ? ( + ) : isError ? ( + ) : data ? ( <> @@ -185,7 +187,6 @@ const SinglePlugin = () => { ) : ( )} - {isError && } ); }; From d689af0003fc806ca451629e4a32a5b241a82398 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 19 Sep 2024 10:07:02 -0400 Subject: [PATCH 213/337] feat: Disallow folder uploads when the file upload option is selected --- .../NewLibrary/utils/useOperations.tsx | 18 +++++++++++++++--- 1 file changed, 15 insertions(+), 3 deletions(-) diff --git a/src/components/NewLibrary/utils/useOperations.tsx b/src/components/NewLibrary/utils/useOperations.tsx index 68a5e88dc..dde51ca2a 100644 --- a/src/components/NewLibrary/utils/useOperations.tsx +++ b/src/components/NewLibrary/utils/useOperations.tsx @@ -26,6 +26,7 @@ import { type OriginState, useOperationsContext } from "../context"; import useDeletePayload from "../utils/useDeletePayload"; import { fetchFeedForPath } from "./longpress"; import useFeedOperations from "./useFeedOperations"; +import { isEmpty } from "lodash"; export interface ModalState { type: string; @@ -83,16 +84,27 @@ export const useFolderOperations = ( isFolder: boolean, name?: string, ) => { + // Process the origin data if applicable handleOrigin(origin); + // Convert selected files to an array for easier manipulation const files = Array.from(event.target.files || []); + // Check if the input is a file selection, but a folder was mistakenly uploaded + if (!isFolder && files.length > 0 && isEmpty(files[0].type)) { + alert( + "Folder selection is not allowed in file upload mode. Please select files only.", + ); + resetInputField(fileInputRef); // Clean up file input + return; + } + // Generate a unique name based on the timestamp and the provided name (if any) const uniqueName = name ? `${name}_${getCurrentTimestamp()}` : getCurrentTimestamp(); - + // Determine the upload path based on the user's preferences (creating a new feed or using an existing path) const uploadPath = createFeed ? `home/${username}/uploads/${uniqueName}` : computedPath; - + // Dispatch the upload action with all relevant details dispatch( startUpload({ files, @@ -103,7 +115,7 @@ export const useFolderOperations = ( nameForFeed: name, }), ); - + // Reset the input field after each upload to allow for subsequent uploads resetInputField(isFolder ? folderInputRef : fileInputRef); }; From a79c0467f51b455ad4f3ce016e241b1915962795 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 19 Sep 2024 10:29:39 -0400 Subject: [PATCH 214/337] refactor: Cleanup --- .../NewLibrary/components/LibraryTable.tsx | 34 +++---------------- .../utils/useNewResourceHighlight.tsx | 33 ++++++++++++++++++ 2 files changed, 38 insertions(+), 29 deletions(-) create mode 100644 src/components/NewLibrary/utils/useNewResourceHighlight.tsx diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 4b70395b4..23a9f5e5a 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -17,8 +17,8 @@ import { Tr, } from "@patternfly/react-table"; import { Drawer, Tag } from "antd"; -import { differenceInSeconds, format } from "date-fns"; -import React, { useContext, useEffect, useRef, useState } from "react"; +import { format } from "date-fns"; +import React, { useContext, useState } from "react"; import { useNavigate } from "react-router"; import { useTypedSelector } from "../../../store/hooks"; import { getIcon } from "../../Common"; @@ -30,6 +30,7 @@ import useLongPress, { getBackgroundRowColor, useAssociatedFeed, } from "../utils/longpress"; +import useNewResourceHighlight from "../utils/useNewResourceHighlight"; import { FolderContextMenu } from "./ContextMenu"; import { getFileName, getLinkFileName } from "./FileCard"; import { getFolderName } from "./FolderCard"; @@ -92,28 +93,7 @@ const BaseRow: React.FC = ({ const { handleOnClick, handleCheckboxChange } = handlers; const selectedPaths = useTypedSelector((state) => state.cart.selectedPaths); const isDarkTheme = useContext(ThemeContext).isDarkTheme; - const rowRef = useRef(null); // Create a ref for the row - - const secondsSinceCreation = differenceInSeconds(new Date(), new Date(date)); - const [isNewResource, setIsNewResource] = useState( - secondsSinceCreation <= 15, - ); - - useEffect(() => { - if (isNewResource && rowRef.current) { - rowRef.current.scrollIntoView({ - behavior: "smooth", - block: "center", - }); - - const timeoutId = setTimeout(() => { - setIsNewResource(false); - }, 10000); - - return () => clearTimeout(timeoutId); - } - }, [isNewResource]); - + const { isNewResource, scrollToNewResource } = useNewResourceHighlight(date); const isSelected = selectedPaths.length > 0 && selectedPaths.some((payload) => { @@ -124,13 +104,11 @@ const BaseRow: React.FC = ({ return payload.path === resource.data.fname; } }); - const shouldHighlight = isNewResource || isSelected; const highlightedBgRow = getBackgroundRowColor(shouldHighlight, isDarkTheme); const icon = getIcon(type, isDarkTheme, { marginRight: "0.5em", }); - const handleItem = () => { if (type === "folder") { handleFolderClick(); @@ -140,16 +118,14 @@ const BaseRow: React.FC = ({ handleFileClick(); } }; - const path = type === "folder" || type === "link" ? resource.data.path : resource.data.fname; - return ( { e.stopPropagation(); diff --git a/src/components/NewLibrary/utils/useNewResourceHighlight.tsx b/src/components/NewLibrary/utils/useNewResourceHighlight.tsx new file mode 100644 index 000000000..ca6525822 --- /dev/null +++ b/src/components/NewLibrary/utils/useNewResourceHighlight.tsx @@ -0,0 +1,33 @@ +import { useRef, useState, useEffect } from "react"; +import { differenceInSeconds } from "date-fns"; + +// Custom hook to handle new resource highlighting +const useNewResourceHighlight = (creationDate: string) => { + const rowRef = useRef(null); + const secondsSinceCreation = differenceInSeconds( + new Date(), + new Date(creationDate), + ); + const [isNewResource, setIsNewResource] = useState( + secondsSinceCreation <= 15, + ); + + useEffect(() => { + if (isNewResource && rowRef.current) { + rowRef.current.scrollIntoView({ + behavior: "smooth", + block: "center", + }); + + const timeoutId = setTimeout(() => { + setIsNewResource(false); + }, 10000); + + return () => clearTimeout(timeoutId); + } + }, [isNewResource]); + + return { isNewResource, scrollToNewResource: rowRef }; +}; + +export default useNewResourceHighlight; From bd7e31f4bde3d1f39e19b9f897851be13301b13a Mon Sep 17 00:00:00 2001 From: Chuan-Heng Hsiao Date: Fri, 20 Sep 2024 16:16:32 -0400 Subject: [PATCH 215/337] staging with tag --- .github/workflows/build.yml | 21 ++++++++++++++++----- 1 file changed, 16 insertions(+), 5 deletions(-) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 7b48e9ad8..6fe274938 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -2,7 +2,7 @@ name: build on: push: - branches: [ master ] + branches: [ master, staging ] jobs: build: @@ -36,14 +36,25 @@ jobs: username: ${{ github.repository_owner }} password: ${{ secrets.GITHUB_TOKEN }} + - name: Get postfix of latest + id: postfix_of_latest + run: | + if [[ $GITHUB_REF_TYPE == tag || $GITHUB_REF_NAME == master ]]; then + echo "Postfix of latest: ''" + echo "postfix_of_latest=" >> $GITHUB_OUTPUT + else + echo "Postfix of latest: -$GITHUB_REF_NAME" + echo "postfix_of_latest=-$GITHUB_REF_NAME" >> $GITHUB_OUTPUT + fi + - name: Build and push uses: docker/build-push-action@v5 with: tags: | - docker.io/fnndsc/chris_ui:latest - docker.io/fnndsc/chris_ui:${{ steps.info.outputs.version_string }} - ghcr.io/fnndsc/chris_ui:latest - ghcr.io/fnndsc/chris_ui:${{ steps.info.outputs.version_string }} + docker.io/fnndsc/chris_ui:latest${{ steps.postfix_of_latest.outputs.postfix_of_latest}} + docker.io/fnndsc/chris_ui:${{ steps.info.outputs.version_string }}${{ steps.postfix_of_latest.outputs.postfix_of_latest}} + ghcr.io/fnndsc/chris_ui:latest${{ steps.postfix_of_latest.outputs.postfix_of_latest}} + ghcr.io/fnndsc/chris_ui:${{ steps.info.outputs.version_string }}${{ steps.postfix_of_latest.outputs.postfix_of_latest}} context: . file: ./Dockerfile platforms: linux/amd64 From 0419bb7a7d2a94439ab7c21dc41bfb3de32684a7 Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Fri, 20 Sep 2024 21:50:28 -0400 Subject: [PATCH 216/337] Change LonkClient to accept handlers via init --- src/api/fp/chrisapi.ts | 19 ++---- src/api/lonk/client.test.ts | 12 ++-- src/api/lonk/client.ts | 48 +++++++++----- src/components/Pacs/app.tsx | 66 +++++++------------ .../Pacs/components/PacsStudies.tsx | 13 ++++ src/components/Pacs/components/input.tsx | 3 +- src/components/Pacs/pacs.tsx | 45 ++++++++++--- 7 files changed, 116 insertions(+), 90 deletions(-) create mode 100644 src/components/Pacs/components/PacsStudies.tsx diff --git a/src/api/fp/chrisapi.ts b/src/api/fp/chrisapi.ts index b860d1651..93d6a1b7f 100644 --- a/src/api/fp/chrisapi.ts +++ b/src/api/fp/chrisapi.ts @@ -9,7 +9,7 @@ import Client, { import * as TE from "fp-ts/TaskEither"; import * as E from "fp-ts/Either"; import { pipe } from "fp-ts/function"; -import LonkClient, { LonkHandlers } from "../lonk"; +import LonkClient from "../lonk"; /** * fp-ts friendly wrapper for @fnndsc/chrisapi @@ -128,14 +128,11 @@ class FpClient { * * https://chrisproject.org/docs/oxidicom/lonk-ws */ - public connectPacsNotifications({ - onDone, - onProgress, - onError, - timeout, - }: LonkHandlers & { timeout?: number }): TE.TaskEither { + public connectPacsNotifications( + ...args: Parameters + ): TE.TaskEither { return pipe( - this.createDownloadToken(timeout), + this.createDownloadToken(...args), TE.flatMap((downloadToken) => { const url = getWebsocketUrl(downloadToken); let callback: ((c: E.Either) => void) | null = null; @@ -143,11 +140,7 @@ class FpClient { (resolve) => (callback = resolve), ); const ws = new WebSocket(url); - ws.onopen = () => - callback && - callback( - E.right(new LonkClient({ ws, onDone, onProgress, onError })), - ); + ws.onopen = () => callback && callback(E.right(new LonkClient(ws))); ws.onerror = (_ev) => callback && callback( diff --git a/src/api/lonk/client.test.ts b/src/api/lonk/client.test.ts index ec6d828b2..e6f746f35 100644 --- a/src/api/lonk/client.test.ts +++ b/src/api/lonk/client.test.ts @@ -8,7 +8,9 @@ test("LonkClient", async () => { onProgress: vi.fn(), onError: vi.fn(), }; - const [server, client] = await createMockubeWs(handlers); + const [server, client] = await createMockubeWs(32585); + client.init(handlers); + const SeriesInstanceUID = "1.234.56789"; const pacs_name = "MyPACS"; @@ -89,13 +91,11 @@ test("LonkClient", async () => { /** * Create a mock WebSockets server and client. */ -async function createMockubeWs( - handlers: LonkHandlers, -): Promise<[WS, LonkClient]> { - const url = "ws://localhost:32585"; +async function createMockubeWs(port: number): Promise<[WS, LonkClient]> { + const url = `ws://localhost:${port}`; const server = new WS(url, { jsonProtocol: true }); const ws = new WebSocket(url); - const client = new LonkClient({ ws, ...handlers }); + const client = new LonkClient(ws); let callback: null | (([server, client]: [WS, LonkClient]) => void) = null; const promise: Promise<[WS, LonkClient]> = new Promise((resolve) => { diff --git a/src/api/lonk/client.ts b/src/api/lonk/client.ts index 1c5a4f0ba..0784b36f0 100644 --- a/src/api/lonk/client.ts +++ b/src/api/lonk/client.ts @@ -10,7 +10,6 @@ import { import deserialize from "./de.ts"; import { pipe } from "fp-ts/function"; import * as E from "fp-ts/Either"; -import * as T from "fp-ts/Task"; import SeriesMap from "./seriesMap.ts"; /** @@ -20,26 +19,33 @@ import SeriesMap from "./seriesMap.ts"; class LonkClient { private readonly ws: WebSocket; private readonly pendingSubscriptions: SeriesMap SeriesKey)>; + private handlers: LonkHandlers | null; - public constructor({ - ws, - onDone, - onProgress, - onError, - }: LonkHandlers & { ws: WebSocket }) { + public constructor(ws: WebSocket) { + this.handlers = null; this.pendingSubscriptions = new SeriesMap(); this.ws = ws; this.ws.onmessage = (msg) => { pipe( msg.data, deserialize, - E.map((data) => - this.routeMessage({ data, onDone, onProgress, onError }), - ), + E.map((data) => this.routeMessage(data)), ); }; } + /** + * Configure this client with event handler functions. + * `init` must be called exactly once. + */ + public init(handlers: LonkHandlers): LonkClient { + if (this.handlers) { + throw new Error("LonkClient.init called more than once."); + } + this.handlers = handlers; + return this; + } + /** * Subscribe to notifications for a series. */ @@ -61,12 +67,11 @@ class LonkClient { return callbackTask; } - private routeMessage({ - data, - onDone, - onProgress, - onError, - }: LonkHandlers & { data: Lonk }) { + private routeMessage(data: Lonk) { + if (this.handlers === null) { + throw new Error("LonkClient.init has not been called yet."); + } + const { onProgress, onDone, onError } = this.handlers; const { SeriesInstanceUID, pacs_name, message } = data; // note: for performance reasons, this if-else chain is in // descending order of case frequency. @@ -102,11 +107,20 @@ class LonkClient { } /** - * Close the websocket. + * Close the WebSocket. */ public close() { this.ws.close(); } + + /** + * Set the WebSocket's `close` event listener. + * + * https://developer.mozilla.org/en-US/docs/Web/API/WebSocket/close_event + */ + public set onclose(onclose: WebSocket["onclose"]) { + this.ws.onclose = onclose; + } } function isSubscribed(msg: { [key: string]: any }): msg is LonkSubscription { diff --git a/src/components/Pacs/app.tsx b/src/components/Pacs/app.tsx index bb6fceeaa..472bcac9a 100644 --- a/src/components/Pacs/app.tsx +++ b/src/components/Pacs/app.tsx @@ -42,13 +42,18 @@ const PacsQRApp: React.FC<{ getPfdcmClient: () => PfdcmClient; getChrisClient: () => Client; }> = ({ getChrisClient, getPfdcmClient }) => { + /** + * List of PACS server names which can be queried. + */ const [services, setServices] = React.useState>([]); - const [service, setService] = React.useState(null); const [lonkClient, setLonkClient] = React.useState(null); const [error, setError] = React.useState(null); - const { message, notification, modal } = App.useApp(); + const { notification } = App.useApp(); + /** + * Show a notification for an error message. + */ const pushError = React.useMemo(() => { return (title: string) => { return (e: Error) => { @@ -63,13 +68,6 @@ const PacsQRApp: React.FC<{ }; }, [notification]); - const pfdcmClient = React.useMemo(getPfdcmClient, [getPfdcmClient]); - const chrisClient = React.useMemo(getChrisClient, [getChrisClient]); - - const fpClient = React.useMemo(() => { - return new FpClient(chrisClient); - }, [chrisClient]); - /** * Show an error screen with the error's message. * @@ -77,6 +75,13 @@ const PacsQRApp: React.FC<{ */ const failWithError = TE.mapLeft((e: Error) => setError(e.message)); + const pfdcmClient = React.useMemo(getPfdcmClient, [getPfdcmClient]); + const chrisClient = React.useMemo(getChrisClient, [getChrisClient]); + const fpClient = React.useMemo( + () => new FpClient(chrisClient), + [chrisClient], + ); + React.useEffect(() => { document.title = "ChRIS PACS"; }, []); @@ -85,25 +90,22 @@ const PacsQRApp: React.FC<{ const getServicesPipeline = pipe( pfdcmClient.getPacsServices(), failWithError, - TE.map((services) => { - setServices(services); - const defaultService = getDefaultPacsService(services); - defaultService && setService(defaultService); - }), + TE.map(setServices), ); getServicesPipeline(); }, [pfdcmClient, pushError]); React.useEffect(() => { let lonkClientRef: LonkClient | null = null; - - const onDone = () => {}; // TODO - const onProgress = () => {}; // TODO - const onError = () => {}; // TODO const connectWsPipeline = pipe( - fpClient.connectPacsNotifications({ onDone, onProgress, onError }), + fpClient.connectPacsNotifications(), failWithError, TE.map((client) => (lonkClientRef = client)), + TE.map((client) => { + client.onclose = () => + setError("WebSocket closed, please refresh the page."); + return client; + }), TE.map(setLonkClient), ); connectWsPipeline(); @@ -115,13 +117,11 @@ const PacsQRApp: React.FC<{ {error !== null ? ( {error} - ) : services && service && lonkClient ? ( + ) : services && lonkClient ? ( ) : ( @@ -131,26 +131,4 @@ const PacsQRApp: React.FC<{ ); }; -/** - * Selects the default PACS service (which is usually not the PACS service literally called "default"). - * - * 1. Selects the hard-coded "PACSDCM" - * 2. Attempts to select the first value which is not "default" (a useless, legacy pfdcm behavior) - * 3. Selects the first value - */ -function getDefaultPacsService(services: ReadonlyArray): string | null { - if (services.includes("PACSDCM")) { - return "PACSDCM"; - } - for (const service of services) { - if (service !== "default") { - return service; - } - } - if (services) { - return services[0]; - } - return null; -} - export default PacsQRApp; diff --git a/src/components/Pacs/components/PacsStudies.tsx b/src/components/Pacs/components/PacsStudies.tsx new file mode 100644 index 000000000..17cf41314 --- /dev/null +++ b/src/components/Pacs/components/PacsStudies.tsx @@ -0,0 +1,13 @@ +import { PacsStudy } from "../types.ts"; + +type PacsStudiesDisplayProps = { + studies: ReadonlyArray; + onSeriesPull: (pacs_name: string, SeriesInstanceUID: string) => void; + onStudyPull: (pacs_name: string, SeriesInstanceUID: string) => void; +}; + +const PacsStudiesDisplay: React.FC = ({}) => { + return <>hello, world; +}; + +export default PacsStudiesDisplay; diff --git a/src/components/Pacs/components/input.tsx b/src/components/Pacs/components/input.tsx index ba4906fc0..c0f8b0cd9 100644 --- a/src/components/Pacs/components/input.tsx +++ b/src/components/Pacs/components/input.tsx @@ -48,6 +48,7 @@ const MrnInput: React.FC = ({ query, setQuery, ...props }) => { } name="mrnSearchInput" placeholder="Search for DICOM studies by MRN" + {...props} /> {!isQueryEmpty(query) && ( - )} - + submitMrn(e.currentTarget.value)} + onSearch={submitMrn} + enterButton={true} + /> ); }; /** * An advanced search input field for searching in PACS by PatientID, AccessionNumber, ... */ -const AdvancedInput: React.FC = ({ - query, - setQuery, - ...props -}) => { +const AdvancedInput: React.FC = ({ onSubmit }) => { return ( <> -

Advanced search not implemented.

+

Advanced search not implemented.

); }; -type ServiceDropdownProps = { - service: string; - setService: (service: string) => void; - services: ReadonlyArray; -}; - -const ServiceDropdown: React.FC = ({ - service, - services, - setService, -}) => { - const [isOpen, setIsOpen] = React.useState(false); - return ( - { - typeof value === "string" && setService(value); - setIsOpen(false); - }} - onOpenChange={(isOpen: boolean) => setIsOpen(isOpen)} - toggle={(toggleRef: React.Ref) => ( - setIsOpen((open) => !open)} - isExpanded={isOpen} - isFullWidth - title="PACS service" - > - {service} - - )} - > - - {services.map((service) => ( - - {service} - - ))} - - - ); -}; - /** * A `` which shows different text on mobile vs desktop layouts. */ const ScreenSizeSpan: React.FC<{ mobile: React.ReactNode; desktop: React.ReactNode; -}> = ({ mobile, desktop }) => ( - <> - {mobile} - {desktop} - -); +}> = ({ mobile, desktop }) => { + const screens = Grid.useBreakpoint(); + return screens.md ? desktop : mobile; +}; + +const PacsInput: React.FC = ({ onSubmit, services }) => { + const searchParamHooks = useSearchParams(); + const [searchParams, setSearchParams] = searchParamHooks; + const [isAdvancedSearch, setIsAdvancedSearch] = useBooleanSearchParam( + searchParamHooks, + "advancedSearch", + ); -const PacsInput: React.FC = ({ - service, - services, - setService, - ...props -}) => { - const [advancedSearch, setAdvancedSearch] = React.useState(false); + const defaultService = React.useMemo( + () => getDefaultPacsService(services), + [services], + ); - const InputElement = advancedSearch ? AdvancedInput : MrnInput; + const service = searchParams.get("service") || defaultService; + const setService = (service: string) => + setSearchParams((searchParams) => { + searchParams.set("service", service); + return searchParams; + }); + const curriedOnSubmit = React.useMemo( + () => (query: PACSqueryCore) => onSubmit(service, query), + [service, onSubmit], + ); + const input = React.useMemo( + () => + isAdvancedSearch ? ( + + ) : ( + + ), + [isAdvancedSearch, curriedOnSubmit], + ); const advancedSearchToggle = ( - - } - isSelected={!advancedSearch} - onChange={() => setAdvancedSearch(false)} - /> - } - isSelected={advancedSearch} - onChange={() => setAdvancedSearch(true)} - /> - + , + value: false, + }, + { + label: , + value: true, + }, + ]} + value={isAdvancedSearch} + onChange={(e) => setIsAdvancedSearch(e.target.value)} + /> ); const serviceDropdown = ( - +
+ setPacsName(e.target.value)} + /> + setSeriesInstanceUID(e.target.value)} + /> + + +
{subscribedPacsName}
+
+ {subscribedSeriesUid} +
+ +
{unsubscribed}
+ + ); +}; + +test("LonkSubscriber", async () => { + const [client, server] = createMockCubePacsWs(32525); + const props = { + getClient: vi.fn(() => client), + onDone: vi.fn(), + onProgress: vi.fn(), + onError: vi.fn(), + onMessageError: vi.fn(), + }; + render(); + await server.connected; + expect(screen.getByTestId("readyState")).toHaveTextContent( + "" + ReadyState.OPEN, + ); + + const SeriesInstanceUID = "1.234.56789"; + const pacs_name = "MyPACS"; + + const subscriptionReceiveAndRespond = async () => { + await expect(server).toReceiveMessage({ + pacs_name, + SeriesInstanceUID, + action: "subscribe", + }); + server.send({ + pacs_name, + SeriesInstanceUID, + message: { subscribed: true }, + }); + }; + + const subscriptionPromise = subscriptionReceiveAndRespond(); + const pacsNameInput = screen.getByTestId("pacs_name"); + const seriesUidInput = screen.getByTestId("SeriesInstanceUID"); + const subscribeForm = screen.getByTestId("subscribe"); + fireEvent.change(pacsNameInput, { target: { value: pacs_name } }); + fireEvent.change(seriesUidInput, { target: { value: SeriesInstanceUID } }); + fireEvent.submit(subscribeForm); + await subscriptionPromise; + await expect + .poll(() => screen.getByTestId("subscribed-pacs_name")) + .toHaveTextContent(pacs_name); + await expect + .poll(() => screen.getByTestId("subscribed-SeriesInstanceUID")) + .toHaveTextContent(SeriesInstanceUID); + + server.send({ + pacs_name, + SeriesInstanceUID, + message: { + ndicom: 48, + }, + }); + expect(props.onProgress).toHaveBeenCalledOnce(); + expect(props.onProgress).toHaveBeenLastCalledWith( + pacs_name, + SeriesInstanceUID, + 48, + ); + + server.send({ + pacs_name, + SeriesInstanceUID, + message: { + ndicom: 88, + }, + }); + expect(props.onProgress).toHaveBeenCalledTimes(2); + expect(props.onProgress).toHaveBeenLastCalledWith( + pacs_name, + SeriesInstanceUID, + 88, + ); + + server.send({ + pacs_name, + SeriesInstanceUID, + message: { + error: "stuck in chimney", + }, + }); + expect(props.onError).toHaveBeenCalledOnce(); + expect(props.onError).toHaveBeenLastCalledWith( + pacs_name, + SeriesInstanceUID, + "stuck in chimney", + ); + + server.send({ + pacs_name, + SeriesInstanceUID, + message: { + done: true, + }, + }); + expect(props.onDone).toHaveBeenCalledOnce(); + expect(props.onDone).toHaveBeenLastCalledWith(pacs_name, SeriesInstanceUID); + + const bogusData = { bogus: "data" }; + server.send(bogusData); + expect(props.onMessageError).toHaveBeenCalledOnce(); + expect(props.onMessageError).toHaveBeenCalledWith( + JSON.stringify(bogusData), + `Missing or invalid 'message' in ${JSON.stringify(bogusData)}`, + ); + + fireEvent.click(screen.getByTestId("unsubscribe")); + await expect(server).toReceiveMessage({ + action: "unsubscribe", + }); + server.send({ message: { subscribed: false } }); + await expect + .poll(() => screen.getByTestId("unsubscribed")) + .toHaveTextContent("true"); + cleanup(); + await server.closed; +}); + +test.each([ + [ + { + url: "http://example.com/api/v1/downloadtokens/9/", + auth: { + token: "fakeauthtoken", + }, + contentType: "application/vnd.collection+json", + data: { + id: 9, + creation_date: "2024-08-27T17:17:28.580683-04:00", + token: "nota.real.jwttoken", + owner_username: "chris", + }, + }, + "ws://example.com/api/v1/pacs/ws/?token=nota.real.jwttoken", + ], + [ + { + url: "https://example.com/api/v1/downloadtokens/9/", + auth: { + token: "fakeauthtoken", + }, + contentType: "application/vnd.collection+json", + data: { + id: 9, + creation_date: "2024-08-27T17:17:28.580683-04:00", + token: "stillnota.real.jwttoken", + owner_username: "chris", + }, + }, + "wss://example.com/api/v1/pacs/ws/?token=stillnota.real.jwttoken", + ], +])("getWebsocketUrl(%o, %s) -> %s", (downloadTokenResponse, expected) => { + // @ts-ignore + let actual = getWebsocketUrl(downloadTokenResponse); + expect(actual).toBe(expected); +}); diff --git a/src/api/lonk/useLonk.ts b/src/api/lonk/useLonk.ts new file mode 100644 index 000000000..9d358c261 --- /dev/null +++ b/src/api/lonk/useLonk.ts @@ -0,0 +1,103 @@ +import Client, { DownloadToken } from "@fnndsc/chrisapi"; +import useWebSocket, { Options, ReadyState } from "react-use-websocket"; +import { LonkHandlers, SeriesKey } from "./types.ts"; +import React from "react"; +import LonkSubscriber from "./LonkSubscriber.ts"; + +/** + * A subset of the options which are passed through to {@link useWebSocket}. + */ +type AllowedOptions = Pick< + Options, + | "onOpen" + | "onClose" + | "onReconnectStop" + | "shouldReconnect" + | "reconnectInterval" + | "reconnectAttempts" + | "retryOnError" +>; + +type UseLonkParams = LonkHandlers & + AllowedOptions & { + client: Client; + onWebsocketError?: Options["onError"]; + }; + +type UseLonkHook = ReturnType & { + /** + * Subscribe to a DICOM series for receive progress notifications. + */ + subscribe: ( + pacs_name: string, + SeriesInstanceUID: string, + ) => Promise; + /** + * Unsubscribe from all notifications. + */ + unsubscribeAll: () => Promise; +}; + +/** + * Implementation of LONK-WS consumer as a React.js hook, based on + * {@link useWebSocket}. + * + * https://chrisproject.org/docs/oxidicom/lonk-ws + */ +function useLonk({ + client, + onDone, + onProgress, + onError, + onMessageError, + onWebsocketError, + ...options +}: UseLonkParams): UseLonkHook { + const getLonkUrl = React.useCallback(async () => { + const downloadToken = await client.createDownloadToken(); + return getWebsocketUrl(downloadToken); + }, [client, getWebsocketUrl]); + const handlers = { onDone, onProgress, onError, onMessageError }; + const [subscriber, _setSubscriber] = React.useState( + new LonkSubscriber(handlers), + ); + const onMessage = React.useCallback( + (event: MessageEvent) => { + subscriber.handle(event.data); + }, + [onProgress, onDone, onError], + ); + const hook = useWebSocket(getLonkUrl, { + ...options, + onError: onWebsocketError, + onMessage, + }); + + const subscribe = React.useCallback( + (pacs_name: string, SeriesInstanceUID: string) => + subscriber.subscribe(pacs_name, SeriesInstanceUID, hook), + [subscriber, hook], + ); + + const unsubscribeAll = React.useCallback( + () => subscriber.unsubscribeAll(hook), + [subscriber, hook], + ); + + return { + ...hook, + subscribe, + unsubscribeAll, + }; +} + +function getWebsocketUrl(downloadTokenResponse: DownloadToken): string { + const token = downloadTokenResponse.data.token; + return downloadTokenResponse.url + .replace(/^http(s?):\/\//, (_match, s) => `ws${s}://`) + .replace(/v1\/downloadtokens\/\d+\//, `v1/pacs/ws/?token=${token}`); +} + +export type { UseLonkParams }; +export { getWebsocketUrl }; +export default useLonk; diff --git a/src/api/testHelpers.ts b/src/api/testHelpers.ts new file mode 100644 index 000000000..cdc3c37e6 --- /dev/null +++ b/src/api/testHelpers.ts @@ -0,0 +1,34 @@ +import { vi } from "vitest"; +import ChrisClient, { DownloadToken } from "@fnndsc/chrisapi"; +import WS from "vitest-websocket-mock"; + +/** + * Helper function for mocking LONK-WS. + */ +function createMockCubePacsWs( + port: number, + id: number = 55, +): [ChrisClient, WS] { + const fakeChrisHost = `localhost:${port}`; + const fakeChrisUrl = `http://${fakeChrisHost}/api/v1/`; + const fakeChrisAuth = { token: "12345" }; + vi.spyOn(DownloadToken.prototype, "data", "get").mockReturnValue({ + token: "abcdefgnotarealjwt", + }); + const fakeDownloadToken = new DownloadToken( + `${fakeChrisUrl}downloadtokens/${id}/`, + fakeChrisAuth, + ); + + const client = new ChrisClient(fakeChrisUrl, fakeChrisAuth); + client.createDownloadToken = vi.fn(async () => fakeDownloadToken); + + const ws = new WS( + `ws://${fakeChrisHost}/api/v1/pacs/ws/?token=abcdefgnotarealjwt`, + { jsonProtocol: true }, + ); + + return [client, ws]; +} + +export { createMockCubePacsWs }; diff --git a/src/components/Pacs/PacsController.test.tsx b/src/components/Pacs/PacsController.test.tsx index a5d0ffaa8..86c0f5df4 100644 --- a/src/components/Pacs/PacsController.test.tsx +++ b/src/components/Pacs/PacsController.test.tsx @@ -1,15 +1,13 @@ import { cleanup, screen } from "@testing-library/react"; import { expect, test, vi } from "vitest"; import PacsQRApp from "./PacsController.tsx"; -import * as TE from "fp-ts/TaskEither"; import { Configuration as PfdcmConfig, PfdcmClient } from "../../api/pfdcm"; -import ChrisClient, { DownloadToken } from "@fnndsc/chrisapi"; -import WS from "vitest-websocket-mock"; import { renderWithProviders } from "../../store/testHelpers.tsx"; +import { createMockCubePacsWs } from "../../api/testHelpers.ts"; test("PACS Q/R page can bootstrap", async () => { - const pfdcmClient = createPfdcmMock(TE.right(["BCH", "MGH", "BWH"])); - const [chrisClient, ws] = createWorkingMockPacsWs(32584); + const pfdcmClient = createPfdcmMock(async () => ["BCH", "MGH", "BWH"]); + const [chrisClient, ws] = createMockCubePacsWs(32584); const getClientMocks = { getChrisClient: vi.fn(() => chrisClient), @@ -25,17 +23,13 @@ test("PACS Q/R page can bootstrap", async () => { // First PACS service (besides 'default') should be automatically selected. expect(screen.getByTitle("PACS service")).toHaveTextContent("BCH"); - - // component should close WebSocket connection when unmounted - cleanup(); - await ws.closed; }); test("Shows error screen if PFDCM is offline", async () => { - const pfdcmClient = createPfdcmMock( - TE.left(new Error("I am an expected error")), - ); - const [chrisClient, _ws] = createWorkingMockPacsWs(32583); + const pfdcmClient = createPfdcmMock(async () => { + throw new Error("I am an expected error"); + }); + const [chrisClient, _ws] = createMockCubePacsWs(32583); const getClientMocks = { getChrisClient: vi.fn(() => chrisClient), @@ -51,37 +45,9 @@ test("Shows error screen if PFDCM is offline", async () => { ).toBeInTheDocument(); }); -function createWorkingMockPacsWs( - port: number, - id: number = 55, -): [ChrisClient, WS] { - const fakeChrisHost = `localhost:${port}`; - const fakeChrisUrl = `http://${fakeChrisHost}/api/v1/`; - const fakeChrisAuth = { token: "12345" }; - vi.spyOn(DownloadToken.prototype, "data", "get").mockReturnValue({ - token: "abcdefgnotarealjwt", - }); - const fakeDownloadToken = new DownloadToken( - `${fakeChrisUrl}downloadtokens/${id}/`, - fakeChrisAuth, - ); - - const client = new ChrisClient(fakeChrisUrl, fakeChrisAuth); - client.createDownloadToken = vi.fn(async () => fakeDownloadToken); - - const ws = new WS( - `ws://${fakeChrisHost}/api/v1/pacs/ws/?token=abcdefgnotarealjwt`, - { jsonProtocol: true }, - ); - - return [client, ws]; -} - -function createPfdcmMock( - servicesReturn: ReturnType, -) { +function createPfdcmMock(getPacsServices: PfdcmClient["getPacsServices"]) { const pfdcmConfig = new PfdcmConfig({ basePath: "https://example.com" }); const pfdcmClient = new PfdcmClient(pfdcmConfig); - pfdcmClient.getPacsServices = vi.fn(() => servicesReturn); + pfdcmClient.getPacsServices = vi.fn(getPacsServices); return pfdcmClient; } diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index 7f2171831..f7d866c01 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -16,11 +16,7 @@ import React from "react"; import { PACSqueryCore, PfdcmClient } from "../../api/pfdcm"; import Client, { PACSSeries } from "@fnndsc/chrisapi"; -import LonkSubscriber from "../../api/lonk"; import { App } from "antd"; -import FpClient from "../../api/fp/chrisapi.ts"; -import * as TE from "fp-ts/TaskEither"; -import { pipe } from "fp-ts/function"; import { PageSection } from "@patternfly/react-core"; import PacsView from "./PacsView.tsx"; import PacsLoadingScreen from "./components/PacsLoadingScreen.tsx"; @@ -28,15 +24,18 @@ import ErrorScreen from "./components/ErrorScreen.tsx"; import { skipToken, useQueries, useQuery } from "@tanstack/react-query"; import joinStates, { SeriesQueryZip } from "./joinStates.ts"; import { + DEFAULT_RECEIVE_STATE, IPacsState, - SeriesReceiveState, ReceiveState, + SeriesReceiveState, StudyKey, } from "./types.ts"; import { DEFAULT_PREFERENCES } from "./defaultPreferences.ts"; import { zipPacsNameAndSeriesUids } from "./helpers.ts"; import { useImmer } from "use-immer"; import SeriesMap from "../../api/lonk/seriesMap.ts"; +import { useLonk } from "../../api/lonk"; +import { produce, WritableDraft } from "immer"; type PacsControllerProps = { getPfdcmClient: () => PfdcmClient; @@ -58,10 +57,6 @@ const PacsController: React.FC = ({ const pfdcmClient = React.useMemo(getPfdcmClient, [getPfdcmClient]); const chrisClient = React.useMemo(getChrisClient, [getChrisClient]); - const fpClient = React.useMemo( - () => new FpClient(chrisClient), - [chrisClient], - ); // ======================================== // STATE @@ -71,7 +66,11 @@ const PacsController: React.FC = ({ service?: string; query?: PACSqueryCore; }>({}); - const [wsError, setWsError] = React.useState(null); + + /** + * Indicates a fatal error with the WebSocket. + */ + const [wsError, setWsError] = React.useState(null); // TODO create a settings component for changing preferences const [preferences, setPreferences] = React.useState(DEFAULT_PREFERENCES); @@ -146,10 +145,100 @@ const PacsController: React.FC = ({ }, [preferences, studies]); const error = React.useMemo( - () => wsError || pfdcmServices.error, + () => wsError || pfdcmServices.error?.message, [wsError, pfdcmServices.error], ); + // ======================================== + // LONK WEBSOCKET + // ======================================== + + const getSeriesDescriptionOr = React.useCallback( + (pacs_name: string, SeriesInstanceUID: string) => { + if (!pfdcmStudies.data) { + return SeriesInstanceUID; + } + const series = pfdcmStudies.data + .flatMap((s) => s.series) + .find( + (s) => + s.SeriesInstanceUID === SeriesInstanceUID && + s.RetrieveAETitle === pacs_name, + ); + if (!series) { + return SeriesInstanceUID; + } + return series.SeriesDescription; + }, + [pfdcmStudies.data], + ); + + /** + * Update (or insert) the state of a series' reception. + */ + const updateReceiveState = React.useCallback( + ( + pacs_name: string, + SeriesInstanceUID: string, + recipe: (draft: WritableDraft) => void, + ) => + setReceiveState((draft) => { + const prevState = + draft.get(pacs_name, SeriesInstanceUID) || DEFAULT_RECEIVE_STATE; + const nextState = produce(prevState, recipe); + draft.set(pacs_name, SeriesInstanceUID, nextState); + }), + [setReceiveState], + ); + + const lonk = useLonk({ + client: chrisClient, + onDone(pacs_name: string, SeriesInstanceUID: string) { + updateReceiveState(pacs_name, SeriesInstanceUID, (draft) => { + draft.done = true; + }); + }, + onProgress(pacs_name: string, SeriesInstanceUID: string, ndicom: number) { + updateReceiveState(pacs_name, SeriesInstanceUID, (draft) => { + draft.receivedCount = ndicom; + }); + }, + onError(pacs_name: string, SeriesInstanceUID: string, error: string) { + updateReceiveState(pacs_name, SeriesInstanceUID, (draft) => { + draft.errors.push(error); + }); + const desc = getSeriesDescriptionOr(pacs_name, SeriesInstanceUID); + message.error( + <>There was an error while receiving the series "{desc}", + ); + }, + onMessageError(data: any, error: string) { + console.error("LONK message error", error, data); + message.error( + <> + A LONK error occurred, please check the console. + , + ); + }, + retryOnError: true, + reconnectAttempts: 3, + reconnectInterval: 3000, + shouldReconnect(e) { + return e.code < 400 || e.code > 499; + }, + onReconnectStop() { + setWsError(<>The WebSocket is disconnected.); + }, + onWebsocketError() { + message.error( + <>There was an error with the WebSocket. Reconnecting…, + ); + }, + onClose() { + message.error(<>The WebSocket was closed. Reconnecting…); + }, + }); + // ======================================== // CALLBACKS // ======================================== @@ -198,27 +287,20 @@ const PacsController: React.FC = ({ }; }, []); - // Connect to PACS progress websocket and respond to updates. + // Subscribe to all expanded series React.useEffect(() => { - let subscriber: LonkSubscriber | null = null; - const connectWsPipeline = pipe( - fpClient.connectPacsNotifications(), - TE.mapLeft(setWsError), - TE.map((s) => (subscriber = s)), - TE.map((s) => { - s.onclose = () => - message.error(<>WebSocket closed, please refresh the page.); - s.init({ - // TODO - onError: () => {}, - onDone: () => {}, - onProgress: () => {}, + for (const { pacs_name, SeriesInstanceUID } of expandedSeries) { + lonk + .subscribe(pacs_name, SeriesInstanceUID) + .then(({ pacs_name, SeriesInstanceUID }) => { + updateReceiveState(pacs_name, SeriesInstanceUID, (draft) => { + draft.subscribed = true; + }); }); - }), - ); - connectWsPipeline(); - return () => subscriber?.close(); - }, [fpClient, setWsError, message]); + } + // Note: we are subscribing to series, but never unsubscribing. + // This is mostly harmless. + }, [expandedSeries]); // ======================================== // RENDER @@ -227,7 +309,7 @@ const PacsController: React.FC = ({ return ( {error ? ( - {error.message} + {error} ) : pfdcmServices.data ? ( >>, -// ) { -// state.studies = pipe( -// action.payload, -// E.map((studies) => studies.map(newStudyState)), -// ); -// }, -// }, -// }); -// -// function newStudyState({ study, series }: StudyAndSeries): PacsStudyState { -// return { -// info: study, -// series: series.map((info) => { -// return { -// info, -// receivedCount: 0, -// error: [], -// pullState: SeriesPullState.READY, -// inCube: null, -// }; -// }), -// }; -// } -// -// export { context }; -// export default context.reducer; diff --git a/src/components/Pacs/joinStates.test.ts b/src/components/Pacs/joinStates.test.ts new file mode 100644 index 000000000..d6e283618 --- /dev/null +++ b/src/components/Pacs/joinStates.test.ts @@ -0,0 +1,104 @@ +import { expect, test } from "vitest"; +import { pullStateOf } from "./joinStates.ts"; +import { + DEFAULT_RECEIVE_STATE, + SeriesPullState, + SeriesReceiveState, +} from "./types.ts"; + +test.each(< + [ + SeriesReceiveState, + { isLoading: boolean; data: any } | undefined, + SeriesPullState, + ][] +>[ + [DEFAULT_RECEIVE_STATE, undefined, SeriesPullState.NOT_CHECKED], + [ + { + subscribed: true, + requested: false, + done: false, + receivedCount: 0, + errors: [], + }, + { + isLoading: true, + data: undefined, + }, + SeriesPullState.CHECKING, + ], + [ + { + subscribed: false, + requested: false, + done: false, + receivedCount: 0, + errors: [], + }, + { + isLoading: false, + data: null, + }, + SeriesPullState.CHECKING, + ], + [ + { + subscribed: true, + requested: false, + done: false, + receivedCount: 0, + errors: [], + }, + { + isLoading: false, + data: null, + }, + SeriesPullState.READY, + ], + [ + { + subscribed: true, + requested: true, + done: false, + receivedCount: 0, + errors: [], + }, + { + isLoading: false, + data: null, + }, + SeriesPullState.PULLING, + ], + [ + { + subscribed: true, + requested: true, + done: true, + receivedCount: 10, + errors: [], + }, + { + isLoading: false, + data: null, + }, + SeriesPullState.WAITING_OR_COMPLETE, + ], + [ + { + subscribed: true, + requested: true, + done: true, + receivedCount: 10, + errors: [], + }, + { + isLoading: false, + data: "some", + }, + SeriesPullState.WAITING_OR_COMPLETE, + ], +])("pullStateOf(%o, %o) -> %o", (state, result, expected) => { + const actual = pullStateOf(state, result); + expect(actual).toStrictEqual(expected); +}); diff --git a/src/components/Pacs/joinStates.ts b/src/components/Pacs/joinStates.ts index 15d991191..9fe48f198 100644 --- a/src/components/Pacs/joinStates.ts +++ b/src/components/Pacs/joinStates.ts @@ -58,21 +58,48 @@ function joinStates( }); } +/** + * State coalescence. + * + * It is assumed that ChRIS has the following behavior for each DICOM series: + * + * 1. ChRIS_ui subscribes to a series' notifications via LONK + * 2. ChRIS_ui checks CUBE whether a series exists in CUBE + * 3. When both subscription and existence check is complete, + * and the series does not exist in CUBE, ChRIS_ui is ready + * to pull the DICOM series. + * 4. During the reception of a DICOM series, `status.done === false` + * 5. After the reception of a DICOM series, ChRIS enters a "waiting" + * state while the task to register the DICOM series is enqueued + * or running. + * 6. The DICOM series will appear in CUBE after being registered. + */ function pullStateOf( state: SeriesReceiveState, - result?: PACSSeriesQueryResult, + result?: { isLoading: boolean; data: any }, ): SeriesPullState { if (!result) { + // request to check CUBE whether series exists has not been initiated return SeriesPullState.NOT_CHECKED; } - if (result.isLoading) { + if (!state.subscribed || result.isLoading) { + // either not subscribed yet, or request to check CUBE whether series + // exists is pending return SeriesPullState.CHECKING; } if (result.data === null) { + // checked, series DOES NOT exist in CUBE + if (state.done) { + // finished receiving by oxidicom, waiting for CUBE to register + return SeriesPullState.WAITING_OR_COMPLETE; + } + // either pulling or ready to pull return state.requested ? SeriesPullState.PULLING : SeriesPullState.READY; } + // checked, series DOES exist in CUBE. It is complete. return SeriesPullState.WAITING_OR_COMPLETE; } export type { SeriesQueryZip }; +export { pullStateOf }; export default joinStates; diff --git a/src/components/Pacs/types.ts b/src/components/Pacs/types.ts index 0fd163455..e3b7f5289 100644 --- a/src/components/Pacs/types.ts +++ b/src/components/Pacs/types.ts @@ -42,6 +42,10 @@ enum SeriesPullState { * The state of a DICOM series retrieval. */ type SeriesReceiveState = { + /** + * Whether this series has been subscribed to via LONK. + */ + subscribed: boolean; /** * Whether this series has been requested by PFDCM. */ @@ -61,6 +65,7 @@ type SeriesReceiveState = { }; const DEFAULT_RECEIVE_STATE: SeriesReceiveState = { + subscribed: false, requested: false, done: false, receivedCount: 0, diff --git a/src/store/testHelpers.tsx b/src/store/testHelpers.tsx index 2e392756b..0881e3a6e 100644 --- a/src/store/testHelpers.tsx +++ b/src/store/testHelpers.tsx @@ -7,6 +7,8 @@ import { ApplicationState } from "./root/applicationState.ts"; import { Provider } from "react-redux"; import { MemoryRouter } from "react-router"; import React from "react"; +import { QueryClient, QueryClientProvider } from "@tanstack/react-query"; +import { App } from "antd"; // This type interface extends the default options for render from RTL, as well // as allows the user to specify other things such as initialState, store. @@ -29,9 +31,24 @@ export function renderWithProviders( ...renderOptions } = extendedRenderOptions; + const queryClient = new QueryClient({ + defaultOptions: { + queries: { + refetchOnWindowFocus: false, // default: true + refetchOnMount: false, + retry: false, + staleTime: 0, + }, + }, + }); + const Wrapper = ({ children }: React.PropsWithChildren) => ( - {children} + + + {children} + + ); From 1a66b2aaa890c0a9ef1705faa3020c215b4b8670 Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Tue, 24 Sep 2024 11:51:29 -0400 Subject: [PATCH 245/337] Rename things + more documentation --- biome.json | 1 + src/components/Pacs/PacsController.test.tsx | 2 +- src/components/Pacs/PacsController.tsx | 61 +++++++++++++------ src/components/Pacs/joinStates.test.ts | 2 +- .../Pacs/{joinStates.ts => mergeStates.ts} | 30 +++------ vitest.setup.ts | 16 +++-- 6 files changed, 66 insertions(+), 46 deletions(-) rename src/components/Pacs/{joinStates.ts => mergeStates.ts} (72%) diff --git a/biome.json b/biome.json index ac80de028..4e93c86e1 100644 --- a/biome.json +++ b/biome.json @@ -7,6 +7,7 @@ "package.json", "biome.json", "*.config.ts", + "vitest.*.ts", "tsconfig*.json", "testing/*.mjs" ], diff --git a/src/components/Pacs/PacsController.test.tsx b/src/components/Pacs/PacsController.test.tsx index 86c0f5df4..5b9cc465e 100644 --- a/src/components/Pacs/PacsController.test.tsx +++ b/src/components/Pacs/PacsController.test.tsx @@ -1,4 +1,4 @@ -import { cleanup, screen } from "@testing-library/react"; +import { screen } from "@testing-library/react"; import { expect, test, vi } from "vitest"; import PacsQRApp from "./PacsController.tsx"; import { Configuration as PfdcmConfig, PfdcmClient } from "../../api/pfdcm"; diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index f7d866c01..5dc574baa 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -1,16 +1,7 @@ /** * The primary PACS Q/R UI code is found in ./PacsView.tsx. This file defines - * a component which wraps the default export from ./PacsView.tsx, which: - * - * 1. "bootstraps" the client objects it needs (see below) - * - * The PACS Q/R application needs to be "bootstrapped" which means: - * - * 1. Making an initial connection to PFDCM - * 2. Connecting to the PACS receive progress WebSocket, `api/v1/pacs/ws/` - * - * During bootstrapping, a loading screen is shown. - * If bootstrapping fails, an error screen is shown. + * a component which wraps the default export from ./PacsView.tsx, which + * manages effects and state. */ import React from "react"; @@ -22,7 +13,7 @@ import PacsView from "./PacsView.tsx"; import PacsLoadingScreen from "./components/PacsLoadingScreen.tsx"; import ErrorScreen from "./components/ErrorScreen.tsx"; import { skipToken, useQueries, useQuery } from "@tanstack/react-query"; -import joinStates, { SeriesQueryZip } from "./joinStates.ts"; +import mergeStates, { SeriesQueryZip } from "./mergeStates.ts"; import { DEFAULT_RECEIVE_STATE, IPacsState, @@ -43,7 +34,44 @@ type PacsControllerProps = { }; /** - * ChRIS_ui PACS Query and Retrieve controller + view. + * ChRIS_ui "PACS Query and Retrieve" controller + view. + * + * ## Purpose + * + * This component handles all the state and effects for {@link PacsView}, + * which includes: + * + * - Managing the CUBE and PFDCM client objects and making requests with them + * - Connecting to the progress notifications WebSocket at `api/v1/pacs/ws/` + * - Knowing the state of which DICOM series are received, receiving, or + * ready to receive. + * - Dispatching requests for querying and retrieving DICOM from PACS via PFDCM. + * + * ## Bootstrapping + * + * The PACS Q/R application needs to be "bootstrapped" which means: + * + * 1. Making an initial connection to PFDCM + * 2. Connecting to the PACS receive progress WebSocket, `api/v1/pacs/ws/` + * + * During bootstrapping, a loading screen is shown. If bootstrapping fails, + * an error screen is shown. + * + * ## PACS Retrieve Workflow + * + * ChRIS_ui and the rest of CUBE work together to implement the following + * behavior for each DICOM series: + * + * 1. ChRIS_ui subscribes to a series' notifications via LONK + * 2. ChRIS_ui checks CUBE whether a series exists in CUBE + * 3. When both subscription and existence check is complete, + * and the series does not exist in CUBE, ChRIS_ui is ready + * to pull the DICOM series. + * 4. During the reception of a DICOM series, `status.done === false` + * 5. After the reception of a DICOM series, ChRIS enters a "waiting" + * state while the task to register the DICOM series is enqueued + * or running. + * 6. The DICOM series will appear in CUBE after being registered. */ const PacsController: React.FC = ({ getChrisClient, @@ -137,8 +165,8 @@ const PacsController: React.FC = ({ if (!pfdcmStudies.data) { return null; } - return joinStates(pfdcmStudies.data, cubeSeriesQueryZip, receiveState); - }, [joinStates, pfdcmStudies, cubeSeriesQueryZip, receiveState]); + return mergeStates(pfdcmStudies.data, cubeSeriesQueryZip, receiveState); + }, [mergeStates, pfdcmStudies, cubeSeriesQueryZip, receiveState]); const state: IPacsState = React.useMemo(() => { return { preferences, studies }; @@ -234,9 +262,6 @@ const PacsController: React.FC = ({ <>There was an error with the WebSocket. Reconnecting…, ); }, - onClose() { - message.error(<>The WebSocket was closed. Reconnecting…); - }, }); // ======================================== diff --git a/src/components/Pacs/joinStates.test.ts b/src/components/Pacs/joinStates.test.ts index d6e283618..d81e160b6 100644 --- a/src/components/Pacs/joinStates.test.ts +++ b/src/components/Pacs/joinStates.test.ts @@ -1,5 +1,5 @@ import { expect, test } from "vitest"; -import { pullStateOf } from "./joinStates.ts"; +import { pullStateOf } from "./mergeStates.ts"; import { DEFAULT_RECEIVE_STATE, SeriesPullState, diff --git a/src/components/Pacs/joinStates.ts b/src/components/Pacs/mergeStates.ts similarity index 72% rename from src/components/Pacs/joinStates.ts rename to src/components/Pacs/mergeStates.ts index 9fe48f198..de63edd2c 100644 --- a/src/components/Pacs/joinStates.ts +++ b/src/components/Pacs/mergeStates.ts @@ -21,9 +21,9 @@ type SeriesQueryZip = { * Fragments of the state of a DICOM series exists remotely in three places: * PFDCM, CUBE, and LONK. * - * Join the states from those places into one mega-object. + * Merge the states from those places into one mega-object. */ -function joinStates( +function mergeStates( pfdcm: ReadonlyArray, cubeSeriesQuery: ReadonlyArray, receiveState: ReceiveState, @@ -59,35 +59,23 @@ function joinStates( } /** - * State coalescence. - * - * It is assumed that ChRIS has the following behavior for each DICOM series: - * - * 1. ChRIS_ui subscribes to a series' notifications via LONK - * 2. ChRIS_ui checks CUBE whether a series exists in CUBE - * 3. When both subscription and existence check is complete, - * and the series does not exist in CUBE, ChRIS_ui is ready - * to pull the DICOM series. - * 4. During the reception of a DICOM series, `status.done === false` - * 5. After the reception of a DICOM series, ChRIS enters a "waiting" - * state while the task to register the DICOM series is enqueued - * or running. - * 6. The DICOM series will appear in CUBE after being registered. + * State coalescence for the "PACS Retrieve Workflow" described in the + * tsdoc for {@link PacsController}. */ function pullStateOf( state: SeriesReceiveState, - result?: { isLoading: boolean; data: any }, + cubeQueryResult?: { isLoading: boolean; data: any }, ): SeriesPullState { - if (!result) { + if (!cubeQueryResult) { // request to check CUBE whether series exists has not been initiated return SeriesPullState.NOT_CHECKED; } - if (!state.subscribed || result.isLoading) { + if (!state.subscribed || cubeQueryResult.isLoading) { // either not subscribed yet, or request to check CUBE whether series // exists is pending return SeriesPullState.CHECKING; } - if (result.data === null) { + if (cubeQueryResult.data === null) { // checked, series DOES NOT exist in CUBE if (state.done) { // finished receiving by oxidicom, waiting for CUBE to register @@ -102,4 +90,4 @@ function pullStateOf( export type { SeriesQueryZip }; export { pullStateOf }; -export default joinStates; +export default mergeStates; diff --git a/vitest.setup.ts b/vitest.setup.ts index 7c342c0ee..9582bad03 100644 --- a/vitest.setup.ts +++ b/vitest.setup.ts @@ -1,10 +1,16 @@ // Copied from // https://github.com/vitest-dev/vitest/blob/7d028cb37d3e964a37899559b640bcb3a13acda7/examples/react/vitest.setup.ts -import '@testing-library/jest-dom/vitest' -import { cleanup } from '@testing-library/react' -import { afterEach } from 'vitest' +import "@testing-library/jest-dom/vitest"; +import { cleanup } from "@testing-library/react"; +import { afterEach } from "vitest"; afterEach(() => { - cleanup() -}) + /* + * Note: when `cleanup` is called, antd might throw false positive warnings: + * + * > Warning: [antd: Message] You are calling notice in render which will + * > break in React 18 concurrent mode. Please trigger in effect instead. + */ + cleanup(); +}); From 6d390592714897958afa39e38e15a8890290fe6f Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Tue, 24 Sep 2024 13:46:22 -0400 Subject: [PATCH 246/337] feat: update upload saga --- package.json | 44 +- pnpm-lock.yaml | 966 +++++++++++++++++++++++++++++++++-- src/store/cart/uploadSaga.ts | 25 +- vite.config.ts | 5 + 4 files changed, 961 insertions(+), 79 deletions(-) diff --git a/package.json b/package.json index 12dd0708c..640a34055 100644 --- a/package.json +++ b/package.json @@ -45,17 +45,17 @@ "@fontsource/inter": "^5.0.20", "@niivue/niivue": "0.44.2", "@patternfly/react-catalog-view-extension": "^5.0.0", - "@patternfly/react-charts": "^7.3.0", + "@patternfly/react-charts": "^7.4.0", "@patternfly/react-core": "^5.4.0", "@patternfly/react-icons": "^5.4.0", "@patternfly/react-log-viewer": "^5.3.0", "@patternfly/react-styles": "^5.4.0", - "@patternfly/react-table": "^5.3.4", - "@react-hook/resize-observer": "^2.0.1", + "@patternfly/react-table": "^5.4.0", + "@react-hook/resize-observer": "^2.0.2", "@reduxjs/toolkit": "^2.2.7", "@tanstack/react-query": "^5.56.2", "antd": "^5.20.6", - "axios": "^1.7.2", + "axios": "^1.7.5", "d3-hierarchy": "^3.1.2", "d3-selection": "^3.0.0", "d3-shape": "^3.2.0", @@ -63,7 +63,7 @@ "date-fns": "^4.1.0", "dicom-parser": "^1.8.21", "email-validator": "^2.0.4", - "fp-ts": "^2.16.8", + "fp-ts": "^2.16.9", "hammerjs": "^2.0.8", "immer": "^10.1.1", "lodash": "^4.17.21", @@ -74,27 +74,27 @@ "p-queue": "^8.0.1", "pako": "^1.0.11", "preval.macro": "^5.0.0", - "query-string": "^9.0.0", - "rc-tree": "^5.8.0", + "query-string": "^9.1.0", + "rc-tree": "^5.8.8", "react": "^18.3.1", "react-activity": "^2.1.3", - "react-bootstrap-typeahead": "^6.2.3", - "react-cookie": "^7.1.4", + "react-bootstrap-typeahead": "^6.3.2", + "react-cookie": "^7.2.0", "react-dom": "^18.3.1", "react-dropzone": "^14.2.3", "react-error-boundary": "^4.0.13", - "react-force-graph-2d": "^1.25.3", + "react-force-graph-2d": "^1.25.5", "react-json-view": "^1.21.3", "react-lazylog": "^4.5.3", - "react-redux": "^9.1.0", + "react-redux": "^9.1.2", "react-router": "^6.26.2", "react-router-dom": "^6.26.2", "redux-saga": "^1.3.0", "rusha": "^0.8.14", - "sanitize-html": "^2.11.0", + "sanitize-html": "^2.13.0", "shlex": "^2.1.2", "typescript": "^5.6.2", - "use-ackee": "^3.0.1", + "use-ackee": "^3.1.0", "use-immer": "^0.10.0", "uuid": "^10.0.0", "vite-plugin-babel-macros": "^1.0.6" @@ -102,28 +102,30 @@ "devDependencies": { "@biomejs/biome": "1.9.1", "@faker-js/faker": "^9.0.1", - "@playwright/test": "^1.41.2", + "@playwright/test": "^1.46.1", "@redux-devtools/extension": "^3.3.0", "@types/d3-hierarchy": "3.1.7", "@types/d3-selection": "3.0.10", "@types/d3-shape": "^3.1.6", "@types/d3-zoom": "^3.0.8", - "@types/lodash": "^4.14.202", + "@types/lodash": "^4.17.7", "@types/node": "^22.5.5", - "@types/react": "^18.3.1", + "@types/react": "^18.3.4", "@types/react-dom": "^18.3.0", - "@types/redux-logger": "^3.0.11", + "@types/redux-logger": "^3.0.13", "@types/uuid": "10.0.0", - "@vitejs/plugin-react-swc": "^3.5.0", + "@vitejs/plugin-react-swc": "^3.7.0", "@vitest/coverage-v8": "2.1.1", "happy-dom": "^15.0.0", - "lefthook": "^1.6.1", + "lefthook": "^1.7.14", "nyc": "^17.0.0", - "playwright": "^1.41.2", + "playwright": "^1.46.1", "redux-logger": "4.0.0", "vite": "5.4.6", "vite-plugin-istanbul": "^6.0.2", + "vite-plugin-node-polyfills": "^0.22.0", "vitest": "2.1.1" }, - "type": "module" + "type": "module", + "packageManager": "pnpm@9.11.0+sha512.0a203ffaed5a3f63242cd064c8fb5892366c103e328079318f78062f24ea8c9d50bc6a47aa3567cabefd824d170e78fa2745ed1f16b132e16436146b7688f19b" } diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index 6c3f371d9..db6cd26d5 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -33,7 +33,7 @@ importers: specifier: ^5.0.0 version: 5.0.0(react-dom@18.3.1(react@18.3.1))(react@18.3.1) '@patternfly/react-charts': - specifier: ^7.3.0 + specifier: ^7.4.0 version: 7.4.0(react-dom@18.3.1(react@18.3.1))(react@18.3.1) '@patternfly/react-core': specifier: ^5.4.0 @@ -48,10 +48,10 @@ importers: specifier: ^5.4.0 version: 5.4.0 '@patternfly/react-table': - specifier: ^5.3.4 + specifier: ^5.4.0 version: 5.4.0(react-dom@18.3.1(react@18.3.1))(react@18.3.1) '@react-hook/resize-observer': - specifier: ^2.0.1 + specifier: ^2.0.2 version: 2.0.2(react@18.3.1) '@reduxjs/toolkit': specifier: ^2.2.7 @@ -63,7 +63,7 @@ importers: specifier: ^5.20.6 version: 5.20.6(date-fns@4.1.0)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) axios: - specifier: ^1.7.2 + specifier: ^1.7.5 version: 1.7.5 d3-hierarchy: specifier: ^3.1.2 @@ -87,7 +87,7 @@ importers: specifier: ^2.0.4 version: 2.0.4 fp-ts: - specifier: ^2.16.8 + specifier: ^2.16.9 version: 2.16.9 hammerjs: specifier: ^2.0.8 @@ -120,10 +120,10 @@ importers: specifier: ^5.0.0 version: 5.0.0 query-string: - specifier: ^9.0.0 + specifier: ^9.1.0 version: 9.1.0 rc-tree: - specifier: ^5.8.0 + specifier: ^5.8.8 version: 5.8.8(react-dom@18.3.1(react@18.3.1))(react@18.3.1) react: specifier: ^18.3.1 @@ -132,10 +132,10 @@ importers: specifier: ^2.1.3 version: 2.1.3(react-dom@18.3.1(react@18.3.1))(react@18.3.1) react-bootstrap-typeahead: - specifier: ^6.2.3 + specifier: ^6.3.2 version: 6.3.2(react-dom@18.3.1(react@18.3.1))(react@18.3.1) react-cookie: - specifier: ^7.1.4 + specifier: ^7.2.0 version: 7.2.0(react@18.3.1) react-dom: specifier: ^18.3.1 @@ -147,7 +147,7 @@ importers: specifier: ^4.0.13 version: 4.0.13(react@18.3.1) react-force-graph-2d: - specifier: ^1.25.3 + specifier: ^1.25.5 version: 1.25.5(react@18.3.1) react-json-view: specifier: ^1.21.3 @@ -156,7 +156,7 @@ importers: specifier: ^4.5.3 version: 4.5.3(react-dom@18.3.1(react@18.3.1))(react@18.3.1) react-redux: - specifier: ^9.1.0 + specifier: ^9.1.2 version: 9.1.2(@types/react@18.3.4)(react@18.3.1)(redux@5.0.1) react-router: specifier: ^6.26.2 @@ -171,7 +171,7 @@ importers: specifier: ^0.8.14 version: 0.8.14 sanitize-html: - specifier: ^2.11.0 + specifier: ^2.13.0 version: 2.13.0 shlex: specifier: ^2.1.2 @@ -180,7 +180,7 @@ importers: specifier: ^5.6.2 version: 5.6.2 use-ackee: - specifier: ^3.0.1 + specifier: ^3.1.0 version: 3.1.0(react@18.3.1) use-immer: specifier: ^0.10.0 @@ -199,7 +199,7 @@ importers: specifier: ^9.0.1 version: 9.0.1 '@playwright/test': - specifier: ^1.41.2 + specifier: ^1.46.1 version: 1.46.1 '@redux-devtools/extension': specifier: ^3.3.0 @@ -217,25 +217,25 @@ importers: specifier: ^3.0.8 version: 3.0.8 '@types/lodash': - specifier: ^4.14.202 + specifier: ^4.17.7 version: 4.17.7 '@types/node': specifier: ^22.5.5 version: 22.5.5 '@types/react': - specifier: ^18.3.1 + specifier: ^18.3.4 version: 18.3.4 '@types/react-dom': specifier: ^18.3.0 version: 18.3.0 '@types/redux-logger': - specifier: ^3.0.11 + specifier: ^3.0.13 version: 3.0.13 '@types/uuid': specifier: 10.0.0 version: 10.0.0 '@vitejs/plugin-react-swc': - specifier: ^3.5.0 + specifier: ^3.7.0 version: 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dependencies: node-fetch: 2.7.0 @@ -6246,6 +6799,20 @@ snapshots: shebang-command: 2.0.0 which: 2.0.2 + crypto-browserify@3.12.0: + dependencies: + browserify-cipher: 1.0.1 + browserify-sign: 4.2.3 + create-ecdh: 4.0.4 + create-hash: 1.2.0 + create-hmac: 1.1.7 + diffie-hellman: 5.0.3 + inherits: 2.0.4 + pbkdf2: 3.1.2 + public-encrypt: 4.0.3 + randombytes: 2.1.0 + randomfill: 1.0.4 + cssfilter@0.0.10: {} csstype@3.1.3: {} @@ -6351,6 +6918,10 @@ snapshots: dependencies: ms: 2.1.2 + debug@4.3.7: + dependencies: + ms: 2.1.3 + decamelize@1.2.0: {} decode-named-character-reference@1.0.2: @@ -6391,6 +6962,11 @@ snapshots: dequal@2.0.3: {} + des.js@1.1.0: + dependencies: + inherits: 2.0.4 + minimalistic-assert: 1.0.1 + detect-gpu@5.0.45: dependencies: webgl-constants: 1.1.1 @@ -6401,6 +6977,12 @@ snapshots: dicom-parser@1.8.21: {} + diffie-hellman@5.0.3: + dependencies: + bn.js: 4.12.0 + miller-rabin: 4.0.1 + randombytes: 2.1.0 + dom-helpers@5.2.1: dependencies: '@babel/runtime': 7.25.4 @@ -6412,6 +6994,8 @@ snapshots: domhandler: 5.0.3 entities: 4.5.0 + domain-browser@4.23.0: {} + domelementtype@2.3.0: {} domhandler@5.0.3: @@ -6428,6 +7012,16 @@ snapshots: electron-to-chromium@1.5.13: {} + elliptic@6.5.7: + dependencies: + bn.js: 4.12.0 + brorand: 1.1.0 + hash.js: 1.1.7 + hmac-drbg: 1.0.1 + inherits: 2.0.4 + minimalistic-assert: 1.0.1 + minimalistic-crypto-utils: 1.0.1 + email-validator@2.0.4: {} emoji-regex@8.0.0: {} @@ -6512,6 +7106,8 @@ snapshots: estraverse@5.3.0: {} + estree-walker@2.0.2: {} + estree-walker@3.0.3: dependencies: '@types/estree': 1.0.5 @@ -6522,6 +7118,11 @@ snapshots: events@3.3.0: {} + evp_bytestokey@1.0.3: + dependencies: + md5.js: 1.3.5 + safe-buffer: 5.2.1 + fast-deep-equal@3.1.3: {} fast-json-stable-stringify@2.1.0: {} @@ -6569,6 +7170,11 @@ snapshots: locate-path: 5.0.0 path-exists: 4.0.0 + find-up@5.0.0: + dependencies: + locate-path: 6.0.0 + path-exists: 4.0.0 + flux@4.0.4(react@18.3.1): dependencies: fbemitter: 3.0.0 @@ -6583,6 +7189,10 @@ snapshots: follow-redirects@1.15.6: {} + for-each@0.3.3: + dependencies: + is-callable: 1.2.7 + force-graph@1.43.5: dependencies: '@tweenjs/tween.js': 23.1.3 @@ -6702,6 +7312,26 @@ snapshots: has-symbols@1.0.3: {} + has-tostringtag@1.0.2: + dependencies: + has-symbols: 1.0.3 + + hash-base@3.0.4: + dependencies: + inherits: 2.0.4 + safe-buffer: 5.2.1 + + hash-base@3.1.0: + dependencies: + inherits: 2.0.4 + readable-stream: 3.6.2 + safe-buffer: 5.2.1 + + hash.js@1.1.7: + dependencies: + inherits: 2.0.4 + minimalistic-assert: 1.0.1 + hasha@5.2.2: dependencies: is-stream: 2.0.1 @@ -6711,6 +7341,12 @@ snapshots: dependencies: function-bind: 1.1.2 + hmac-drbg@1.0.1: + dependencies: + hash.js: 1.1.7 + minimalistic-assert: 1.0.1 + minimalistic-crypto-utils: 1.0.1 + hoist-non-react-statics@3.3.2: dependencies: react-is: 16.13.1 @@ -6724,6 +7360,10 @@ snapshots: domutils: 3.1.0 entities: 4.5.0 + https-browserify@1.0.0: {} + + ieee754@1.2.1: {} + immer@10.1.1: {} immutable@3.8.2: {} @@ -6756,24 +7396,48 @@ snapshots: dependencies: loose-envify: 1.4.0 + is-arguments@1.1.1: + dependencies: + call-bind: 1.0.7 + has-tostringtag: 1.0.2 + is-arrayish@0.2.1: {} + is-callable@1.2.7: {} + is-core-module@2.15.1: dependencies: hasown: 2.0.2 is-fullwidth-code-point@3.0.0: {} + is-generator-function@1.0.10: + dependencies: + has-tostringtag: 1.0.2 + + is-nan@1.3.2: + dependencies: + call-bind: 1.0.7 + define-properties: 1.2.1 + is-plain-object@5.0.0: {} is-stream@2.0.1: {} + is-typed-array@1.1.13: + dependencies: + which-typed-array: 1.1.15 + is-typedarray@1.0.0: {} is-windows@1.0.2: {} + isarray@1.0.0: {} + isexe@2.0.0: {} + isomorphic-timers-promises@1.0.1: {} + istanbul-lib-coverage@3.2.2: {} istanbul-lib-hook@3.0.0: @@ -6836,7 +7500,7 @@ snapshots: jest-worker@27.5.1: dependencies: - '@types/node': 22.5.5 + '@types/node': 22.6.1 merge-stream: 2.0.0 supports-color: 8.1.1 @@ -6941,6 +7605,10 @@ snapshots: dependencies: p-locate: 4.1.0 + locate-path@6.0.0: + dependencies: + p-locate: 5.0.0 + lodash-es@4.17.21: {} lodash.clonedeep@4.5.0: {} @@ -6991,6 +7659,12 @@ snapshots: marked@14.1.2: {} + md5.js@1.3.5: + dependencies: + hash-base: 3.1.0 + inherits: 2.0.4 + safe-buffer: 5.2.1 + memoize-one@5.2.1: {} merge-stream@2.0.0: {} @@ -7179,12 +7853,21 @@ snapshots: transitivePeerDependencies: - supports-color + miller-rabin@4.0.1: + dependencies: + bn.js: 4.12.0 + brorand: 1.1.0 + mime-db@1.52.0: {} mime-types@2.1.35: dependencies: mime-db: 1.52.0 + minimalistic-assert@1.0.1: {} + + minimalistic-crypto-utils@1.0.1: {} + minimatch@3.1.2: dependencies: brace-expansion: 1.1.11 @@ -7201,6 +7884,8 @@ snapshots: ms@2.1.2: {} + ms@2.1.3: {} + nanoid@3.3.7: {} neo-async@2.6.2: {} @@ -7226,6 +7911,36 @@ snapshots: node-releases@2.0.18: {} + node-stdlib-browser@1.2.1: + dependencies: + assert: 2.1.0 + browser-resolve: 2.0.0 + browserify-zlib: 0.2.0 + buffer: 5.7.1 + console-browserify: 1.2.0 + constants-browserify: 1.0.0 + create-require: 1.1.1 + crypto-browserify: 3.12.0 + domain-browser: 4.23.0 + events: 3.3.0 + https-browserify: 1.0.0 + isomorphic-timers-promises: 1.0.1 + os-browserify: 0.3.0 + path-browserify: 1.0.1 + pkg-dir: 5.0.0 + process: 0.11.10 + punycode: 1.4.1 + querystring-es3: 0.2.1 + readable-stream: 3.6.2 + stream-browserify: 3.0.0 + stream-http: 3.2.0 + string_decoder: 1.1.1 + timers-browserify: 2.0.12 + tty-browserify: 0.0.1 + url: 0.11.4 + util: 0.12.5 + vm-browserify: 1.1.2 + normalize-range@0.1.2: {} nyc@17.0.0: @@ -7262,20 +7977,44 @@ snapshots: object-assign@4.1.1: {} + object-inspect@1.13.2: {} + + object-is@1.1.6: + dependencies: + call-bind: 1.0.7 + define-properties: 1.2.1 + object-keys@1.1.1: {} + object.assign@4.1.5: + dependencies: + call-bind: 1.0.7 + define-properties: 1.2.1 + has-symbols: 1.0.3 + object-keys: 1.1.1 + once@1.4.0: dependencies: wrappy: 1.0.2 + os-browserify@0.3.0: {} + p-limit@2.3.0: dependencies: p-try: 2.2.0 + p-limit@3.1.0: + dependencies: + yocto-queue: 0.1.0 + p-locate@4.1.0: dependencies: p-limit: 2.3.0 + p-locate@5.0.0: + dependencies: + p-limit: 3.1.0 + p-map@3.0.0: dependencies: aggregate-error: 3.1.0 @@ -7306,6 +8045,15 @@ snapshots: dependencies: callsites: 3.1.0 + parse-asn1@5.1.7: + dependencies: + asn1.js: 4.10.1 + browserify-aes: 1.2.0 + evp_bytestokey: 1.0.3 + hash-base: 3.0.4 + pbkdf2: 3.1.2 + safe-buffer: 5.2.1 + parse-json@5.2.0: dependencies: '@babel/code-frame': 7.24.7 @@ -7315,6 +8063,8 @@ snapshots: parse-srcset@1.0.2: {} + path-browserify@1.0.1: {} + path-exists@4.0.0: {} path-is-absolute@1.0.1: {} @@ -7334,14 +8084,28 @@ snapshots: pathval@2.0.0: {} + pbkdf2@3.1.2: + dependencies: + create-hash: 1.2.0 + create-hmac: 1.1.7 + ripemd160: 2.0.2 + safe-buffer: 5.2.1 + sha.js: 2.4.11 + picocolors@1.0.1: {} picocolors@1.1.0: {} + picomatch@2.3.1: {} + pkg-dir@4.2.0: dependencies: find-up: 4.1.0 + pkg-dir@5.0.0: + dependencies: + find-up: 5.0.0 + platform@1.3.6: {} playwright-core@1.46.1: {} @@ -7352,6 +8116,8 @@ snapshots: optionalDependencies: fsevents: 2.3.2 + possible-typed-array-names@1.0.0: {} + postcss-value-parser@4.2.0: {} postcss@8.4.41: @@ -7370,10 +8136,14 @@ snapshots: dependencies: babel-plugin-preval: 5.1.0 + process-nextick-args@2.0.1: {} + process-on-spawn@1.0.0: dependencies: fromentries: 1.3.2 + process@0.11.10: {} + promise@7.3.1: dependencies: asap: 2.0.6 @@ -7386,20 +8156,42 @@ snapshots: proxy-from-env@1.1.0: {} + public-encrypt@4.0.3: + dependencies: + bn.js: 4.12.0 + browserify-rsa: 4.1.0 + create-hash: 1.2.0 + parse-asn1: 5.1.7 + randombytes: 2.1.0 + safe-buffer: 5.2.1 + + punycode@1.4.1: {} + punycode@2.3.1: {} pure-color@1.3.0: {} + qs@6.13.0: + dependencies: + side-channel: 1.0.6 + query-string@9.1.0: dependencies: decode-uri-component: 0.4.1 filter-obj: 5.1.0 split-on-first: 3.0.0 + querystring-es3@0.2.1: {} + randombytes@2.1.0: dependencies: safe-buffer: 5.2.1 + randomfill@1.0.4: + dependencies: + randombytes: 2.1.0 + safe-buffer: 5.2.1 + rc-cascader@3.28.1(react-dom@18.3.1(react@18.3.1))(react@18.3.1): dependencies: '@babel/runtime': 7.25.4 @@ -7902,6 +8694,16 @@ snapshots: dependencies: loose-envify: 1.4.0 + readable-stream@2.3.8: + dependencies: + core-util-is: 1.0.3 + inherits: 2.0.4 + isarray: 1.0.0 + process-nextick-args: 2.0.1 + safe-buffer: 5.1.2 + string_decoder: 1.1.1 + util-deprecate: 1.0.2 + readable-stream@3.6.2: dependencies: inherits: 2.0.4 @@ -7936,7 +8738,7 @@ snapshots: regenerator-transform@0.15.2: dependencies: - '@babel/runtime': 7.25.4 + '@babel/runtime': 7.25.6 regexpu-core@5.3.2: dependencies: @@ -7979,6 +8781,11 @@ snapshots: dependencies: glob: 7.2.3 + ripemd160@2.0.2: + dependencies: + hash-base: 3.1.0 + inherits: 2.0.4 + rollup@4.21.1: dependencies: '@types/estree': 1.0.5 @@ -8046,8 +8853,22 @@ snapshots: set-blocking@2.0.0: {} + set-function-length@1.2.2: + dependencies: + define-data-property: 1.1.4 + es-errors: 1.3.0 + function-bind: 1.1.2 + get-intrinsic: 1.2.4 + gopd: 1.0.1 + has-property-descriptors: 1.0.2 + setimmediate@1.0.5: {} + sha.js@2.4.11: + dependencies: + inherits: 2.0.4 + safe-buffer: 5.2.1 + shader-loader@1.3.1: dependencies: loader-utils: 1.4.2 @@ -8066,6 +8887,13 @@ snapshots: shlex@2.1.2: {} + side-channel@1.0.6: + dependencies: + call-bind: 1.0.7 + es-errors: 1.3.0 + get-intrinsic: 1.2.4 + object-inspect: 1.13.2 + siginfo@2.0.0: {} signal-exit@3.0.7: {} @@ -8109,6 +8937,13 @@ snapshots: inherits: 2.0.4 readable-stream: 3.6.2 + stream-http@3.2.0: + dependencies: + builtin-status-codes: 3.0.0 + inherits: 2.0.4 + readable-stream: 3.6.2 + xtend: 4.0.2 + string-convert@0.2.1: {} string-width@4.2.3: @@ -8189,6 +9024,10 @@ snapshots: throttle-debounce@5.0.2: {} + timers-browserify@2.0.12: + dependencies: + setimmediate: 1.0.5 + tinybench@2.9.0: {} tinycolor2@1.6.0: {} @@ -8209,6 +9048,8 @@ snapshots: tslib@2.7.0: {} + tty-browserify@0.0.1: {} + type-fest@0.8.1: {} typedarray-to-buffer@3.1.5: @@ -8265,6 +9106,11 @@ snapshots: dependencies: punycode: 2.3.1 + url@0.11.4: + dependencies: + punycode: 1.4.1 + qs: 6.13.0 + use-ackee@3.1.0(react@18.3.1): dependencies: ackee-tracker: 5.1.0 @@ -8298,6 +9144,14 @@ snapshots: util-deprecate@1.0.2: {} + util@0.12.5: + dependencies: + inherits: 2.0.4 + is-arguments: 1.1.1 + is-generator-function: 1.0.10 + is-typed-array: 1.1.13 + which-typed-array: 1.1.15 + uuid@10.0.0: {} uuid@8.3.2: {} @@ -8512,6 +9366,14 @@ snapshots: transitivePeerDependencies: - supports-color + vite-plugin-node-polyfills@0.22.0(rollup@4.21.1)(vite@5.4.6(@types/node@22.5.5)(terser@5.33.0)): + dependencies: + '@rollup/plugin-inject': 5.0.5(rollup@4.21.1) + node-stdlib-browser: 1.2.1 + vite: 5.4.6(@types/node@22.5.5)(terser@5.33.0) + transitivePeerDependencies: + - rollup + vite@5.4.6(@types/node@22.5.5)(terser@5.33.0): dependencies: esbuild: 0.21.5 @@ -8557,6 +9419,8 @@ snapshots: - supports-color - terser + vm-browserify@1.1.2: {} + warning@4.0.3: dependencies: loose-envify: 1.4.0 @@ -8576,7 +9440,7 @@ snapshots: webpack@5.94.0: dependencies: - '@types/estree': 1.0.5 + '@types/estree': 1.0.6 '@webassemblyjs/ast': 1.12.1 '@webassemblyjs/wasm-edit': 1.12.1 '@webassemblyjs/wasm-parser': 1.12.1 @@ -8617,6 +9481,14 @@ snapshots: which-module@2.0.1: {} + which-typed-array@1.1.15: + dependencies: + available-typed-arrays: 1.0.7 + call-bind: 1.0.7 + for-each: 0.3.3 + gopd: 1.0.1 + has-tostringtag: 1.0.2 + which@2.0.2: dependencies: isexe: 2.0.0 @@ -8676,6 +9548,8 @@ snapshots: commander: 2.20.3 cssfilter: 0.0.10 + xtend@4.0.2: {} + y18n@4.0.3: {} yallist@3.1.1: {} @@ -8700,3 +9574,5 @@ snapshots: which-module: 2.0.1 y18n: 4.0.3 yargs-parser: 18.1.3 + + yocto-queue@0.1.0: {} diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index 5aa096b64..a61be9a60 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -50,7 +50,6 @@ function createUploadChannel(config: any) { }) .catch((error) => { let message = "Unexpected Error while uploading the file"; - if (axios.isCancel(error)) { emitter({ cancelled: true }); } else if (axios.isAxiosError(error)) { @@ -139,19 +138,19 @@ function* uploadFileBatch( // We need to cancel the folder upload manually since it will upload other files in the list and they will all error out due to the path being an invalid path isFolder && folderController.abort(); - if (!isFolder) { - // No need to manually cancel the upload for a single file as the request will fail. - yield call( - handleUploadError, - isFolder, - name, - currentPath, - false, - lastError, - ); - } - break; } + if (!isFolder) { + // No need to manually cancel the upload for a single file as the request will fail. + yield call( + handleUploadError, + isFolder, + name, + currentPath, + true, + error, + ); + } + break; } if (progress !== undefined && !isFolder && !cancelled && !error) { diff --git a/vite.config.ts b/vite.config.ts index 3dc74396d..06556a08f 100644 --- a/vite.config.ts +++ b/vite.config.ts @@ -2,11 +2,16 @@ import { defineConfig } from "vite"; import react from "@vitejs/plugin-react-swc"; import macrosPlugin from "vite-plugin-babel-macros"; import IstanbulPlugin from "vite-plugin-istanbul"; +import { nodePolyfills } from "vite-plugin-node-polyfills"; // https://vitejs.dev/config/ export default defineConfig({ plugins: [ react(), + // Workaround for the ✘ [ERROR] Failed to resolve entry for package "fs". The package may have incorrect main/module/exports specified in its package.json. [plugin vite:dep-pre-bundle] + nodePolyfills({ + include: ["fs"], + }), macrosPlugin(), // used for getting version string ...(process.env.USE_BABEL_PLUGIN_ISTANBUL ? [ From 23c0a4a592fd1aad68068f21eb5303c8ed305248 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Tue, 24 Sep 2024 14:33:39 -0400 Subject: [PATCH 247/337] fix: Fix the pagination bug in the dicom scroll --- src/components/FeedOutputBrowser/useFeedBrowser.tsx | 6 +++--- src/components/NewLibrary/components/LibraryTable.tsx | 1 - src/components/NewLibrary/index.tsx | 2 ++ src/components/Preview/FileDetailView.tsx | 11 ++--------- src/components/Preview/displays/DcmDisplay.tsx | 4 +--- 5 files changed, 8 insertions(+), 16 deletions(-) diff --git a/src/components/FeedOutputBrowser/useFeedBrowser.tsx b/src/components/FeedOutputBrowser/useFeedBrowser.tsx index 261c65531..7270d5c47 100644 --- a/src/components/FeedOutputBrowser/useFeedBrowser.tsx +++ b/src/components/FeedOutputBrowser/useFeedBrowser.tsx @@ -63,9 +63,9 @@ export const useFeedBrowser = () => { const observerTarget = useRef(null); const fetchMore = - pluginFilesPayload?.foldersPagination.hasNextPage || - pluginFilesPayload?.filesPagination.hasNextPage || - pluginFilesPayload?.linksPagination.hasNextPage; + pluginFilesPayload?.foldersPagination?.hasNextPage || + pluginFilesPayload?.filesPagination?.hasNextPage || + pluginFilesPayload?.linksPagination?.hasNextPage; // Set up an intersection observer to load more data when the user scrolls to the bottom of the page useEffect(() => { diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 2f2677d85..74ce97516 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -300,7 +300,6 @@ const LibraryTable: React.FC = ({ fetchMore={fetchMore} handlePagination={handlePagination} filesLoading={filesLoading} - isDrawer={true} /> )} diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index 90eda3f1b..74d27ab4c 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -26,6 +26,7 @@ import { notification } from "../Antd"; export async function fetchFolders(computedPath: string, pageNumber?: number) { const client = ChrisAPIClient.getClient(); await client.setUrls(); + const pagination = { limit: pageNumber ? pageNumber * 50 : 100, offset: 0, @@ -224,6 +225,7 @@ const NewLibrary = () => { computedPath={computedPath} fetchMore={fetchMore} handlePagination={handlePagination} + filesLoading={isFetching} /> {fetchMore && !isFetching && (
@@ -117,10 +120,12 @@ const SeriesRow: React.FC = ({ disabled={pullState !== SeriesPullState.READY} color={buttonColor} > - {isLoading || errors.length === 0 ? ( - - ) : ( + {errors.length > 1 ? ( + ) : isLoading ? ( + <> + ) : ( + )} diff --git a/src/components/Pacs/components/StudyButtons.tsx b/src/components/Pacs/components/StudyButtons.tsx index 3f00e0a72..75089573e 100644 --- a/src/components/Pacs/components/StudyButtons.tsx +++ b/src/components/Pacs/components/StudyButtons.tsx @@ -41,6 +41,7 @@ const StudyButtons: React.FC = ({ disabled={isPulled} onClick={onRetrieve} > + {/* FIXME CLICKING THIS BUTTON SHOULD SET EXPANDED STATE TO TRUE, INSTEAD OF TOGGLING EXPANDED STATE. */} {isLoading || } diff --git a/src/components/Pacs/joinStates.test.ts b/src/components/Pacs/joinStates.test.ts index d81e160b6..e57d0bab2 100644 --- a/src/components/Pacs/joinStates.test.ts +++ b/src/components/Pacs/joinStates.test.ts @@ -2,6 +2,7 @@ import { expect, test } from "vitest"; import { pullStateOf } from "./mergeStates.ts"; import { DEFAULT_RECEIVE_STATE, + RequestState, SeriesPullState, SeriesReceiveState, } from "./types.ts"; @@ -9,96 +10,140 @@ import { test.each(< [ SeriesReceiveState, + RequestState | undefined, { isLoading: boolean; data: any } | undefined, SeriesPullState, + string, ][] >[ - [DEFAULT_RECEIVE_STATE, undefined, SeriesPullState.NOT_CHECKED], + [ + DEFAULT_RECEIVE_STATE, + undefined, + undefined, + SeriesPullState.NOT_CHECKED, + "base case", + ], [ { subscribed: true, - requested: false, done: false, receivedCount: 0, errors: [], }, + undefined, + undefined, + SeriesPullState.NOT_CHECKED, + "subscribed, but have not checked whether series exists in CUBE", + ], + [ + { + subscribed: true, + done: false, + receivedCount: 0, + errors: [], + }, + undefined, { isLoading: true, data: undefined, }, SeriesPullState.CHECKING, + "pending check on series' existence in CUBE", ], [ { subscribed: false, - requested: false, done: false, receivedCount: 0, errors: [], }, + undefined, { isLoading: false, data: null, }, SeriesPullState.CHECKING, + "checked and does not exist in CUBE, but not yet subscribed", ], [ { subscribed: true, - requested: false, done: false, receivedCount: 0, errors: [], }, + undefined, { isLoading: false, data: null, }, SeriesPullState.READY, + "subscribed and ready to pull", ], [ { subscribed: true, - requested: true, done: false, receivedCount: 0, errors: [], }, + RequestState.NOT_REQUESTED, + { + isLoading: false, + data: null, + }, + SeriesPullState.PULLING, + "user clicked a button to retrieve", + ], + [ + { + subscribed: true, + done: false, + receivedCount: 20, + errors: [], + }, + RequestState.REQUESTED, { isLoading: false, data: null, }, SeriesPullState.PULLING, + "pulling, some files received", ], [ { subscribed: true, - requested: true, done: true, receivedCount: 10, errors: [], }, + RequestState.REQUESTED, { isLoading: false, data: null, }, SeriesPullState.WAITING_OR_COMPLETE, + "pulled, not yet registered by CUBE", ], [ { subscribed: true, - requested: true, done: true, receivedCount: 10, errors: [], }, + RequestState.REQUESTED, { isLoading: false, data: "some", }, SeriesPullState.WAITING_OR_COMPLETE, + "pulled and in CUBE", ], -])("pullStateOf(%o, %o) -> %o", (state, result, expected) => { - const actual = pullStateOf(state, result); - expect(actual).toStrictEqual(expected); -}); +])( + "pullStateOf(%o, %o, %o) -> %o // %s", + (state, pacsRequest, result, expected) => { + const actual = pullStateOf(state, pacsRequest, result); + expect(actual).toStrictEqual(expected); + }, +); diff --git a/src/components/Pacs/mergeStates.ts b/src/components/Pacs/mergeStates.ts index de63edd2c..1f1eace37 100644 --- a/src/components/Pacs/mergeStates.ts +++ b/src/components/Pacs/mergeStates.ts @@ -1,12 +1,14 @@ import { DEFAULT_RECEIVE_STATE, + PacsPullRequestState, PacsStudyState, ReceiveState, + RequestState, SeriesKey, SeriesPullState, SeriesReceiveState, } from "./types.ts"; -import { StudyAndSeries } from "../../api/pfdcm/models.ts"; +import { Series, StudyAndSeries } from "../../api/pfdcm/models.ts"; import { UseQueryResult } from "@tanstack/react-query"; import { PACSSeries } from "@fnndsc/chrisapi"; @@ -25,6 +27,7 @@ type SeriesQueryZip = { */ function mergeStates( pfdcm: ReadonlyArray, + pullRequests: ReadonlyArray, cubeSeriesQuery: ReadonlyArray, receiveState: ReceiveState, ): PacsStudyState[] { @@ -46,11 +49,18 @@ function mergeStates( const state = receiveState.get(info.RetrieveAETitle, info.SeriesInstanceUID) || DEFAULT_RECEIVE_STATE; + const pullRequestsForSeries = pullRequests.findLast((pr) => + isRequestFor(pr, info), + ); return { info, receivedCount: state.receivedCount, errors: state.errors.concat(cubeErrors), - pullState: pullStateOf(state, cubeQueryResult), + pullState: pullStateOf( + state, + pullRequestsForSeries?.state, + cubeQueryResult, + ), inCube: cubeQueryResult?.data || null, }; }), @@ -58,12 +68,35 @@ function mergeStates( }); } +/** + * @returns `true` if the query matches the series. + */ +function isRequestFor( + { query, service }: PacsPullRequestState, + series: Series, +): boolean { + if (service !== series.RetrieveAETitle) { + return false; + } + if (query.seriesInstanceUID) { + return query.seriesInstanceUID === series.SeriesInstanceUID; + } + if (query.studyInstanceUID) { + return query.studyInstanceUID === series.StudyInstanceUID; + } + if (query.accessionNumber) { + return query.accessionNumber === series.AccessionNumber; + } + return false; +} + /** * State coalescence for the "PACS Retrieve Workflow" described in the * tsdoc for {@link PacsController}. */ function pullStateOf( state: SeriesReceiveState, + pacsRequest?: RequestState, cubeQueryResult?: { isLoading: boolean; data: any }, ): SeriesPullState { if (!cubeQueryResult) { @@ -81,8 +114,18 @@ function pullStateOf( // finished receiving by oxidicom, waiting for CUBE to register return SeriesPullState.WAITING_OR_COMPLETE; } - // either pulling or ready to pull - return state.requested ? SeriesPullState.PULLING : SeriesPullState.READY; + if (state.receivedCount > 0) { + // DICOM series is being received, even though it wasn't requested. + // It was probably requested in another window, or by another user, + // or pushed to us without a MOVE-SCU request. + return SeriesPullState.PULLING; + } + if (pacsRequest === undefined) { + // Series is not requested nor pulled and ready to be pulled. + return SeriesPullState.READY; + } + // Request to retrieve was sent to PFDCM, but no files received yet. + return SeriesPullState.PULLING; } // checked, series DOES exist in CUBE. It is complete. return SeriesPullState.WAITING_OR_COMPLETE; diff --git a/src/components/Pacs/types.ts b/src/components/Pacs/types.ts index e3b7f5289..79dadafe4 100644 --- a/src/components/Pacs/types.ts +++ b/src/components/Pacs/types.ts @@ -1,6 +1,7 @@ import { Series, Study } from "../../api/pfdcm/models.ts"; import { PACSSeries } from "@fnndsc/chrisapi"; import SeriesMap from "../../api/lonk/seriesMap.ts"; +import { PACSqueryCore } from "../../api/pfdcm"; type StudyKey = { pacs_name: string; @@ -38,6 +39,25 @@ enum SeriesPullState { WAITING_OR_COMPLETE, } +/** + * The states a request can be in. + */ +enum RequestState { + NOT_REQUESTED, + REQUESTING, + REQUESTED, +} + +/** + * The state of a PACS pull request. + */ +type PacsPullRequestState = { + state: RequestState; + error?: Error; + query: PACSqueryCore; + service: string; +}; + /** * The state of a DICOM series retrieval. */ @@ -46,10 +66,6 @@ type SeriesReceiveState = { * Whether this series has been subscribed to via LONK. */ subscribed: boolean; - /** - * Whether this series has been requested by PFDCM. - */ - requested: boolean; /** * Whether this series was reported as "done" by LONK. */ @@ -66,7 +82,6 @@ type SeriesReceiveState = { const DEFAULT_RECEIVE_STATE: SeriesReceiveState = { subscribed: false, - requested: false, done: false, receivedCount: 0, errors: [], @@ -82,9 +97,11 @@ type ReceiveState = SeriesMap; /** * The combined state of a DICOM series in PFDCM, CUBE, and LONK. */ -type PacsSeriesState = Pick & { +type PacsSeriesState = Pick & { + errors: ReadonlyArray; info: Series; inCube: PACSSeries | null; + pullState: SeriesPullState; }; /** @@ -118,7 +135,7 @@ interface IPacsState { studies: PacsStudyState[] | null; } -export { SeriesPullState, DEFAULT_RECEIVE_STATE }; +export { SeriesPullState, RequestState, DEFAULT_RECEIVE_STATE }; export type { StudyKey, SeriesKey, @@ -128,4 +145,5 @@ export type { PacsSeriesState, PacsStudyState, PacsPreferences, + PacsPullRequestState, }; diff --git a/src/main.tsx b/src/main.tsx index 124f67825..c9cbca60a 100644 --- a/src/main.tsx +++ b/src/main.tsx @@ -4,7 +4,9 @@ import App from "./App.tsx"; import { setupStore } from "./store/configureStore.ts"; import { ThemeContextProvider } from "./components/DarkTheme/useTheme.tsx"; import "@fontsource/inter/400.css"; // Defaults to weight 400. +import { enableMapSet } from "immer"; +enableMapSet(); const store = setupStore(); ReactDOM.createRoot(document.getElementById("root")!).render( diff --git a/tsconfig.app.json b/tsconfig.app.json index 1540cf3c9..c518cdc04 100644 --- a/tsconfig.app.json +++ b/tsconfig.app.json @@ -1,8 +1,8 @@ { "compilerOptions": { - "target": "ES2020", + "target": "ES2023", "useDefineForClassFields": true, - "lib": ["ES2020", "DOM", "DOM.Iterable"], + "lib": ["ES2023", "DOM", "DOM.Iterable"], "module": "ESNext", "skipLibCheck": true, diff --git a/tsconfig.json b/tsconfig.json index ef4a75c57..be2f44a7b 100644 --- a/tsconfig.json +++ b/tsconfig.json @@ -1,8 +1,8 @@ { "compilerOptions": { - "target": "ES2021", + "target": "ES2023", "useDefineForClassFields": true, - "lib": ["ES2021", "DOM", "DOM.Iterable"], + "lib": ["ES2023", "DOM", "DOM.Iterable"], "module": "ESNext", "skipLibCheck": true, From 76c5a750350ae2f425347104c71a85c5a4ab6a6d Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Wed, 25 Sep 2024 15:48:56 -0400 Subject: [PATCH 251/337] Pull study works, except for the last part. --- src/api/lonk/seriesMap.ts | 11 ++ src/components/Pacs/PacsController.tsx | 169 ++++++++++++++---- src/components/Pacs/PacsView.tsx | 25 +-- .../Pacs/components/PacsStudiesView.tsx | 6 + src/components/Pacs/components/SeriesList.tsx | 21 ++- .../Pacs/components/StudyButtons.tsx | 16 +- src/components/Pacs/curry.ts | 26 +++ src/components/Pacs/helpers.ts | 13 +- testing/miniChRIS | 2 +- 9 files changed, 232 insertions(+), 57 deletions(-) create mode 100644 src/components/Pacs/curry.ts diff --git a/src/api/lonk/seriesMap.ts b/src/api/lonk/seriesMap.ts index 7aa559003..55a2b0e79 100644 --- a/src/api/lonk/seriesMap.ts +++ b/src/api/lonk/seriesMap.ts @@ -41,6 +41,17 @@ class SeriesMap { private keyOf(pacs_name: string, SeriesInstanceUID: string): string { return JSON.stringify({ SeriesInstanceUID, pacs_name }); } + + /** + * Get the entries `[pacs_name, SeriesInstanceUID, value]` + */ + public entries(): [string, string, T][] { + // when we upgrade to TS 5.9, use Iterator.map instead of Array.map + return Array.from(this.map.entries()).map(([key, value]) => { + const { pacs_name, SeriesInstanceUID } = JSON.parse(key); + return [pacs_name, SeriesInstanceUID, value]; + }); + } } export default SeriesMap; diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index e9ff6110b..f408eb4a9 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -30,11 +30,17 @@ import { StudyKey, } from "./types.ts"; import { DEFAULT_PREFERENCES } from "./defaultPreferences.ts"; -import { zipPacsNameAndSeriesUids } from "./helpers.ts"; +import { toStudyKey, zipPacsNameAndSeriesUids } from "./helpers.ts"; import { useImmer } from "use-immer"; import SeriesMap from "../../api/lonk/seriesMap.ts"; import { useLonk } from "../../api/lonk"; import { produce, WritableDraft } from "immer"; +import { + isFromPacs, + sameSeriesInstanceUidAs, + sameStudyInstanceUidAs, +} from "./curry.ts"; +import { Study } from "../../api/pfdcm/models.ts"; type PacsControllerProps = { getPfdcmClient: () => PfdcmClient; @@ -101,29 +107,19 @@ const PacsController: React.FC = ({ // STATE // ======================================== - const [{ service, query }, setPacsQuery] = React.useState<{ - service?: string; - query?: PACSqueryCore; - }>({}); - /** * Indicates a fatal error with the WebSocket. */ const [wsError, setWsError] = React.useState(null); // TODO create a settings component for changing preferences const [preferences, setPreferences] = React.useState(DEFAULT_PREFERENCES); + /** * The state of DICOM series, according to LONK. */ const [receiveState, setReceiveState] = useImmer( new SeriesMap(), ); - /** - * Studies which have their series visible on-screen. - */ - const [expandedStudies, setExpandedStudies] = React.useState< - ReadonlyArray - >([]); /** * List of PACS queries which the user wants to pull. @@ -164,9 +160,14 @@ const PacsController: React.FC = ({ ); // ======================================== - // QUERIES AND DATA + // PFDCM QUERIES AND DATA // ======================================== + const [{ service, query }, setPacsQuery] = React.useState<{ + service?: string; + query?: PACSqueryCore; + }>({}); + /** * List of PACS servers which PFDCM can talk to. */ @@ -186,6 +187,26 @@ const PacsController: React.FC = ({ queryFn: service && query ? () => pfdcmClient.query(service, query) : skipToken, }); + + // ======================================== + // EXPANDED STUDIES AND SERIES STATE + // ======================================== + + /** + * Studies which have their series visible on-screen. + */ + const [expandedStudies, setExpandedStudies] = useImmer< + ReadonlyArray + >([]); + + /** + * The StudyInstanceUIDs of all expanded studies. + */ + const expandedStudyUids = React.useMemo( + () => expandedStudies.map((s) => s.StudyInstanceUID), + [expandedStudies], + ); + /** * List of series which are currently visible on-screen. */ @@ -194,6 +215,61 @@ const PacsController: React.FC = ({ [expandedStudies, pfdcmStudies.data], ); + const changeExpandedStudies = React.useCallback( + (pacs_name: string, StudyInstanceUIDs: ReadonlyArray) => { + setExpandedStudies( + StudyInstanceUIDs.map((StudyInstanceUID) => ({ + StudyInstanceUID, + pacs_name, + })), + ); + }, + [setExpandedStudies], + ); + + const appendExpandedStudies = React.useCallback( + (studies: Pick[]) => + setExpandedStudies((draft) => { + draft.push(...studies.map(toStudyKey)); + }), + [setExpandedStudies], + ); + + /** + * Expand the studies of the query. + */ + const expandStudiesFor = React.useCallback( + (pacs_name: string, query: PACSqueryCore) => { + if (!pfdcmStudies.data) { + throw new Error( + "Expanding studies is not currently possible because we do not " + + "have data from PFDCM yet.", + ); + } + if (query.seriesInstanceUID) { + const studies = pfdcmStudies.data + .filter(isFromPacs(pacs_name)) + .flatMap((study) => study.series) + .filter(sameSeriesInstanceUidAs(query)); + appendExpandedStudies(studies); + return; + } + if (!query.seriesInstanceUID && query.studyInstanceUID) { + const studies = pfdcmStudies.data + .filter(isFromPacs(pacs_name)) + .map((s) => s.study) + .filter(sameStudyInstanceUidAs(query)); + appendExpandedStudies(studies); + return; + } + }, + [pfdcmStudies.data, appendExpandedStudies], + ); + + // ======================================== + // CUBE QUERIES AND DATA + // ======================================== + /** * Check whether CUBE has any of the series that are expanded. */ @@ -227,6 +303,37 @@ const PacsController: React.FC = ({ })), [expandedSeries, cubeSeriesQuery], ); + // + // /** + // * Poll CUBE for the existence of DICOM series which have been reported as + // * "done" by LONK. It is necessary to poll CUBE because there will be a delay + // * between when LONK reports the series as "done" and when CUBE will run the + // * celery task of finally registering the series. + // */ + // const finalCheckNeedingSeries = useQueries({ + // queries: React.useMemo( + // () => + // receiveState.entries().map(([pacs_name, SeriesInstanceUID, state]) => ({ + // queryKey: [ + // "finalCheckNeedingSeries", + // pacs_name, + // SeriesInstanceUID, + // state, + // ], + // queryFn: async () => { + // const search = { pacs_name, SeriesInstanceUID, limit: 1 }; + // const list = await chrisClient.getPACSSeriesList(search); + // const items = list.getItems() as ReadonlyArray; + // if (items.length === 0) { + // throw Error("not found"); + // } + // return items[0]; + // }, + // enabled: state.done, // TODO CANCEL POLLING ONCE WE FOUND THE FILE. + // })), + // [receiveState], + // ), + // }); /** * Combined states of PFDCM, LONK, and CUBE into one object. @@ -356,24 +463,13 @@ const PacsController: React.FC = ({ [setPacsQuery], ); - const onStudyExpand = React.useCallback( - (pacs_name: string, StudyInstanceUIDs: ReadonlyArray) => { - setExpandedStudies( - StudyInstanceUIDs.map((StudyInstanceUID) => ({ - StudyInstanceUID, - pacs_name, - })), - ); - }, - [setExpandedStudies], - ); - // ======================================== // PACS RETRIEVAL // ======================================== const onRetrieve = React.useCallback( (service: string, query: PACSqueryCore) => { + expandStudiesFor(service, query); setPullRequests((draft) => { // indicate that the user requests for something to be retrieved. draft.push({ @@ -383,7 +479,7 @@ const PacsController: React.FC = ({ }); }); }, - [setPullRequests], + [setPullRequests, expandStudiesFor], ); /** @@ -437,12 +533,9 @@ const PacsController: React.FC = ({ if (pullRequest.state !== RequestState.NOT_REQUESTED) { return false; } - if (!studies) { - return false; - } if ( pullRequest.query.studyInstanceUID && - !pullRequest.query.seriesInstanceUID + !("seriesInstanceUID" in pullRequest.query) ) { return shouldPullStudy( pullRequest.service, @@ -457,7 +550,7 @@ const PacsController: React.FC = ({ } return false; }, - [studies], + [shouldPullStudy, shouldPullSeries], ); /** @@ -474,13 +567,22 @@ const PacsController: React.FC = ({ updatePullRequestState(service, query, { error: error }), onSuccess: (_, { service, query }) => updatePullRequestState(service, query, { state: RequestState.REQUESTED }), + onSettled: (data, error, variables, context) => { + console.dir({ + event: "settled", + data, + error, + variables, + context, + }); + }, }); React.useEffect(() => { pullRequests .filter(shouldSendPullRequest) .forEach((pr) => pullFromPacs.mutate(pr)); - }, [pullRequests]); + }, [pullRequests, shouldSendPullRequest]); // ======================================== // EFFECTS @@ -524,7 +626,8 @@ const PacsController: React.FC = ({ services={pfdcmServices.data} onSubmit={onSubmit} onRetrieve={onRetrieve} - onStudyExpand={onStudyExpand} + expandedStudyUids={expandedStudyUids} + onStudyExpand={changeExpandedStudies} isLoadingStudies={pfdcmStudies.isLoading} /> ) : ( diff --git a/src/components/Pacs/PacsView.tsx b/src/components/Pacs/PacsView.tsx index 0912673bb..046f8f1c1 100644 --- a/src/components/Pacs/PacsView.tsx +++ b/src/components/Pacs/PacsView.tsx @@ -1,21 +1,24 @@ import React from "react"; import PacsInput, { PacsInputProps } from "./components/PacsInput.tsx"; -import PacsStudiesView from "./components/PacsStudiesView.tsx"; +import PacsStudiesView, { + PacsStudiesViewProps, +} from "./components/PacsStudiesView.tsx"; import { getDefaultPacsService } from "./components/helpers.ts"; import { useSearchParams } from "react-router-dom"; import { PACSqueryCore } from "../../api/pfdcm"; import { Empty, Flex, Spin } from "antd"; import { IPacsState } from "./types.ts"; -type PacsViewProps = Pick & { - onRetrieve: (service: string, query: PACSqueryCore) => void; - onStudyExpand: ( - service: string, - StudyInstanceUIDs: ReadonlyArray, - ) => void; - state: IPacsState; - isLoadingStudies?: boolean; -}; +type PacsViewProps = Pick & + Pick & { + onRetrieve: (service: string, query: PACSqueryCore) => void; + onStudyExpand: ( + service: string, + StudyInstanceUIDs: ReadonlyArray, + ) => void; + state: IPacsState; + isLoadingStudies?: boolean; + }; /** * PACS Query and Retrieve view component. @@ -28,6 +31,7 @@ const PacsView: React.FC = ({ services, onSubmit, onRetrieve, + expandedStudyUids, onStudyExpand, isLoadingStudies, }) => { @@ -69,6 +73,7 @@ const PacsView: React.FC = ({ preferences={preferences} studies={studies} onRetrieve={curriedOnRetrieve} + expandedStudyUids={expandedStudyUids} onStudyExpand={curriedOnStudyExpand} /> diff --git a/src/components/Pacs/components/PacsStudiesView.tsx b/src/components/Pacs/components/PacsStudiesView.tsx index 501fb9fa9..5c4e929ca 100644 --- a/src/components/Pacs/components/PacsStudiesView.tsx +++ b/src/components/Pacs/components/PacsStudiesView.tsx @@ -10,12 +10,17 @@ type PacsStudiesViewProps = { preferences: PacsPreferences; studies: PacsStudyState[]; onRetrieve: (query: PACSqueryCore) => void; + /** + * List of StudyInstanceUIDs which should be expanded. + */ + expandedStudyUids?: string[]; onStudyExpand?: (StudyInstanceUIDs: ReadonlyArray) => void; }; const PacsStudiesView: React.FC = ({ studies, onRetrieve, + expandedStudyUids, onStudyExpand, preferences, }) => { @@ -66,6 +71,7 @@ const PacsStudiesView: React.FC = ({ studies.length === 1 ? [studies[0].info.StudyInstanceUID] : [] } onChange={onChange} + activeKey={expandedStudyUids} /> {numPatients === 1 ? "1 patient, " : `${numPatients} patients, `} diff --git a/src/components/Pacs/components/SeriesList.tsx b/src/components/Pacs/components/SeriesList.tsx index e1d6ff5e0..16d73b019 100644 --- a/src/components/Pacs/components/SeriesList.tsx +++ b/src/components/Pacs/components/SeriesList.tsx @@ -78,6 +78,18 @@ const SeriesRow: React.FC = ({ return "default"; }, [errors, pullState]); + const percentDone = React.useMemo(() => { + if (inCube) { + return 100; + } + if (pullState === SeriesPullState.WAITING_OR_COMPLETE) { + return 99; + } + return ( + (99 * receivedCount) / (info.NumberOfSeriesRelatedInstances || Infinity) + ); + }, [inCube, pullState, receivedCount, info.NumberOfSeriesRelatedInstances]); + return ( = ({
`${Math.round(n ?? 0)}%`} + percent={percentDone} + status={errors.length > 0 ? "exception" : undefined} />
diff --git a/src/components/Pacs/components/StudyButtons.tsx b/src/components/Pacs/components/StudyButtons.tsx index 75089573e..91d4500d7 100644 --- a/src/components/Pacs/components/StudyButtons.tsx +++ b/src/components/Pacs/components/StudyButtons.tsx @@ -16,12 +16,12 @@ const StudyButtons: React.FC = ({ tooltipPlacement = "left", onRetrieve, }) => ( - // TODO add "Create feed" button + // NOTE: buttons should call event.stopPropagation() Checking availability... + <>Working… ) : isPulled ? ( <> This study is already pulled in ChRIS. @@ -39,15 +39,21 @@ const StudyButtons: React.FC = ({ type="primary" loading={isLoading} disabled={isPulled} - onClick={onRetrieve} + onClick={(event) => { + event.stopPropagation(); + onRetrieve && onRetrieve(); + }} > - {/* FIXME CLICKING THIS BUTTON SHOULD SET EXPANDED STATE TO TRUE, INSTEAD OF TOGGLING EXPANDED STATE. */} {isLoading || } {ohifUrl && ( - diff --git a/src/components/Pacs/curry.ts b/src/components/Pacs/curry.ts new file mode 100644 index 000000000..2246c1ee3 --- /dev/null +++ b/src/components/Pacs/curry.ts @@ -0,0 +1,26 @@ +/** + * Some trivial curried functions for making array map/filter code more legible. + */ + +import { Series, Study } from "../../api/pfdcm/models.ts"; +import { PACSqueryCore } from "../../api/pfdcm"; + +function isFromPacs( + pacs_name: string, +): (s: { study: Pick }) => boolean { + return (s) => s.study.RetrieveAETitle === pacs_name; +} + +function sameSeriesInstanceUidAs( + query: Pick, +): (s: Pick) => boolean { + return (s) => s.SeriesInstanceUID === query.seriesInstanceUID; +} + +function sameStudyInstanceUidAs( + query: Pick, +): (s: Pick) => boolean { + return (s) => s.StudyInstanceUID === query.studyInstanceUID; +} + +export { isFromPacs, sameSeriesInstanceUidAs, sameStudyInstanceUidAs }; diff --git a/src/components/Pacs/helpers.ts b/src/components/Pacs/helpers.ts index 2d4051c3a..91915f268 100644 --- a/src/components/Pacs/helpers.ts +++ b/src/components/Pacs/helpers.ts @@ -1,5 +1,5 @@ import { SeriesKey, StudyKey } from "./types.ts"; -import { StudyAndSeries } from "../../api/pfdcm/models.ts"; +import { Study, StudyAndSeries } from "../../api/pfdcm/models.ts"; /** * A type subset of {@link StudyAndSeries}. @@ -43,5 +43,14 @@ function zipPacsNameAndSeriesUids( ); } +function toStudyKey( + s: Pick, +): StudyKey { + return { + StudyInstanceUID: s.StudyInstanceUID, + pacs_name: s.RetrieveAETitle, + }; +} + export type { StudyAndSeriesUidOnly }; -export { zipPacsNameAndSeriesUids }; +export { zipPacsNameAndSeriesUids, toStudyKey }; diff --git a/testing/miniChRIS b/testing/miniChRIS index a70318e5c..d5d2a28ad 160000 --- a/testing/miniChRIS +++ b/testing/miniChRIS @@ -1 +1 @@ -Subproject commit a70318e5c6c6ce3d5e9bba82302ba67d490bd0f8 +Subproject commit d5d2a28adc09e5a42df96c4e5fcd198f63c90260 From 684d06a71ec678a147e87923c0862fd946be652f Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Wed, 25 Sep 2024 16:14:05 -0400 Subject: [PATCH 252/337] Allow /srv to be non-empty --- docker-entrypoint.sh | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/docker-entrypoint.sh b/docker-entrypoint.sh index cb5175702..eb717cb1d 100755 --- a/docker-entrypoint.sh +++ b/docker-entrypoint.sh @@ -36,8 +36,7 @@ source "$env_file" target=/srv if find "$target" -mindepth 1 | grep -q .; then - echo "error: $target not empty, refusing to overwrite." - exit 1 + >&2 echo "WARNING: $target is not empty, it might contain out-of-date or otherwise stray files. If you just restarted this container, you can ignore this warning." fi # create directories in target folder From 6e75b2b90e8002ce3aee21bee87e4b2a894c1d07 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 25 Sep 2024 16:39:19 -0400 Subject: [PATCH 253/337] feat: Update dcm display for single frame and multiframe --- .../Preview/displays/DcmDisplay.tsx | 137 ++++++++++-------- .../Preview/displays/dicomUtils/utils.ts | 19 ++- 2 files changed, 87 insertions(+), 69 deletions(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index d168775ab..afb672a26 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -1,13 +1,8 @@ import type { RenderingEngine } from "@cornerstonejs/core"; -import type { FileBrowserFolderFile } from "@fnndsc/chrisapi"; import { useQuery } from "@tanstack/react-query"; import { useEffect, useRef, useState } from "react"; import { v4 } from "uuid"; -import { - FileViewerModel, - type IFileBlob, - getFileExtension, -} from "../../../api/model"; +import { type IFileBlob, getFileExtension } from "../../../api/model"; import { SpinContainer } from "../../Common"; import useSize from "../../FeedTree/useSize"; import type { ActionState } from "../FileDetailView"; @@ -49,9 +44,11 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { >(); const [currentImageIndex, setCurrentImageIndex] = useState(0); + const [multiFrameDisplay, setMultiframeDisplay] = useState(false); const [imageStack, setImageStack] = useState([]); const [renderingEngine, setRenderingEngine] = useState(); const [isLoadingMore, setIsLoadingMore] = useState(false); + const [totalImagesProcessed, setTotalImagesProcessed] = useState(0); const dicomImageRef = useRef(null); const uniqueId = `${selectedFile?.data.id || v4()}`; const elementId = `cornerstone-element-${uniqueId}`; @@ -92,28 +89,26 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { async function setupCornerstone() { const element = document.getElementById(elementId) as HTMLDivElement; if (selectedFile) { - let imageID: string; - const extension = getFileExtension(selectedFile.data.fname); await basicInit(); setUpTooling(uniqueId); - if (extension === "dcm") { - const blob = await selectedFile.getFileBlob(); - imageID = await loadDicomImage(blob); - } else { - // Code to view png and jpg file types in cornerstone. Currently we are using the default image display so this code is redundant. - // This code should be deleted in the future. - const fileviewer = new FileViewerModel(); - const fileName = fileviewer.getFileName( - selectedFile as FileBrowserFolderFile, - ); - imageID = `web:${selectedFile.url}${fileName}`; - } + const blob = await selectedFile.getFileBlob(); + const imageData = await loadDicomImage(blob); + const imageID = imageData.imageID; + const framesCount = imageData.framesCount; + const newImageStack = + framesCount > 1 + ? Array.from( + { length: framesCount }, + (_, i) => `${imageID}?frame=${i}`, + ) + : [imageID]; const { viewport, renderingEngine: newRenderingEngine } = - await displayDicomImage(element, imageID, uniqueId); + await displayDicomImage(element, newImageStack[0], uniqueId); + setMultiframeDisplay(framesCount > 1); setActiveViewport(viewport); setRenderingEngine(newRenderingEngine); - setImageStack([imageID]); - + setImageStack(newImageStack); + setTotalImagesProcessed(1); return selectedFile.data.fname; } } @@ -121,7 +116,6 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { const { isLoading } = useQuery({ queryKey: ["cornerstone-preview", selectedFile], queryFn: () => setupCornerstone(), - refetchOnMount: true, enabled: !!selectedFile, }); @@ -137,24 +131,42 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { const loadMoreImages = async (signal: AbortSignal) => { setIsLoadingMore(true); - const newImageStack = [...imageStack]; - if (list) { - for (const file of list.slice(imageStack.length)) { - if (signal.aborted) { - setIsLoadingMore(false); - return; - } - const blob = await file.getFileBlob(); - const imageId = await loadDicomImage(blob); // Load and generate the image ID - newImageStack.push(imageId); // Add the new image ID to the stack - } - setImageStack(newImageStack); + if (list && !multiFrameDisplay) { + if ( + imageStack.length > 0 && + imageStack.length !== list.length && + activeViewport + ) { + const newImageStack = []; + const filesSlice = list.slice(imageStack.length); + let imagesProcessed = totalImagesProcessed; + for (const file of filesSlice) { + imagesProcessed += 1; + if (signal.aborted) { + setIsLoadingMore(false); + return; + } + const extension = getFileExtension(file.data.fname); - if (activeViewport) { - const currentIndex = activeViewport.getCurrentImageIdIndex(); - await activeViewport.setStack(newImageStack, currentIndex); - activeViewport.render(); + if (extension !== "dcm") { + continue; + } + const blob = await file.getFileBlob(); + const imageData = await loadDicomImage(blob); // Load and generate the image ID + const imageID = imageData.imageID; + newImageStack.push(imageID); // Add the new image ID to the stack + } + setImageStack(newImageStack); + setTotalImagesProcessed(imagesProcessed); + if (activeViewport) { + const currentIndex = activeViewport.getCurrentImageIdIndex(); + await activeViewport.setStack(newImageStack, currentIndex); + activeViewport.render(); + } } + } else if (multiFrameDisplay && activeViewport) { + await activeViewport.setStack(imageStack); + activeViewport.render(); } setIsLoadingMore(false); }; @@ -162,41 +174,34 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { useEffect(() => { const controller = new AbortController(); const signal = controller.signal; - if (list) { - if ( - imageStack.length > 0 && - imageStack.length !== list.length && - activeViewport - ) { - loadMoreImages(signal); - } + if (!isLoading) { + loadMoreImages(signal); } - return () => { controller.abort(); // Abort loading images on unmount }; - }, [list, fetchMore, activeViewport]); + }, [isLoading, list, multiFrameDisplay]); useEffect(() => { if (activeViewport && list) { const element = activeViewport.element; - const handleImageRendered = (_event: any) => { const newIndex = activeViewport.getCurrentImageIdIndex(); setCurrentImageIndex(newIndex + 1); }; - const handleFetchMoreImages = (_event: any) => { - const id = activeViewport.getCurrentImageIdIndex(); - if ( - id >= Math.floor(imageStack.length / 2) && - list.length === imageStack.length && - fetchMore && - handlePagination && - !filesLoading && - !isLoadingMore - ) { - handlePagination(); + if (!multiFrameDisplay) { + const id = activeViewport.getCurrentImageIdIndex(); + if ( + id >= Math.floor(imageStack.length / 2) && + fetchMore && + handlePagination && + !filesLoading && + !isLoadingMore && + totalImagesProcessed === list.length + ) { + handlePagination(); + } } }; element.addEventListener(events.IMAGE_RENDERED, handleImageRendered); @@ -212,7 +217,13 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { ); }; } - }, [activeViewport, imageStack, fetchMore, handlePagination]); + }, [ + activeViewport, + imageStack, + fetchMore, + handlePagination, + multiFrameDisplay, + ]); return ( <> diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index 2f4703161..ba9ea42b2 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -198,8 +198,19 @@ export const handleEvents = ( } }; -export const loadDicomImage = (blob: Blob) => { - return cornerstonejsDICOMImageLoader.wadouri.fileManager.add(blob); +export const loadDicomImage = async (blob: Blob) => { + const imageID = cornerstonejsDICOMImageLoader.wadouri.fileManager.add(blob); + const image = await cornerstone.imageLoader.loadImage(imageID); + + // Detect if the DICOM is a multi-frame image + //@ts-ignore + const numberOfFrames = image.data.string("x00280008"); + const framesCount = numberOfFrames ? Number.parseInt(numberOfFrames, 10) : 1; + + return { + imageID, + framesCount, + }; }; type ImagePoint = [number, number]; @@ -269,7 +280,6 @@ export const displayDicomImage = async ( type: ViewportType.STACK, element, }; - renderingEngine.enableElement(viewportInput); toolGroup?.addViewport(viewportId, renderingEngineId); const viewport = ( @@ -278,14 +288,11 @@ export const displayDicomImage = async ( const displayArea: ViewportInputOptions = createDisplayArea(1, 0.5); viewport.setOptions(displayArea, true); viewport.setProperties(displayArea); - await viewport.setStack(imageIds); cornerstoneTools.utilities.stackPrefetch.enable(viewport.element); viewport.render(); - // Set the stack scroll mouse wheel tool toolGroup?.setToolActive(StackScrollMouseWheelTool.toolName); - return { viewport, renderingEngine, From 60cbe9d81b70b27da01b6851f7f500a859223093 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 25 Sep 2024 18:00:28 -0400 Subject: [PATCH 254/337] feat: Temp workout for dcm scroll bug --- .../Preview/displays/DcmDisplay.tsx | 29 ++++++++++++++----- 1 file changed, 22 insertions(+), 7 deletions(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index afb672a26..95ca12bb8 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -137,17 +137,25 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { imageStack.length !== list.length && activeViewport ) { - const newImageStack = []; - const filesSlice = list.slice(imageStack.length); + // Find the index of the current image ID in the list + const currentImageIndexInList = list.findIndex((file) => { + return file.data.fname === selectedFile?.data.fname; + }); + console.log("List", list, currentImageIndexInList); + const filesToLoad = [ + ...list.slice(0, currentImageIndexInList), // Files before the current image + ...list.slice(currentImageIndexInList + 1), // Files after the current image + ]; + console.log("filestoLoad", filesToLoad); + const newImageStack = [...imageStack]; let imagesProcessed = totalImagesProcessed; - for (const file of filesSlice) { + for (const file of filesToLoad) { imagesProcessed += 1; if (signal.aborted) { setIsLoadingMore(false); return; } const extension = getFileExtension(file.data.fname); - if (extension !== "dcm") { continue; } @@ -192,13 +200,20 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { const handleFetchMoreImages = (_event: any) => { if (!multiFrameDisplay) { const id = activeViewport.getCurrentImageIdIndex(); + console.log( + id >= Math.floor(imageStack.length / 2) && + fetchMore && + handlePagination && + !filesLoading && + totalImagesProcessed === list.length, + "TotalImagesProcessed", + totalImagesProcessed, + ); if ( id >= Math.floor(imageStack.length / 2) && fetchMore && handlePagination && - !filesLoading && - !isLoadingMore && - totalImagesProcessed === list.length + !filesLoading ) { handlePagination(); } From ad7fba4ff2701faec3f5c19435eb870d3c4b0a23 Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Wed, 25 Sep 2024 23:38:04 -0400 Subject: [PATCH 255/337] Everything working! I think... --- src/api/lonk/seriesMap.ts | 8 +- src/components/Pacs/PacsController.tsx | 134 ++++++++++-------- .../Pacs/components/PacsStudiesView.test.tsx | 0 .../Pacs/components/PacsStudiesView.tsx | 2 +- ...joinStates.test.ts => mergeStates.test.ts} | 41 +++++- src/components/Pacs/mergeStates.ts | 76 +++++++--- src/components/Pacs/types.ts | 20 ++- testing/miniChRIS | 2 +- 8 files changed, 193 insertions(+), 90 deletions(-) create mode 100644 src/components/Pacs/components/PacsStudiesView.test.tsx rename src/components/Pacs/{joinStates.test.ts => mergeStates.test.ts} (69%) diff --git a/src/api/lonk/seriesMap.ts b/src/api/lonk/seriesMap.ts index 55a2b0e79..da00743d0 100644 --- a/src/api/lonk/seriesMap.ts +++ b/src/api/lonk/seriesMap.ts @@ -16,7 +16,7 @@ class SeriesMap { * Get a value for a DICOM series. */ public get(pacs_name: string, SeriesInstanceUID: string): T | undefined { - const key = this.keyOf(SeriesInstanceUID, pacs_name); + const key = this.keyOf(pacs_name, SeriesInstanceUID); return this.map.get(key); } @@ -24,7 +24,7 @@ class SeriesMap { * Set a value for a DICOM series. */ public set(pacs_name: string, SeriesInstanceUID: string, value: T) { - const key = this.keyOf(SeriesInstanceUID, pacs_name); + const key = this.keyOf(pacs_name, SeriesInstanceUID); this.map.set(key, value); } @@ -32,14 +32,14 @@ class SeriesMap { * Get and remove a value for a DICOM series. */ public pop(pacs_name: string, SeriesInstanceUID: string): T | null { - const key = this.keyOf(SeriesInstanceUID, pacs_name); + const key = this.keyOf(pacs_name, SeriesInstanceUID); const value = this.map.get(key); this.map.delete(key); return value || null; } private keyOf(pacs_name: string, SeriesInstanceUID: string): string { - return JSON.stringify({ SeriesInstanceUID, pacs_name }); + return JSON.stringify({ pacs_name, SeriesInstanceUID }); } /** diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index f408eb4a9..33c77f4fb 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -18,13 +18,14 @@ import { useQueries, useQuery, } from "@tanstack/react-query"; -import mergeStates, { SeriesQueryZip } from "./mergeStates.ts"; +import { mergeStates, createCubeSeriesQueryUidMap } from "./mergeStates.ts"; import { DEFAULT_RECEIVE_STATE, IPacsState, PacsPullRequestState, ReceiveState, RequestState, + SeriesNotRegisteredError, SeriesPullState, SeriesReceiveState, StudyKey, @@ -270,10 +271,18 @@ const PacsController: React.FC = ({ // CUBE QUERIES AND DATA // ======================================== + // We have two instances of `useQueries` for checking whether DICOM series + // exists in CUBE: + // + // `cubeSeriesQueries`: initial check for existence when series is expanded, + // runs once. + // `lastCheckQueries`: final check for existence when series is done being + // received by oxidicom, polls repeatedly until found. + /** * Check whether CUBE has any of the series that are expanded. */ - const cubeSeriesQuery = useQueries({ + const cubeSeriesQueries = useQueries({ queries: expandedSeries.map((series) => ({ queryKey: ["cubeSeries", chrisClient.url, series], queryFn: async () => { @@ -281,59 +290,69 @@ const PacsController: React.FC = ({ limit: 1, ...series, }); - const items: PACSSeries[] | null = list.getItems(); + const items = list.getItems() as PACSSeries[]; // https://github.com/FNNDSC/fnndsc/issues/101 - if (items === null) { - return null; - } - return items[0] || null; + return items[0] ?? null; }, })), }); /** - * Zip together elements of `cubeSeriesQuery` and the parameters used for - * each element. + * Poll CUBE for the existence of DICOM series which have been reported as + * "done" by LONK. It is necessary to poll CUBE because there will be a delay + * between when LONK reports the series as "done" and when CUBE will run the + * celery task of finally registering the series. */ - const cubeSeriesQueryZip: ReadonlyArray = React.useMemo( - () => - expandedSeries.map((search, i) => ({ - search, - result: cubeSeriesQuery[i], - })), - [expandedSeries, cubeSeriesQuery], - ); - // - // /** - // * Poll CUBE for the existence of DICOM series which have been reported as - // * "done" by LONK. It is necessary to poll CUBE because there will be a delay - // * between when LONK reports the series as "done" and when CUBE will run the - // * celery task of finally registering the series. - // */ - // const finalCheckNeedingSeries = useQueries({ - // queries: React.useMemo( - // () => - // receiveState.entries().map(([pacs_name, SeriesInstanceUID, state]) => ({ - // queryKey: [ - // "finalCheckNeedingSeries", - // pacs_name, - // SeriesInstanceUID, - // state, - // ], - // queryFn: async () => { - // const search = { pacs_name, SeriesInstanceUID, limit: 1 }; - // const list = await chrisClient.getPACSSeriesList(search); - // const items = list.getItems() as ReadonlyArray; - // if (items.length === 0) { - // throw Error("not found"); - // } - // return items[0]; - // }, - // enabled: state.done, // TODO CANCEL POLLING ONCE WE FOUND THE FILE. - // })), - // [receiveState], - // ), - // }); + const lastCheckQueries = useQueries({ + queries: React.useMemo( + () => + receiveState.entries().map(([pacs_name, SeriesInstanceUID, state]) => ({ + queryKey: [ + "lastCheckCubeSeriesRegistration", + pacs_name, + SeriesInstanceUID, + ], + queryFn: async () => { + const search = { pacs_name, SeriesInstanceUID, limit: 1 }; + const list = await chrisClient.getPACSSeriesList(search); + const items = list.getItems() as ReadonlyArray; + if (items.length === 0) { + throw new SeriesNotRegisteredError(pacs_name, SeriesInstanceUID); + } + return items[0]; + }, + enabled: state.done, + retry: 300, + retryDelay: 2000, // TODO use environment variable + })), + [receiveState], + ), + }); + + /** + * Map for all the CUBE queries for PACSSeries existence. + */ + const allCubeSeriesQueryMap = React.useMemo(() => { + const lastCheckParams = receiveState + .entries() + .map(([pacs_name, SeriesInstanceUID]) => ({ + pacs_name, + SeriesInstanceUID, + })); + const lastCheckQueriesMap = createCubeSeriesQueryUidMap( + lastCheckParams, + lastCheckQueries, + ); + const firstCheckQueriesMap = createCubeSeriesQueryUidMap( + expandedSeries, + cubeSeriesQueries, + ); + return new Map([...firstCheckQueriesMap, ...lastCheckQueriesMap]); + }, [receiveState, lastCheckQueries, expandedSeries, cubeSeriesQueries]); + + // ======================================== + // COMBINED STATE OF EVERYTHING + // ======================================== /** * Combined states of PFDCM, LONK, and CUBE into one object. @@ -345,10 +364,16 @@ const PacsController: React.FC = ({ return mergeStates( pfdcmStudies.data, pullRequests, - cubeSeriesQueryZip, + allCubeSeriesQueryMap, receiveState, ); - }, [mergeStates, pfdcmStudies, cubeSeriesQueryZip, receiveState]); + }, [ + mergeStates, + pfdcmStudies.data, + pullRequests, + allCubeSeriesQueryMap, + receiveState, + ]); /** * Entire state of the Pacs Q/R application. @@ -567,15 +592,6 @@ const PacsController: React.FC = ({ updatePullRequestState(service, query, { error: error }), onSuccess: (_, { service, query }) => updatePullRequestState(service, query, { state: RequestState.REQUESTED }), - onSettled: (data, error, variables, context) => { - console.dir({ - event: "settled", - data, - error, - variables, - context, - }); - }, }); React.useEffect(() => { diff --git a/src/components/Pacs/components/PacsStudiesView.test.tsx b/src/components/Pacs/components/PacsStudiesView.test.tsx new file mode 100644 index 000000000..e69de29bb diff --git a/src/components/Pacs/components/PacsStudiesView.tsx b/src/components/Pacs/components/PacsStudiesView.tsx index 5c4e929ca..8d81a12d6 100644 --- a/src/components/Pacs/components/PacsStudiesView.tsx +++ b/src/components/Pacs/components/PacsStudiesView.tsx @@ -34,7 +34,7 @@ const PacsStudiesView: React.FC = ({ isPulled={ series.length === 0 ? true - : !series.find(({ inCube }) => inCube === null) + : series.every(({ inCube }) => inCube !== null) } isLoading={ series.length === 0 ? false : !!series.find(isSeriesLoading) diff --git a/src/components/Pacs/joinStates.test.ts b/src/components/Pacs/mergeStates.test.ts similarity index 69% rename from src/components/Pacs/joinStates.test.ts rename to src/components/Pacs/mergeStates.test.ts index e57d0bab2..c07afa1a9 100644 --- a/src/components/Pacs/joinStates.test.ts +++ b/src/components/Pacs/mergeStates.test.ts @@ -1,8 +1,14 @@ import { expect, test } from "vitest"; -import { pullStateOf } from "./mergeStates.ts"; +import { + createCubeSeriesQueryUidMap, + pullStateOf, + UseQueryResultLike, +} from "./mergeStates.ts"; import { DEFAULT_RECEIVE_STATE, RequestState, + SeriesKey, + SeriesNotRegisteredError, SeriesPullState, SeriesReceiveState, } from "./types.ts"; @@ -147,3 +153,36 @@ test.each(< expect(actual).toStrictEqual(expected); }, ); + +test("createCubeSeriesQueryUidMap", () => { + const params: ReadonlyArray = [ + { pacs_name: "MyPACS", SeriesInstanceUID: "1.2.345" }, + { pacs_name: "MyPACS", SeriesInstanceUID: "1.2.678" }, + { pacs_name: "MyPACS", SeriesInstanceUID: "1.2.910" }, + { pacs_name: "MyPACS", SeriesInstanceUID: "1.2.123" }, + ]; + const queries: ReadonlyArray = [ + { + isError: false, + error: null, + }, + { + isError: true, + error: new Error("i am some other error"), + }, + { + isError: true, + error: new SeriesNotRegisteredError("MyPACS", "1.2.910"), + }, + { + isError: false, + error: null, + }, + ]; + const actual = createCubeSeriesQueryUidMap(params, queries); + expect(actual.get(params[0].SeriesInstanceUID)).toBe(queries[0]); + expect(actual.get(params[1].SeriesInstanceUID)).toBe(queries[1]); + expect(actual.get(params[3].SeriesInstanceUID)).toBe(queries[3]); + expect(actual.size).toBe(3); + expect(actual.values()).not.toContain(queries[2]); +}); diff --git a/src/components/Pacs/mergeStates.ts b/src/components/Pacs/mergeStates.ts index 1f1eace37..ddfbef958 100644 --- a/src/components/Pacs/mergeStates.ts +++ b/src/components/Pacs/mergeStates.ts @@ -5,49 +5,46 @@ import { ReceiveState, RequestState, SeriesKey, + SeriesNotRegisteredError, SeriesPullState, SeriesReceiveState, } from "./types.ts"; import { Series, StudyAndSeries } from "../../api/pfdcm/models.ts"; -import { UseQueryResult } from "@tanstack/react-query"; +import { useQuery, UseQueryResult } from "@tanstack/react-query"; import { PACSSeries } from "@fnndsc/chrisapi"; -type PACSSeriesQueryResult = UseQueryResult; - -type SeriesQueryZip = { - search: SeriesKey; - result: PACSSeriesQueryResult; -}; +type UseQueryResultLike = Partial< + Pick +>; /** * Fragments of the state of a DICOM series exists remotely in three places: * PFDCM, CUBE, and LONK. * * Merge the states from those places into one mega-object. + * + * @param pfdcm PACS query response from PFDCM + * @param pullRequests state of the PACS pull requests to PFDCM + * @param cubeQueryMap mapping of `SeriesInstanceUID` to queries for respective + * {@link PACSSeries} in CUBE (hint: call + * {@link createCubeSeriesQueryUidMap}) + * @param receiveState state of DICOM receive operation conveyed via LONK */ function mergeStates( pfdcm: ReadonlyArray, pullRequests: ReadonlyArray, - cubeSeriesQuery: ReadonlyArray, + cubeQueryMap: Map>, receiveState: ReceiveState, ): PacsStudyState[] { - const cubeSeriesMap = new Map( - cubeSeriesQuery.map(({ search, result }) => [ - search.SeriesInstanceUID, - result, - ]), - ); return pfdcm.map(({ study, series }) => { return { info: study, series: series.map((info) => { - const cubeQueryResult = cubeSeriesMap.get(info.SeriesInstanceUID); - const cubeErrors = - cubeQueryResult && cubeQueryResult.error - ? [cubeQueryResult.error.message] - : []; + const cubeQueryResult = cubeQueryMap.get(info.SeriesInstanceUID); + const cubeError = cubeQueryResult?.error; + const cubeErrors = cubeError ? [cubeError.message] : []; const state = - receiveState.get(info.RetrieveAETitle, info.SeriesInstanceUID) || + receiveState.get(info.RetrieveAETitle, info.SeriesInstanceUID) ?? DEFAULT_RECEIVE_STATE; const pullRequestsForSeries = pullRequests.findLast((pr) => isRequestFor(pr, info), @@ -68,6 +65,40 @@ function mergeStates( }); } +/** + * Reshape queries and the parameters used for each query to a map + * where the key is `SeriesInstanceUID`. + * + * Also removes entries where the query is pending or the error is + * {@link SeriesNotRegisteredError}. + * + * @param params {@link useQuery} parameters + * @param queries the React "hook" returned by {@link useQuery} + */ +function createCubeSeriesQueryUidMap( + params: ReadonlyArray, + queries: ReadonlyArray, +): Map { + const entries = zipArray(params, queries) + .filter(([_, query]) => !query.isPending && !isNotRegisteredError(query)) + .map(([p, q]): [string, T] => [p.SeriesInstanceUID, q]); + return new Map(entries); +} + +function zipArray( + a: ReadonlyArray, + b: ReadonlyArray, +): ReadonlyArray<[A, B]> { + if (a.length !== b.length) { + throw new Error(`Array lengths are different (${a.length} != ${b.length})`); + } + return a.map((item, i) => [item, b[i]]); +} + +function isNotRegisteredError(q: UseQueryResultLike): boolean { + return Boolean(q.isError) && q.error instanceof SeriesNotRegisteredError; +} + /** * @returns `true` if the query matches the series. */ @@ -131,6 +162,5 @@ function pullStateOf( return SeriesPullState.WAITING_OR_COMPLETE; } -export type { SeriesQueryZip }; -export { pullStateOf }; -export default mergeStates; +export type { UseQueryResultLike }; +export { mergeStates, pullStateOf, createCubeSeriesQueryUidMap }; diff --git a/src/components/Pacs/types.ts b/src/components/Pacs/types.ts index 79dadafe4..1a39e010a 100644 --- a/src/components/Pacs/types.ts +++ b/src/components/Pacs/types.ts @@ -13,6 +13,19 @@ type SeriesKey = { SeriesInstanceUID: string; }; +/** + * Indicates DICOM series has not yet been registered by CUBE. + */ +class SeriesNotRegisteredError extends Error { + public readonly pacs_name: string; + public readonly SeriesInstanceUID: string; + public constructor(pacs_name: string, SeriesInstanceUID: string) { + super(); + this.pacs_name = pacs_name; + this.SeriesInstanceUID = SeriesInstanceUID; + } +} + /** * The states which a DICOM series can be in. */ @@ -135,7 +148,12 @@ interface IPacsState { studies: PacsStudyState[] | null; } -export { SeriesPullState, RequestState, DEFAULT_RECEIVE_STATE }; +export { + SeriesPullState, + RequestState, + DEFAULT_RECEIVE_STATE, + SeriesNotRegisteredError, +}; export type { StudyKey, SeriesKey, diff --git a/testing/miniChRIS b/testing/miniChRIS index d5d2a28ad..f71bfc274 160000 --- a/testing/miniChRIS +++ b/testing/miniChRIS @@ -1 +1 @@ -Subproject commit d5d2a28adc09e5a42df96c4e5fcd198f63c90260 +Subproject commit f71bfc27455cd87802208a3041647b1bc31b5ede From a74ae257711d7e37f6e80b807d20cef95df870ac Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Thu, 26 Sep 2024 00:09:07 -0400 Subject: [PATCH 256/337] Customize progress bar theme --- src/App.tsx | 10 ++++++++++ src/components/Pacs/components/SeriesList.tsx | 6 +++++- 2 files changed, 15 insertions(+), 1 deletion(-) diff --git a/src/App.tsx b/src/App.tsx index f316263e5..0c579847d 100644 --- a/src/App.tsx +++ b/src/App.tsx @@ -60,6 +60,16 @@ function App(props: AllProps) { algorithm: isDarkTheme ? theme.darkAlgorithm : theme.defaultAlgorithm, + token: { + // var(--pf-v5-global--primary-color--200) + colorSuccess: "#004080", + }, + components: { + Progress: { + // var(--pf-v5-global--primary-color--100) + defaultColor: "#0066CC", + }, + }, }} > diff --git a/src/components/Pacs/components/SeriesList.tsx b/src/components/Pacs/components/SeriesList.tsx index 16d73b019..084276bdf 100644 --- a/src/components/Pacs/components/SeriesList.tsx +++ b/src/components/Pacs/components/SeriesList.tsx @@ -115,11 +115,14 @@ const SeriesRow: React.FC = ({
+ {/* TODO Progress 100% text color should be changed from dark blue */} `${Math.round(n ?? 0)}%`} percent={percentDone} - status={errors.length > 0 ? "exception" : undefined} + status={ + errors.length > 0 ? "exception" : inCube ? "success" : "normal" + } />
@@ -129,6 +132,7 @@ const SeriesRow: React.FC = ({ disabled={pullState !== SeriesPullState.READY} color={buttonColor} > + {/* TODO Button width is different if isLoading */} {errors.length > 1 ? ( ) : isLoading ? ( From 2df2851611811480cf20ef37cfc466e3b5b04721 Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Thu, 26 Sep 2024 00:28:32 -0400 Subject: [PATCH 257/337] Implement series pull --- src/components/Pacs/PacsController.tsx | 2 +- .../Pacs/components/PacsStudiesView.tsx | 13 +++++- src/components/Pacs/components/SeriesList.tsx | 40 ++++++++++++------- src/components/Pacs/types.ts | 10 ++--- 4 files changed, 43 insertions(+), 22 deletions(-) diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index 33c77f4fb..705858005 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -544,7 +544,7 @@ const PacsController: React.FC = ({ ({ info, pullState }) => info.RetrieveAETitle === pacs_name && info.SeriesInstanceUID === SeriesInstanceUID && - pullState === SeriesPullState.READY, + pullState === SeriesPullState.PULLING, ) !== -1, [allSeries], ); diff --git a/src/components/Pacs/components/PacsStudiesView.tsx b/src/components/Pacs/components/PacsStudiesView.tsx index 8d81a12d6..b4ba3bace 100644 --- a/src/components/Pacs/components/PacsStudiesView.tsx +++ b/src/components/Pacs/components/PacsStudiesView.tsx @@ -47,7 +47,18 @@ const PacsStudiesView: React.FC = ({ } > ), - children: , + children: ( + + onRetrieve({ + patientID: info.PatientID, + seriesInstanceUID: info.SeriesInstanceUID, + }) + } + /> + ), }; }); }, [studies]); diff --git a/src/components/Pacs/components/SeriesList.tsx b/src/components/Pacs/components/SeriesList.tsx index 084276bdf..61d741950 100644 --- a/src/components/Pacs/components/SeriesList.tsx +++ b/src/components/Pacs/components/SeriesList.tsx @@ -16,13 +16,15 @@ import styles from "./SeriesList.module.css"; import React from "react"; import { isSeriesLoading } from "./helpers.ts"; -type SeriesTableProps = { +type SeriesListProps = { states: PacsSeriesState[]; showUid?: boolean; + onRetrieve?: (state: PacsSeriesState) => void; }; type SeriesRowProps = PacsSeriesState & { showUid?: boolean; + onRetrieve?: () => void; }; const SeriesRow: React.FC = ({ @@ -32,6 +34,7 @@ const SeriesRow: React.FC = ({ inCube, receivedCount, showUid, + onRetrieve, }) => { const isLoading = React.useMemo( () => isSeriesLoading({ pullState, inCube }), @@ -131,6 +134,7 @@ const SeriesRow: React.FC = ({ loading={isLoading} disabled={pullState !== SeriesPullState.READY} color={buttonColor} + onClick={onRetrieve} > {/* TODO Button width is different if isLoading */} {errors.length > 1 ? ( @@ -154,19 +158,25 @@ const SeriesRow: React.FC = ({ ); }; -const SeriesList: React.FC = ({ states, showUid }) => { - return ( - ( - - - - )} - rowKey={(state) => state.info.SeriesInstanceUID} - size="small" - /> - ); -}; +const SeriesList: React.FC = ({ + states, + showUid, + onRetrieve, +}) => ( + ( + + onRetrieve && onRetrieve(s)} + {...s} + /> + + )} + rowKey={(state) => state.info.SeriesInstanceUID} + size="small" + /> +); export default SeriesList; diff --git a/src/components/Pacs/types.ts b/src/components/Pacs/types.ts index 1a39e010a..64d54b6c8 100644 --- a/src/components/Pacs/types.ts +++ b/src/components/Pacs/types.ts @@ -33,23 +33,23 @@ enum SeriesPullState { /** * Unknown whether series is available in CUBE. */ - NOT_CHECKED, + NOT_CHECKED = "not checked", /** * Currently checking for availability in CUBE. */ - CHECKING, + CHECKING = "checking", /** * Ready to be pulled. */ - READY, + READY = "ready", /** * Being pulled by oxidicom. */ - PULLING, + PULLING = "pulling", /** * Done being received by oxidicom, but may or not yet ready in CUBE. */ - WAITING_OR_COMPLETE, + WAITING_OR_COMPLETE = "waiting or complete", } /** From e8ddeef454abf74905fa4ab4d28cc5e345c8270b Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Thu, 26 Sep 2024 00:44:35 -0400 Subject: [PATCH 258/337] Fix crash on invalid StudyDate --- src/components/Pacs/components/StudyDetails.tsx | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/src/components/Pacs/components/StudyDetails.tsx b/src/components/Pacs/components/StudyDetails.tsx index 2c1b68d72..e0dc62383 100644 --- a/src/components/Pacs/components/StudyDetails.tsx +++ b/src/components/Pacs/components/StudyDetails.tsx @@ -14,7 +14,7 @@ const StudyDetails: React.FC<{ Study "{study.StudyDescription}"{" "} - on {study.StudyDate ? format(study.StudyDate, dateFormat) : "unknown"}{" "} + on {formatDate(study.StudyDate, dateFormat)}{" "} {study.AccessionNumber && !study.AccessionNumber.includes("no value provided") && ( <>(AccessionNumber: {study.AccessionNumber}) @@ -72,4 +72,16 @@ function formatPypxSex(dicomSex: string) { } } +function formatDate(date: Date | undefined | null, dateFormat: string) { + if (!date) { + return "unknown date"; + } + try { + return format(date, dateFormat); + } catch (_e) { + // invalid date + return "unknown date"; + } +} + export default StudyDetails; From 27db1fc2aa42329d2be6d275dedf54e209863717 Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Thu, 26 Sep 2024 00:57:24 -0400 Subject: [PATCH 259/337] Add test stub --- src/components/Pacs/components/PacsStudiesView.test.tsx | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/components/Pacs/components/PacsStudiesView.test.tsx b/src/components/Pacs/components/PacsStudiesView.test.tsx index e69de29bb..2df7e20e2 100644 --- a/src/components/Pacs/components/PacsStudiesView.test.tsx +++ b/src/components/Pacs/components/PacsStudiesView.test.tsx @@ -0,0 +1,3 @@ +import { test, expect } from "vitest"; + +test.skip("PacsStudiesView", () => {}); From 1d0131c8b1e5749d0f25799eca43699950eeb4af Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 26 Sep 2024 12:30:27 -0400 Subject: [PATCH 260/337] feat: Improve lazy loading of files in cornerstone --- .../Preview/displays/DcmDisplay.tsx | 114 ++++++++++-------- 1 file changed, 61 insertions(+), 53 deletions(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 95ca12bb8..13d338664 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -42,13 +42,13 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { const [activeViewport, setActiveViewport] = useState< IStackViewport | undefined >(); - const [currentImageIndex, setCurrentImageIndex] = useState(0); const [multiFrameDisplay, setMultiframeDisplay] = useState(false); const [imageStack, setImageStack] = useState([]); const [renderingEngine, setRenderingEngine] = useState(); + const [loadedIndexes, setLoadedIndexes] = useState>(new Set()); const [isLoadingMore, setIsLoadingMore] = useState(false); - const [totalImagesProcessed, setTotalImagesProcessed] = useState(0); + const [lastProcessedIndex, setLastProcessedIndex] = useState(0); const dicomImageRef = useRef(null); const uniqueId = `${selectedFile?.data.id || v4()}`; const elementId = `cornerstone-element-${uniqueId}`; @@ -108,7 +108,14 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { setActiveViewport(viewport); setRenderingEngine(newRenderingEngine); setImageStack(newImageStack); - setTotalImagesProcessed(1); + const currentIndex = list?.findIndex( + (file) => file.data.fname === selectedFile.data.fname, + ); + if (currentIndex) { + const newSet = new Set(loadedIndexes); + setLoadedIndexes(newSet.add(currentIndex)); + setLastProcessedIndex(currentIndex); + } return selectedFile.data.fname; } } @@ -129,54 +136,63 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { handleResize(); }, [size]); - const loadMoreImages = async (signal: AbortSignal) => { + const loadImage = async (file: IFileBlob): Promise => { + const fileName = file.data.fname; + const extension = getFileExtension(fileName); + if (extension !== "dcm") return null; + const blob = await file.getFileBlob(); + const imageData = await loadDicomImage(blob); + return imageData.imageID; + }; + + const loadImagesInDirection = async ( + direction: "forward" | "backward", + signal: AbortSignal, + ) => { setIsLoadingMore(true); if (list && !multiFrameDisplay) { - if ( - imageStack.length > 0 && - imageStack.length !== list.length && - activeViewport - ) { - // Find the index of the current image ID in the list - const currentImageIndexInList = list.findIndex((file) => { - return file.data.fname === selectedFile?.data.fname; - }); - console.log("List", list, currentImageIndexInList); - const filesToLoad = [ - ...list.slice(0, currentImageIndexInList), // Files before the current image - ...list.slice(currentImageIndexInList + 1), // Files after the current image - ]; - console.log("filestoLoad", filesToLoad); - const newImageStack = [...imageStack]; - let imagesProcessed = totalImagesProcessed; - for (const file of filesToLoad) { - imagesProcessed += 1; - if (signal.aborted) { - setIsLoadingMore(false); - return; + const newImageStack = [...imageStack]; + const step = direction === "forward" ? 1 : -1; + const endCondition = (i: number) => + direction === "forward" ? i < list.length : i >= 0; + const startIndex = + direction === "forward" + ? lastProcessedIndex + 1 + : lastProcessedIndex - 1; + const newLoadedIndexes = new Set(loadedIndexes); + for (let i = startIndex; endCondition(i) && !signal.aborted; i += step) { + if (newLoadedIndexes.has(i)) continue; + const imageID = await loadImage(list[i]); + if (imageID) { + if (direction === "forward") { + newImageStack.push(imageID); + } else { + newImageStack.unshift(imageID); } - const extension = getFileExtension(file.data.fname); - if (extension !== "dcm") { - continue; - } - const blob = await file.getFileBlob(); - const imageData = await loadDicomImage(blob); // Load and generate the image ID - const imageID = imageData.imageID; - newImageStack.push(imageID); // Add the new image ID to the stack - } - setImageStack(newImageStack); - setTotalImagesProcessed(imagesProcessed); - if (activeViewport) { - const currentIndex = activeViewport.getCurrentImageIdIndex(); - await activeViewport.setStack(newImageStack, currentIndex); - activeViewport.render(); + newLoadedIndexes.add(i); } } - } else if (multiFrameDisplay && activeViewport) { + setImageStack([...newImageStack]); + setLoadedIndexes(new Set(newLoadedIndexes)); + setLastProcessedIndex(direction === "forward" ? list.length - 1 : 0); + if (activeViewport) { + await activeViewport.setStack(newImageStack, currentImageIndex); + activeViewport.render(); + } + } + setIsLoadingMore(false); + }; + + const loadMoreImages = async (signal: AbortSignal) => { + if (multiFrameDisplay && activeViewport) { await activeViewport.setStack(imageStack); activeViewport.render(); + } else { + await Promise.all([ + loadImagesInDirection("forward", signal), + loadImagesInDirection("backward", signal), + ]); } - setIsLoadingMore(false); }; useEffect(() => { @@ -200,20 +216,12 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { const handleFetchMoreImages = (_event: any) => { if (!multiFrameDisplay) { const id = activeViewport.getCurrentImageIdIndex(); - console.log( - id >= Math.floor(imageStack.length / 2) && - fetchMore && - handlePagination && - !filesLoading && - totalImagesProcessed === list.length, - "TotalImagesProcessed", - totalImagesProcessed, - ); if ( id >= Math.floor(imageStack.length / 2) && fetchMore && handlePagination && - !filesLoading + !filesLoading && + lastProcessedIndex === list.length - 1 ) { handlePagination(); } From 5f99267938351bee7ee6027a16505eec65b4eac2 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Thu, 26 Sep 2024 17:29:01 -0400 Subject: [PATCH 261/337] fix: Fix the bug in dicom scrolling --- .../Preview/displays/DcmDisplay.tsx | 189 +++++++++--------- 1 file changed, 90 insertions(+), 99 deletions(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 13d338664..958318744 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -12,12 +12,12 @@ import { basicInit, cleanupCornerstoneTooling, displayDicomImage, - handleEvents, loadDicomImage, registerToolingOnce, removeTools, setUpTooling, } from "./dicomUtils/utils"; +import { handleEvents } from "./dicomUtils/utils"; export type DcmImageProps = { selectedFile?: IFileBlob; @@ -39,6 +39,7 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { handlePagination, filesLoading, } = props; + const [activeViewport, setActiveViewport] = useState< IStackViewport | undefined >(); @@ -46,16 +47,15 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { const [multiFrameDisplay, setMultiframeDisplay] = useState(false); const [imageStack, setImageStack] = useState([]); const [renderingEngine, setRenderingEngine] = useState(); - const [loadedIndexes, setLoadedIndexes] = useState>(new Set()); - const [isLoadingMore, setIsLoadingMore] = useState(false); - const [lastProcessedIndex, setLastProcessedIndex] = useState(0); + const [isLoadingImages, setIsLoadingImages] = useState(true); + const [lastProcessedIndex, setLastProcessedIndex] = useState(0); // Track last processed file index + const dicomImageRef = useRef(null); const uniqueId = `${selectedFile?.data.id || v4()}`; const elementId = `cornerstone-element-${uniqueId}`; - const size = useSize(dicomImageRef); // Use the useSize hook with dicomImageRef + const size = useSize(dicomImageRef); const handleResize = () => { - // Update the element with elementId when the size of dicomImageRef changes if (dicomImageRef.current && size) { const parentWidth = size.width; const parentHeight = size.height; @@ -74,10 +74,9 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { return () => { window.removeEventListener("resize", handleResize); }; - }, []); + }, [size, renderingEngine, activeViewport]); useEffect(() => { - //Global registration needs to happen once registerToolingOnce(); return () => { renderingEngine?.destroy(); @@ -102,27 +101,22 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { (_, i) => `${imageID}?frame=${i}`, ) : [imageID]; + const { viewport, renderingEngine: newRenderingEngine } = await displayDicomImage(element, newImageStack[0], uniqueId); + setMultiframeDisplay(framesCount > 1); setActiveViewport(viewport); setRenderingEngine(newRenderingEngine); setImageStack(newImageStack); - const currentIndex = list?.findIndex( - (file) => file.data.fname === selectedFile.data.fname, - ); - if (currentIndex) { - const newSet = new Set(loadedIndexes); - setLoadedIndexes(newSet.add(currentIndex)); - setLastProcessedIndex(currentIndex); - } + setIsLoadingImages(false); return selectedFile.data.fname; } } const { isLoading } = useQuery({ queryKey: ["cornerstone-preview", selectedFile], - queryFn: () => setupCornerstone(), + queryFn: setupCornerstone, enabled: !!selectedFile, }); @@ -145,112 +139,114 @@ const DcmDisplay: React.FC = (props: DcmImageProps) => { return imageData.imageID; }; - const loadImagesInDirection = async ( - direction: "forward" | "backward", - signal: AbortSignal, - ) => { - setIsLoadingMore(true); - if (list && !multiFrameDisplay) { - const newImageStack = [...imageStack]; - const step = direction === "forward" ? 1 : -1; - const endCondition = (i: number) => - direction === "forward" ? i < list.length : i >= 0; - const startIndex = - direction === "forward" - ? lastProcessedIndex + 1 - : lastProcessedIndex - 1; - const newLoadedIndexes = new Set(loadedIndexes); - for (let i = startIndex; endCondition(i) && !signal.aborted; i += step) { - if (newLoadedIndexes.has(i)) continue; - const imageID = await loadImage(list[i]); - if (imageID) { - if (direction === "forward") { - newImageStack.push(imageID); - } else { - newImageStack.unshift(imageID); + async function* imageBatchGenerator( + start: number, + end: number, + skipIndex: number, + ) { + if (list) { + for (let i = start; i < end; i++) { + // Skip already loaded file + if (i === skipIndex) continue; + + const file = list[i]; + if (file) { + const imageID = await loadImage(file); + if (imageID) { + yield imageID; // Yield the image ID one by one } - newLoadedIndexes.add(i); } } - setImageStack([...newImageStack]); - setLoadedIndexes(new Set(newLoadedIndexes)); - setLastProcessedIndex(direction === "forward" ? list.length - 1 : 0); + } + } + + const loadImagesInBatches = async ( + start: number, + end: number, + skipIndex: number, + ) => { + const generator = imageBatchGenerator(start, end, skipIndex); + const newImageStack: string[] = []; // Temporary stack to hold new images + + for await (const newImage of generator) { + newImageStack.push(newImage); + } + + // Once all images are loaded, update the imageStack and the viewport + setImageStack((prevStack) => { + const updatedStack = [...prevStack, ...newImageStack]; + + // Update the viewport with the entire stack if (activeViewport) { - await activeViewport.setStack(newImageStack, currentImageIndex); + const currentIndex = activeViewport.getCurrentImageIdIndex(); + activeViewport.setStack(updatedStack, currentIndex); activeViewport.render(); } + + return updatedStack; // Update the state with the full stack + }); + }; + + const loadAllImages = async () => { + if (list && !multiFrameDisplay && !isLoading) { + const selectedIndex = list.findIndex( + (file) => file.data.fname === selectedFile?.data.fname, + ); + await loadImagesInBatches(lastProcessedIndex, list.length, selectedIndex); + setLastProcessedIndex(list.length); // Update the last processed index } - setIsLoadingMore(false); }; - const loadMoreImages = async (signal: AbortSignal) => { - if (multiFrameDisplay && activeViewport) { - await activeViewport.setStack(imageStack); + const loadMultiFrames = async () => { + if (activeViewport) { + const currentIndex = activeViewport.getCurrentImageIdIndex(); + await activeViewport.setStack(imageStack, currentIndex); activeViewport.render(); - } else { - await Promise.all([ - loadImagesInDirection("forward", signal), - loadImagesInDirection("backward", signal), - ]); } }; useEffect(() => { - const controller = new AbortController(); - const signal = controller.signal; - if (!isLoading) { - loadMoreImages(signal); + if (list && !multiFrameDisplay) { + loadAllImages(); + } else if (multiFrameDisplay) { + loadMultiFrames(); } - return () => { - controller.abort(); // Abort loading images on unmount - }; - }, [isLoading, list, multiFrameDisplay]); + }, [isLoading, list, activeViewport, multiFrameDisplay]); useEffect(() => { - if (activeViewport && list) { + if ( + list && + fetchMore && + handlePagination && + !filesLoading && + lastProcessedIndex === list.length - 1 + ) { + handlePagination(); + } + }, [fetchMore, handlePagination, filesLoading]); + + useEffect(() => { + if (activeViewport && list && handlePagination) { const element = activeViewport.element; - const handleImageRendered = (_event: any) => { + const handleImageRendered = () => { const newIndex = activeViewport.getCurrentImageIdIndex(); setCurrentImageIndex(newIndex + 1); - }; - const handleFetchMoreImages = (_event: any) => { - if (!multiFrameDisplay) { - const id = activeViewport.getCurrentImageIdIndex(); - if ( - id >= Math.floor(imageStack.length / 2) && - fetchMore && - handlePagination && - !filesLoading && - lastProcessedIndex === list.length - 1 - ) { - handlePagination(); - } + if (newIndex >= list.length - 5 && fetchMore && !filesLoading) { + handlePagination(); } }; element.addEventListener(events.IMAGE_RENDERED, handleImageRendered); - element.addEventListener( - events.STACK_VIEWPORT_SCROLL, - handleFetchMoreImages, - ); return () => { element.removeEventListener(events.IMAGE_RENDERED, handleImageRendered); - element.removeEventListener( - events.STACK_VIEWPORT_SCROLL, - handleFetchMoreImages, - ); }; } - }, [ - activeViewport, - imageStack, - fetchMore, - handlePagination, - multiFrameDisplay, - ]); + }, [activeViewport, imageStack, fetchMore, filesLoading]); return ( <> - {isLoading && } + {(isLoading || isLoadingImages) && ( + + )}
= (props: DcmImageProps) => { zIndex: "99999", }} > - {isLoadingMore ? ( - Loading More Images... - ) : ( - `Images Loaded: ${currentImageIndex}/${imageStack.length}` - )} + {`Images Loaded: ${currentImageIndex}/${imageStack.length}`}
-
From 4f94174f0ef261afd865a2bce3aecd7a5c35322a Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 27 Sep 2024 14:27:46 -0400 Subject: [PATCH 262/337] feat: Update the pipeline page to read from the configured url --- src/components/PipelinesCopy/PipelineUpload.tsx | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/src/components/PipelinesCopy/PipelineUpload.tsx b/src/components/PipelinesCopy/PipelineUpload.tsx index 6be197c44..daf58fc41 100644 --- a/src/components/PipelinesCopy/PipelineUpload.tsx +++ b/src/components/PipelinesCopy/PipelineUpload.tsx @@ -11,6 +11,7 @@ import { uploadPipelineSourceFile, extractPluginInfo, } from "./utils"; +import { Cookies } from "react-cookie"; interface Notification { type: "warning" | "success" | "info" | "error" | undefined; @@ -22,6 +23,7 @@ const PipelineUpload = ({ }: { fetchPipelinesAgain: () => void; }) => { + const cookies = new Cookies(); const fileInput = useRef(null); const [notification, setNotification] = useState({ type: undefined, @@ -40,7 +42,8 @@ const PipelineUpload = ({ description: `Installing plugin: ${name} version: ${version}`, }); - const storeUrl = import.meta.env.VITE_CHRIS_STORE_URL; + const storeUrl = + cookies.get("configure_url") || import.meta.env.VITE_CHRIS_STORE_URL; if (!storeUrl) { throw new Error("Failed to connect to a remote store"); } From d3a0301b56582c6e5a5edbe5f3ee268921a1ad3a Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 27 Sep 2024 14:41:03 -0400 Subject: [PATCH 263/337] feat: Error Handling in the pipelines page --- .../PipelinesCopy/PipelineUpload.tsx | 33 +++++++++++++------ 1 file changed, 23 insertions(+), 10 deletions(-) diff --git a/src/components/PipelinesCopy/PipelineUpload.tsx b/src/components/PipelinesCopy/PipelineUpload.tsx index daf58fc41..98268a6c5 100644 --- a/src/components/PipelinesCopy/PipelineUpload.tsx +++ b/src/components/PipelinesCopy/PipelineUpload.tsx @@ -98,6 +98,9 @@ const PipelineUpload = ({ retryUploadFile = false; // Exit the loop if the upload was successful } catch (error) { + // Set retryUploadFile to false for unexpected errors + retryUploadFile = false; + if (axios.isAxiosError(error)) { const errorDictionary = error.response?.data; @@ -109,14 +112,11 @@ const PipelineUpload = ({ type: "error", description: `Error: ${message}.`, }); - retryUploadFile = false; - } - - if (!isEmpty(errorDictionary?.plugin_tree)) { - // This handles the case when the pipeline has plugins with versions missing in the store. CUBE throws missing plugin errors one at a time, so we reattempt the upload and install the missing plugins until the pipeline is uploaded successfully. + } else if (!isEmpty(errorDictionary?.plugin_tree)) { + // Handle missing plugin errors, reattempt the upload if possible const plugin_tree_errors = errorDictionary.plugin_tree; - // Extract the missing plugin's name and version from the error message const extractedInfo = extractPluginInfo(plugin_tree_errors[0]); + if (extractedInfo) { const { name, version } = extractedInfo; @@ -126,24 +126,35 @@ const PipelineUpload = ({ }); try { - // Attempt to install the plugin from the registered store + // Attempt to install the plugin await installPlugin(name, version); + // Retry file upload after successful plugin installation + retryUploadFile = true; // Allow retrying if plugin installation succeeds } catch (installError: any) { setNotification({ type: "error", description: `Failed to install plugin "${name}" version "${version}". ${installError.message}. You may need to connect to a different store to install this plugin.`, }); - retryUploadFile = false; // Stop retrying if plugin installation fails } + } else { + setNotification({ + type: "error", + description: `${plugin_tree_errors[0]}`, + }); } + } else { + // Handle unexpected errors + setNotification({ + type: "error", + description: "An unexpected error occurred", + }); } } else { - // Handle unexpected errors + // Handle non-Axios errors setNotification({ type: "error", description: "An unexpected error occurred", }); - retryUploadFile = false; } } } @@ -156,6 +167,8 @@ const PipelineUpload = ({ } }; + console.log("Notification", notification); + return (
- @@ -294,18 +263,22 @@ const Store = () => { isOpen={configureStore} variant="small" aria-label="Configure a store" - onClose={() => { - setConfigureStore(!configureStore); - }} + onClose={() => setConfigureStore(false)} > { - setConfigureStoreValue(value); - }} + id="temp_url" + value={tempURLValue} + defaultValue="http://rc-live.tch.harvard.edu:32222/api/v1/" + onChange={(_e, value) => setTempURLValue(value)} name="configureStore" + onKeyDown={(e) => { + if (e.key === "Enter") { + e.preventDefault(); + handleStoreURLConfiguration(tempURLValue); + } + }} /> @@ -314,26 +287,10 @@ const Store = () => { - - @@ -343,37 +300,18 @@ const Store = () => {
- You are currently viewing plugins fetched from{" "} - {configureStoreValue || import.meta.env.VITE_CHRIS_STORE_URL} + You are currently viewing plugins fetched from {configureURL}
- + { -

+

{plugin.data.name}

@@ -421,32 +354,20 @@ const Store = () => {
{plugin.data.title}
-
{plugin.data.authors}
-

+

{format( new Date(plugin.data.modification_date), "do MMMM, yyyy", )}

-

+

Version:{" "} { - setVersion({ - [plugin.data.id]: selectedVersion, - }); + setVersion({ [plugin.data.id]: selectedVersion }); }} currentVersion={ version[plugin.data.id] || plugin.data.version @@ -454,7 +375,6 @@ const Store = () => { plugins={plugin.data.plugins} />

- {isInstalled ? (
{ }} > - {" "}
Installed
@@ -481,15 +398,13 @@ const Store = () => { installingPlugin?.data.id === plugin.data.id && handleInstallMutation.isPending && } - style={{ - marginTop: "1em", - }} + style={{ marginTop: "1em" }} onClick={() => { setInstallingPlugin(plugin); if (isStaff) { handleSave(plugin); } else { - setEnterAdminCred(!enterAdminCred); + setEnterAdminCred(true); } }} > From bc7635718e24fed078f0510ba7d77cbbeaf73ec3 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Mon, 30 Sep 2024 18:34:51 -0400 Subject: [PATCH 267/337] feat: Update the Store --- .../PipelinesCopy/PipelineUpload.tsx | 46 ++- src/components/PipelinesCopy/context.tsx | 2 +- src/components/PipelinesCopy/index.tsx | 2 +- src/components/PipelinesCopy/utils.ts | 13 +- src/components/Store/index.tsx | 373 +++++++++++------- 5 files changed, 283 insertions(+), 153 deletions(-) diff --git a/src/components/PipelinesCopy/PipelineUpload.tsx b/src/components/PipelinesCopy/PipelineUpload.tsx index 3854fe724..71cf47de0 100644 --- a/src/components/PipelinesCopy/PipelineUpload.tsx +++ b/src/components/PipelinesCopy/PipelineUpload.tsx @@ -1,18 +1,18 @@ import Client from "@fnndsc/chrisapi"; import { Button } from "@patternfly/react-core"; -import { Alert } from "../Antd"; import axios from "axios"; import { isEmpty } from "lodash"; import { useRef, useState } from "react"; +import { Cookies } from "react-cookie"; import ChrisAPIClient from "../../api/chrisapiclient"; +import { Alert } from "../Antd"; import { fetchPluginMetasFromStore, handleInstallPlugin, - uploadPipelineSourceFile, - extractPluginInfo, -} from "./utils"; -import { Cookies } from "react-cookie"; - +} from "../PipelinesCopy/utils"; +import { uploadPipelineSourceFile } from "./utils"; +import { extractPluginInfo } from "./utils"; +import { useAppSelector } from "../../store/hooks"; interface Notification { type: "warning" | "success" | "info" | "error" | undefined; description: string; @@ -23,6 +23,7 @@ const PipelineUpload = ({ }: { fetchPipelinesAgain: () => void; }) => { + const isStaff = useAppSelector((state) => state.user.isStaff); const cookies = new Cookies(); const fileInput = useRef(null); const [notification, setNotification] = useState({ @@ -57,12 +58,37 @@ const PipelineUpload = ({ version, ); - // This feature is only available to logged-in users with a valid token - // If you have a token, install the plugin by making a request to the admin URL + // Read values from cookies + const admin_username = cookies.get("admin_username"); + const admin_password = cookies.get("admin_password"); + const compute_resource = cookies.get("compute_resource") || "host"; // Default to 'host' if not set + + // This feature is available to logged-in users or with admin credentials const client = ChrisAPIClient.getClient(); - const nonAdminCredentials = `Token ${client.auth.token}`; + + let authorization: string; + + if (isStaff) { + // Use the token if the user is logged in + authorization = `Token ${client.auth.token}`; + } else if (admin_username && admin_password) { + // Use admin credentials if available + const adminCredentials = btoa( + `${admin_username.trim()}:${admin_password.trim()}`, + ); + authorization = `Basic ${adminCredentials}`; + } else { + throw new Error( + "Please log in or provide admin credentials to install the plugin.", + ); + } + try { - await handleInstallPlugin(nonAdminCredentials, selectedPlugin); + await handleInstallPlugin( + authorization, + selectedPlugin, + compute_resource, + ); } catch (e) { // biome-ignore lint/complexity/noUselessCatch: throw e; diff --git a/src/components/PipelinesCopy/context.tsx b/src/components/PipelinesCopy/context.tsx index 825bb1b3e..60acef2c0 100644 --- a/src/components/PipelinesCopy/context.tsx +++ b/src/components/PipelinesCopy/context.tsx @@ -1,4 +1,4 @@ -import { +import type { ComputeResource, Pipeline, PipelinePipingDefaultParameterList, diff --git a/src/components/PipelinesCopy/index.tsx b/src/components/PipelinesCopy/index.tsx index 5fc0c6338..902da0943 100644 --- a/src/components/PipelinesCopy/index.tsx +++ b/src/components/PipelinesCopy/index.tsx @@ -221,7 +221,7 @@ const PipelinesCopy = () => { />
- {isStaff && } + {} {isError && ( {error.message}} /> diff --git a/src/components/PipelinesCopy/utils.ts b/src/components/PipelinesCopy/utils.ts index 9907e2fc6..b5b1e78cb 100644 --- a/src/components/PipelinesCopy/utils.ts +++ b/src/components/PipelinesCopy/utils.ts @@ -90,6 +90,7 @@ export const uploadPipelineSourceFile = async (client: Client, file: File) => { export const handleInstallPlugin = async ( adminCred: string, pluginToInstall: Plugin, + computeResource: string, ) => { const adminURL = import.meta.env.VITE_CHRIS_UI_URL.replace( "/api/v1/", @@ -99,7 +100,7 @@ export const handleInstallPlugin = async ( throw new Error("Please provide a link to your chris-admin url"); const pluginData = { - compute_names: "host", + compute_names: computeResource, name: pluginToInstall.data.name, version: pluginToInstall.data.version, plugin_store_url: pluginToInstall.url, @@ -115,22 +116,22 @@ export const handleInstallPlugin = async ( const data = await response.data; return data; } catch (e) { - console.log("Error", e); if (axios.isAxiosError(e) && e.response?.data) { const message = e.response.data; - // Log the entire error for more detailed context - console.error("Full error response:", message); - + if (message.detail) { + // Handle case { detail: "Invalid Username/Password" } + throw new Error(message.detail); + } // Check if it's an object with errors if (typeof message === "object") { const firstErrorKey = Object.keys(message)[0]; // Get the first error key const firstErrorMessage = message[firstErrorKey][0]; // Get the first error message throw new Error(`${firstErrorMessage}`); } - } else { throw new Error("An unexpected error occurred"); } + throw new Error("An unexpected error occurred"); } }; diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index eb07fcd38..db8f7e80f 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -1,4 +1,8 @@ -import Client, { type Plugin } from "@fnndsc/chrisapi"; +import Client, { + type ComputeResource, + type ComputeResourceList, + type Plugin, +} from "@fnndsc/chrisapi"; import { ActionGroup, Badge, @@ -28,8 +32,7 @@ import { } from "@patternfly/react-core"; import { useMutation, useQuery, useQueryClient } from "@tanstack/react-query"; import { format } from "date-fns"; -import { isEmpty } from "lodash"; -import { type Ref, useEffect, useState } from "react"; +import { type Ref, useEffect, useState, useCallback, useMemo } from "react"; import { Cookies, useCookies } from "react-cookie"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useAppSelector } from "../../store/hooks"; @@ -47,6 +50,7 @@ import WrapperConnect from "../Wrapper"; const Store: React.FC = () => { const isStaff = useAppSelector((state) => state.user.isStaff); + const isLoggedIn = useAppSelector((state) => state.user.isLoggedIn); const queryClient = useQueryClient(); const [_cookie, setCookie] = useCookies(); const [api, contextHolder] = notification.useNotification(); @@ -54,52 +58,124 @@ const Store: React.FC = () => { const [installingPlugin, setInstallingPlugin] = useState< { data: any } | undefined >(undefined); - const [enterAdminCred, setEnterAdminCred] = useState(false); - const [username, setUsername] = useState(""); - const [password, setPassword] = useState(""); + const [isConfigModalOpen, setIsConfigModalOpen] = useState(false); const [search, setSearch] = useState(""); const [tempURLValue, setTempURLValue] = useState(""); const [configureURL, setConfigureURL] = useState(""); - const [configureStore, setConfigureStore] = useState(false); + const [computeResourceOptions, setComputeResourceOptions] = useState< + string[] + >([]); + const [dropdown, setDropdown] = useState(false); const defaultStoreURL = import.meta.env.VITE_CHRIS_STORE_URL; + const localCubeURL = import.meta.env.VITE_CHRIS_UI_URL; const cookies = new Cookies(); const cookie_username = cookies.get("admin_username"); const cookie_password = cookies.get("admin_password"); const configure_url = cookies.get("configure_url"); + const compute_resource = cookies.get("compute_resource"); + + // Initialize username and password with default values + const [username, setUsername] = useState(() => { + if (cookie_username) return cookie_username; + if (isStaff) return "chris"; + return ""; + }); + + const [password, setPassword] = useState(() => { + if (cookie_password) return cookie_password; + if (isStaff) return "chris1234"; + return ""; + }); + + // Initialize computeResource from cookie or default to 'host' + const [computeResource, setComputeResource] = useState(() => { + return compute_resource || "host"; + }); + + // Fetch compute resources on load + useEffect(() => { + async function fetchComputeResources() { + if (!isLoggedIn) { + // User is not logged in, do not fetch compute resources + setComputeResourceOptions([]); + // Set computeResource from cookie if available + if (compute_resource) { + setComputeResource(compute_resource); + } + return; + } + + const client = ChrisAPIClient.getClient(); + try { + const response: ComputeResourceList = + await client.getComputeResources(); + const items = response.getItems() as ComputeResource[]; + const availableResources: string[] = items.map( + (resource: any) => resource.data.name, + ); + + if (availableResources.length === 0) { + // No compute resources available, set default to 'host' + setComputeResourceOptions([]); + setComputeResource("host"); + } else { + setComputeResourceOptions(availableResources); + // Set the default compute resource + if ( + compute_resource && + availableResources.includes(compute_resource) + ) { + setComputeResource(compute_resource); + } else { + setComputeResource(availableResources[0]); // Set the first compute resource as default + } + } + } catch (error: any) { + // Failed to fetch compute resources, set default to 'host' + setComputeResourceOptions([]); + setComputeResource("host"); + } + } + + fetchComputeResources(); + }, [api, compute_resource, isLoggedIn]); useEffect(() => { document.title = "Store Catalog"; - setUsername(cookie_username || ""); - setPassword(cookie_password || ""); + + setTempURLValue(configure_url || defaultStoreURL); setConfigureURL(configure_url || defaultStoreURL); - }, [cookie_username, cookie_password, configure_url, defaultStoreURL]); + }, [isStaff, configure_url, defaultStoreURL, isLoggedIn]); - const fetchPlugins = async (search: string) => { - const client = new Client(configureURL); - try { - const params = { - limit: 20, - offset: 0, - name: search.trim().toLowerCase(), - }; - const pluginMetas = await fetchPluginMetas(client, params); - - const newPluginPayload = await Promise.all( - pluginMetas.map(async (plugin) => { - const pluginItems = await fetchPluginForMeta(plugin); - const version = pluginItems?.[0]?.data.version || ""; - return { data: { ...plugin.data, version, plugins: pluginItems } }; - }), - ); - return { pluginMetaList: newPluginPayload, client }; - } catch (error) { - // biome-ignore lint/complexity/noUselessCatch: - throw error; - } - }; + const fetchPlugins = useCallback( + async (search: string) => { + const client = new Client(configureURL); + try { + const params = { + limit: 20, + offset: 0, + name: search.trim().toLowerCase(), + }; + const pluginMetas = await fetchPluginMetas(client, params); + + const newPluginPayload = await Promise.all( + pluginMetas.map(async (plugin) => { + const pluginItems = await fetchPluginForMeta(plugin); + const version = pluginItems?.[0]?.data.version || ""; + return { data: { ...plugin.data, version, plugins: pluginItems } }; + }), + ); + return { pluginMetaList: newPluginPayload, client }; + } catch (error) { + // biome-ignore lint/complexity/noUselessCatch: + throw error; + } + }, + [configureURL], + ); - const fetchExistingPlugins = async () => { + const fetchExistingPlugins = useCallback(async () => { const existingClient = ChrisAPIClient.getClient(); const plugins = await fetchPluginMetas(existingClient); @@ -116,16 +192,13 @@ const Store: React.FC = () => { }), ); } - }; + }, []); const handleInstall = async (selectedPlugin: Plugin) => { - const adminURL = import.meta.env.VITE_CHRIS_UI_URL.replace( - "/api/v1/", - "/chris-admin/api/v1/", - ); + const adminURL = localCubeURL.replace("/api/v1/", "/chris-admin/api/v1/"); + if (!adminURL) throw new Error("Please provide a link to your chris-admin url"); - const client = ChrisAPIClient.getClient(); const adminCredentials = btoa(`${username.trim()}:${password.trim()}`); const nonAdminCredentials = `Token ${client.auth.token}`; @@ -134,9 +207,11 @@ const Store: React.FC = () => { : nonAdminCredentials; try { - const data = await handleInstallPlugin(authorization, selectedPlugin); - setCookie("admin_username", username, { path: "/", maxAge: 86400 }); - setCookie("admin_password", password, { path: "/", maxAge: 86400 }); + const data = await handleInstallPlugin( + authorization, + selectedPlugin, + computeResource, + ); return data; } catch (error) { // biome-ignore lint/complexity/noUselessCatch: @@ -146,11 +221,17 @@ const Store: React.FC = () => { const handleInstallMutation = useMutation({ mutationFn: (selectedPlugin: Plugin) => handleInstall(selectedPlugin), - onSettled: (_data, error) => { - if (!isEmpty(error)) { - setInstallingPlugin(undefined); - setEnterAdminCred(false); - } + onSuccess: (_data) => { + queryClient.invalidateQueries({ queryKey: ["existingStorePlugins"] }); + api.success({ message: "Plugin Successfully installed..." }); + setInstallingPlugin(undefined); + }, + onError: (error: any) => { + api.error({ + message: "Failed to Install the plugin", + description: error.message, + }); + setInstallingPlugin(undefined); }, }); @@ -175,49 +256,51 @@ const Store: React.FC = () => { if (selectedPlugin) handleInstallMutation.mutate(selectedPlugin); }; - useEffect(() => { - if (handleInstallMutation.isSuccess) { - queryClient.invalidateQueries({ queryKey: ["existingStorePlugins"] }); - api.success({ message: "Plugin Successfully installed..." }); - } + const handleConfigSave = (e: React.FormEvent) => { + e.preventDefault(); - if (handleInstallMutation.isError) { - api.error({ - message: "Failed to Install the plugin", - description: handleInstallMutation.error.message, - }); - } - }, [ - handleInstallMutation.isSuccess, - handleInstallMutation.isError, - api, - queryClient, - ]); - - const TitleComponent = ( - - ); + // Save to cookies + setCookie("admin_username", username, { path: "/", maxAge: 86400 }); + setCookie("admin_password", password, { path: "/", maxAge: 86400 }); + setCookie("configure_url", tempURLValue, { path: "/", maxAge: 86400 }); + setCookie("compute_resource", computeResource, { + path: "/", + maxAge: 86400, + }); + + // Update the configureURL + setConfigureURL(tempURLValue); - const handleStoreURLConfiguration = (tempURL: string) => { - setConfigureURL(tempURL); - setCookie("configure_url", tempURL, { path: "/" }); - setConfigureStore(false); + // Close the modal + setIsConfigModalOpen(false); + + // If there is a plugin pending installation, proceed to install + if (installingPlugin) { + handleSave(); + } }; + const TitleComponent = useMemo( + () => ( + + ), + [], + ); + return ( {contextHolder} setEnterAdminCred(false)} - aria-label="Enter admin credentials" + isOpen={isConfigModalOpen} + onClose={() => setIsConfigModalOpen(false)} + aria-label="Configure Store" > - - + + { onChange={(_event, value: string) => setUsername(value)} /> - + setPassword(value)} - onKeyDown={(e) => e.key === "Enter" && handleSave()} /> - - - - - {handleInstallMutation.isError && ( - - )} - - - - setConfigureStore(false)} - > -
- + setTempURLValue(value)} - name="configureStore" - onKeyDown={(e) => { - if (e.key === "Enter") { - e.preventDefault(); - handleStoreURLConfiguration(tempURLValue); - } - }} + onChange={(_event, value: string) => setTempURLValue(value)} + placeholder="http://rc-live.tch.harvard.edu:32222/api/v1/" /> @@ -286,11 +333,56 @@ const Store: React.FC = () => { Example: http://rc-live.tch.harvard.edu:32222/api/v1/ + + {computeResourceOptions.length > 0 ? ( + + ) : ( + setComputeResource(value)} + /> + )} + - - @@ -305,13 +397,13 @@ const Store: React.FC = () => {
- + { {isLoading && } - {isError && } + {isError && } {data && ( @@ -367,7 +459,10 @@ const Store: React.FC = () => { Version:{" "} { - setVersion({ [plugin.data.id]: selectedVersion }); + setVersion({ + ...version, + [plugin.data.id]: selectedVersion, + }); }} currentVersion={ version[plugin.data.id] || plugin.data.version @@ -394,19 +489,27 @@ const Store: React.FC = () => { ) : ( From 630a9c88d3d67b5ae90757f549288cff4ef18162 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 2 Oct 2024 13:31:54 -0400 Subject: [PATCH 268/337] feat: Update biome.json to show react-hooks/exhaustive-deps --- biome.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/biome.json b/biome.json index 667c21416..53d6a1572 100644 --- a/biome.json +++ b/biome.json @@ -30,7 +30,7 @@ "noForEach": "off" }, "correctness": { - "useExhaustiveDependencies": "off" + "useExhaustiveDependencies": "warn" }, "suspicious": { "noExplicitAny": "off" From c2db78eba380752697ba8d9dd8ee71bf94ca703d Mon Sep 17 00:00:00 2001 From: Jennings Zhang Date: Wed, 2 Oct 2024 14:21:22 -0400 Subject: [PATCH 269/337] Update cube:6.3.0-beta.2 See https://github.com/FNNDSC/ChRIS_ultron_backEnd/releases/tag/v6.3.0-beta.2 --- testing/miniChRIS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/testing/miniChRIS b/testing/miniChRIS index a70318e5c..9b4c5dfa5 160000 --- a/testing/miniChRIS +++ b/testing/miniChRIS @@ -1 +1 @@ -Subproject commit a70318e5c6c6ce3d5e9bba82302ba67d490bd0f8 +Subproject commit 9b4c5dfa5f0b4278b1384bbf6513a9178bab3218 From 436d87e372208257c5ebb923adee80a8edc2fb66 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 2 Oct 2024 14:47:31 -0400 Subject: [PATCH 270/337] feat: Add a sticky header to the library page --- src/components/NewLibrary/index.tsx | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index 74d27ab4c..edcf35802 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -185,7 +185,12 @@ const NewLibrary = () => { return ( {contextHolder} - + { /> - + {isFetching && } {isError && } {/* Render based on currentLayout */} From 74c905b0aa01b27a2790039a56e91303909ca562 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Wed, 2 Oct 2024 17:15:12 -0400 Subject: [PATCH 271/337] feat: Replace Patternfly Drawers with React Resizable Panels --- package.json | 1 + pnpm-lock.yaml | 14 + .../FeedOutputBrowser/FileBrowser.tsx | 334 ++++++++++-------- src/components/Feeds/FeedView.tsx | 108 +++--- src/components/Feeds/Feeds.css | 54 +++ .../components/BreadcrumbContainer.tsx | 4 +- src/components/NewLibrary/index.tsx | 4 +- 7 files changed, 301 insertions(+), 218 deletions(-) diff --git a/package.json b/package.json index 640a34055..16d54268b 100644 --- a/package.json +++ b/package.json @@ -87,6 +87,7 @@ "react-json-view": "^1.21.3", "react-lazylog": "^4.5.3", "react-redux": "^9.1.2", + "react-resizable-panels": "^2.1.4", "react-router": "^6.26.2", "react-router-dom": "^6.26.2", "redux-saga": "^1.3.0", diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index db6cd26d5..83020e3f8 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -158,6 +158,9 @@ importers: react-redux: specifier: ^9.1.2 version: 9.1.2(@types/react@18.3.4)(react@18.3.1)(redux@5.0.1) + react-resizable-panels: + specifier: ^2.1.4 + version: 2.1.4(react-dom@18.3.1(react@18.3.1))(react@18.3.1) react-router: specifier: ^6.26.2 version: 6.26.2(react@18.3.1) @@ -3767,6 +3770,12 @@ packages: redux: optional: true + react-resizable-panels@2.1.4: + resolution: {integrity: sha512-kzue8lsoSBdyyd2IfXLQMMhNujOxRoGVus+63K95fQqleGxTfvgYLTzbwYMOODeAHqnkjb3WV/Ks7f5+gDYZuQ==} + peerDependencies: + react: ^16.14.0 || ^17.0.0 || ^18.0.0 + react-dom: ^16.14.0 || ^17.0.0 || ^18.0.0 + react-router-dom@6.26.2: resolution: {integrity: sha512-z7YkaEW0Dy35T3/QKPYB1LjMK2R1fxnHO8kWpUMTBdfVzZrWOiY9a7CtN8HqdWtDUWd5FY6Dl8HFsqVwH4uOtQ==} engines: {node: '>=14.0.0'} @@ -8654,6 +8663,11 @@ snapshots: '@types/react': 18.3.4 redux: 5.0.1 + react-resizable-panels@2.1.4(react-dom@18.3.1(react@18.3.1))(react@18.3.1): + dependencies: + react: 18.3.1 + react-dom: 18.3.1(react@18.3.1) + react-router-dom@6.26.2(react-dom@18.3.1(react@18.3.1))(react@18.3.1): dependencies: '@remix-run/router': 1.19.2 diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 3baaa0366..b9cf00797 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -7,11 +7,6 @@ import { Breadcrumb, BreadcrumbItem, Button, - Drawer, - DrawerContent, - DrawerContentBody, - DrawerPanelBody, - DrawerPanelContent, Grid, Tooltip, } from "@patternfly/react-core"; @@ -43,6 +38,8 @@ import { OperationContext } from "../NewLibrary/context"; import FileDetailView from "../Preview/FileDetailView"; import XtkViewer from "../XtkViewer/XtkViewer"; import type { FileBrowserProps } from "./types"; +import { PanelGroup, Panel, PanelResizeHandle } from "react-resizable-panels"; +import backgroundColors from "@cornerstonejs/core/dist/types/constants/backgroundColors"; const previewAnimation = [{ opacity: "0.0" }, { opacity: "1.0" }]; @@ -100,7 +97,7 @@ const FileBrowser = (props: FileBrowserProps) => { description: downloadError.message, }); } - }, [isSuccess, isError, downloadError]); + }, [api, isSuccess, isError, downloadError, handleDownloadMutation]); const generateBreadcrumb = (value: string, index: number) => { const onClick = () => { @@ -148,40 +145,6 @@ const FileBrowser = (props: FileBrowserProps) => { ?.animate(previewAnimation, previewAnimationTiming); }; - const previewPanel = ( - - { - handleMaximize("preview", dispatch); - }} - handleMinimize={() => { - handleMinimize("preview", dispatch); - }} - maximized={drawerState.preview.maximized} - /> - - {drawerState.preview.currentlyActive === "preview" && selectedFile && ( - - )} - {drawerState.preview.currentlyActive === "xtk" && } - - - ); - const origin = { type: OperationContext.FILEBROWSER, additionalKeys: [additionalKey], @@ -190,11 +153,14 @@ const FileBrowser = (props: FileBrowserProps) => { return ( {contextHolder} - - + {/* Left Panel: File Browser */} + + {/* Drawer Action Button for Files */} { @@ -206,81 +172,73 @@ const FileBrowser = (props: FileBrowserProps) => { maximized={drawerState.files.maximized} /> {drawerState.files.open && ( - - -
-
- - {breadcrumb.map(generateBreadcrumb)} -
- -
- {additionalKey !== currentPath && - selected.data.plugin_type === "fs" && ( - Go back to the base directory} - > - - - )} + + + )} +
- - - - - - - - - - - {filesMap?.map((resource: FileBrowserFolderFile, index) => { - return ( - { - return; - }} - handleFileClick={() => { - toggleAnimation(); - dispatch( - setSelectedFile(resource as FileBrowserFolderFile), - ); - !drawerState.preview.open && - dispatch(setFilePreviewPanel()); - }} - origin={origin} - /> - ); - })} - {linkFilesMap?.map( - (resource: FileBrowserFolderLinkFile, index) => { + {/* Scrollable Content */} +
+
- {columnNames.name}{columnNames.created}{columnNames.creator}{columnNames.size}
+ + + + + + + + + + {filesMap?.map((resource: FileBrowserFolderFile, index) => { return ( - { return; }} handleFileClick={() => { - handleFileClick(resource.data.path); + toggleAnimation(); + dispatch( + setSelectedFile( + resource as FileBrowserFolderFile, + ), + ); + !drawerState.preview.open && + dispatch(setFilePreviewPanel()); }} origin={origin} /> ); - }, - )} + })} + {linkFilesMap?.map( + (resource: FileBrowserFolderLinkFile, index) => { + return ( + { + return; + }} + handleFileClick={() => { + handleFileClick(resource.data.path); + }} + origin={origin} + /> + ); + }, + )} - {subFoldersMap?.map((resource: FileBrowserFolder, index) => { - return ( - - handleFileClick(resource.data.path) - } - handleFileClick={() => { - return; - }} - origin={origin} - /> - ); - })} - -
+ {columnNames.name}{columnNames.created}{columnNames.creator}{columnNames.size}
- {fetchMore && !isLoading && ( - - )} -
- + {subFoldersMap?.map( + (resource: FileBrowserFolder, index) => { + return ( + + handleFileClick(resource.data.path) + } + handleFileClick={() => { + return; + }} + origin={origin} + /> + ); + }, + )} + + + {/* Load More Button */} + {fetchMore && !isLoading && ( + + )} + {/* Observer Target */} +
+
+ )} - - + + + {/* Resize Handle */} + {drawerState.preview.open && ( + + )} + + {/* Right Panel: Preview Panel */} + {drawerState.preview.open && ( + + {/* Drawer Action Button for Preview */} + { + handleMaximize("preview", dispatch); + }} + handleMinimize={() => { + handleMinimize("preview", dispatch); + }} + maximized={drawerState.preview.maximized} + /> +
+ {drawerState.preview.currentlyActive === "preview" && + selectedFile && ( + + )} + {drawerState.preview.currentlyActive === "xtk" && } +
+ + )} + ); }; diff --git a/src/components/Feeds/FeedView.tsx b/src/components/Feeds/FeedView.tsx index 942f94985..d2ee3cc63 100644 --- a/src/components/Feeds/FeedView.tsx +++ b/src/components/Feeds/FeedView.tsx @@ -1,11 +1,6 @@ import type { Feed, PluginInstance } from "@fnndsc/chrisapi"; -import { - Drawer, - DrawerContent, - DrawerContentBody, - DrawerPanelContent, - Tooltip, -} from "@patternfly/react-core"; +import { Tooltip } from "@patternfly/react-core"; +import { PanelGroup, Panel, PanelResizeHandle } from "react-resizable-panels"; import { Typography } from "antd"; import React, { useCallback, useEffect, useRef } from "react"; import { useLocation, useNavigate, useParams } from "react-router"; @@ -36,6 +31,8 @@ import { DrawerActionButton } from "./DrawerUtils"; import { useFetchFeed } from "./useFetchFeed"; import { useSearchQueryParams } from "./usePaginate"; import { handleMaximize, handleMinimize } from "./utilties"; +import "./Feeds.css"; // Import your CSS file + const { Title } = Typography; const FeedView: React.FC = () => { @@ -58,6 +55,7 @@ const FeedView: React.FC = () => { selectedPlugin, }; const { feed, contextHolder } = useFetchFeed(id, type, isLoggedIn); + useEffect(() => { if (!type || (type === "private" && !isLoggedIn)) { const redirectTo = encodeURIComponent( @@ -117,33 +115,6 @@ const FeedView: React.FC = () => { [drawerState, dispatch], ); - const feedTreeAndGraph = ( - - - {handleDrawerAction("node")} -
- -
- - } - > - {handleDrawerAction("graph")} - - {!currentLayout ? ( - - ) : ( - - )} - - - - ); - const TitleComponent = ( <CodeBranchIcon style={{ marginRight: "0.25em" }} /> @@ -156,31 +127,50 @@ const FeedView: React.FC = () => { return ( <WrapperConnect titleComponent={TitleComponent}> {contextHolder} - <Drawer - isInline - position="bottom" - isExpanded={drawerState.preview.open || drawerState.files.open} - > - <DrawerContent - panelContent={ - <DrawerPanelContent - defaultSize={ - !drawerState.graph.open && !drawerState.node.open - ? "100vh" - : "46vh" - } - isResizable - > - <FeedOutputBrowser - explore={true} - handlePluginSelect={onNodeBrowserClick} - /> - </DrawerPanelContent> - } - > - {feedTreeAndGraph} - </DrawerContent> - </Drawer> + <PanelGroup direction="vertical"> + {/* Top Panels: Graph and Node Details */} + <Panel className="custom-panel" defaultSize={54} minSize={20}> + <PanelGroup direction="horizontal"> + {/* Left Panel: Graph */} + <Panel defaultSize={drawerState.node.open ? 53 : 100} minSize={20}> + {handleDrawerAction("graph")} + {!currentLayout ? ( + <ParentComponent onNodeClick={onNodeClick} /> + ) : ( + <FeedGraph onNodeClick={onNodeClick} /> + )} + </Panel> + + {/* Horizontal Resize Handle */} + {drawerState.node.open && ( + <PanelResizeHandle className="ResizeHandle" /> + )} + + {/* Right Panel: Node Details */} + {drawerState.node.open && ( + <Panel className="custom-panel" defaultSize={47} minSize={20}> + {handleDrawerAction("node")} + <div className="node-block"> + <NodeDetails /> + </div> + </Panel> + )} + </PanelGroup> + </Panel> + + {/* Vertical Resize Handle */} + {(drawerState.preview.open || drawerState.files.open) && ( + <PanelResizeHandle className="ResizeHandleVertical" /> + )} + + {/* Bottom Panel: Feed Output Browser */} + <Panel className="custom-panel" defaultSize={44} minSize={20}> + <FeedOutputBrowser + explore={true} + handlePluginSelect={onNodeBrowserClick} + /> + </Panel> + </PanelGroup> </WrapperConnect> ); }; diff --git a/src/components/Feeds/Feeds.css b/src/components/Feeds/Feeds.css index 5cdd83cf5..3ec35f3ff 100644 --- a/src/components/Feeds/Feeds.css +++ b/src/components/Feeds/Feeds.css @@ -41,3 +41,57 @@ > * { vertical-align: middle !important; } + + + +.custom-panel { + background-color: var(--pf-v5-c-page__main-section--BackgroundColor); + border-right: 1px solid var(--pf-global--BorderColor--dark); +} + + + +/* Common styles for both handles */ +.ResizeHandle, +.ResizeHandleVertical, +.ResizeHandleCollapsed { + background-color: gray; /* Default background color */ + transition: background-color 250ms linear; +} + +/* Horizontal resize handle (between side panels) */ +.ResizeHandle { + width: 0.25rem; + height: 100%; + cursor: col-resize; +} + +/* Vertical resize handle (between top and bottom panels) */ +.ResizeHandleVertical { + height: 0.25rem; + width: 100%; + cursor: row-resize; +} + +/* Hover and active states for both handles */ +.ResizeHandle:hover, +.ResizeHandle[data-resize-handle-active], +.ResizeHandleVertical:hover, +.ResizeHandleVertical[data-resize-handle-active], +.ResizeHandleCollapsed:hover, +.ResizeHandleCollapsed[data-resize-handle-active] { + background-color: var(--pf-global--active-color--400); /* PatternFly blue */ +} + +/* Adjust for touch devices */ +@media (pointer: coarse) { + .ResizeHandle { + width: 1rem; + } + .ResizeHandleVertical { + height: 1rem; + } +} + + + diff --git a/src/components/NewLibrary/components/BreadcrumbContainer.tsx b/src/components/NewLibrary/components/BreadcrumbContainer.tsx index 4ef4d8e25..9c469c595 100644 --- a/src/components/NewLibrary/components/BreadcrumbContainer.tsx +++ b/src/components/NewLibrary/components/BreadcrumbContainer.tsx @@ -34,9 +34,7 @@ const BreadcrumbContainer = ({ return ( <> - <Toolbar - style={{ paddingTop: "0", paddingLeft: "0", paddingBottom: "0" }} - > + <Toolbar> <ToolbarContent> {showHomeButton && ( <ToolbarItem> diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index edcf35802..e1761e65a 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -189,7 +189,7 @@ const NewLibrary = () => { stickyOnBreakpoint={{ default: "top", }} - style={{ padding: "0.25em" }} + style={{ padding: "0" }} > <Operations origin={{ @@ -208,7 +208,7 @@ const NewLibrary = () => { /> </PageSection> - <PageSection style={{ padding: "0.25em" }}> + <PageSection style={{ padding: "0" }}> {isFetching && <SpinContainer title="Fetching Resources..." />} {isError && <Alert type="error" description={error.message} />} {/* Render based on currentLayout */} From 815dc6e41cbf5cdb5076f5d124abc35425f63038 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 3 Oct 2024 10:54:55 -0400 Subject: [PATCH 272/337] feat: Fix the bug in minimizing and maximizing panels with react-resizable-panels --- .../FeedOutputBrowser/FileBrowser.tsx | 347 +++++++++--------- src/components/Feeds/FeedView.tsx | 101 +++-- src/components/Wrapper/Toolbar.tsx | 4 +- 3 files changed, 241 insertions(+), 211 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index b9cf00797..9a0789dba 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -153,186 +153,191 @@ const FileBrowser = (props: FileBrowserProps) => { return ( <Grid hasGutter className="file-browser"> {contextHolder} - <PanelGroup direction="horizontal"> + + <PanelGroup autoSaveId="conditional" direction="horizontal"> {/* Left Panel: File Browser */} - <Panel - className="custom-panel" - defaultSize={drawerState.preview.open ? 53 : 100} - minSize={20} - > - {/* Drawer Action Button for Files */} - <DrawerActionButton - content="Files" - handleMaximize={() => { - handleMaximize("files", dispatch); - }} - handleMinimize={() => { - handleMinimize("files", dispatch); - }} - maximized={drawerState.files.maximized} - /> - {drawerState.files.open && ( - <> - {/* Sticky Container */} - <div className="sticky-container"> - <Operations - customClassName={{ - toolbar: "remove-toolbar-padding", - }} - customStyle={{ - toolbar: { - backgroundColor: "inherit", - }, - }} - origin={origin} - computedPath={additionalKey} - folderList={pluginFilesPayload.folderList} - /> - <div className="file-browser__header"> - <div className="file-browser__header--breadcrumbContainer"> - <ClipboardCopyContainer path={additionalKey} /> - <Breadcrumb> - {breadcrumb.map(generateBreadcrumb)} - </Breadcrumb> - </div> - {/* Optional Back Button */} - <div> - {additionalKey !== currentPath && - selected.data.plugin_type === "fs" && ( - <Tooltip - content={<span>Go back to the base directory</span>} - > - <Button - onClick={() => handleFileClick(currentPath)} - variant="link" - icon={<HomeIcon />} + {drawerState.files.open && ( + <> + <Panel + className="custom-panel" + order={1} + id="4" + defaultSize={53} + minSize={20} + > + {/* Drawer Action Button for Files */} + <DrawerActionButton + content="Files" + handleMaximize={() => { + handleMaximize("files", dispatch); + }} + handleMinimize={() => { + handleMinimize("files", dispatch); + }} + maximized={drawerState.files.maximized} + /> + + <> + {/* Sticky Container */} + <div className="sticky-container"> + <Operations + customClassName={{ + toolbar: "remove-toolbar-padding", + }} + customStyle={{ + toolbar: { + backgroundColor: "inherit", + }, + }} + origin={origin} + computedPath={additionalKey} + folderList={pluginFilesPayload.folderList} + /> + <div className="file-browser__header"> + <div className="file-browser__header--breadcrumbContainer"> + <ClipboardCopyContainer path={additionalKey} /> + <Breadcrumb> + {breadcrumb.map(generateBreadcrumb)} + </Breadcrumb> + </div> + {/* Optional Back Button */} + <div> + {additionalKey !== currentPath && + selected.data.plugin_type === "fs" && ( + <Tooltip + content={<span>Go back to the base directory</span>} > - Back - </Button> - </Tooltip> - )} + <Button + onClick={() => handleFileClick(currentPath)} + variant="link" + icon={<HomeIcon />} + > + Back + </Button> + </Tooltip> + )} + </div> </div> </div> - </div> - {/* Scrollable Content */} - <div className="scrollable-content"> - <Table - style={{ - backgroundColor: "inherit", - }} - variant="compact" - > - <Thead aria-label="file-browser-table"> - <Tr> - <Th aria-label="file-selection-checkbox" /> - <Th aria-label="file-name">{columnNames.name}</Th> - <Th aria-label="file-creator">{columnNames.created}</Th> - <Th aria-label="file-owner">{columnNames.creator}</Th> - <Th aria-label="file-size">{columnNames.size}</Th> - </Tr> - </Thead> - <Tbody> - {filesMap?.map((resource: FileBrowserFolderFile, index) => { - return ( - <FileRow - rowIndex={index} - key={resource.data.fname} - resource={resource} - name={getFileName(resource)} - date={resource.data.creation_date} - owner={resource.data.owner_username} - size={resource.data.fsize} - computedPath={additionalKey} - handleFolderClick={() => { - return; - }} - handleFileClick={() => { - toggleAnimation(); - dispatch( - setSelectedFile( - resource as FileBrowserFolderFile, - ), - ); - !drawerState.preview.open && - dispatch(setFilePreviewPanel()); - }} - origin={origin} - /> - ); - })} - {linkFilesMap?.map( - (resource: FileBrowserFolderLinkFile, index) => { - return ( - <LinkRow - rowIndex={index} - key={resource.data.path} - resource={resource} - name={getLinkFileName(resource)} - date={resource.data.creation_date} - owner={resource.data.owner_username} - size={resource.data.fsize} - computedPath={additionalKey} - handleFolderClick={() => { - return; - }} - handleFileClick={() => { - handleFileClick(resource.data.path); - }} - origin={origin} - /> - ); - }, - )} - - {subFoldersMap?.map( - (resource: FileBrowserFolder, index) => { - return ( - <FolderRow - rowIndex={index} - key={resource.data.path} - resource={resource} - name={getFolderName(resource, additionalKey)} - date={resource.data.creation_date} - owner=" " - size={0} - computedPath={additionalKey} - handleFolderClick={() => - handleFileClick(resource.data.path) - } - handleFileClick={() => { - return; - }} - origin={origin} - /> - ); - }, - )} - </Tbody> - </Table> - {/* Load More Button */} - {fetchMore && !isLoading && ( - <Button onClick={handlePagination} variant="link"> - Load more data... - </Button> - )} - {/* Observer Target */} - <div - style={{ height: "1px", marginTop: "10px" }} - ref={observerTarget} - /> - </div> - </> - )} - </Panel> + {/* Scrollable Content */} + <div className="scrollable-content"> + <Table + style={{ + backgroundColor: "inherit", + }} + variant="compact" + > + <Thead aria-label="file-browser-table"> + <Tr> + <Th aria-label="file-selection-checkbox" /> + <Th aria-label="file-name">{columnNames.name}</Th> + <Th aria-label="file-creator">{columnNames.created}</Th> + <Th aria-label="file-owner">{columnNames.creator}</Th> + <Th aria-label="file-size">{columnNames.size}</Th> + </Tr> + </Thead> + <Tbody> + {filesMap?.map( + (resource: FileBrowserFolderFile, index) => { + return ( + <FileRow + rowIndex={index} + key={resource.data.fname} + resource={resource} + name={getFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={additionalKey} + handleFolderClick={() => { + return; + }} + handleFileClick={() => { + toggleAnimation(); + dispatch( + setSelectedFile( + resource as FileBrowserFolderFile, + ), + ); + !drawerState.preview.open && + dispatch(setFilePreviewPanel()); + }} + origin={origin} + /> + ); + }, + )} + {linkFilesMap?.map( + (resource: FileBrowserFolderLinkFile, index) => { + return ( + <LinkRow + rowIndex={index} + key={resource.data.path} + resource={resource} + name={getLinkFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={additionalKey} + handleFolderClick={() => { + return; + }} + handleFileClick={() => { + handleFileClick(resource.data.path); + }} + origin={origin} + /> + ); + }, + )} - {/* Resize Handle */} - {drawerState.preview.open && ( - <PanelResizeHandle className="ResizeHandle" /> + {subFoldersMap?.map( + (resource: FileBrowserFolder, index) => { + return ( + <FolderRow + rowIndex={index} + key={resource.data.path} + resource={resource} + name={getFolderName(resource, additionalKey)} + date={resource.data.creation_date} + owner=" " + size={0} + computedPath={additionalKey} + handleFolderClick={() => + handleFileClick(resource.data.path) + } + handleFileClick={() => { + return; + }} + origin={origin} + /> + ); + }, + )} + </Tbody> + </Table> + {/* Load More Button */} + {fetchMore && !isLoading && ( + <Button onClick={handlePagination} variant="link"> + Load more data... + </Button> + )} + {/* Observer Target */} + <div + style={{ height: "1px", marginTop: "10px" }} + ref={observerTarget} + /> + </div> + </> + </Panel> + {/* Resize Handle */} + <PanelResizeHandle className="ResizeHandle" /> + </> )} {/* Right Panel: Preview Panel */} {drawerState.preview.open && ( - <Panel defaultSize={47} minSize={20}> + <Panel order={2} id="5" defaultSize={47} minSize={20}> {/* Drawer Action Button for Preview */} <DrawerActionButton content="Preview" diff --git a/src/components/Feeds/FeedView.tsx b/src/components/Feeds/FeedView.tsx index d2ee3cc63..c8945dec4 100644 --- a/src/components/Feeds/FeedView.tsx +++ b/src/components/Feeds/FeedView.tsx @@ -127,49 +127,76 @@ const FeedView: React.FC = () => { return ( <WrapperConnect titleComponent={TitleComponent}> {contextHolder} - <PanelGroup direction="vertical"> + <PanelGroup autoSaveId="conditional" direction="vertical"> {/* Top Panels: Graph and Node Details */} - <Panel className="custom-panel" defaultSize={54} minSize={20}> - <PanelGroup direction="horizontal"> - {/* Left Panel: Graph */} - <Panel defaultSize={drawerState.node.open ? 53 : 100} minSize={20}> - {handleDrawerAction("graph")} - {!currentLayout ? ( - <ParentComponent onNodeClick={onNodeClick} /> - ) : ( - <FeedGraph onNodeClick={onNodeClick} /> - )} - </Panel> - - {/* Horizontal Resize Handle */} - {drawerState.node.open && ( - <PanelResizeHandle className="ResizeHandle" /> - )} + {(drawerState.graph.open || drawerState.node.open) && ( + <> + <Panel + className="custom-panel" + id="1" + order={1} + defaultSize={50} + minSize={20} + > + <PanelGroup autoSaveId="conditional" direction="horizontal"> + {/* Left Panel: Graph */} + {drawerState.graph.open && ( + <> + <Panel + className="custom-panel" + order={1} + defaultSize={53} + minSize={20} + > + {handleDrawerAction("graph")} + {!currentLayout ? ( + <ParentComponent onNodeClick={onNodeClick} /> + ) : ( + <FeedGraph onNodeClick={onNodeClick} /> + )} + </Panel> + <PanelResizeHandle className="ResizeHandle" /> + </> + )} - {/* Right Panel: Node Details */} - {drawerState.node.open && ( - <Panel className="custom-panel" defaultSize={47} minSize={20}> - {handleDrawerAction("node")} - <div className="node-block"> - <NodeDetails /> - </div> - </Panel> - )} - </PanelGroup> - </Panel> + {/* Right Panel: Node Details */} + {drawerState.node.open && ( + <Panel + className="custom-panel" + id="2" + order={2} + defaultSize={47} + minSize={20} + > + {handleDrawerAction("node")} + <div className="node-block"> + <NodeDetails /> + </div> + </Panel> + )} + </PanelGroup> + </Panel> + <PanelResizeHandle className="ResizeHandleVertical" /> + </> + )} {/* Vertical Resize Handle */} - {(drawerState.preview.open || drawerState.files.open) && ( - <PanelResizeHandle className="ResizeHandleVertical" /> - )} {/* Bottom Panel: Feed Output Browser */} - <Panel className="custom-panel" defaultSize={44} minSize={20}> - <FeedOutputBrowser - explore={true} - handlePluginSelect={onNodeBrowserClick} - /> - </Panel> + {(drawerState.files.open || drawerState.preview.open) && ( + <Panel + className="custom-panel" + id="3" + order={2} + defaultSize={50} + minSize={20} + > + <FeedOutputBrowser + explore={true} + handlePluginSelect={onNodeBrowserClick} + /> + </Panel> + )} </PanelGroup> </WrapperConnect> ); diff --git a/src/components/Wrapper/Toolbar.tsx b/src/components/Wrapper/Toolbar.tsx index 9c14dbf9d..9fdd8e347 100644 --- a/src/components/Wrapper/Toolbar.tsx +++ b/src/components/Wrapper/Toolbar.tsx @@ -31,8 +31,6 @@ const ToolbarComponent: React.FC<ToolbarComponentProps> = ( ) => { const { token, titleComponent } = props; const dispatch = useAppDispatch(); - const drawerState = useAppSelector((state) => state.drawers); - const fullScreen = drawerState?.preview.open && drawerState.preview.maximized; const navigate = useNavigate(); const location = useLocation(); const [_, _setCookie, removeCookie] = useCookies(); @@ -94,7 +92,7 @@ const ToolbarComponent: React.FC<ToolbarComponentProps> = ( <FlexItem>{titleComponent && titleComponent}</FlexItem> {/* Center */} <FlexItem flex={{ default: "flex_1" }}> - {props.showToolbar && !fullScreen && <FeedDetails />} + {props.showToolbar && <FeedDetails />} </FlexItem> {/* Right section */} From 793622367a159c1dbab0f1297ea82706635f58ca Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 3 Oct 2024 11:08:28 -0400 Subject: [PATCH 273/337] feat: Adjust panel height for dicom images --- .../FeedOutputBrowser/FileBrowser.tsx | 29 +++++++++---------- 1 file changed, 14 insertions(+), 15 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 9a0789dba..0fd8fb2ec 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -349,21 +349,20 @@ const FileBrowser = (props: FileBrowserProps) => { }} maximized={drawerState.preview.maximized} /> - <div className="file-browser__drawerbody"> - {drawerState.preview.currentlyActive === "preview" && - selectedFile && ( - <FileDetailView - gallery={true} - selectedFile={selectedFile} - preview="large" - list={pluginFilesPayload.filesMap} - fetchMore={fetchMore} - handlePagination={handlePagination} - filesLoading={isLoading} - /> - )} - {drawerState.preview.currentlyActive === "xtk" && <XtkViewer />} - </div> + + {drawerState.preview.currentlyActive === "preview" && + selectedFile && ( + <FileDetailView + gallery={true} + selectedFile={selectedFile} + preview="large" + list={pluginFilesPayload.filesMap} + fetchMore={fetchMore} + handlePagination={handlePagination} + filesLoading={isLoading} + /> + )} + {drawerState.preview.currentlyActive === "xtk" && <XtkViewer />} </Panel> )} </PanelGroup> From a7afdcea03eaae7c0b15da387ad35841236ee238 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 3 Oct 2024 12:32:36 -0400 Subject: [PATCH 274/337] feat: Sticky Headers and Responsive Tables --- .../FeedOutputBrowser/FeedOutputBrowser.css | 72 ------------------- .../FeedOutputBrowser/FileBrowser.tsx | 25 ++++--- .../NewLibrary/components/LibraryTable.tsx | 50 ++++++++----- .../NewLibrary/components/TruncatedText.tsx | 34 +++++++++ 4 files changed, 82 insertions(+), 99 deletions(-) create mode 100644 src/components/NewLibrary/components/TruncatedText.tsx diff --git a/src/components/FeedOutputBrowser/FeedOutputBrowser.css b/src/components/FeedOutputBrowser/FeedOutputBrowser.css index 84e1c51e6..deb011b2e 100644 --- a/src/components/FeedOutputBrowser/FeedOutputBrowser.css +++ b/src/components/FeedOutputBrowser/FeedOutputBrowser.css @@ -12,36 +12,10 @@ } } -.feed-output-browser__button { - cursor: pointer; -} - .file-browser { height: 100%; } -.file-browser__drawerbody { - overflow: scroll; -} - -.file-browser .carousel { - position: absolute; - bottom: 0; - right: 0; - z-index: 999; -} - -.file-browser__previewPanel .pf-v5-c-drawer__content, -.file-browser__previewPanel .pf-v5-c-drawer__panel, -.file-browser__previewPanel .pf-v5-c-drawer__panel-main { - overflow: hidden !important; -} - -.file-browser__table--fileName { - display: flex; - flex-direction: row; -} - .file-browser__header { display: flex; flex-direction: column; @@ -49,58 +23,12 @@ margin-right: 0.25em; } -.file-browser__header__info { - gap: 2rem; - display: flex; - justify-content: flex-end; -} - @media screen and (min-width: 1024px) { .file-browser__header { display: flex; } } -.file-browser .pf-c-breadcrumb { - cursor: pointer; - --pf-v5-c-breadcrumb__item--FontSize: var(--pf-global--FontSize--md); -} - -.file-browser__firstGrid { - overflow-y: scroll !important; - height: 100% !important; - max-width: 100%; - margin: 0; -} - -.file-browser__firstGrid tbody tr { - cursor: pointer; -} - -.file-browser__firstGrid svg { - margin-right: 0.25em; -} - -.file-browser .header-panel__buttons { - display: flex; - justify-content: space-between; -} - -.file-browser .preview-panel { - display: flex; - justify-content: space-between; -} - -.file-browser .preview-panel > div { - width: 100%; -} - -.file-browser .preview-panel > div > div:first-child { - display: flex; - flex-direction: row; - justify-content: space-between; -} - .iframe-container { height: 100%; } diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 0fd8fb2ec..4849e5260 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -12,6 +12,7 @@ import { } from "@patternfly/react-core"; import { Table, Tbody, Th, Thead, Tr } from "@patternfly/react-table"; import { useEffect } from "react"; +import { Panel, PanelGroup, PanelResizeHandle } from "react-resizable-panels"; import { setFilePreviewPanel } from "../../store/drawer/drawerSlice"; import { clearSelectedFile, @@ -38,8 +39,6 @@ import { OperationContext } from "../NewLibrary/context"; import FileDetailView from "../Preview/FileDetailView"; import XtkViewer from "../XtkViewer/XtkViewer"; import type { FileBrowserProps } from "./types"; -import { PanelGroup, Panel, PanelResizeHandle } from "react-resizable-panels"; -import backgroundColors from "@cornerstonejs/core/dist/types/constants/backgroundColors"; const previewAnimation = [{ opacity: "0.0" }, { opacity: "1.0" }]; @@ -153,7 +152,6 @@ const FileBrowser = (props: FileBrowserProps) => { return ( <Grid hasGutter className="file-browser"> {contextHolder} - <PanelGroup autoSaveId="conditional" direction="horizontal"> {/* Left Panel: File Browser */} {drawerState.files.open && ( @@ -164,6 +162,7 @@ const FileBrowser = (props: FileBrowserProps) => { id="4" defaultSize={53} minSize={20} + style={{ display: "flex", flexDirection: "column" }} > {/* Drawer Action Button for Files */} <DrawerActionButton @@ -220,20 +219,30 @@ const FileBrowser = (props: FileBrowserProps) => { </div> </div> {/* Scrollable Content */} - <div className="scrollable-content"> + + <div style={{ flex: 1, overflow: "auto" }}> <Table style={{ backgroundColor: "inherit", }} variant="compact" + isStickyHeader={true} > <Thead aria-label="file-browser-table"> <Tr> <Th aria-label="file-selection-checkbox" /> - <Th aria-label="file-name">{columnNames.name}</Th> - <Th aria-label="file-creator">{columnNames.created}</Th> - <Th aria-label="file-owner">{columnNames.creator}</Th> - <Th aria-label="file-size">{columnNames.size}</Th> + <Th aria-label="file-name" width={40}> + {columnNames.name} + </Th> + <Th aria-label="file-creator" width={20}> + {columnNames.created} + </Th> + <Th aria-label="file-owner" width={20}> + {columnNames.creator} + </Th> + <Th aria-label="file-size" width={20}> + {columnNames.size} + </Th> </Tr> </Thead> <Tbody> diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 74ce97516..aadc507f5 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -34,6 +34,7 @@ import useNewResourceHighlight from "../utils/useNewResourceHighlight"; import { FolderContextMenu } from "./ContextMenu"; import { getFileName, getLinkFileName } from "./FileCard"; import { getFolderName } from "./FolderCard"; +import TruncatedText from "./TruncatedText"; interface TableProps { data: { @@ -148,7 +149,7 @@ const BaseRow: React.FC<RowProps> = ({ isSelected: isSelected, }} /> - <Td dataLabel={columnNames.name}> + <Td dataLabel={columnNames.name} modifier="truncate"> <Button onClick={(e) => { e.stopPropagation(); @@ -158,23 +159,21 @@ const BaseRow: React.FC<RowProps> = ({ icon={icon} variant="link" > - {name} + <TruncatedText text={name} className="pf-c-button__text" /> </Button> - <span - style={{ - display: "inline-block", - width: "90px", - marginLeft: "0.25em", - }} - > - {isNewResource ? <Tag color="#3E8635">Newly Added</Tag> : null} - </span> + {isNewResource && ( + <span style={{ marginLeft: "0.5em" }}> + <Tag color="#3E8635">Newly Added</Tag> + </span> + )} + </Td> + <Td dataLabel={columnNames.date} modifier="truncate"> + <TruncatedText text={format(new Date(date), "dd MMM yyyy, HH:mm")} /> </Td> - <Td dataLabel={columnNames.date}> - {format(new Date(date), "dd MMM yyyy, HH:mm")} + <Td dataLabel={columnNames.owner} modifier="truncate"> + <TruncatedText text={owner} /> </Td> - <Td dataLabel={columnNames.owner}>{owner}</Td> - <Td dataLabel={columnNames.size}> + <Td dataLabel={columnNames.size} modifier="truncate"> {size > 0 ? formatBytes(size, 0) : " "} </Td> </Tr> @@ -308,19 +307,32 @@ const LibraryTable: React.FC<TableProps> = ({ variant="compact" aria-label="Simple table" isStriped={true} + isStickyHeader={true} > <Caption>Data Library</Caption> <Thead> <Tr> <Th screenReaderText="Select a row" arial-label="Select a row" /> - <Th sort={{ sortBy, onSort, columnIndex: 1 }} name="name"> + <Th + sort={{ sortBy, onSort, columnIndex: 1 }} + width={40} + name="name" + > {columnNames.name} </Th> - <Th sort={{ sortBy, onSort, columnIndex: 2 }} name="date"> + <Th + sort={{ sortBy, onSort, columnIndex: 2 }} + width={20} + name="date" + > {columnNames.date} </Th> - <Th name="owner">{columnNames.owner}</Th> - <Th name="size">{columnNames.size}</Th> + <Th name="owner"> + {columnNames.owner} width={20} + </Th> + <Th name="size"> + {columnNames.size} width={20} + </Th> </Tr> </Thead> <Tbody> diff --git a/src/components/NewLibrary/components/TruncatedText.tsx b/src/components/NewLibrary/components/TruncatedText.tsx new file mode 100644 index 000000000..3fbf22fc3 --- /dev/null +++ b/src/components/NewLibrary/components/TruncatedText.tsx @@ -0,0 +1,34 @@ +import React, { useRef, useEffect, useState } from "react"; +import { Tooltip } from "@patternfly/react-core"; + +interface TruncatedTextProps { + text: string; + className?: string; +} + +const TruncatedText: React.FC<TruncatedTextProps> = React.memo( + ({ text, className }) => { + const textRef = useRef<HTMLSpanElement>(null); + const [isTruncated, setIsTruncated] = useState(false); + useEffect(() => { + const { current } = textRef; + /* + clientWidth: Represents the inner width of an element (excluding borders and scrollbars). It's essentially the width available for the content. + scrollWidth: Represents the total width of the element's content, including the portion not visible on the screen due to overflow. + * */ + if (current) { + setIsTruncated(current.scrollWidth > current.clientWidth); + } + }, []); + + return ( + <Tooltip content={text} isVisible={isTruncated} trigger="mouseenter"> + <span ref={textRef} className={className}> + {text} + </span> + </Tooltip> + ); + }, +); + +export default TruncatedText; From 7d74ffac77ff92cbefc7615431a50fa3fa0b5327 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 3 Oct 2024 12:57:53 -0400 Subject: [PATCH 275/337] refactor: General cleanup --- .../FeedOutputBrowser/useFeedBrowser.tsx | 10 +++---- src/components/NewLibrary/index.tsx | 30 ++++++++++++++++--- 2 files changed, 31 insertions(+), 9 deletions(-) diff --git a/src/components/FeedOutputBrowser/useFeedBrowser.tsx b/src/components/FeedOutputBrowser/useFeedBrowser.tsx index 7270d5c47..5f48e72ad 100644 --- a/src/components/FeedOutputBrowser/useFeedBrowser.tsx +++ b/src/components/FeedOutputBrowser/useFeedBrowser.tsx @@ -1,5 +1,5 @@ import { keepPreviousData, useQuery } from "@tanstack/react-query"; -import { useEffect, useRef, useState } from "react"; +import { useCallback, useEffect, useRef, useState } from "react"; import { useAppSelector } from "../../store/hooks"; import { fetchFolders } from "../NewLibrary"; @@ -56,9 +56,9 @@ export const useFeedBrowser = () => { }); // Handle pagination by incrementing the page number - const handlePagination = () => { + const handlePagination = useCallback(() => { setPageNumber((prevState) => prevState + 1); - }; + }, []); const observerTarget = useRef(null); @@ -87,7 +87,7 @@ export const useFeedBrowser = () => { observer.unobserve(observerTarget.current); } }; - }, [fetchMore]); + }, [fetchMore, handlePagination]); useEffect(() => { if ((statusTitle && status.includes(statusTitle)) || finished) { @@ -103,7 +103,7 @@ export const useFeedBrowser = () => { }, 3000); } } - }, [finished, pluginFilesPayload, statusTitle, download.error]); + }, [finished, statusTitle, download.error]); useEffect(() => { setCurrentPath(selected?.data.output_path); diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index e1761e65a..d2a1c7976 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -6,7 +6,7 @@ import type { import { Button, Grid, PageSection } from "@patternfly/react-core"; import { keepPreviousData, useQuery } from "@tanstack/react-query"; import { debounce } from "lodash"; -import { useEffect, useRef, useState } from "react"; +import { useCallback, useEffect, useRef, useState } from "react"; import { useLocation, useNavigate } from "react-router"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useAppSelector } from "../../store/hooks"; @@ -146,7 +146,7 @@ const NewLibrary = () => { }); }); } - }, [data?.errorMessages]); + }, [api.error, data?.errorMessages]); const fetchMore = data?.foldersPagination?.hasNextPage || @@ -158,12 +158,34 @@ const NewLibrary = () => { navigate(url); }, 500); - const handlePagination = () => { + const handlePagination = useCallback(() => { setPageNumber((prevState) => prevState + 1); - }; + }, []); const observerTarget = useRef(null); + // Set up an intersection observer to load more data when the user scrolls to the bottom of the page + useEffect(() => { + const observer = new IntersectionObserver( + (entries) => { + if (entries[0].isIntersecting && fetchMore) { + handlePagination(); + } + }, + { threshold: 0.5 }, + ); + + if (observerTarget.current) { + observer.observe(observerTarget.current); + } + + return () => { + if (observerTarget.current) { + observer.unobserve(observerTarget.current); + } + }; + }, [fetchMore, handlePagination]); + if (isFirstLoad && pathname === "/library") { return null; } From f1d568dd9022a338d7adad902e5957cc0c5745ee Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 3 Oct 2024 14:51:24 -0400 Subject: [PATCH 276/337] feat: Fix dicom indicators in light mode --- src/components/Preview/displays/DcmDisplay.tsx | 14 +++++++++++--- 1 file changed, 11 insertions(+), 3 deletions(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 6bd92a170..22da60a67 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -261,7 +261,13 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { ) { handlePagination(); } - }, [fetchMore, handlePagination, filesLoading]); + }, [ + fetchMore, + filteredList, + lastProcessedIndex, + handlePagination, + filesLoading, + ]); useEffect(() => { if (activeViewport && filteredList && handlePagination) { @@ -296,9 +302,11 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { zIndex: "99999", }} > - {`Current Index: ${currentImageIndex + 1} (${currentImageIndex + 1}/${imageStack.length})`} + <div style={{ color: "#fff" }}> + {`Current Index: ${currentImageIndex + 1} (${currentImageIndex + 1}/${imageStack.length})`} + </div> {isLoadingMore && ( - <div> + <div style={{ color: "#fff" }}> <i>Loading more...</i> </div> )} From c3765d96578e44ba0fd4f7f9eed77a342796dfee Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 3 Oct 2024 16:27:00 -0400 Subject: [PATCH 277/337] feat: Responsive layout for the feed detail view page --- package.json | 1 + pnpm-lock.yaml | 39 +++++++ src/api/common.ts | 2 +- src/components/Icons/index.tsx | 2 + src/components/Pacs/index.tsx | 2 +- src/components/Wrapper/Toolbar.tsx | 174 +++++++++++++++++------------ src/routes.tsx | 2 +- 7 files changed, 148 insertions(+), 74 deletions(-) diff --git a/package.json b/package.json index 16d54268b..8eaa9c059 100644 --- a/package.json +++ b/package.json @@ -88,6 +88,7 @@ "react-lazylog": "^4.5.3", "react-redux": "^9.1.2", "react-resizable-panels": "^2.1.4", + "react-responsive": "^10.0.0", "react-router": "^6.26.2", "react-router-dom": "^6.26.2", "redux-saga": "^1.3.0", diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index 83020e3f8..59dc79035 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -161,6 +161,9 @@ importers: react-resizable-panels: specifier: ^2.1.4 version: 2.1.4(react-dom@18.3.1(react@18.3.1))(react@18.3.1) + react-responsive: + specifier: ^10.0.0 + version: 10.0.0(react@18.3.1) react-router: specifier: ^6.26.2 version: 6.26.2(react@18.3.1) @@ -2173,6 +2176,9 @@ packages: crypto-browserify@3.12.0: resolution: {integrity: sha512-fz4spIh+znjO2VjL+IdhEpRJ3YN6sMzITSBijk6FK2UvTqruSQW+/cCZTSNsMiZNvUeq0CqurF+dAbyiGOY6Wg==} + css-mediaquery@0.1.2: + resolution: {integrity: sha512-COtn4EROW5dBGlE/4PiKnh6rZpAPxDeFLaEEwt4i10jpDMFt2EhQGS79QmmrO+iKCHv0PU/HrOWEhijFd1x99Q==} + cssfilter@0.0.10: resolution: {integrity: sha512-FAaLDaplstoRsDR8XGYH51znUN0UY7nMc6Z9/fvE8EXGwvJE9hu7W2vHwx1+bd6gCYnln9nLbzxFTrcO9YQDZw==} @@ -2708,6 +2714,9 @@ packages: https-browserify@1.0.0: resolution: {integrity: sha512-J+FkSdyD+0mA0N+81tMotaRMfSL9SGi+xpD3T6YApKsc3bGSXJlfXri3VyFOeYkfLRQisDk1W+jIFFKBeUBbBg==} + hyphenate-style-name@1.1.0: + resolution: {integrity: sha512-WDC/ui2VVRrz3jOVi+XtjqkDjiVjTtFaAGiW37k6b+ohyQ5wYDOGkvCZa8+H0nx3gyvv0+BST9xuOgIyGQ00gw==} + ieee754@1.2.1: resolution: {integrity: sha512-dcyqhDvX1C46lXZcVqCpK+FtMRQVdIMN6/Df5js2zouUsqG7I6sFxitIC+7KYK29KdXOLHdu9zL4sFnoVQnqaA==} @@ -3035,6 +3044,9 @@ packages: engines: {node: '>= 18'} hasBin: true + matchmediaquery@0.4.2: + resolution: {integrity: sha512-wrZpoT50ehYOudhDjt/YvUJc6eUzcdFPdmbizfgvswCKNHD1/OBOHYJpHie+HXpu6bSkEGieFMYk6VuutaiRfA==} + md5.js@1.3.5: resolution: {integrity: sha512-xitP+WxNPcTTOgnTJcrhM0xvdPepipPSf3I8EIpGKeFLjt3PlJLIDG3u8EX53ZIubkb+5U2+3rELYpEhHhzdkg==} @@ -3776,6 +3788,12 @@ packages: react: ^16.14.0 || ^17.0.0 || ^18.0.0 react-dom: ^16.14.0 || ^17.0.0 || ^18.0.0 + react-responsive@10.0.0: + resolution: {integrity: sha512-N6/UiRLGQyGUqrarhBZmrSmHi2FXSD++N5VbSKsBBvWfG0ZV7asvUBluSv5lSzdMyEVjzZ6Y8DL4OHABiztDOg==} + engines: {node: '>=14'} + peerDependencies: + react: '>=16.8.0' + react-router-dom@6.26.2: resolution: {integrity: sha512-z7YkaEW0Dy35T3/QKPYB1LjMK2R1fxnHO8kWpUMTBdfVzZrWOiY9a7CtN8HqdWtDUWd5FY6Dl8HFsqVwH4uOtQ==} engines: {node: '>=14.0.0'} @@ -3958,6 +3976,9 @@ packages: shader-loader@1.3.1: resolution: {integrity: sha512-dt8F9K0x4rjmaFyHh7rNDfpt4LUiR64zhNIEwp2WbE99B3z4ALuvvmhftkElg93dUD6sTmv/aXa/z9SJiEddcA==} + shallow-equal@3.1.0: + resolution: {integrity: sha512-pfVOw8QZIXpMbhBWvzBISicvToTiM5WBF1EeAUZDDSb5Dt29yl4AYbyywbJFSEsRUMr7gJaxqCdr4L3tQf9wVg==} + shebang-command@2.0.0: resolution: {integrity: sha512-kHxr2zZpYtdmrN1qDjrrX/Z1rR1kG8Dx+gkpK1G4eXmvXswmcE1hTWBWYUzlraYw1/yZp6YuDY77YtvbN0dmDA==} engines: {node: '>=8'} @@ -6822,6 +6843,8 @@ snapshots: randombytes: 2.1.0 randomfill: 1.0.4 + css-mediaquery@0.1.2: {} + cssfilter@0.0.10: {} csstype@3.1.3: {} @@ -7371,6 +7394,8 @@ snapshots: https-browserify@1.0.0: {} + hyphenate-style-name@1.1.0: {} + ieee754@1.2.1: {} immer@10.1.1: {} @@ -7668,6 +7693,10 @@ snapshots: marked@14.1.2: {} + matchmediaquery@0.4.2: + dependencies: + css-mediaquery: 0.1.2 + md5.js@1.3.5: dependencies: hash-base: 3.1.0 @@ -8668,6 +8697,14 @@ snapshots: react: 18.3.1 react-dom: 18.3.1(react@18.3.1) + react-responsive@10.0.0(react@18.3.1): + dependencies: + hyphenate-style-name: 1.1.0 + matchmediaquery: 0.4.2 + prop-types: 15.8.1 + react: 18.3.1 + shallow-equal: 3.1.0 + react-router-dom@6.26.2(react-dom@18.3.1(react@18.3.1))(react@18.3.1): dependencies: '@remix-run/router': 1.19.2 @@ -8887,6 +8924,8 @@ snapshots: dependencies: loader-utils: 1.4.2 + shallow-equal@3.1.0: {} + shebang-command@2.0.0: dependencies: shebang-regex: 3.0.0 diff --git a/src/api/common.ts b/src/api/common.ts index 46b1686ea..23b12c289 100644 --- a/src/api/common.ts +++ b/src/api/common.ts @@ -1,4 +1,4 @@ -import * as React from "react"; +import React from "react"; import axios, { type AxiosProgressEvent } from "axios"; import ChrisAPIClient from "./chrisapiclient"; import type { diff --git a/src/components/Icons/index.tsx b/src/components/Icons/index.tsx index 2af1624dc..90280dce7 100644 --- a/src/components/Icons/index.tsx +++ b/src/components/Icons/index.tsx @@ -32,6 +32,7 @@ import { CheckCircleIcon, BarsIcon, GripVerticalIcon, + ToolsIcon, } from "@patternfly/react-icons"; const CartIcon = ({ @@ -308,4 +309,5 @@ export { RetryIcon, BarsIcon, GripVerticalIcon, + ToolsIcon, }; diff --git a/src/components/Pacs/index.tsx b/src/components/Pacs/index.tsx index 294865ac2..c08aa6698 100644 --- a/src/components/Pacs/index.tsx +++ b/src/components/Pacs/index.tsx @@ -13,7 +13,7 @@ import { } from "@patternfly/react-core"; import SearchIcon from "@patternfly/react-icons/dist/esm/icons/search-icon"; import { Alert, Spin } from "../Antd"; -import * as React from "react"; +import React from "react"; import { useNavigate } from "react-router"; import { useSearchParams } from "react-router-dom"; import { pluralize } from "../../api/common"; diff --git a/src/components/Wrapper/Toolbar.tsx b/src/components/Wrapper/Toolbar.tsx index 9fdd8e347..386b27f5d 100644 --- a/src/components/Wrapper/Toolbar.tsx +++ b/src/components/Wrapper/Toolbar.tsx @@ -6,19 +6,23 @@ import { Flex, FlexItem, MenuToggle, + Modal, Switch, + Tooltip, } from "@patternfly/react-core"; +import { BarsIcon } from "@patternfly/react-icons"; // Add a tools icon import { useQueryClient } from "@tanstack/react-query"; -import * as React from "react"; +import React from "react"; import { useCookies } from "react-cookie"; +import { useMediaQuery } from "react-responsive"; import { useLocation, useNavigate } from "react-router"; import ChrisAPIClient from "../../api/chrisapiclient"; +import { clearCartOnLogout } from "../../store/cart/cartSlice"; import { useAppDispatch, useAppSelector } from "../../store/hooks"; import { setLogoutSuccess } from "../../store/user/userSlice"; import { ThemeContext } from "../DarkTheme/useTheme"; import FeedDetails from "../FeedDetails"; import CartNotify from "./CartNotify"; -import { clearCartOnLogout } from "../../store/cart/cartSlice"; type ToolbarComponentProps = { showToolbar: boolean; @@ -29,6 +33,8 @@ type ToolbarComponentProps = { const ToolbarComponent: React.FC<ToolbarComponentProps> = ( props: ToolbarComponentProps, ) => { + const isSmallerScreen = useMediaQuery({ maxWidth: 1224 }); + const { token, titleComponent } = props; const dispatch = useAppDispatch(); const navigate = useNavigate(); @@ -38,6 +44,7 @@ const ToolbarComponent: React.FC<ToolbarComponentProps> = ( const queryClient = useQueryClient(); const username = useAppSelector((state) => state.user.username); const [dropdownOpen, setIsDropdownOpen] = React.useState(false); + const [trayOpen, setTrayOpen] = React.useState(false); // State for tray visibility const handleChange = () => { toggleTheme(); @@ -81,78 +88,103 @@ const ToolbarComponent: React.FC<ToolbarComponentProps> = ( </DropdownItem>, ]; + const toggleTray = () => { + setTrayOpen(!trayOpen); + }; + return ( - <Flex - justifyContent={{ default: "justifyContentSpaceBetween" }} - alignItems={{ default: "alignItemsCenter" }} - style={{ - width: "100%", - }} - > - <FlexItem>{titleComponent && titleComponent}</FlexItem> - {/* Center */} - <FlexItem flex={{ default: "flex_1" }}> - {props.showToolbar && <FeedDetails />} - </FlexItem> + <> + <Flex + justifyContent={{ default: "justifyContentSpaceBetween" }} + alignItems={{ default: "alignItemsCenter" }} + style={{ + width: "100%", + }} + > + <FlexItem>{titleComponent && titleComponent}</FlexItem> + {/* Center */} + <FlexItem flex={{ default: "flex_1" }}> + {props.showToolbar && !isSmallerScreen && <FeedDetails />} + </FlexItem> - {/* Right section */} - <FlexItem align={{ default: "alignRight" }}> - <Flex - alignItems={{ default: "alignItemsCenter" }} - spaceItems={{ default: "spaceItemsMd" }} - > - <FlexItem> - <CartNotify /> - </FlexItem> - <FlexItem> - <Switch - id="simple-switch" - label="Theme" - isChecked={isDarkTheme} - onChange={handleChange} - ouiaId="Basic Switch" - /> - </FlexItem> - <FlexItem> - {token ? ( - <Dropdown - isPlain - onSelect={onDropdownToggle} - isOpen={dropdownOpen} - toggle={(toggleRef) => ( - <MenuToggle ref={toggleRef} onClick={onDropdownToggle}> - {username} - </MenuToggle> - )} - > - <DropdownList>{userDropdownItems}</DropdownList> - </Dropdown> - ) : ( - <> - <Button - style={{ padding: "0.25em" }} - variant="link" - onClick={() => { - navigate( - `/login?redirectTo=${location.pathname}${location.search}`, - ); - }} - > - Login - </Button> - <Button - style={{ padding: "0.25em" }} - variant="link" - onClick={() => navigate("/signup")} - > - Sign Up - </Button> - </> + {/* Right section */} + <FlexItem align={{ default: "alignRight" }}> + <Flex + alignItems={{ default: "alignItemsCenter" }} + spaceItems={{ default: "spaceItemsMd" }} + > + {isSmallerScreen && ( + <FlexItem> + <Tooltip position="bottom" content="Configure Panels"> + <Button + variant="plain" + aria-label="Tools" + onClick={toggleTray} + icon={<BarsIcon />} + /> + </Tooltip> + </FlexItem> )} - </FlexItem> - </Flex> - </FlexItem> - </Flex> + <FlexItem> + <CartNotify /> + </FlexItem> + <FlexItem> + <Switch + id="simple-switch" + label="Theme" + isChecked={isDarkTheme} + onChange={handleChange} + ouiaId="Basic Switch" + /> + </FlexItem> + <FlexItem> + {token ? ( + <Dropdown + isPlain + onSelect={onDropdownToggle} + isOpen={dropdownOpen} + toggle={(toggleRef) => ( + <MenuToggle ref={toggleRef} onClick={onDropdownToggle}> + {username} + </MenuToggle> + )} + > + <DropdownList>{userDropdownItems}</DropdownList> + </Dropdown> + ) : ( + <> + <Button + style={{ padding: "0.25em" }} + variant="link" + onClick={() => { + navigate( + `/login?redirectTo=${location.pathname}${location.search}`, + ); + }} + > + Login + </Button> + <Button + style={{ padding: "0.25em" }} + variant="link" + onClick={() => navigate("/signup")} + > + Sign Up + </Button> + </> + )} + </FlexItem> + </Flex> + </FlexItem> + </Flex> + + {/* Modal tray for FeedDetails */} + {isSmallerScreen && trayOpen && ( + <Modal isOpen={trayOpen} onClose={toggleTray} title="" variant="small"> + <FeedDetails /> + </Modal> + )} + </> ); }; diff --git a/src/routes.tsx b/src/routes.tsx index 07a73ba6a..08de7e851 100644 --- a/src/routes.tsx +++ b/src/routes.tsx @@ -1,4 +1,4 @@ -import * as React from "react"; +import React from "react"; import { useNavigate, useRoutes, From 710157c1a8000be3498ac1c698b239f76099a5b5 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 3 Oct 2024 16:49:20 -0400 Subject: [PATCH 278/337] fix: Fix Dicom Display --- src/components/Preview/displays/DcmDisplay.tsx | 1 + 1 file changed, 1 insertion(+) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 22da60a67..6c8fa753f 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -118,6 +118,7 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { queryKey: ["cornerstone-preview", selectedFile], queryFn: setupCornerstone, enabled: !!selectedFile, + refetchOnMount: true, }); useEffect(() => { From 3c380b5f63c7045c182ee87740443b6abf49b17d Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 4 Oct 2024 10:20:52 -0400 Subject: [PATCH 279/337] feat: Add a success notification to the config form --- src/components/Store/index.tsx | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index db8f7e80f..1231d68e3 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -139,11 +139,10 @@ const Store: React.FC = () => { } fetchComputeResources(); - }, [api, compute_resource, isLoggedIn]); + }, [compute_resource, isLoggedIn]); useEffect(() => { document.title = "Store Catalog"; - setTempURLValue(configure_url || defaultStoreURL); setConfigureURL(configure_url || defaultStoreURL); }, [isStaff, configure_url, defaultStoreURL, isLoggedIn]); @@ -267,13 +266,17 @@ const Store: React.FC = () => { path: "/", maxAge: 86400, }); - // Update the configureURL setConfigureURL(tempURLValue); - // Close the modal setIsConfigModalOpen(false); + // Notify the user of the successful config save + api.success({ + message: "Configuration Saved", + description: "Your configuration has been saved successfully.", + duration: 1, + }); // If there is a plugin pending installation, proceed to install if (installingPlugin) { handleSave(); From 6a4fe34045023b04e00b49de44ca64df88b896e5 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 4 Oct 2024 11:49:18 -0400 Subject: [PATCH 280/337] feat: Fix a regression in the Library Page --- src/components/Feeds/Feeds.css | 6 +++--- src/components/NewLibrary/components/LibraryTable.tsx | 8 ++++---- 2 files changed, 7 insertions(+), 7 deletions(-) diff --git a/src/components/Feeds/Feeds.css b/src/components/Feeds/Feeds.css index 3ec35f3ff..3eec65139 100644 --- a/src/components/Feeds/Feeds.css +++ b/src/components/Feeds/Feeds.css @@ -55,7 +55,7 @@ .ResizeHandle, .ResizeHandleVertical, .ResizeHandleCollapsed { - background-color: gray; /* Default background color */ + background-color:#4F5255; /* Default background color */ transition: background-color 250ms linear; } @@ -80,13 +80,13 @@ .ResizeHandleVertical[data-resize-handle-active], .ResizeHandleCollapsed:hover, .ResizeHandleCollapsed[data-resize-handle-active] { - background-color: var(--pf-global--active-color--400); /* PatternFly blue */ + background-color:#8A8D90 ; /* PatternFly blue */ } /* Adjust for touch devices */ @media (pointer: coarse) { .ResizeHandle { - width: 1rem; + width: 0.5em; } .ResizeHandleVertical { height: 1rem; diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index aadc507f5..14271c1c5 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -327,11 +327,11 @@ const LibraryTable: React.FC<TableProps> = ({ > {columnNames.date} </Th> - <Th name="owner"> - {columnNames.owner} width={20} + <Th name="owner" width={20}> + {columnNames.owner} </Th> - <Th name="size"> - {columnNames.size} width={20} + <Th name="size" width={20}> + {columnNames.size} </Th> </Tr> </Thead> From 75b1eb560754eb115a73bbbbf0a512227c194898 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Mon, 7 Oct 2024 20:38:38 -0400 Subject: [PATCH 281/337] feat: Fix dcm display for multi stack scroll --- src/components/FeedTree/useSize.tsx | 8 - .../Preview/displays/DcmDisplay.tsx | 461 ++++++++++-------- .../Preview/displays/ImageDisplay.tsx | 2 +- .../Preview/displays/dicomUtils/utils.ts | 4 +- 4 files changed, 256 insertions(+), 219 deletions(-) diff --git a/src/components/FeedTree/useSize.tsx b/src/components/FeedTree/useSize.tsx index b3d323365..ef5552a71 100644 --- a/src/components/FeedTree/useSize.tsx +++ b/src/components/FeedTree/useSize.tsx @@ -9,14 +9,6 @@ const useSize = ( // size is of type DOMRectReadOnly or undefined initially const [size, setSize] = React.useState<DOMRectReadOnly | undefined>(); - React.useLayoutEffect(() => { - if (target.current) { - // Safely access getBoundingClientRect() method - const rect = target.current.getBoundingClientRect(); - setSize(rect); - } - }, [target]); - useResizeObserver(target, (entry) => setSize(entry.contentRect)); return size; diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 6c8fa753f..80814dc9a 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -1,26 +1,21 @@ import type { RenderingEngine } from "@cornerstonejs/core"; import { useQuery } from "@tanstack/react-query"; -import { useEffect, useRef, useState, useMemo } from "react"; -import { v4 } from "uuid"; -import { type IFileBlob, getFileExtension } from "../../../api/model"; +import { useCallback, useEffect, useRef, useState, useMemo } from "react"; +import { getFileExtension, type IFileBlob } from "../../../api/model"; import { SpinContainer } from "../../Common"; import useSize from "../../FeedTree/useSize"; import type { ActionState } from "../FileDetailView"; import { - events, - type IStackViewport, basicInit, - cleanupCornerstoneTooling, displayDicomImage, loadDicomImage, - registerToolingOnce, - removeTools, setUpTooling, + events, } from "./dicomUtils/utils"; -import { handleEvents } from "./dicomUtils/utils"; +import type { IStackViewport } from "./dicomUtils/utils"; export type DcmImageProps = { - selectedFile?: IFileBlob; + selectedFile: IFileBlob; actionState: ActionState; preview: string; list?: IFileBlob[]; @@ -29,267 +24,309 @@ export type DcmImageProps = { filesLoading?: boolean; }; -const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { +const TOOL_KEY = "cornerstone-display"; +const CACHE_KEY = "cornerstone-stack"; + +type ImageStackType = { + [key: string]: string | string[]; +}; + +const DcmDisplay = (props: DcmImageProps) => { const { selectedFile, - actionState, - preview, - list = [], // Default to empty array - fetchMore, + list, handlePagination, + fetchMore, + preview, filesLoading, } = props; - const [activeViewport, setActiveViewport] = useState< - IStackViewport | undefined - >(); const [currentImageIndex, setCurrentImageIndex] = useState(0); + const [imageStack, setImageStack] = useState<ImageStackType>({}); const [multiFrameDisplay, setMultiframeDisplay] = useState(false); - const [imageStack, setImageStack] = useState<string[]>([]); - const [renderingEngine, setRenderingEngine] = useState<RenderingEngine>(); const [isLoadingMore, setIsLoadingMore] = useState(false); - const [lastProcessedIndex, setLastProcessedIndex] = useState(0); // Track last processed file index + const [lastLoadedIndex, setLastLoadedIndex] = useState(0); const dicomImageRef = useRef<HTMLDivElement>(null); - const uniqueId = `${selectedFile?.data.id || v4()}`; - const elementId = `cornerstone-element-${uniqueId}`; + const elementRef = useRef<HTMLDivElement>(null); + const renderingEngineRef = useRef<RenderingEngine | null>(null); + const activeViewportRef = useRef<IStackViewport | null>(null); + const cacheRef = useRef<{ [key: string]: ImageStackType }>({ + [CACHE_KEY]: {}, + }); + const size = useSize(dicomImageRef); + const cacheStack = cacheRef.current[CACHE_KEY]; + const fname = selectedFile.data.fname; - const handleResize = () => { - if (dicomImageRef.current && size) { - const parentWidth = size.width; - const parentHeight = size.height; - const element = document.getElementById(elementId); - if (element) { - element.style.width = `${parentWidth}px`; - element.style.height = `${parentHeight}px`; - renderingEngine?.resize(true, true); - activeViewport?.resize(); - } + // Handle resizing of the DICOM image viewer + const handleResize = useCallback(() => { + if (dicomImageRef.current && size && elementRef.current) { + const { width, height } = size; + elementRef.current.style.width = `${width}px`; + elementRef.current.style.height = `${height}px`; + renderingEngineRef.current?.resize(true, true); + activeViewportRef.current?.resize(); } - }; + }, [size]); useEffect(() => { window.addEventListener("resize", handleResize); + handleResize(); // Initial resize return () => { window.removeEventListener("resize", handleResize); }; - }, [size, renderingEngine, activeViewport]); + }, [handleResize]); + // Initialize Cornerstone useEffect(() => { - registerToolingOnce(); - return () => { - renderingEngine?.destroy(); - removeTools(); - cleanupCornerstoneTooling(); + const setupCornerstone = async () => { + await basicInit(); + setUpTooling(TOOL_KEY); }; + setupCornerstone(); }, []); - async function setupCornerstone() { - const element = document.getElementById(elementId) as HTMLDivElement; - if (selectedFile) { - await basicInit(); - setUpTooling(uniqueId); - const blob = await selectedFile.getFileBlob(); - const imageData = await loadDicomImage(blob); - const imageID = imageData.imageID; - const framesCount = imageData.framesCount; - const newImageStack = - framesCount > 1 - ? Array.from( - { length: framesCount }, - (_, i) => `${imageID}?frame=${i}`, - ) - : [imageID]; - - const { viewport, renderingEngine: newRenderingEngine } = - await displayDicomImage(element, newImageStack[0], uniqueId); - - setMultiframeDisplay(framesCount > 1); - setActiveViewport(viewport); - setRenderingEngine(newRenderingEngine); - setImageStack(newImageStack); - - return selectedFile.data.fname; - } - } - - const { isLoading } = useQuery({ - queryKey: ["cornerstone-preview", selectedFile], - queryFn: setupCornerstone, - enabled: !!selectedFile, - refetchOnMount: true, - }); - - useEffect(() => { - if (actionState && activeViewport) { - handleEvents(actionState, activeViewport); - } - }, [actionState, activeViewport]); - - useEffect(() => { - handleResize(); - }, [size]); - // Filter the list to include only DICOM files - const filteredList: IFileBlob[] = useMemo( + const filteredList = useMemo( () => - list.filter( - (file) => getFileExtension(file.data.fname).toLowerCase() === "dcm", - ), + list?.filter((file) => getFileExtension(file.data.fname) === "dcm") || [], [list], ); - const loadMultiFrames = async () => { - if (activeViewport) { - const currentIndex = activeViewport.getCurrentImageIdIndex(); - await activeViewport.setStack(imageStack, currentIndex); - activeViewport.render(); + // Preview the selected DICOM file + const previewFile = useCallback(async () => { + if (!elementRef.current) return {}; + + const existingImageEntry = cacheStack?.[fname]; + + if (existingImageEntry && activeViewportRef.current) { + let imageIDs: string[]; + let index: number; + + if (Array.isArray(existingImageEntry)) { + // Multi-frame image + imageIDs = existingImageEntry; + index = currentImageIndex; + setMultiframeDisplay(true); + } else { + // Single-frame images + imageIDs = Object.values(cacheStack).flat() as string[]; + index = imageIDs.findIndex((id) => id === existingImageEntry); + setMultiframeDisplay(false); + } + + await activeViewportRef.current.setStack( + imageIDs, + index !== -1 ? index : 0, + ); + activeViewportRef.current.render(); + + return cacheStack; } - }; - const loadImage = async (file: IFileBlob): Promise<string | null> => { - const fileName = file.data.fname; - const extension = getFileExtension(fileName); - if (extension !== "dcm") return null; - const blob = await file.getFileBlob(); + // Load new image if not in cache + const blob = await selectedFile.getFileBlob(); const imageData = await loadDicomImage(blob); - return imageData.imageID; - }; - - const loadImagesInBatches = async ( - start: number, - end: number, - skipIndex: number, - abortSignal: AbortSignal, - ) => { - setIsLoadingMore(true); - const generator = imageBatchGenerator(start, end, skipIndex, abortSignal); - const newImageStack: string[] = []; // Temporary stack to hold new images - try { - for await (const newImage of generator) { - if (abortSignal.aborted) { - setIsLoadingMore(false); - break; // Exit the loop if the signal is aborted - } - newImageStack.push(newImage); - } + const { framesCount, imageID } = imageData; - // Update the image stack synchronously - setImageStack((prevStack) => [...prevStack, ...newImageStack]); + const framesList = + framesCount > 1 + ? Array.from({ length: framesCount }, (_, i) => `${imageID}?frame=${i}`) + : imageID; - // Handle the async viewport operations separately - if (activeViewport) { - const currentIndex = activeViewport.getCurrentImageIdIndex(); + const newImageStack: ImageStackType = { + [fname]: framesList, + }; - // Await async calls outside of the setState - await activeViewport.setStack( - [...imageStack, ...newImageStack], - currentIndex > 0 ? currentIndex : skipIndex, - ); - currentIndex === 0 && (await activeViewport.setImageIdIndex(skipIndex)); - activeViewport.render(); - setIsLoadingMore(false); - } - } catch (err) { + const elementId = `cornerstone-element-${fname}`; + const { viewport, renderingEngine } = await displayDicomImage( + elementRef.current, + framesCount > 1 ? framesList[0] : imageID, + elementId, + ); + + setMultiframeDisplay(framesCount > 1); + activeViewportRef.current = viewport; + renderingEngineRef.current = renderingEngine; + + setImageStack(newImageStack); + cacheRef.current[CACHE_KEY] = newImageStack; + return newImageStack; + }, [selectedFile, cacheStack, fname, currentImageIndex]); + + const { isLoading, data } = useQuery({ + queryKey: ["cornerstone-preview", fname], + queryFn: previewFile, + enabled: !!selectedFile && !!elementRef.current, + }); + + // Clean up when the component unmounts + useEffect(() => { + return () => { + renderingEngineRef.current?.destroy(); + cacheRef.current = { [CACHE_KEY]: {} }; setIsLoadingMore(false); - if (abortSignal.aborted) { - } else { - console.error("Error loading images:", err); + setLastLoadedIndex(0); + setImageStack({}); + if (elementRef.current) { + elementRef.current.removeEventListener( + events.IMAGE_RENDERED, + handleImageRendered, + ); } + }; + }, []); + + // Load multi-frame images + const loadMultiFrames = useCallback(async () => { + if (activeViewportRef.current) { + const currentIndex = activeViewportRef.current.getCurrentImageIdIndex(); + const imageIDs = imageStack[fname] as string[]; + await activeViewportRef.current.setStack(imageIDs, currentIndex); + activeViewportRef.current.render(); + } + }, [imageStack, fname]); + + // Generator for loading image files + function* imageFileGenerator(list: IFileBlob[], startIndex: number) { + for (let i = startIndex; i < list.length; i++) { + yield list[i]; } - }; - - async function* imageBatchGenerator( - start: number, - end: number, - skipIndex: number, - abortSignal: AbortSignal, // Include abort signal - ) { - for (let i = start; i < end; i++) { - if (abortSignal.aborted) { - return; // Exit the generator early if aborted + } + + // Load more images when needed + const loadMoreImages = useCallback( + async (filteredList: IFileBlob[]) => { + if (Object.keys(cacheStack).length === filteredList.length) { + setImageStack(cacheStack); + if (activeViewportRef.current) { + const currentIndex = + activeViewportRef.current.getCurrentImageIdIndex(); + const imageIDs = Object.values(cacheStack).flat() as string[]; + await activeViewportRef.current.setStack(imageIDs, currentIndex); + activeViewportRef.current.render(); + } + return; } - if (i === skipIndex) continue; + setIsLoadingMore(true); + const generator = imageFileGenerator(filteredList, lastLoadedIndex); + const newImages: ImageStackType = {}; - const file = filteredList[i]; - if (file) { - const imageID = await loadImage(file); - if (imageID) { - yield imageID; // Yield the image ID one by one + let next = generator.next(); + while (!next.done) { + const file = next.value; + if (cacheStack[file.data.fname]) { + next = generator.next(); + continue; } + + const blob = await file.getFileBlob(); + const imageData = await loadDicomImage(blob); + newImages[file.data.fname] = imageData.imageID; + next = generator.next(); } - } - } + const updatedImageStack = { ...cacheStack, ...newImages }; + setImageStack(updatedImageStack); + cacheRef.current[CACHE_KEY] = updatedImageStack; + + if (activeViewportRef.current) { + const currentIndex = activeViewportRef.current.getCurrentImageIdIndex(); + const imageIDs = Object.values(updatedImageStack).flat() as string[]; + await activeViewportRef.current.setStack(imageIDs, currentIndex); + activeViewportRef.current.render(); + } + + setLastLoadedIndex(lastLoadedIndex + Object.keys(newImages).length); + setIsLoadingMore(false); + }, + [cacheStack, lastLoadedIndex], + ); + + const loadingFirstFrame = isLoading || !data; + + // Load more images when scrolling near the end useEffect(() => { - const abortController = new AbortController(); - setLastProcessedIndex(0); - if (!isLoading && filteredList && !multiFrameDisplay) { - const selectedIndex = filteredList.findIndex( - (file) => file.data.fname === selectedFile?.data.fname, - ); - loadImagesInBatches( - lastProcessedIndex, - filteredList.length, - selectedIndex, - abortController.signal, - ); - setLastProcessedIndex(filteredList.length); - } else if (multiFrameDisplay) { - loadMultiFrames(); + if ( + !loadingFirstFrame && + !Array.isArray(data[selectedFile.data.fname]) && + filteredList.length > lastLoadedIndex && + Object.keys(cacheStack).length !== filteredList.length && + !multiFrameDisplay + ) { + loadMoreImages(filteredList); } - return () => { - abortController.abort(); // Cleanup: abort the ongoing image loading process if the component unmounts - }; + if (!loadingFirstFrame && multiFrameDisplay) { + loadMultiFrames(); + } }, [ - isLoading, + loadingFirstFrame, filteredList, - activeViewport, + lastLoadedIndex, + cacheStack, multiFrameDisplay, + loadMoreImages, + loadMultiFrames, + data, selectedFile, ]); - useEffect(() => { - if ( - filteredList && - fetchMore && - handlePagination && - !filesLoading && - lastProcessedIndex === filteredList.length - 1 - ) { - handlePagination(); + // Handle image rendering event + const handleImageRendered = useCallback(() => { + if (activeViewportRef.current) { + const newIndex = activeViewportRef.current.getCurrentImageIdIndex(); + setCurrentImageIndex(newIndex); + + if ( + filteredList && + newIndex >= filteredList.length - 5 && + fetchMore && + !filesLoading && + !isLoadingMore && + !loadingFirstFrame && + !multiFrameDisplay + ) { + handlePagination?.(); + } } }, [ - fetchMore, filteredList, - lastProcessedIndex, - handlePagination, + fetchMore, filesLoading, + isLoadingMore, + loadingFirstFrame, + multiFrameDisplay, + handlePagination, ]); + // Add event listener for image rendering useEffect(() => { - if (activeViewport && filteredList && handlePagination) { - const element = activeViewport.element; - const handleImageRendered = () => { - const newIndex = activeViewport.getCurrentImageIdIndex(); - setCurrentImageIndex(newIndex); - if (newIndex >= filteredList.length - 5 && fetchMore && !filesLoading) { - handlePagination(); - } - }; - element.addEventListener(events.IMAGE_RENDERED, handleImageRendered); - return () => { - element.removeEventListener(events.IMAGE_RENDERED, handleImageRendered); - }; + if (elementRef.current) { + elementRef.current.addEventListener( + events.IMAGE_RENDERED, + handleImageRendered, + ); } - }, [fetchMore, handlePagination, filesLoading, filteredList, activeViewport]); + return () => { + if (elementRef.current) { + elementRef.current.removeEventListener( + events.IMAGE_RENDERED, + handleImageRendered, + ); + } + }; + }, [handleImageRendered]); + + const imageCount = multiFrameDisplay + ? (imageStack[fname] as string[]).length + : Object.values(imageStack).flat().length; return ( <> - {isLoading && <SpinContainer title="Displaying image..." />} + {loadingFirstFrame && <SpinContainer title="Displaying image..." />} <div id="content" ref={dicomImageRef} @@ -300,11 +337,13 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { position: "absolute", top: "0.25em", right: "0.25em", - zIndex: "99999", + zIndex: 99999, }} > <div style={{ color: "#fff" }}> - {`Current Index: ${currentImageIndex + 1} (${currentImageIndex + 1}/${imageStack.length})`} + {`Current Index: ${currentImageIndex + 1} (${ + currentImageIndex + 1 + }/${imageCount})`} </div> {isLoadingMore && ( <div style={{ color: "#fff" }}> @@ -313,7 +352,11 @@ const DcmDisplay: React.FC<DcmImageProps> = (props: DcmImageProps) => { )} </div> - <div id={elementId} /> + <div + id={`cornerstone-element-${fname}`} + ref={elementRef} + style={{ width: "100%", height: "100%" }} + /> </div> </> ); diff --git a/src/components/Preview/displays/ImageDisplay.tsx b/src/components/Preview/displays/ImageDisplay.tsx index 833d409a1..e095fd369 100644 --- a/src/components/Preview/displays/ImageDisplay.tsx +++ b/src/components/Preview/displays/ImageDisplay.tsx @@ -45,7 +45,7 @@ const ImageDisplay: React.FunctionComponent<AllProps> = ({ selectedFile }) => { <img id={selectedFile?.data.fname || ""} src={url} - alt={selectedFile?.data.fname || "image"} + alt={selectedFile?.data.fname} onClick={(e) => e.preventDefault()} // Prevent default behavior on click onKeyDown={(e) => e.preventDefault()} style={{ maxWidth: "100%", height: "auto" }} // Responsive styling diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index ba9ea42b2..27cf131a0 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -23,6 +23,7 @@ import dicomParser from "dicom-parser"; import hardcodedMetaDataProvider from "./hardcodedMetaDataProvider"; import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider"; import registerWebImageLoader from "./webImageLoader"; +import { IFileBlob } from "../../../../api/model"; //@ts-ignore window.cornerstone = cornerstone; @@ -98,10 +99,11 @@ export const cleanupCornerstoneTooling = () => { export function setUpTooling(uniqueToolId: string) { // Check if tool group already exists const id = toolGroup?.id; + if (!id) { // Tool group doesn't exist, create a new one + registerToolingOnce(); toolGroup = ToolGroupManager.createToolGroup(uniqueToolId); - if (toolGroup) { toolGroup.addTool(WindowLevelTool.toolName); toolGroup.addTool(PanTool.toolName); From 8c922cb8341663124ff05790481f660dceb80bcb Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Mon, 7 Oct 2024 21:06:29 -0400 Subject: [PATCH 282/337] feat: cine player for a dicom display --- .../Preview/displays/DcmDisplay.tsx | 187 +++++++++++++++--- 1 file changed, 159 insertions(+), 28 deletions(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 80814dc9a..09933afbb 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -13,6 +13,7 @@ import { events, } from "./dicomUtils/utils"; import type { IStackViewport } from "./dicomUtils/utils"; +import { Button } from "@patternfly/react-core"; export type DcmImageProps = { selectedFile: IFileBlob; @@ -41,12 +42,16 @@ const DcmDisplay = (props: DcmImageProps) => { filesLoading, } = props; + // State variables const [currentImageIndex, setCurrentImageIndex] = useState(0); const [imageStack, setImageStack] = useState<ImageStackType>({}); - const [multiFrameDisplay, setMultiframeDisplay] = useState(false); + const [multiFrameDisplay, setMultiFrameDisplay] = useState(false); const [isLoadingMore, setIsLoadingMore] = useState(false); const [lastLoadedIndex, setLastLoadedIndex] = useState(0); + const [isPlaying, setIsPlaying] = useState(false); + const [playbackSpeed, setPlaybackSpeed] = useState(24); // frames per second + // Refs const dicomImageRef = useRef<HTMLDivElement>(null); const elementRef = useRef<HTMLDivElement>(null); const renderingEngineRef = useRef<RenderingEngine | null>(null); @@ -54,12 +59,16 @@ const DcmDisplay = (props: DcmImageProps) => { const cacheRef = useRef<{ [key: string]: ImageStackType }>({ [CACHE_KEY]: {}, }); + const cineIntervalIdRef = useRef<NodeJS.Timeout | null>(null); + // Derived values const size = useSize(dicomImageRef); const cacheStack = cacheRef.current[CACHE_KEY]; const fname = selectedFile.data.fname; - // Handle resizing of the DICOM image viewer + /** + * Handle resizing of the DICOM image viewer when the container size changes. + */ const handleResize = useCallback(() => { if (dicomImageRef.current && size && elementRef.current) { const { width, height } = size; @@ -70,6 +79,7 @@ const DcmDisplay = (props: DcmImageProps) => { } }, [size]); + // Set up resize event listener useEffect(() => { window.addEventListener("resize", handleResize); handleResize(); // Initial resize @@ -78,7 +88,9 @@ const DcmDisplay = (props: DcmImageProps) => { }; }, [handleResize]); - // Initialize Cornerstone + /** + * Initialize Cornerstone library and set up tooling. + */ useEffect(() => { const setupCornerstone = async () => { await basicInit(); @@ -87,20 +99,27 @@ const DcmDisplay = (props: DcmImageProps) => { setupCornerstone(); }, []); - // Filter the list to include only DICOM files + /** + * Filter the file list to include only DICOM files. + */ const filteredList = useMemo( () => list?.filter((file) => getFileExtension(file.data.fname) === "dcm") || [], [list], ); - // Preview the selected DICOM file + /** + * Preview the selected DICOM file. + * If the image is already cached, it uses the cached data. + * Otherwise, it loads the image and caches it. + */ const previewFile = useCallback(async () => { if (!elementRef.current) return {}; const existingImageEntry = cacheStack?.[fname]; if (existingImageEntry && activeViewportRef.current) { + // Image is already cached let imageIDs: string[]; let index: number; @@ -108,12 +127,12 @@ const DcmDisplay = (props: DcmImageProps) => { // Multi-frame image imageIDs = existingImageEntry; index = currentImageIndex; - setMultiframeDisplay(true); + setMultiFrameDisplay(true); } else { // Single-frame images imageIDs = Object.values(cacheStack).flat() as string[]; index = imageIDs.findIndex((id) => id === existingImageEntry); - setMultiframeDisplay(false); + setMultiFrameDisplay(false); } await activeViewportRef.current.setStack( @@ -146,7 +165,7 @@ const DcmDisplay = (props: DcmImageProps) => { elementId, ); - setMultiframeDisplay(framesCount > 1); + setMultiFrameDisplay(framesCount > 1); activeViewportRef.current = viewport; renderingEngineRef.current = renderingEngine; @@ -155,13 +174,27 @@ const DcmDisplay = (props: DcmImageProps) => { return newImageStack; }, [selectedFile, cacheStack, fname, currentImageIndex]); + // Use React Query to fetch and cache the preview data const { isLoading, data } = useQuery({ queryKey: ["cornerstone-preview", fname], queryFn: previewFile, enabled: !!selectedFile && !!elementRef.current, }); - // Clean up when the component unmounts + /** + * Stop cine playback. + */ + const stopCinePlay = useCallback(() => { + if (cineIntervalIdRef.current) { + clearInterval(cineIntervalIdRef.current); + cineIntervalIdRef.current = null; + } + }, []); + + /** + * Clean up when the component unmounts. + * Destroys the rendering engine and clears caches and intervals. + */ useEffect(() => { return () => { renderingEngineRef.current?.destroy(); @@ -175,10 +208,13 @@ const DcmDisplay = (props: DcmImageProps) => { handleImageRendered, ); } + stopCinePlay(); }; - }, []); + }, [stopCinePlay]); - // Load multi-frame images + /** + * Load multi-frame images into the viewport. + */ const loadMultiFrames = useCallback(async () => { if (activeViewportRef.current) { const currentIndex = activeViewportRef.current.getCurrentImageIdIndex(); @@ -188,17 +224,23 @@ const DcmDisplay = (props: DcmImageProps) => { } }, [imageStack, fname]); - // Generator for loading image files + /** + * Generator function to yield image files starting from a specific index. + */ function* imageFileGenerator(list: IFileBlob[], startIndex: number) { for (let i = startIndex; i < list.length; i++) { yield list[i]; } } - // Load more images when needed + /** + * Load more images when needed. + * This function loads additional images into the cache and updates the viewport. + */ const loadMoreImages = useCallback( async (filteredList: IFileBlob[]) => { if (Object.keys(cacheStack).length === filteredList.length) { + // All images are already loaded setImageStack(cacheStack); if (activeViewportRef.current) { const currentIndex = @@ -214,18 +256,15 @@ const DcmDisplay = (props: DcmImageProps) => { const generator = imageFileGenerator(filteredList, lastLoadedIndex); const newImages: ImageStackType = {}; - let next = generator.next(); - while (!next.done) { + for (let next = generator.next(); !next.done; next = generator.next()) { const file = next.value; if (cacheStack[file.data.fname]) { - next = generator.next(); - continue; + continue; // Skip if already in cache } const blob = await file.getFileBlob(); const imageData = await loadDicomImage(blob); newImages[file.data.fname] = imageData.imageID; - next = generator.next(); } const updatedImageStack = { ...cacheStack, ...newImages }; @@ -245,9 +284,13 @@ const DcmDisplay = (props: DcmImageProps) => { [cacheStack, lastLoadedIndex], ); + // Check if the first frame is still loading const loadingFirstFrame = isLoading || !data; - // Load more images when scrolling near the end + /** + * Load more images when scrolling near the end. + * Also handles loading multi-frame images. + */ useEffect(() => { if ( !loadingFirstFrame && @@ -274,7 +317,10 @@ const DcmDisplay = (props: DcmImageProps) => { selectedFile, ]); - // Handle image rendering event + /** + * Handle image rendered event. + * Updates the current image index and triggers pagination if needed. + */ const handleImageRendered = useCallback(() => { if (activeViewportRef.current) { const newIndex = activeViewportRef.current.getCurrentImageIdIndex(); @@ -302,7 +348,7 @@ const DcmDisplay = (props: DcmImageProps) => { handlePagination, ]); - // Add event listener for image rendering + // Add event listener for image rendered event useEffect(() => { if (elementRef.current) { elementRef.current.addEventListener( @@ -320,9 +366,58 @@ const DcmDisplay = (props: DcmImageProps) => { }; }, [handleImageRendered]); - const imageCount = multiFrameDisplay - ? (imageStack[fname] as string[]).length - : Object.values(imageStack).flat().length; + /** + * Calculate the total number of images. + */ + const imageCount = useMemo(() => { + return multiFrameDisplay + ? (imageStack[fname] as string[]).length + : Object.values(imageStack).flat().length; + }, [multiFrameDisplay, imageStack, fname]); + + const totalDigits = imageCount.toString().length; + const currentIndexDisplay = (currentImageIndex + 1) + .toString() + .padStart(totalDigits, "0"); + const imageCountDisplay = imageCount.toString().padStart(totalDigits, "0"); + + /** + * Start cine playback. + */ + const startCinePlay = useCallback(() => { + if ( + cineIntervalIdRef.current || + !activeViewportRef.current || + !imageStack[fname] + ) + return; + + const frameDuration = 1000 / playbackSpeed; // Calculate frame duration in milliseconds + + cineIntervalIdRef.current = setInterval(() => { + if (activeViewportRef.current) { + let currentIndex = activeViewportRef.current.getCurrentImageIdIndex(); + const totalImages = imageCount; + currentIndex = (currentIndex + 1) % totalImages; + activeViewportRef.current.setImageIdIndex(currentIndex); + setCurrentImageIndex(currentIndex); + } + }, frameDuration); + }, [playbackSpeed, imageStack, fname, imageCount]); + + /** + * Manage cine playback based on `isPlaying` state. + */ + useEffect(() => { + if (isPlaying) { + startCinePlay(); + } else { + stopCinePlay(); + } + return () => { + stopCinePlay(); + }; + }, [isPlaying, startCinePlay, stopCinePlay]); return ( <> @@ -332,19 +427,54 @@ const DcmDisplay = (props: DcmImageProps) => { ref={dicomImageRef} className={preview === "large" ? "dcm-preview" : ""} > + {/* Overlay Controls */} <div style={{ position: "absolute", top: "0.25em", right: "0.25em", zIndex: 99999, + width: "200px", // Set a fixed width }} > - <div style={{ color: "#fff" }}> - {`Current Index: ${currentImageIndex + 1} (${ - currentImageIndex + 1 - }/${imageCount})`} + {/* Current Index Display */} + <div + style={{ + color: "#fff", + marginBottom: "0.5em", + fontFamily: "monospace", // Use monospaced font + }} + > + {`Current Index: ${currentIndexDisplay}/${imageCountDisplay}`} </div> + + {/* Play/Pause Button */} + <div style={{ marginBottom: "0.5em" }}> + <Button + variant="control" + size="sm" + onClick={() => setIsPlaying(!isPlaying)} + > + {isPlaying ? "Pause" : "Play"} + </Button> + </div> + + {/* Playback Speed Control */} + <div style={{ color: "#fff", marginBottom: "0.5em" }}> + <label> + Speed: + <input + type="number" + value={playbackSpeed} + min="1" + max="60" + onChange={(e) => setPlaybackSpeed(Number(e.target.value))} + /> + fps + </label> + </div> + + {/* Loading More Indicator */} {isLoadingMore && ( <div style={{ color: "#fff" }}> <i>Loading more...</i> @@ -352,6 +482,7 @@ const DcmDisplay = (props: DcmImageProps) => { )} </div> + {/* DICOM Image Display */} <div id={`cornerstone-element-${fname}`} ref={elementRef} From 5e1705eff9dd990995929999c54ff8f76f78b9ad Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 8 Oct 2024 11:37:01 -0400 Subject: [PATCH 283/337] fix: Fix the regression in the 3D rendering of the Feed Graph --- src/components/FeedTree/FeedGraph.tsx | 82 +++++++++++++-------------- 1 file changed, 39 insertions(+), 43 deletions(-) diff --git a/src/components/FeedTree/FeedGraph.tsx b/src/components/FeedTree/FeedGraph.tsx index 5839a0252..b6c590d63 100644 --- a/src/components/FeedTree/FeedGraph.tsx +++ b/src/components/FeedTree/FeedGraph.tsx @@ -6,7 +6,7 @@ import ForceGraph2D, { type ForceGraphMethods, type NodeObject, } from "react-force-graph-2d"; -import { connect, useDispatch } from "react-redux"; +import { connect } from "react-redux"; import { TreeModel } from "../../api/model"; import { setFeedLayout } from "../../store/feed/feedSlice"; import { useAppSelector } from "../../store/hooks"; @@ -14,6 +14,7 @@ import type { PluginInstancePayload } from "../../store/pluginInstance/types"; import type { ApplicationState } from "../../store/root/applicationState"; import { type FeedTreeScaleType, NodeScaleDropdown } from "./Controls"; import "./FeedTree.css"; +import { useAppDispatch } from "../../store/hooks"; import useSize from "./useSize"; interface IFeedProps { @@ -114,50 +115,45 @@ const FeedGraph = (props: IFeedProps) => { /> </div> </div> - <> - <ForceGraph2D - height={size.height || 500} - width={size.width || 500} - ref={fgRef} - graphData={graphData} - //@ts-ignore - dagMode={controls["DAG Orientation"]} - dagLevelDistance={50} - backgroundColor="#101020" - linkColor={() => "rgba(255,255,255,0.2)"} - nodeVal={ - nodeScale.enabled - ? (node: any) => { - if (nodeScale.type === "time") { - const instanceData = (node.item as PluginInstance).data; - const start = new Date(instanceData?.start_date); - const end = new Date(instanceData?.end_date); - return Math.log10(end.getTime() - start.getTime()) * 10; - } - return 1; + <ForceGraph2D + height={size.height || 500} + width={size.width || 500} + ref={fgRef} + graphData={graphData} + //@ts-ignore + dagMode={controls["DAG Orientation"]} + dagLevelDistance={50} + backgroundColor="#101020" + linkColor={() => "rgba(255,255,255,0.2)"} + nodeVal={ + nodeScale.enabled + ? (node: any) => { + if (nodeScale.type === "time") { + const instanceData = (node.item as PluginInstance).data; + const start = new Date(instanceData?.start_date); + const end = new Date(instanceData?.end_date); + return Math.log10(end.getTime() - start.getTime()) * 10; } - : undefined + return 1; + } + : undefined + } + onNodeClick={handleNodeClick} + nodeLabel={(d: any) => { + return `${d.item.data.title || d.item.data.plugin_name}`; + }} + nodeAutoColorBy={(d: any) => { + if (selectedPlugin && d.item.data.id === selectedPlugin.data.id) { + return "#fff"; } - onNodeClick={handleNodeClick} - nodeLabel={(d: any) => { - return `${d.item.data.title || d.item.data.plugin_name}`; - }} - nodeAutoColorBy={(d: any) => { - if ( - selectedPlugin && - d.item.data.id === selectedPlugin.data.id - ) { - return "#fff"; - } - return d.group; - }} - linkDirectionalParticles={2} - linkDirectionalParticleWidth={2} - d3VelocityDecay={0.3} - linkWidth={2} - nodeRelSize={8} - /> - </> + return d.group; + }} + linkDirectionalParticles={2} + linkDirectionalParticleWidth={2} + d3VelocityDecay={0.3} + linkWidth={2} + nodeRelSize={8} + /> </ErrorBoundary> ) : ( <Text>Fetching the Graph....</Text> From aa2c3cbc3fbb9b9df3bd89a4fb89d91ec95a1849 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 8 Oct 2024 18:33:37 -0400 Subject: [PATCH 284/337] feat: Cleanup --- src/components/Dashboard/index.tsx | 52 +------------------ src/components/DisplayPage/display-page.css | 4 +- src/components/DisplayPage/index.tsx | 18 ++++--- .../FeedOutputBrowser/FeedOutputBrowser.tsx | 2 +- .../NewLibrary/components/LibraryTable.tsx | 1 - src/components/NewLibrary/index.tsx | 7 ++- src/components/PipelinesCopy/index.tsx | 1 - .../Preview/displays/dicomUtils/utils.ts | 1 - 8 files changed, 21 insertions(+), 65 deletions(-) diff --git a/src/components/Dashboard/index.tsx b/src/components/Dashboard/index.tsx index c2405164e..cb84bb8bc 100644 --- a/src/components/Dashboard/index.tsx +++ b/src/components/Dashboard/index.tsx @@ -18,9 +18,7 @@ const DashboardPage = () => { <> Retrieve, analyze, and visualize <i>any data</i> using a powerful cloud computing platform: ChRIS. <b>Let's get started.</b> - <p> - Build: <code className="build-version">{BUILD_VERSION}</code> - </p> + <p></p> </> } /> @@ -28,53 +26,7 @@ const DashboardPage = () => { return ( <WrapperConnect titleComponent={TitleComponent}> - <PageSection> - <Grid hasGutter> - <GridItem lg={4}> - <CatalogTile - id="simple-title" - featured - title="You've got data" - description={ - 'Visit the "Library" in the main navigation to review your data collection' - } - />{" "} - </GridItem> - - <GridItem lg={4}> - <CatalogTile - id="simple-title" - featured - title="Analyses" - description={ - 'Visit "New and Existing Analyses" in the main navigation to review your data analyses' - } - /> - </GridItem> - - <GridItem lg={4}> - <CatalogTile - id="simple-title" - featured - title="Discover and collect new data" - description={ - 'Visit "PACS Query/Retrieve" in the main navigation to pull medical data and save it your library' - } - /> - </GridItem> - - <GridItem lg={4}> - <CatalogTile - id="simple-title" - featured - title="Run a Workflow" - description={ - 'Visit "Run a Quick Workflow" to choose from existing analysis templates that allow for detailed analysis' - } - /> - </GridItem> - </Grid> - </PageSection> + <PageSection></PageSection> </WrapperConnect> ); }; diff --git a/src/components/DisplayPage/display-page.css b/src/components/DisplayPage/display-page.css index 7b61075d0..c42a0ebf0 100644 --- a/src/components/DisplayPage/display-page.css +++ b/src/components/DisplayPage/display-page.css @@ -49,8 +49,8 @@ text-decoration: none; } -.plugin-item-title, -.compute-item-description { +.plugin-item-title + { font-size: 1em; font-weight: 400; } diff --git a/src/components/DisplayPage/index.tsx b/src/components/DisplayPage/index.tsx index 862ea2374..d962c7fce 100644 --- a/src/components/DisplayPage/index.tsx +++ b/src/components/DisplayPage/index.tsx @@ -198,18 +198,20 @@ const DisplayPage = ({ )} {isCompute && ( - <h1 className="compute-item-description"> + <h1 className="plugin-item-name"> {resource.data.description} </h1> )} - <p - style={{ - fontSize: "0.90rem", - }} - > - Version: {resource.data.version} - </p> + {resource.data.version && ( + <p + style={{ + fontSize: "0.90rem", + }} + > + Version: {resource.data.version} + </p> + )} <p style={{ diff --git a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx index b7e7fda0b..e53ff1819 100644 --- a/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx +++ b/src/components/FeedOutputBrowser/FeedOutputBrowser.tsx @@ -50,7 +50,7 @@ const FeedOutputBrowser: React.FC<FeedOutputBrowserProps> = () => { ) : isError ? ( <Alert type="error" description={error?.message} /> ) : ( - <EmptyStateLoader title="Files are not available yet..." /> + <EmptyStateLoader title="" /> )} </div> ); diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 14271c1c5..f5822eccc 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -309,7 +309,6 @@ const LibraryTable: React.FC<TableProps> = ({ isStriped={true} isStickyHeader={true} > - <Caption>Data Library</Caption> <Thead> <Tr> <Th screenReaderText="Select a row" arial-label="Select a row" /> diff --git a/src/components/NewLibrary/index.tsx b/src/components/NewLibrary/index.tsx index d2a1c7976..7b601d187 100644 --- a/src/components/NewLibrary/index.tsx +++ b/src/components/NewLibrary/index.tsx @@ -11,6 +11,7 @@ import { useLocation, useNavigate } from "react-router"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useAppSelector } from "../../store/hooks"; import { Alert } from "../Antd"; +import { notification } from "../Antd"; import { EmptyStateComponent, SpinContainer } from "../Common"; import { InfoSection } from "../Common"; import WrapperConnect from "../Wrapper"; @@ -20,7 +21,6 @@ import { FolderCard } from "./components/FolderCard"; import LibraryTable from "./components/LibraryTable"; import Operations from "./components/Operations"; import { OperationContext } from "./context"; -import { notification } from "../Antd"; // Fetch folders from the server export async function fetchFolders(computedPath: string, pageNumber?: number) { @@ -220,6 +220,11 @@ const NewLibrary = () => { }} computedPath={computedPath} folderList={data?.folderList} + customStyle={{ + toolbar: { + paddingBottom: "0", + }, + }} /> <BreadcrumbContainer path={computedPath} diff --git a/src/components/PipelinesCopy/index.tsx b/src/components/PipelinesCopy/index.tsx index 902da0943..debc8d237 100644 --- a/src/components/PipelinesCopy/index.tsx +++ b/src/components/PipelinesCopy/index.tsx @@ -49,7 +49,6 @@ const PipelinesCopy = () => { const [dropdownValue, setDropdownValue] = useState<string>( PIPELINEQueryTypes.NAME[0], ); - const isStaff = useAppSelector((state) => state.user.isStaff); const { data, isLoading, isError, error } = useQuery({ queryKey: ["pipelines", perPage, page, search, dropdownValue], diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index 27cf131a0..e6bfe86b3 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -23,7 +23,6 @@ import dicomParser from "dicom-parser"; import hardcodedMetaDataProvider from "./hardcodedMetaDataProvider"; import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider"; import registerWebImageLoader from "./webImageLoader"; -import { IFileBlob } from "../../../../api/model"; //@ts-ignore window.cornerstone = cornerstone; From 67339e922e947c610db8ef5346267c1c689150af Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 8 Oct 2024 22:36:05 -0400 Subject: [PATCH 285/337] feat: Update the Overview Page --- README.md | 16 +- src/api/model.ts | 2 +- src/components/Dashboard/FeedGraph.tsx | 82 ++++++ src/components/Dashboard/dashboard.css | 45 +++- src/components/Dashboard/index.tsx | 121 ++++++++- src/components/Dashboard/util.ts | 340 +++++++++++++++++++++++++ src/components/FeedTree/FeedGraph.tsx | 141 +++++----- 7 files changed, 654 insertions(+), 93 deletions(-) create mode 100644 src/components/Dashboard/FeedGraph.tsx create mode 100644 src/components/Dashboard/util.ts diff --git a/README.md b/README.md index 4b8179621..a17848e25 100644 --- a/README.md +++ b/README.md @@ -16,8 +16,8 @@ This repository contains the reference UI for ChRIS, allowing users to create an ```shell git clone https://github.com/FNNDSC/ChRIS_ui.git cd ChRIS_ui -npm ci -npm run dev:public +pnpm install +pnpm run dev:public ``` ## Development @@ -64,7 +64,7 @@ You need Node version 20 or 21. ```shell git clone https://github.com/FNNDSC/ChRIS_ui.git cd ChRIS_ui -npm ci +pnpm install ``` #### Local Development Dependencies @@ -79,13 +79,13 @@ to run the backend and helper scripts. Either using the "public" server: ```shell -npm run dev:public +pnpm run dev:public ``` Or, start a local backend and run the "local" server: ```shell -npm run dev:local +pnpm run dev:local ``` ## Container Image @@ -117,7 +117,7 @@ Unit tests are defined in `*.test.ts` files inside `src`. It is recommended to leave this command running while developing _ChRIS_ui_. ```shell -npm test +pnpm test ``` ### End-to-End Tests @@ -128,9 +128,9 @@ The end-to-end testing framework, Playwright, requires some system dependencies. On first run, you will be prompted to install these dependencies. ```shell -npm run test:e2e # run tests using "public" backend +pnpm run test:e2e # run tests using "public" backend -npm run test:e2e:local # run tests using "local" backend +pnpm run test:e2e:local # run tests using "local" backend ``` For more information, consult the wiki: diff --git a/src/api/model.ts b/src/api/model.ts index 733330e76..5d70f576d 100644 --- a/src/api/model.ts +++ b/src/api/model.ts @@ -65,7 +65,7 @@ export class TreeModel { parseFeedTreeData(items: PluginInstance[], rootNodeId?: NodeId): ITreeChart { // Note: Reverse the array to expedite parsing also for demo purposes - this._workingItems = items.reverse().slice(); + this._workingItems = items; this._parseRootNode(items, rootNodeId); this._parseTreeChildren(this._workingItems, this._workingId); diff --git a/src/components/Dashboard/FeedGraph.tsx b/src/components/Dashboard/FeedGraph.tsx new file mode 100644 index 000000000..fd475376e --- /dev/null +++ b/src/components/Dashboard/FeedGraph.tsx @@ -0,0 +1,82 @@ +// src/components/FeedGraph.tsx + +import React from "react"; +import ForceGraph2D, { type ForceGraphMethods } from "react-force-graph-2d"; +import useSize from "../FeedTree/useSize"; + +const FeedGraph = ({ graphData }: any) => { + const graphRef = React.useRef<HTMLDivElement | null>(null); + const fgRef = React.useRef<ForceGraphMethods | undefined>(); + const size = useSize(graphRef); + const [controls] = React.useState({ "DAG Orientation": "td" }); + + // Define constants for node and label styling + const NODE_SIZE = 2; + const LABEL_FONT_SIZE = 10; // Base font size + const LABEL_COLOR = "#ffffff"; // White color for labels + const LABEL_OFFSET_Y = -10; // Y-axis offset for label positioning + + return ( + <div className="feed-tree" ref={graphRef}> + <ForceGraph2D + height={size?.height || 300} + width={size?.width || 300} + ref={fgRef} + graphData={graphData} + //@ts-ignore + dagMode={controls["DAG Orientation"]} + dagLevelDistance={20} + backgroundColor="#101020" + linkColor={() => "rgba(255,255,255,0.2)"} + nodeAutoColorBy={(d: any) => d.group} + linkDirectionalParticles={2} + linkDirectionalParticleWidth={2} + d3VelocityDecay={1} + linkWidth={1} + nodeRelSize={NODE_SIZE} + // Remove nodeLabel as labels will be drawn on the canvas + // nodeLabel={(d: any) => `${d.item.data.title || d.item.data.plugin_name}`} + // Custom node rendering to include labels + nodeCanvasObject={( + node: any, + ctx: CanvasRenderingContext2D, + globalScale: number, + ) => { + const label = node.item.data.title || node.item.data.plugin_name; + + // Calculate font size based on zoom level + const fontSize = LABEL_FONT_SIZE / globalScale; + ctx.font = `${fontSize}px Sans-Serif`; + ctx.fillStyle = LABEL_COLOR; + ctx.textAlign = "center"; + ctx.textBaseline = "middle"; + + // Draw node as a circle + ctx.beginPath(); + ctx.arc(node.x, node.y, NODE_SIZE, 0, 2 * Math.PI, false); + ctx.fillStyle = node.color || "#ffffff"; // Default to white if no color + ctx.fill(); + + // Draw label above the node + ctx.fillText(label, node.x, node.y + LABEL_OFFSET_Y); + }} + // Optional: Improve node interactivity by expanding the pointer area + nodePointerAreaPaint={( + node: any, + color: string, + ctx: CanvasRenderingContext2D, + ) => { + const label = node.item.data.title || node.item.data.plugin_name; + const fontSize = LABEL_FONT_SIZE / 2; + ctx.font = `${fontSize}px Sans-Serif`; + ctx.fillStyle = color; + ctx.textAlign = "center"; + ctx.textBaseline = "middle"; + ctx.fillText(label, node.x, node.y + LABEL_OFFSET_Y); + }} + /> + </div> + ); +}; + +export default FeedGraph; diff --git a/src/components/Dashboard/dashboard.css b/src/components/Dashboard/dashboard.css index 056f03e98..37afe650b 100644 --- a/src/components/Dashboard/dashboard.css +++ b/src/components/Dashboard/dashboard.css @@ -2,18 +2,41 @@ color: white; } -@media screen and (min-width: pf-global--breakpoint--sm) and ( - max-width: pf-global--breakpoint--md - ) { - .dashboard-carddisplay img:nth-last-of-type(-n + 2) { - display: none; - } + +.description-section { + border-radius: 8px; + height: 100%; +} + +.uniform-card-height { + height: 450px; /* Set a consistent height for both cards */ + display: flex; + flex-direction: column; + justify-content: space-between; +} + +.description-section h2 { + color: #007bff; /* Blue accent */ + margin-bottom: 10px; +} + +.description-section p { + font-size: 16px; + text-align: justify; +} + +.tree-section { + width: 100%; + flex-grow: 1; /* Allow the graph to fill the remaining space */ + border: 1px solid #dddddd; + border-radius: 8px; + overflow: hidden; /* Hide overflow */ + position: relative; } -@media screen and (min-width: pf-global--breakpoint--xs) and ( - max-width: pf-global--breakpoint--sm - ) { - .dashboard-carddisplay img:nth-last-of-type(-n + 3) { - display: none; +/* Optional: Responsive adjustments */ +@media (max-width: 768px) { + .tree-section { + height: 400px; } } diff --git a/src/components/Dashboard/index.tsx b/src/components/Dashboard/index.tsx index cb84bb8bc..8b5e0d639 100644 --- a/src/components/Dashboard/index.tsx +++ b/src/components/Dashboard/index.tsx @@ -1,13 +1,22 @@ -import { CatalogTile } from "@patternfly/react-catalog-view-extension"; -import { Grid, GridItem, PageSection } from "@patternfly/react-core"; -import React from "react"; +// src/components/DashboardPage.tsx + +import { PageSection } from "@patternfly/react-core"; +import { Button, Card, Col, Row } from "antd"; +import type React from "react"; import BUILD_VERSION from "../../getBuildVersion"; +import { useEffect } from "react"; import { InfoSection } from "../Common"; import WrapperConnect from "../Wrapper"; +import FeedGraph from "./FeedGraph"; import "./dashboard.css"; +import { + covidnetDataset, + fetalBrainReconstructionDataset, + lldDataset, +} from "./util"; -const DashboardPage = () => { - React.useEffect(() => { +const DashboardPage: React.FC = () => { + useEffect(() => { document.title = "Overview"; }, []); @@ -18,7 +27,9 @@ const DashboardPage = () => { <> Retrieve, analyze, and visualize <i>any data</i> using a powerful cloud computing platform: ChRIS. <b>Let's get started.</b> - <p></p> + <p> + Build: <code className="build-version">{BUILD_VERSION}</code> + </p> </> } /> @@ -26,7 +37,103 @@ const DashboardPage = () => { return ( <WrapperConnect titleComponent={TitleComponent}> - <PageSection></PageSection> + <PageSection> + <Row gutter={[16, 16]}> + {/* Showcase Card: Leg Length Discrepancy Workflow */} + <Col xs={24}> + <Card + title="Leg Length Discrepancy Workflow" + bordered={false} + style={{ width: "100%" }} + > + <Row gutter={[16, 16]}> + {/* Description */} + <Col xs={24} md={12}> + <div className="description-section"> + <p> + The Leg Length Discrepancy (LLD) analysis is one of the + most frequently used workflows in ChRIS. This process + transforms leg X-rays from DICOM files into new DICOM + files containing detailed measurements of the tibia and + femur for both legs. + </p> + </div> + </Col> + + {/* Graph */} + <Col xs={24} md={12}> + <div className="tree-section"> + <FeedGraph graphData={lldDataset} /> + </div> + </Col> + </Row> + </Card> + </Col> + </Row> + + {/* Row for the bottom two cards */} + <Row gutter={[16, 16]}> + {/* COVIDnet Workflow Card */} + <Col xs={24} md={12}> + <Card + title="COVIDnet Workflow" + bordered={false} + className="uniform-card-height" /* Ensure both cards have the same height */ + style={{ width: "100%", padding: "10px" }} + > + <Row gutter={[16, 16]}> + {/* Graph */} + <Col xs={24}> + <div className="tree-section"> + <FeedGraph graphData={covidnetDataset} /> + </div> + </Col> + + {/* Read More Button */} + <Col xs={24}> + <Button + type="primary" + target="_blank" + href="https://github.com/FNNDSC/pl-covidnet?tab=readme-ov-file" + > + Read More + </Button> + </Col> + </Row> + </Card> + </Col> + + {/* Automatic Fetal Brain Reconstruction Pipeline Card */} + <Col xs={24} md={12}> + <Card + title="Automatic Fetal Brain Reconstruction Pipeline" + bordered={false} + className="uniform-card-height" /* Ensure both cards have the same height */ + style={{ width: "100%", padding: "10px" }} + > + <Row gutter={[16, 16]}> + {/* Graph */} + <Col xs={24}> + <div className="tree-section"> + <FeedGraph graphData={fetalBrainReconstructionDataset} /> + </div> + </Col> + + {/* Read More Button */} + <Col xs={24}> + <Button + type="primary" + target="_blank" + href="https://github.com/FNNDSC/Fetal_Brain_MRI_Reconstruction_Pipeline" + > + Read More + </Button> + </Col> + </Row> + </Card> + </Col> + </Row> + </PageSection> </WrapperConnect> ); }; diff --git a/src/components/Dashboard/util.ts b/src/components/Dashboard/util.ts new file mode 100644 index 000000000..f23c713b7 --- /dev/null +++ b/src/components/Dashboard/util.ts @@ -0,0 +1,340 @@ +// COVIDnet Dataset +export const covidnetDataset = { + nodes: [ + { + id: "root", + group: 1, + item: { + data: { + title: "Root Node", + }, + }, + }, + { + id: "Convert Original DICOM to JPG", + group: 2, + item: { + data: { + title: "Convert Original DICOM to JPG", + }, + }, + }, + { + id: "Combine PDF and DCM", + group: 3, + item: { + data: { + title: "Combine PDF and DCM", + }, + }, + }, + { + id: "COVIDnet classification", + group: 4, + item: { + data: { + title: "COVIDnet Classification", + }, + }, + }, + { + id: "Unstack folders", + group: 5, + item: { + data: { + title: "Unstack Folders", + }, + }, + }, + { + id: "Generate PDF report", + group: 6, + item: { + data: { + title: "Generate PDF Report", + }, + }, + }, + ], + links: [ + { source: "root", target: "Convert Original DICOM to JPG", value: 5 }, + { source: "root", target: "Combine PDF and DCM", value: 3 }, + { source: "Combine PDF and DCM", target: "Unstack folders", value: 4 }, + { + source: "Convert Original DICOM to JPG", + target: "COVIDnet classification", + value: 6, + }, + { + source: "COVIDnet classification", + target: "Generate PDF report", + value: 7, + }, + { source: "Generate PDF report", target: "Combine PDF and DCM", value: 2 }, + ], +}; + +// Leg Length Discrepancy (LLD) Dataset +export const lldDataset = { + nodes: [ + { + id: "root-0", + group: 1, + item: { + data: { + title: "root-0", + plugin_name: "pl-simpledsapp", + plugin_version: "2.1.0", + }, + }, + }, + { + id: "dcm-to-mha-1", + group: 2, + item: { + data: { + title: "dcm-to-mha-1", + plugin_name: "pl-dcm2mha_cnvtr", + plugin_version: "1.2.22", + }, + }, + }, + { + id: "heatmaps-join-root-3", + group: 3, + item: { + data: { + title: "heatmaps-join-root-3", + plugin_name: "pl-topologicalcopy", + plugin_version: "0.2.6", + }, + }, + }, + { + id: "generate-landmark-heatmaps-2", + group: 4, + item: { + data: { + title: "generate-landmark-heatmaps-2", + plugin_name: "pl-lld_inference", + plugin_version: "2.2.10", + }, + }, + }, + { + id: "landmarks-to-json-4", + group: 5, + item: { + data: { + title: "landmarks-to-json-4", + plugin_name: "pl-csv2json", + plugin_version: "1.2.2", + }, + }, + }, + { + id: "measurement-join-dicom-7", + group: 6, + item: { + data: { + title: "measurement-join-dicom-7", + plugin_name: "pl-topologicalcopy", + plugin_version: "0.2.6", + }, + }, + }, + { + id: "heatmaps-join-json-5", + group: 7, + item: { + data: { + title: "heatmaps-join-json-5", + plugin_name: "pl-topologicalcopy", + plugin_version: "0.2.6", + }, + }, + }, + { + id: "measure-leg-segments-6", + group: 8, + item: { + data: { + title: "measure-leg-segments-6", + plugin_name: "pl-markimg", + plugin_version: "1.2.30", + }, + }, + }, + { + id: "image-to-DICOM-8", + group: 9, + item: { + data: { + title: "image-to-DICOM-8", + plugin_name: "pl-dicommake", + plugin_version: "2.2.2", + }, + }, + }, + { + id: "pacs-push-9", + group: 10, + item: { + data: { + title: "pacs-push-9", + plugin_name: "pl-orthanc_push", + plugin_version: "1.2.2", + }, + }, + }, + ], + links: [ + { source: "root-0", target: "dcm-to-mha-1", value: 1 }, + { source: "root-0", target: "heatmaps-join-root-3", value: 1 }, + { + source: "dcm-to-mha-1", + target: "generate-landmark-heatmaps-2", + value: 1, + }, + { source: "heatmaps-join-root-3", target: "landmarks-to-json-4", value: 1 }, + { + source: "heatmaps-join-root-3", + target: "measurement-join-dicom-7", + value: 1, + }, + { source: "landmarks-to-json-4", target: "heatmaps-join-json-5", value: 1 }, + { + source: "heatmaps-join-json-5", + target: "measure-leg-segments-6", + value: 1, + }, + { source: "measure-leg-segments-6", target: "image-to-DICOM-8", value: 1 }, + { source: "image-to-DICOM-8", target: "pacs-push-9", value: 1 }, + ], +}; + +// Fetal Brain Reconstruction Dataset +export const fetalBrainReconstructionDataset = { + nodes: [ + { + id: "unstack-folders", + group: 1, + item: { + data: { + title: "Unstack folders", + plugin: "pl-unstack-folders v1.0.0", + }, + }, + }, + { + id: "convert-dicom-to-nifti", + group: 2, + item: { + data: { + title: "Convert DICOM to NIFTI", + plugin: "pl-dcm2niix v1.0.0", + }, + }, + }, + { + id: "brain-mask", + group: 3, + item: { + data: { + title: "Brain Mask", + plugin: "pl-emerald v0.2.2", + }, + }, + }, + { + id: "select-brain-extraction", + group: 4, + item: { + data: { + title: "Select brain extraction", + plugin: "pl-bulk-rename v0.1.2", + }, + }, + }, + { + id: "n4-bias-field-correction", + group: 5, + item: { + data: { + title: "N4 Bias Field Correction", + plugin: "pl-n4biasfieldcorrection v2.5.0.1", + }, + }, + }, + { + id: "automatic-fetal-brain-assessment", + group: 6, + item: { + data: { + title: "Automatic Fetal Brain Assessment", + plugin: "pl-fetal-brain-assessment v1.3.1", + }, + }, + }, + { + id: "reconstruction", + group: 7, + item: { + data: { + title: "Reconstruction", + plugin: "pl-NeSVoR-reconstruct v0.5.0", + }, + }, + }, + { + id: "brain-extraction-preview-figures", + group: 8, + item: { + data: { + title: "Brain extraction preview figures", + plugin: "pl-mri-preview v1.2.2", + }, + }, + }, + { + id: "brain-reconstruction-preview-figures", + group: 9, + item: { + data: { + title: "Brain reconstruction preview figures", + plugin: "pl-mri-preview v1.2.2", + }, + }, + }, + ], + links: [ + { source: "unstack-folders", target: "convert-dicom-to-nifti", value: 1 }, + { source: "convert-dicom-to-nifti", target: "brain-mask", value: 1 }, + { source: "brain-mask", target: "select-brain-extraction", value: 1 }, + { + source: "select-brain-extraction", + target: "n4-bias-field-correction", + value: 1, + }, + { + source: "n4-bias-field-correction", + target: "automatic-fetal-brain-assessment", + value: 1, + }, + { + source: "automatic-fetal-brain-assessment", + target: "reconstruction", + value: 1, + }, + { + source: "brain-mask", + target: "brain-extraction-preview-figures", + value: 1, + }, + { + source: "reconstruction", + target: "brain-reconstruction-preview-figures", + value: 1, + }, + ], +}; diff --git a/src/components/FeedTree/FeedGraph.tsx b/src/components/FeedTree/FeedGraph.tsx index b6c590d63..3d0aea32a 100644 --- a/src/components/FeedTree/FeedGraph.tsx +++ b/src/components/FeedTree/FeedGraph.tsx @@ -6,30 +6,35 @@ import ForceGraph2D, { type ForceGraphMethods, type NodeObject, } from "react-force-graph-2d"; -import { connect } from "react-redux"; import { TreeModel } from "../../api/model"; import { setFeedLayout } from "../../store/feed/feedSlice"; -import { useAppSelector } from "../../store/hooks"; -import type { PluginInstancePayload } from "../../store/pluginInstance/types"; -import type { ApplicationState } from "../../store/root/applicationState"; +import { useAppSelector, useAppDispatch } from "../../store/hooks"; import { type FeedTreeScaleType, NodeScaleDropdown } from "./Controls"; import "./FeedTree.css"; -import { useAppDispatch } from "../../store/hooks"; import useSize from "./useSize"; +import { SpinContainer } from "../Common"; interface IFeedProps { - pluginInstances: PluginInstancePayload; - selectedPlugin?: PluginInstance; onNodeClick: (node: PluginInstance) => void; } -const FeedGraph = (props: IFeedProps) => { +interface GraphData { + nodes: NodeObject[]; + links: { source: string; target: string }[]; +} + +const FeedGraph: React.FC<IFeedProps> = ({ onNodeClick }) => { const dispatch = useAppDispatch(); const currentLayout = useAppSelector((state) => state.feed.currentLayout); - const { pluginInstances, selectedPlugin, onNodeClick } = props; - const { data: instances } = pluginInstances; + const pluginInstances = useAppSelector( + (state) => state.instance.pluginInstances, + ); + const selectedPlugin = useAppSelector( + (state) => state.instance.selectedPlugin, + ); + const { data: instances, loading } = pluginInstances; const graphRef = React.useRef<HTMLDivElement | null>(null); - const fgRef = React.useRef<ForceGraphMethods | undefined>(); + const fgRef = React.useRef<ForceGraphMethods>(); const [nodeScale, setNodeScale] = React.useState<{ enabled: boolean; @@ -38,12 +43,19 @@ const FeedGraph = (props: IFeedProps) => { const size = useSize(graphRef); - const [graphData, setGraphData] = React.useState(); + const [graphData, setGraphData] = React.useState<GraphData | undefined>( + undefined, + ); const [controls] = React.useState({ "DAG Orientation": "td" }); const handleNodeClick = (node: NodeObject) => { const distance = 40; - if (node?.x && node.y && node.z && fgRef.current) { + if ( + node.x !== undefined && + node.y !== undefined && + node.z !== undefined && + fgRef.current + ) { const distRatio = 1 + distance / Math.hypot(node.x, node.y, node.z); //@ts-ignore fgRef.current.cameraPosition( @@ -52,20 +64,19 @@ const FeedGraph = (props: IFeedProps) => { y: node.y * distRatio, z: node.z * distRatio, }, // new position - //@ts-ignore node, // lookAt ({ x, y, z }) 3000, // ms transition duration ); } - //@ts-ignore - onNodeClick(node.item); + if (node.item && typeof node.item === "object") { + onNodeClick(node.item as PluginInstance); + } }; React.useEffect(() => { if (instances && instances.length > 0) { const tree = new TreeModel(instances); - //@ts-ignore setGraphData(tree.treeChart); } @@ -90,7 +101,10 @@ const FeedGraph = (props: IFeedProps) => { labelOff="Scale Nodes Off" isChecked={nodeScale.enabled} onChange={() => - setNodeScale({ ...nodeScale, enabled: !nodeScale.enabled }) + setNodeScale({ + ...nodeScale, + enabled: !nodeScale.enabled, + }) } /> @@ -115,58 +129,53 @@ const FeedGraph = (props: IFeedProps) => { /> </div> </div> - <ForceGraph2D - height={size.height || 500} - width={size.width || 500} - ref={fgRef} - graphData={graphData} - //@ts-ignore - dagMode={controls["DAG Orientation"]} - dagLevelDistance={50} - backgroundColor="#101020" - linkColor={() => "rgba(255,255,255,0.2)"} - nodeVal={ - nodeScale.enabled - ? (node: any) => { - if (nodeScale.type === "time") { - const instanceData = (node.item as PluginInstance).data; - const start = new Date(instanceData?.start_date); - const end = new Date(instanceData?.end_date); - return Math.log10(end.getTime() - start.getTime()) * 10; + {loading ? ( + <SpinContainer title="Fetching data.." /> + ) : ( + <ForceGraph2D + height={size.height || 500} + width={size.width || 500} + ref={fgRef} + graphData={graphData} + //@ts-ignore + dagMode={controls["DAG Orientation"] as "td" | "lr" | "rl" | "bt"} // Adjust the type as needed + dagLevelDistance={50} + backgroundColor="#101020" + linkColor={() => "rgba(255,255,255,0.2)"} + nodeVal={ + nodeScale.enabled + ? (node: NodeObject) => { + if (nodeScale.type === "time") { + const instanceData = (node.item as PluginInstance).data; + const start = new Date(instanceData?.start_date); + const end = new Date(instanceData?.end_date); + return Math.log10(end.getTime() - start.getTime()) * 10; + } + return 1; } - return 1; - } - : undefined - } - onNodeClick={handleNodeClick} - nodeLabel={(d: any) => { - return `${d.item.data.title || d.item.data.plugin_name}`; - }} - nodeAutoColorBy={(d: any) => { - if (selectedPlugin && d.item.data.id === selectedPlugin.data.id) { - return "#fff"; + : undefined + } + onNodeClick={handleNodeClick} + nodeLabel={(d: NodeObject) => + `${(d.item as PluginInstance).data.title || (d.item as PluginInstance).data.plugin_name}` + } + nodeAutoColorBy={(d: NodeObject) => + selectedPlugin && + (d.item as PluginInstance).data.id === selectedPlugin.data.id + ? "#fff" + : (d.group as string) } - return d.group; - }} - linkDirectionalParticles={2} - linkDirectionalParticleWidth={2} - d3VelocityDecay={0.3} - linkWidth={2} - nodeRelSize={8} - /> + linkDirectionalParticles={2} + linkDirectionalParticleWidth={2} + d3VelocityDecay={0.3} + linkWidth={2} + nodeRelSize={8} + /> + )} </ErrorBoundary> - ) : ( - <Text>Fetching the Graph....</Text> - )} + ) : null} </div> ); }; -const mapStateToProps = (state: ApplicationState) => ({ - pluginInstances: state.instance.pluginInstances, - selectedPlugin: state.instance.selectedPlugin, -}); - -const FeedGraphConnect = connect(mapStateToProps, {})(FeedGraph); - -export default FeedGraphConnect; +export default FeedGraph; From 39904af131aab6daa0a6592ec7485448eeb6fa3c Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 8 Oct 2024 22:38:10 -0400 Subject: [PATCH 286/337] fix: Fix Typo --- src/components/Dashboard/index.tsx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/components/Dashboard/index.tsx b/src/components/Dashboard/index.tsx index 8b5e0d639..231f70a0b 100644 --- a/src/components/Dashboard/index.tsx +++ b/src/components/Dashboard/index.tsx @@ -106,7 +106,7 @@ const DashboardPage: React.FC = () => { {/* Automatic Fetal Brain Reconstruction Pipeline Card */} <Col xs={24} md={12}> <Card - title="Automatic Fetal Brain Reconstruction Pipeline" + title="Automatic Fetal Brain Reconstruction Workflow" bordered={false} className="uniform-card-height" /* Ensure both cards have the same height */ style={{ width: "100%", padding: "10px" }} From 884c1c07b62473bb75ce4867b6cd61f4391c98e8 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 8 Oct 2024 23:08:09 -0400 Subject: [PATCH 287/337] feat: Update image display --- .../Preview/displays/ImageDisplay.tsx | 89 ++++++++++++------- 1 file changed, 59 insertions(+), 30 deletions(-) diff --git a/src/components/Preview/displays/ImageDisplay.tsx b/src/components/Preview/displays/ImageDisplay.tsx index e095fd369..16d5370fb 100644 --- a/src/components/Preview/displays/ImageDisplay.tsx +++ b/src/components/Preview/displays/ImageDisplay.tsx @@ -1,5 +1,6 @@ -import React, { useEffect, useState } from "react"; +import React, { useEffect, useState, useRef } from "react"; import { getFileExtension, type IFileBlob } from "../../../api/model"; +import useSize from "../../FeedTree/useSize"; type AllProps = { selectedFile?: IFileBlob; @@ -7,49 +8,77 @@ type AllProps = { const ImageDisplay: React.FunctionComponent<AllProps> = ({ selectedFile }) => { const [url, setUrl] = useState<string>(""); + const containerRef = useRef<HTMLDivElement | null>(null); + const size = useSize(containerRef); // Get the dimensions of the container useEffect(() => { + let objectUrl: string | null = null; + async function constructUrl() { - if (!selectedFile) return; - - // Get the Blob if the file doesn't have a URL - const blob = await selectedFile?.getFileBlob(); - if (blob) { - let type = ""; - const fileType = getFileExtension(selectedFile.data.fname); - if (fileType === "png") { - type = "image/png"; - } - if (fileType === "jpg") { - type = "image/jpg"; + if (!selectedFile) { + setUrl(""); + return; + } + + try { + // Get the Blob if the file doesn't have a URL + const blob = await selectedFile.getFileBlob(); + if (blob) { + let type = ""; + const fileType = getFileExtension( + selectedFile.data.fname, + ).toLowerCase(); + if (fileType === "png") { + type = "image/png"; + } else if (fileType === "jpg" || fileType === "jpeg") { + type = "image/jpeg"; + } else { + // Handle unsupported file types if necessary + console.warn(`Unsupported file type: ${fileType}`); + return; + } + + // Create a Blob URL with the correct MIME type for images + objectUrl = window.URL.createObjectURL(new Blob([blob], { type })); + setUrl(objectUrl); } - // Create a Blob URL with the correct MIME type for images - const objectUrl = window.URL.createObjectURL( - new Blob([blob], { type }), - ); - setUrl(objectUrl); - // Cleanup the object URL to avoid memory leaks - return () => { - URL.revokeObjectURL(objectUrl); - }; + } catch (error) { + console.error("Error constructing image URL:", error); } } constructUrl(); + + // Cleanup the object URL to avoid memory leaks + return () => { + if (objectUrl) { + URL.revokeObjectURL(objectUrl); + } + }; }, [selectedFile]); // Don't render if the URL isn't ready if (!url) return null; + // Calculate image dimensions based on container size + const imageStyles: React.CSSProperties = { + width: size ? `${size.width}px` : "100%", + height: "auto", + objectFit: "scale-down", // Adjust as needed (e.g., 'cover', 'fill') + transition: "width 0.2s, height 0.2s", // Smooth resizing + }; + return ( - <img - id={selectedFile?.data.fname || ""} - src={url} - alt={selectedFile?.data.fname} - onClick={(e) => e.preventDefault()} // Prevent default behavior on click - onKeyDown={(e) => e.preventDefault()} - style={{ maxWidth: "100%", height: "auto" }} // Responsive styling - /> + <div ref={containerRef} style={{ width: "100%", height: "100%" }}> + <img + id={selectedFile?.data.fname || ""} + src={url} + alt={selectedFile?.data.fname} + onClick={(e) => e.preventDefault()} // Prevent default behavior on click + onKeyDown={(e) => e.preventDefault()} + style={imageStyles} // Apply dynamic styles + /> + </div> ); }; From a9165e4bffeb7ed1a19cd41e87524562bcd6f2ea Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 8 Oct 2024 23:10:33 -0400 Subject: [PATCH 288/337] refactor: cleanup --- src/components/Preview/displays/ImageDisplay.tsx | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/components/Preview/displays/ImageDisplay.tsx b/src/components/Preview/displays/ImageDisplay.tsx index 16d5370fb..1a1a82743 100644 --- a/src/components/Preview/displays/ImageDisplay.tsx +++ b/src/components/Preview/displays/ImageDisplay.tsx @@ -33,6 +33,7 @@ const ImageDisplay: React.FunctionComponent<AllProps> = ({ selectedFile }) => { } else if (fileType === "jpg" || fileType === "jpeg") { type = "image/jpeg"; } else { + // use antd notifications here // Handle unsupported file types if necessary console.warn(`Unsupported file type: ${fileType}`); return; @@ -64,8 +65,8 @@ const ImageDisplay: React.FunctionComponent<AllProps> = ({ selectedFile }) => { const imageStyles: React.CSSProperties = { width: size ? `${size.width}px` : "100%", height: "auto", - objectFit: "scale-down", // Adjust as needed (e.g., 'cover', 'fill') - transition: "width 0.2s, height 0.2s", // Smooth resizing + objectFit: "scale-down", + transition: "width 0.2s, height 0.2s", }; return ( From 37f08390794c35bd02cd1256d609c4a53977bd32 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Tue, 8 Oct 2024 23:50:03 -0400 Subject: [PATCH 289/337] Hacky workaround for double firing of pull request --- src/components/Pacs/PacsController.tsx | 13 ++++++++++++- 1 file changed, 12 insertions(+), 1 deletion(-) diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index 705858005..f4ec534d2 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -495,6 +495,8 @@ const PacsController: React.FC<PacsControllerProps> = ({ const onRetrieve = React.useCallback( (service: string, query: PACSqueryCore) => { expandStudiesFor(service, query); + // N.B.: immer bug here + // https://github.com/immerjs/use-immer/issues/139 setPullRequests((draft) => { // indicate that the user requests for something to be retrieved. draft.push({ @@ -594,10 +596,19 @@ const PacsController: React.FC<PacsControllerProps> = ({ updatePullRequestState(service, query, { state: RequestState.REQUESTED }), }); + // FIXME idk why the effect is firing twice... + const badWorkaroundToPreventDuplicatePull = React.useRef< + Set<PacsPullRequestState> + >(new Set()); + React.useEffect(() => { pullRequests .filter(shouldSendPullRequest) - .forEach((pr) => pullFromPacs.mutate(pr)); + .filter((pr) => !badWorkaroundToPreventDuplicatePull.current.has(pr)) + .forEach((pr) => { + badWorkaroundToPreventDuplicatePull.current.add(pr); + pullFromPacs.mutate(pr); + }); }, [pullRequests, shouldSendPullRequest]); // ======================================== From 08e52803dfee98424fb2505d4f7a9c0323591d00 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 10:32:32 -0400 Subject: [PATCH 290/337] Revert "Hacky workaround for double firing of pull request" This reverts commit 37f08390794c35bd02cd1256d609c4a53977bd32. --- src/components/Pacs/PacsController.tsx | 13 +------------ 1 file changed, 1 insertion(+), 12 deletions(-) diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index f4ec534d2..705858005 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -495,8 +495,6 @@ const PacsController: React.FC<PacsControllerProps> = ({ const onRetrieve = React.useCallback( (service: string, query: PACSqueryCore) => { expandStudiesFor(service, query); - // N.B.: immer bug here - // https://github.com/immerjs/use-immer/issues/139 setPullRequests((draft) => { // indicate that the user requests for something to be retrieved. draft.push({ @@ -596,19 +594,10 @@ const PacsController: React.FC<PacsControllerProps> = ({ updatePullRequestState(service, query, { state: RequestState.REQUESTED }), }); - // FIXME idk why the effect is firing twice... - const badWorkaroundToPreventDuplicatePull = React.useRef< - Set<PacsPullRequestState> - >(new Set()); - React.useEffect(() => { pullRequests .filter(shouldSendPullRequest) - .filter((pr) => !badWorkaroundToPreventDuplicatePull.current.has(pr)) - .forEach((pr) => { - badWorkaroundToPreventDuplicatePull.current.add(pr); - pullFromPacs.mutate(pr); - }); + .forEach((pr) => pullFromPacs.mutate(pr)); }, [pullRequests, shouldSendPullRequest]); // ======================================== From ef2cc3adc6d715c755f0ef32aa13ec6befe31bbe Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 10:48:29 -0400 Subject: [PATCH 291/337] Small changes --- src/components/Pacs/PacsController.tsx | 18 ++++++++---------- 1 file changed, 8 insertions(+), 10 deletions(-) diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index 705858005..9794b6d27 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -528,7 +528,7 @@ const PacsController: React.FC<PacsControllerProps> = ({ ); /** - * All series states. + * All DICOM series states. */ const allSeries = React.useMemo( () => (studies ?? []).flatMap((s) => s.series), @@ -558,21 +558,19 @@ const PacsController: React.FC<PacsControllerProps> = ({ if (pullRequest.state !== RequestState.NOT_REQUESTED) { return false; } - if ( - pullRequest.query.studyInstanceUID && - !("seriesInstanceUID" in pullRequest.query) - ) { - return shouldPullStudy( - pullRequest.service, - pullRequest.query.studyInstanceUID, - ); - } if (pullRequest.query.seriesInstanceUID) { return shouldPullSeries( pullRequest.service, pullRequest.query.seriesInstanceUID, ); } + if (pullRequest.query.studyInstanceUID) { + return shouldPullStudy( + pullRequest.service, + pullRequest.query.studyInstanceUID, + ); + } + return false; }, [shouldPullStudy, shouldPullSeries], From e174158bc68d19139731362b5a2a06cdb9778d7b Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 12:17:56 -0400 Subject: [PATCH 292/337] pnpm run fmt --- src/components/Feeds/Feeds.css | 11 ++--------- 1 file changed, 2 insertions(+), 9 deletions(-) diff --git a/src/components/Feeds/Feeds.css b/src/components/Feeds/Feeds.css index 3eec65139..aabfcb178 100644 --- a/src/components/Feeds/Feeds.css +++ b/src/components/Feeds/Feeds.css @@ -42,20 +42,16 @@ vertical-align: middle !important; } - - .custom-panel { background-color: var(--pf-v5-c-page__main-section--BackgroundColor); border-right: 1px solid var(--pf-global--BorderColor--dark); } - - /* Common styles for both handles */ .ResizeHandle, .ResizeHandleVertical, .ResizeHandleCollapsed { - background-color:#4F5255; /* Default background color */ + background-color: #4f5255; /* Default background color */ transition: background-color 250ms linear; } @@ -80,7 +76,7 @@ .ResizeHandleVertical[data-resize-handle-active], .ResizeHandleCollapsed:hover, .ResizeHandleCollapsed[data-resize-handle-active] { - background-color:#8A8D90 ; /* PatternFly blue */ + background-color: #8a8d90; /* PatternFly blue */ } /* Adjust for touch devices */ @@ -92,6 +88,3 @@ height: 1rem; } } - - - From 8e169bca7930d79b44012f6f9a246cb1da1dd70e Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 12:30:03 -0400 Subject: [PATCH 293/337] Change type of pullRequests from ReadonlyArray to PullRequestStates --- src/components/Pacs/PacsController.tsx | 84 ++++++++++---------------- src/components/Pacs/mergeStates.ts | 31 +++++----- src/components/Pacs/types.ts | 19 +++++- 3 files changed, 64 insertions(+), 70 deletions(-) diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index 9794b6d27..0005efe5a 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -18,16 +18,18 @@ import { useQueries, useQuery, } from "@tanstack/react-query"; -import { mergeStates, createCubeSeriesQueryUidMap } from "./mergeStates.ts"; +import { createCubeSeriesQueryUidMap, mergeStates } from "./mergeStates.ts"; import { DEFAULT_RECEIVE_STATE, IPacsState, PacsPullRequestState, + PullRequestStates, ReceiveState, RequestState, SeriesNotRegisteredError, SeriesPullState, SeriesReceiveState, + SpecificDicomQuery, StudyKey, } from "./types.ts"; import { DEFAULT_PREFERENCES } from "./defaultPreferences.ts"; @@ -125,37 +127,24 @@ const PacsController: React.FC<PacsControllerProps> = ({ /** * List of PACS queries which the user wants to pull. */ - const [pullRequests, setPullRequests] = useImmer< - ReadonlyArray<PacsPullRequestState> - >([]); + const [pullRequests, setPullRequests] = useImmer<PullRequestStates>( + new Map(), + ); /** * Update the state of a pull request. */ const updatePullRequestState = React.useCallback( - ( - service: string, - query: PACSqueryCore, - delta: Partial<Omit<PacsPullRequestState, "service" | "query">>, - ) => + (query: SpecificDicomQuery, delta: Partial<PacsPullRequestState>) => setPullRequests((draft) => { - const i = draft.findLastIndex( - (pr) => - pr.service === service && - (pr.query.studyInstanceUID - ? pr.query.studyInstanceUID === query.studyInstanceUID - : true) && - (pr.query.seriesInstanceUID - ? pr.query.seriesInstanceUID === query.seriesInstanceUID - : true), - ); - if (i === -1) { + const prev = draft.get(query); + if (!prev) { throw new Error( "pullFromPacs mutation called on unknown pull request: " + `service=${service}, query=${JSON.stringify(query)}`, ); } - draft[i] = { ...draft[i], ...delta }; + draft.set(query, { ...prev, ...delta }); }), [setPullRequests], ); @@ -496,12 +485,9 @@ const PacsController: React.FC<PacsControllerProps> = ({ (service: string, query: PACSqueryCore) => { expandStudiesFor(service, query); setPullRequests((draft) => { + const key = { service, query }; // indicate that the user requests for something to be retrieved. - draft.push({ - state: RequestState.NOT_REQUESTED, - query, - service, - }); + draft.set(key, { state: RequestState.NOT_REQUESTED }); }); }, [setPullRequests, expandStudiesFor], @@ -554,23 +540,20 @@ const PacsController: React.FC<PacsControllerProps> = ({ * may be for either a DICOM study or series). */ const shouldSendPullRequest = React.useCallback( - (pullRequest: PacsPullRequestState): boolean => { - if (pullRequest.state !== RequestState.NOT_REQUESTED) { + ({ + service, + query, + state, + }: SpecificDicomQuery & Pick<PacsPullRequestState, "state">): boolean => { + if (state !== RequestState.NOT_REQUESTED) { return false; } - if (pullRequest.query.seriesInstanceUID) { - return shouldPullSeries( - pullRequest.service, - pullRequest.query.seriesInstanceUID, - ); + if (query.seriesInstanceUID) { + return shouldPullSeries(service, query.seriesInstanceUID); } - if (pullRequest.query.studyInstanceUID) { - return shouldPullStudy( - pullRequest.service, - pullRequest.query.studyInstanceUID, - ); + if (query.studyInstanceUID) { + return shouldPullStudy(service, query.studyInstanceUID); } - return false; }, [shouldPullStudy, shouldPullSeries], @@ -580,22 +563,21 @@ const PacsController: React.FC<PacsControllerProps> = ({ * Send request to PFDCM to pull from PACS. */ const pullFromPacs = useMutation({ - mutationFn: ({ service, query }: PacsPullRequestState) => + mutationFn: ({ service, query }: SpecificDicomQuery) => pfdcmClient.retrieve(service, query), - onMutate: ({ service, query }: PacsPullRequestState) => - updatePullRequestState(service, query, { - state: RequestState.REQUESTING, - }), - onError: (error, { service, query }) => - updatePullRequestState(service, query, { error: error }), - onSuccess: (_, { service, query }) => - updatePullRequestState(service, query, { state: RequestState.REQUESTED }), + onMutate: (query: SpecificDicomQuery) => + updatePullRequestState(query, { state: RequestState.REQUESTING }), + onError: (error, query) => updatePullRequestState(query, { error: error }), + onSuccess: (_, query) => + updatePullRequestState(query, { state: RequestState.REQUESTED }), }); React.useEffect(() => { - pullRequests - .filter(shouldSendPullRequest) - .forEach((pr) => pullFromPacs.mutate(pr)); + [...pullRequests.entries()] + .filter(([query, { state }]) => + shouldSendPullRequest({ ...query, state }), + ) + .forEach(([query, _]) => pullFromPacs.mutate(query)); }, [pullRequests, shouldSendPullRequest]); // ======================================== diff --git a/src/components/Pacs/mergeStates.ts b/src/components/Pacs/mergeStates.ts index ddfbef958..237faa4db 100644 --- a/src/components/Pacs/mergeStates.ts +++ b/src/components/Pacs/mergeStates.ts @@ -1,13 +1,14 @@ import { DEFAULT_RECEIVE_STATE, - PacsPullRequestState, PacsStudyState, + PullRequestStates, ReceiveState, RequestState, SeriesKey, SeriesNotRegisteredError, SeriesPullState, SeriesReceiveState, + SpecificDicomQuery, } from "./types.ts"; import { Series, StudyAndSeries } from "../../api/pfdcm/models.ts"; import { useQuery, UseQueryResult } from "@tanstack/react-query"; @@ -28,13 +29,13 @@ type UseQueryResultLike = Partial< * @param cubeQueryMap mapping of `SeriesInstanceUID` to queries for respective * {@link PACSSeries} in CUBE (hint: call * {@link createCubeSeriesQueryUidMap}) - * @param receiveState state of DICOM receive operation conveyed via LONK + * @param receiveStates state of DICOM receive operation conveyed via LONK */ function mergeStates( pfdcm: ReadonlyArray<StudyAndSeries>, - pullRequests: ReadonlyArray<PacsPullRequestState>, + pullRequests: PullRequestStates, cubeQueryMap: Map<string, UseQueryResult<PACSSeries | null, Error>>, - receiveState: ReceiveState, + receiveStates: ReceiveState, ): PacsStudyState[] { return pfdcm.map(({ study, series }) => { return { @@ -43,21 +44,19 @@ function mergeStates( const cubeQueryResult = cubeQueryMap.get(info.SeriesInstanceUID); const cubeError = cubeQueryResult?.error; const cubeErrors = cubeError ? [cubeError.message] : []; - const state = - receiveState.get(info.RetrieveAETitle, info.SeriesInstanceUID) ?? + const rxState = + receiveStates.get(info.RetrieveAETitle, info.SeriesInstanceUID) ?? DEFAULT_RECEIVE_STATE; - const pullRequestsForSeries = pullRequests.findLast((pr) => - isRequestFor(pr, info), + const prEntry = [...pullRequests.entries()].find(([query]) => + isRequestFor(query, info), ); + const prState = prEntry?.[1].state; + return { info, - receivedCount: state.receivedCount, - errors: state.errors.concat(cubeErrors), - pullState: pullStateOf( - state, - pullRequestsForSeries?.state, - cubeQueryResult, - ), + receivedCount: rxState.receivedCount, + errors: rxState.errors.concat(cubeErrors), + pullState: pullStateOf(rxState, prState, cubeQueryResult), inCube: cubeQueryResult?.data || null, }; }), @@ -103,7 +102,7 @@ function isNotRegisteredError(q: UseQueryResultLike): boolean { * @returns `true` if the query matches the series. */ function isRequestFor( - { query, service }: PacsPullRequestState, + { query, service }: SpecificDicomQuery, series: Series, ): boolean { if (service !== series.RetrieveAETitle) { diff --git a/src/components/Pacs/types.ts b/src/components/Pacs/types.ts index 64d54b6c8..b21c9be80 100644 --- a/src/components/Pacs/types.ts +++ b/src/components/Pacs/types.ts @@ -62,15 +62,26 @@ enum RequestState { } /** - * The state of a PACS pull request. + * A {@link PACSqueryCore} for a specified PACS. + */ +type SpecificDicomQuery = { + service: string; + query: PACSqueryCore; +}; + +/** + * The state of a request for a {@link SpecificDicomQuery}. */ type PacsPullRequestState = { state: RequestState; error?: Error; - query: PACSqueryCore; - service: string; }; +/** + * The state of requests to PFDCM to pull DICOM study/series. + */ +type PullRequestStates = Map<SpecificDicomQuery, PacsPullRequestState>; + /** * The state of a DICOM series retrieval. */ @@ -163,5 +174,7 @@ export type { PacsSeriesState, PacsStudyState, PacsPreferences, + SpecificDicomQuery, PacsPullRequestState, + PullRequestStates, }; From f7cf25a0b7eb2fc4f7246d89de2a9de2f57cd563 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 13:45:24 -0400 Subject: [PATCH 294/337] terribleStrictModeWorkaround --- src/components/Pacs/PacsController.tsx | 5 ++++ .../terribleStrictModeWorkaround.test.tsx | 30 +++++++++++++++++++ .../Pacs/terribleStrictModeWorkaround.ts | 21 +++++++++++++ 3 files changed, 56 insertions(+) create mode 100644 src/components/Pacs/terribleStrictModeWorkaround.test.tsx create mode 100644 src/components/Pacs/terribleStrictModeWorkaround.ts diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index 0005efe5a..aeb516735 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -44,6 +44,7 @@ import { sameStudyInstanceUidAs, } from "./curry.ts"; import { Study } from "../../api/pfdcm/models.ts"; +import terribleStrictModeWorkaround from "./terribleStrictModeWorkaround.ts"; type PacsControllerProps = { getPfdcmClient: () => PfdcmClient; @@ -572,8 +573,12 @@ const PacsController: React.FC<PacsControllerProps> = ({ updatePullRequestState(query, { state: RequestState.REQUESTED }), }); + const terribleDoNotCallTwice = + terribleStrictModeWorkaround<[SpecificDicomQuery, PacsPullRequestState]>(); + React.useEffect(() => { [...pullRequests.entries()] + .filter(terribleDoNotCallTwice) .filter(([query, { state }]) => shouldSendPullRequest({ ...query, state }), ) diff --git a/src/components/Pacs/terribleStrictModeWorkaround.test.tsx b/src/components/Pacs/terribleStrictModeWorkaround.test.tsx new file mode 100644 index 000000000..52891544c --- /dev/null +++ b/src/components/Pacs/terribleStrictModeWorkaround.test.tsx @@ -0,0 +1,30 @@ +import { test, expect, vi } from "vitest"; +import React from "react"; +import terribleStrictModeWorkaround from "./terribleStrictModeWorkaround.ts"; +import { render, screen } from "@testing-library/react"; + +type ExampleProps<T> = { + obj: T; + callback: (calledBefore: boolean) => void; +}; + +const ExampleComponent = <T,>({ obj, callback }: ExampleProps<T>) => { + const workaroundFn = terribleStrictModeWorkaround<T>(); + const [state, setState] = React.useState<ReadonlyArray<T>>([]); + React.useEffect(() => { + state.forEach((s) => callback(workaroundFn(s))); + }, [state]); + return <button onClick={() => setState([obj])}>click me</button>; +}; + +test("terribleStrictModeWorkaround", async () => { + const callback = vi.fn(); + render(<ExampleComponent obj={{}} callback={callback} />); + expect(callback).not.toHaveBeenCalled(); + screen.getByText("click me").click(); + await expect.poll(() => callback).toHaveBeenCalledOnce(); + expect(callback).toHaveBeenLastCalledWith(true); + screen.getByText("click me").click(); + await expect.poll(() => callback).toHaveBeenCalledTimes(2); + expect(callback).toHaveBeenLastCalledWith(false); +}); diff --git a/src/components/Pacs/terribleStrictModeWorkaround.ts b/src/components/Pacs/terribleStrictModeWorkaround.ts new file mode 100644 index 000000000..4f43f74d3 --- /dev/null +++ b/src/components/Pacs/terribleStrictModeWorkaround.ts @@ -0,0 +1,21 @@ +import React from "react"; + +/** + * A wrapper around {@link React.useRef} to detect when something is called + * more than once. Useful as a workaround to how {@link React.StrictMode} + * makes effects run twice. + * + * @returns an impure predicate, returning `true` the first time `x` is given, + * and `false` for every subsequent call on the same `x`. + */ +export default function terribleStrictModeWorkaround<T>(): (x: T) => boolean { + const set = React.useRef(new Set()); + return React.useCallback( + (x) => { + const has = set.current.has(x); + set.current.add(x); + return !has; + }, + [set.current], + ); +} From 5e8505e2ba1a185bedd39695930f05912bd24604 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 14:49:31 -0400 Subject: [PATCH 295/337] Fix all lints Note: lint/complexity/noUselessFragments is disabled because of https://github.com/biomejs/biome/issues/4247 Also follow https://github.com/biomejs/biome/issues/4248 --- biome.json | 6 ++- src/components/Pacs/PacsController.tsx | 48 ++++++++++--------- src/components/Pacs/PacsView.tsx | 12 ++--- .../Pacs/components/ErrorScreen.tsx | 4 +- src/components/Pacs/components/PacsInput.tsx | 4 +- .../Pacs/components/PacsStudiesView.tsx | 12 ++--- src/components/Pacs/components/SeriesList.tsx | 9 ++-- .../Pacs/components/StudyButtons.tsx | 4 +- src/components/Pacs/components/StudyCard.tsx | 8 ++-- .../Pacs/components/StudyDetails.tsx | 4 +- .../Pacs/components/helpers.test.ts | 2 +- src/components/Pacs/components/helpers.ts | 6 +-- src/components/Pacs/curry.ts | 4 +- src/components/Pacs/defaultPreferences.ts | 2 +- src/components/Pacs/helpers.test.ts | 7 ++- src/components/Pacs/helpers.ts | 4 +- src/components/Pacs/mergeStates.test.ts | 6 +-- src/components/Pacs/mergeStates.ts | 20 ++++---- .../terribleStrictModeWorkaround.test.tsx | 8 +++- .../Pacs/terribleStrictModeWorkaround.ts | 13 ++--- src/components/Pacs/types.ts | 14 +++--- 21 files changed, 103 insertions(+), 94 deletions(-) diff --git a/biome.json b/biome.json index c9fa1e2e0..61ad6df07 100644 --- a/biome.json +++ b/biome.json @@ -25,10 +25,12 @@ "rules": { "recommended": true, "style": { - "noNonNullAssertion": "off" + "noNonNullAssertion": "off", + "useTemplate": "off" }, "complexity": { - "noForEach": "off" + "noForEach": "off", + "noUselessFragments": "off" }, "correctness": { "useExhaustiveDependencies": "warn" diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index aeb516735..f7862bb36 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -5,8 +5,9 @@ */ import React from "react"; -import { PACSqueryCore, PfdcmClient } from "../../api/pfdcm"; -import Client, { PACSSeries } from "@fnndsc/chrisapi"; +import type { PACSqueryCore, PfdcmClient } from "../../api/pfdcm"; +import type Client from "@fnndsc/chrisapi"; +import type { PACSSeries } from "@fnndsc/chrisapi"; import { App } from "antd"; import { PageSection } from "@patternfly/react-core"; import PacsView from "./PacsView.tsx"; @@ -21,29 +22,29 @@ import { import { createCubeSeriesQueryUidMap, mergeStates } from "./mergeStates.ts"; import { DEFAULT_RECEIVE_STATE, - IPacsState, - PacsPullRequestState, - PullRequestStates, - ReceiveState, + type IPacsState, + type PacsPullRequestState, + type PullRequestStates, + type ReceiveState, RequestState, SeriesNotRegisteredError, SeriesPullState, - SeriesReceiveState, - SpecificDicomQuery, - StudyKey, + type SeriesReceiveState, + type SpecificDicomQuery, + type StudyKey, } from "./types.ts"; import { DEFAULT_PREFERENCES } from "./defaultPreferences.ts"; import { toStudyKey, zipPacsNameAndSeriesUids } from "./helpers.ts"; import { useImmer } from "use-immer"; import SeriesMap from "../../api/lonk/seriesMap.ts"; import { useLonk } from "../../api/lonk"; -import { produce, WritableDraft } from "immer"; +import { produce, type WritableDraft } from "immer"; import { isFromPacs, sameSeriesInstanceUidAs, sameStudyInstanceUidAs, } from "./curry.ts"; -import { Study } from "../../api/pfdcm/models.ts"; +import type { Study } from "../../api/pfdcm/models.ts"; import terribleStrictModeWorkaround from "./terribleStrictModeWorkaround.ts"; type PacsControllerProps = { @@ -104,7 +105,9 @@ const PacsController: React.FC<PacsControllerProps> = ({ const { message } = App.useApp(); + // biome-ignore lint/correctness/useExhaustiveDependencies: https://github.com/biomejs/biome/issues/4248 const pfdcmClient = React.useMemo(getPfdcmClient, [getPfdcmClient]); + // biome-ignore lint/correctness/useExhaustiveDependencies: https://github.com/biomejs/biome/issues/4248 const chrisClient = React.useMemo(getChrisClient, [getChrisClient]); // ======================================== @@ -315,7 +318,7 @@ const PacsController: React.FC<PacsControllerProps> = ({ retry: 300, retryDelay: 2000, // TODO use environment variable })), - [receiveState], + [receiveState, chrisClient.getPACSSeriesList], ), }); @@ -357,13 +360,7 @@ const PacsController: React.FC<PacsControllerProps> = ({ allCubeSeriesQueryMap, receiveState, ); - }, [ - mergeStates, - pfdcmStudies.data, - pullRequests, - allCubeSeriesQueryMap, - receiveState, - ]); + }, [pfdcmStudies.data, pullRequests, allCubeSeriesQueryMap, receiveState]); /** * Entire state of the Pacs Q/R application. @@ -475,7 +472,7 @@ const PacsController: React.FC<PacsControllerProps> = ({ (service: string, query: PACSqueryCore) => { setPacsQuery({ service, query }); }, - [setPacsQuery], + [], ); // ======================================== @@ -509,7 +506,7 @@ const PacsController: React.FC<PacsControllerProps> = ({ .findIndex( ({ pullState }) => pullState === SeriesPullState.NOT_CHECKED || - pullState == SeriesPullState.CHECKING, + pullState === SeriesPullState.CHECKING, ) === -1, [studies], ); @@ -583,7 +580,12 @@ const PacsController: React.FC<PacsControllerProps> = ({ shouldSendPullRequest({ ...query, state }), ) .forEach(([query, _]) => pullFromPacs.mutate(query)); - }, [pullRequests, shouldSendPullRequest]); + }, [ + pullRequests, + shouldSendPullRequest, + pullFromPacs.mutate, + terribleDoNotCallTwice, + ]); // ======================================== // EFFECTS @@ -611,7 +613,7 @@ const PacsController: React.FC<PacsControllerProps> = ({ } // Note: we are subscribing to series, but never unsubscribing. // This is mostly harmless. - }, [expandedSeries]); + }, [lonk.subscribe, expandedSeries, updateReceiveState]); // ======================================== // RENDER diff --git a/src/components/Pacs/PacsView.tsx b/src/components/Pacs/PacsView.tsx index 046f8f1c1..79b9bf78a 100644 --- a/src/components/Pacs/PacsView.tsx +++ b/src/components/Pacs/PacsView.tsx @@ -1,13 +1,13 @@ import React from "react"; -import PacsInput, { PacsInputProps } from "./components/PacsInput.tsx"; +import PacsInput, { type PacsInputProps } from "./components/PacsInput.tsx"; import PacsStudiesView, { - PacsStudiesViewProps, + type PacsStudiesViewProps, } from "./components/PacsStudiesView.tsx"; import { getDefaultPacsService } from "./components/helpers.ts"; import { useSearchParams } from "react-router-dom"; -import { PACSqueryCore } from "../../api/pfdcm"; +import type { PACSqueryCore } from "../../api/pfdcm"; import { Empty, Flex, Spin } from "antd"; -import { IPacsState } from "./types.ts"; +import type { IPacsState } from "./types.ts"; type PacsViewProps = Pick<PacsInputProps, "services" | "onSubmit"> & Pick<PacsStudiesViewProps, "expandedStudyUids"> & { @@ -49,13 +49,13 @@ const PacsView: React.FC<PacsViewProps> = ({ const curriedOnRetrieve = React.useCallback( (query: PACSqueryCore) => onRetrieve(service, query), - [onRetrieve], + [onRetrieve, service], ); const curriedOnStudyExpand = React.useCallback( (StudyInstanceUIDS: ReadonlyArray<string>) => onStudyExpand(service, StudyInstanceUIDS), - [onStudyExpand], + [onStudyExpand, service], ); return ( diff --git a/src/components/Pacs/components/ErrorScreen.tsx b/src/components/Pacs/components/ErrorScreen.tsx index c69d06171..f46929ee3 100644 --- a/src/components/Pacs/components/ErrorScreen.tsx +++ b/src/components/Pacs/components/ErrorScreen.tsx @@ -1,4 +1,4 @@ -import React from "react"; +import type React from "react"; import { EmptyState, EmptyStateBody, @@ -10,7 +10,7 @@ import { } from "@patternfly/react-core"; import { ExclamationCircleIcon } from "../../Icons"; -const ErrorScreen: React.FC<React.PropsWithChildren<{}>> = ({ children }) => ( +const ErrorScreen: React.FC<React.PropsWithChildren> = ({ children }) => ( <EmptyState> <EmptyStateHeader titleText="PACS Connection Error" diff --git a/src/components/Pacs/components/PacsInput.tsx b/src/components/Pacs/components/PacsInput.tsx index dec5be300..f1f3a1517 100644 --- a/src/components/Pacs/components/PacsInput.tsx +++ b/src/components/Pacs/components/PacsInput.tsx @@ -1,9 +1,9 @@ import React from "react"; -import { PACSqueryCore } from "../../../api/pfdcm"; +import type { PACSqueryCore } from "../../../api/pfdcm"; import { Select, Input, Row, Col, Grid, Segmented } from "antd"; import { useSearchParams } from "react-router-dom"; import { useBooleanSearchParam } from "./helpers.ts"; -import { ReadonlyNonEmptyArray } from "fp-ts/ReadonlyNonEmptyArray"; +import type { ReadonlyNonEmptyArray } from "fp-ts/ReadonlyNonEmptyArray"; type InputFieldProps = { onSubmit: (query: PACSqueryCore) => void; diff --git a/src/components/Pacs/components/PacsStudiesView.tsx b/src/components/Pacs/components/PacsStudiesView.tsx index b4ba3bace..4e7c8bc88 100644 --- a/src/components/Pacs/components/PacsStudiesView.tsx +++ b/src/components/Pacs/components/PacsStudiesView.tsx @@ -1,7 +1,7 @@ -import { PacsPreferences, PacsStudyState } from "../types.ts"; -import { PACSqueryCore } from "../../../api/pfdcm"; +import type { PacsPreferences, PacsStudyState } from "../types.ts"; +import type { PACSqueryCore } from "../../../api/pfdcm"; import StudyCard from "./StudyCard.tsx"; -import { Collapse, CollapseProps, Space, Typography } from "antd"; +import { Collapse, type CollapseProps, Space, Typography } from "antd"; import React from "react"; import SeriesList from "./SeriesList.tsx"; import { isSeriesLoading } from "./helpers.ts"; @@ -45,7 +45,7 @@ const PacsStudiesView: React.FC<PacsStudiesViewProps> = ({ studyInstanceUID: info.StudyInstanceUID, }) } - ></StudyCard> + /> ), children: ( <SeriesList @@ -61,7 +61,7 @@ const PacsStudiesView: React.FC<PacsStudiesViewProps> = ({ ), }; }); - }, [studies]); + }, [studies, onRetrieve, preferences.showUid]); const numPatients = React.useMemo(() => { return studies .map((study) => study.info.PatientID) @@ -71,7 +71,7 @@ const PacsStudiesView: React.FC<PacsStudiesViewProps> = ({ ).length; }, [studies]); const onChange = React.useCallback( - (studyUids: string[]) => onStudyExpand && onStudyExpand(studyUids), + (studyUids: string[]) => onStudyExpand?.(studyUids), [onStudyExpand], ); return ( diff --git a/src/components/Pacs/components/SeriesList.tsx b/src/components/Pacs/components/SeriesList.tsx index 61d741950..476c80c9e 100644 --- a/src/components/Pacs/components/SeriesList.tsx +++ b/src/components/Pacs/components/SeriesList.tsx @@ -1,6 +1,6 @@ import { Button, - ButtonProps, + type ButtonProps, Descriptions, Flex, Grid, @@ -9,7 +9,7 @@ import { Tooltip, Typography, } from "antd"; -import { PacsSeriesState, SeriesPullState } from "../types.ts"; +import { type PacsSeriesState, SeriesPullState } from "../types.ts"; import ModalityBadges from "./ModalityBadges.tsx"; import { ImportOutlined, WarningFilled } from "@ant-design/icons"; import styles from "./SeriesList.module.css"; @@ -89,7 +89,8 @@ const SeriesRow: React.FC<SeriesRowProps> = ({ return 99; } return ( - (99 * receivedCount) / (info.NumberOfSeriesRelatedInstances || Infinity) + (99 * receivedCount) / + (info.NumberOfSeriesRelatedInstances || Number.POSITIVE_INFINITY) ); }, [inCube, pullState, receivedCount, info.NumberOfSeriesRelatedInstances]); @@ -169,7 +170,7 @@ const SeriesList: React.FC<SeriesListProps> = ({ <List.Item> <SeriesRow showUid={showUid} - onRetrieve={() => onRetrieve && onRetrieve(s)} + onRetrieve={() => onRetrieve?.(s)} {...s} /> </List.Item> diff --git a/src/components/Pacs/components/StudyButtons.tsx b/src/components/Pacs/components/StudyButtons.tsx index 91d4500d7..03c9efda0 100644 --- a/src/components/Pacs/components/StudyButtons.tsx +++ b/src/components/Pacs/components/StudyButtons.tsx @@ -1,4 +1,4 @@ -import { Flex, Button, Tooltip, TooltipProps } from "antd"; +import { Flex, Button, Tooltip, type TooltipProps } from "antd"; import { AppstoreOutlined, ImportOutlined } from "@ant-design/icons"; type StudyButtonsProps = { @@ -41,7 +41,7 @@ const StudyButtons: React.FC<StudyButtonsProps> = ({ disabled={isPulled} onClick={(event) => { event.stopPropagation(); - onRetrieve && onRetrieve(); + onRetrieve?.(); }} > {isLoading || <ImportOutlined />} diff --git a/src/components/Pacs/components/StudyCard.tsx b/src/components/Pacs/components/StudyCard.tsx index e18fb518b..2e94afd8c 100644 --- a/src/components/Pacs/components/StudyCard.tsx +++ b/src/components/Pacs/components/StudyCard.tsx @@ -1,9 +1,9 @@ -import { Study } from "../../../api/pfdcm/models.ts"; -import React from "react"; +import type { Study } from "../../../api/pfdcm/models.ts"; +import type React from "react"; import { Row, Col } from "antd"; import StudyDetails from "./StudyDetails.tsx"; import StudyButtons from "./StudyButtons.tsx"; -import { PacsPreferences } from "../types.ts"; +import type { PacsPreferences } from "../types.ts"; import { DEFAULT_PREFERENCES } from "../defaultPreferences.ts"; type StudyCardProps = { @@ -37,7 +37,7 @@ const StudyCard: React.FC<StudyCardProps> = ({ `${ohifUrl}viewer?StudyInstanceUIDs=${study.StudyInstanceUID}` } onRetrieve={onRetrieve} - ></StudyButtons> + /> </Col> </Row> ); diff --git a/src/components/Pacs/components/StudyDetails.tsx b/src/components/Pacs/components/StudyDetails.tsx index e0dc62383..637e0d028 100644 --- a/src/components/Pacs/components/StudyDetails.tsx +++ b/src/components/Pacs/components/StudyDetails.tsx @@ -1,8 +1,8 @@ import { format } from "date-fns"; import { Descriptions } from "antd"; import ModalityBadges from "./ModalityBadges.tsx"; -import React from "react"; -import { Study } from "../../../api/pfdcm/models.ts"; +import type React from "react"; +import type { Study } from "../../../api/pfdcm/models.ts"; const StudyDetails: React.FC<{ study: Study; diff --git a/src/components/Pacs/components/helpers.test.ts b/src/components/Pacs/components/helpers.test.ts index 5d8aa91e5..7e4699370 100644 --- a/src/components/Pacs/components/helpers.test.ts +++ b/src/components/Pacs/components/helpers.test.ts @@ -1,5 +1,5 @@ import { describe, it, vi, expect } from "vitest"; -import { createSearchParams, URLSearchParamsInit } from "react-router-dom"; +import { createSearchParams, type URLSearchParamsInit } from "react-router-dom"; import { useBooleanSearchParam } from "./helpers.ts"; describe("useBooleanSearchParam", () => { diff --git a/src/components/Pacs/components/helpers.ts b/src/components/Pacs/components/helpers.ts index 898da7695..261d6fd82 100644 --- a/src/components/Pacs/components/helpers.ts +++ b/src/components/Pacs/components/helpers.ts @@ -1,9 +1,9 @@ -import { useSearchParams } from "react-router-dom"; +import type { useSearchParams } from "react-router-dom"; import { - ReadonlyNonEmptyArray, + type ReadonlyNonEmptyArray, extract as extractFromNonEmpty, } from "fp-ts/ReadonlyNonEmptyArray"; -import { PacsSeriesState, SeriesPullState } from "../types.ts"; +import { type PacsSeriesState, SeriesPullState } from "../types.ts"; /** * Adapt {@link useSearchParams} to work like `React.useState<boolean>(false)` diff --git a/src/components/Pacs/curry.ts b/src/components/Pacs/curry.ts index 2246c1ee3..26a0ce8c0 100644 --- a/src/components/Pacs/curry.ts +++ b/src/components/Pacs/curry.ts @@ -2,8 +2,8 @@ * Some trivial curried functions for making array map/filter code more legible. */ -import { Series, Study } from "../../api/pfdcm/models.ts"; -import { PACSqueryCore } from "../../api/pfdcm"; +import type { Series, Study } from "../../api/pfdcm/models.ts"; +import type { PACSqueryCore } from "../../api/pfdcm"; function isFromPacs( pacs_name: string, diff --git a/src/components/Pacs/defaultPreferences.ts b/src/components/Pacs/defaultPreferences.ts index 0af96189e..b07dc2abc 100644 --- a/src/components/Pacs/defaultPreferences.ts +++ b/src/components/Pacs/defaultPreferences.ts @@ -1,4 +1,4 @@ -import { PacsPreferences } from "./types.ts"; +import type { PacsPreferences } from "./types.ts"; const DEFAULT_PREFERENCES: PacsPreferences = { showUid: false, diff --git a/src/components/Pacs/helpers.test.ts b/src/components/Pacs/helpers.test.ts index 2728d60e8..fd175cb42 100644 --- a/src/components/Pacs/helpers.test.ts +++ b/src/components/Pacs/helpers.test.ts @@ -1,6 +1,9 @@ import { test, expect } from "vitest"; -import { StudyAndSeriesUidOnly, zipPacsNameAndSeriesUids } from "./helpers.ts"; -import { SeriesKey, StudyKey } from "./types.ts"; +import { + type StudyAndSeriesUidOnly, + zipPacsNameAndSeriesUids, +} from "./helpers.ts"; +import type { SeriesKey, StudyKey } from "./types.ts"; test.each(< [ diff --git a/src/components/Pacs/helpers.ts b/src/components/Pacs/helpers.ts index 91915f268..27b81a7d6 100644 --- a/src/components/Pacs/helpers.ts +++ b/src/components/Pacs/helpers.ts @@ -1,5 +1,5 @@ -import { SeriesKey, StudyKey } from "./types.ts"; -import { Study, StudyAndSeries } from "../../api/pfdcm/models.ts"; +import type { SeriesKey, StudyKey } from "./types.ts"; +import { type Study, StudyAndSeries } from "../../api/pfdcm/models.ts"; /** * A type subset of {@link StudyAndSeries}. diff --git a/src/components/Pacs/mergeStates.test.ts b/src/components/Pacs/mergeStates.test.ts index c07afa1a9..0928fccbd 100644 --- a/src/components/Pacs/mergeStates.test.ts +++ b/src/components/Pacs/mergeStates.test.ts @@ -2,15 +2,15 @@ import { expect, test } from "vitest"; import { createCubeSeriesQueryUidMap, pullStateOf, - UseQueryResultLike, + type UseQueryResultLike, } from "./mergeStates.ts"; import { DEFAULT_RECEIVE_STATE, RequestState, - SeriesKey, + type SeriesKey, SeriesNotRegisteredError, SeriesPullState, - SeriesReceiveState, + type SeriesReceiveState, } from "./types.ts"; test.each(< diff --git a/src/components/Pacs/mergeStates.ts b/src/components/Pacs/mergeStates.ts index 237faa4db..3307911ff 100644 --- a/src/components/Pacs/mergeStates.ts +++ b/src/components/Pacs/mergeStates.ts @@ -1,18 +1,18 @@ import { DEFAULT_RECEIVE_STATE, - PacsStudyState, - PullRequestStates, - ReceiveState, - RequestState, - SeriesKey, + type PacsStudyState, + type PullRequestStates, + type ReceiveState, + type RequestState, + type SeriesKey, SeriesNotRegisteredError, SeriesPullState, - SeriesReceiveState, - SpecificDicomQuery, + type SeriesReceiveState, + type SpecificDicomQuery, } from "./types.ts"; -import { Series, StudyAndSeries } from "../../api/pfdcm/models.ts"; -import { useQuery, UseQueryResult } from "@tanstack/react-query"; -import { PACSSeries } from "@fnndsc/chrisapi"; +import type { Series, StudyAndSeries } from "../../api/pfdcm/models.ts"; +import { useQuery, type UseQueryResult } from "@tanstack/react-query"; +import type { PACSSeries } from "@fnndsc/chrisapi"; type UseQueryResultLike = Partial< Pick<UseQueryResult, "isError" | "isPending" | "error"> diff --git a/src/components/Pacs/terribleStrictModeWorkaround.test.tsx b/src/components/Pacs/terribleStrictModeWorkaround.test.tsx index 52891544c..6ce2838b1 100644 --- a/src/components/Pacs/terribleStrictModeWorkaround.test.tsx +++ b/src/components/Pacs/terribleStrictModeWorkaround.test.tsx @@ -13,8 +13,12 @@ const ExampleComponent = <T,>({ obj, callback }: ExampleProps<T>) => { const [state, setState] = React.useState<ReadonlyArray<T>>([]); React.useEffect(() => { state.forEach((s) => callback(workaroundFn(s))); - }, [state]); - return <button onClick={() => setState([obj])}>click me</button>; + }, [state, callback, workaroundFn]); + return ( + <button type="button" onClick={() => setState([obj])}> + click me + </button> + ); }; test("terribleStrictModeWorkaround", async () => { diff --git a/src/components/Pacs/terribleStrictModeWorkaround.ts b/src/components/Pacs/terribleStrictModeWorkaround.ts index 4f43f74d3..113c4f6f0 100644 --- a/src/components/Pacs/terribleStrictModeWorkaround.ts +++ b/src/components/Pacs/terribleStrictModeWorkaround.ts @@ -10,12 +10,9 @@ import React from "react"; */ export default function terribleStrictModeWorkaround<T>(): (x: T) => boolean { const set = React.useRef(new Set()); - return React.useCallback( - (x) => { - const has = set.current.has(x); - set.current.add(x); - return !has; - }, - [set.current], - ); + return React.useCallback((x) => { + const has = set.current.has(x); + set.current.add(x); + return !has; + }, []); } diff --git a/src/components/Pacs/types.ts b/src/components/Pacs/types.ts index b21c9be80..82d2fa32d 100644 --- a/src/components/Pacs/types.ts +++ b/src/components/Pacs/types.ts @@ -1,7 +1,7 @@ -import { Series, Study } from "../../api/pfdcm/models.ts"; -import { PACSSeries } from "@fnndsc/chrisapi"; -import SeriesMap from "../../api/lonk/seriesMap.ts"; -import { PACSqueryCore } from "../../api/pfdcm"; +import type { Series, Study } from "../../api/pfdcm/models.ts"; +import type { PACSSeries } from "@fnndsc/chrisapi"; +import type SeriesMap from "../../api/lonk/seriesMap.ts"; +import type { PACSqueryCore } from "../../api/pfdcm"; type StudyKey = { pacs_name: string; @@ -56,9 +56,9 @@ enum SeriesPullState { * The states a request can be in. */ enum RequestState { - NOT_REQUESTED, - REQUESTING, - REQUESTED, + NOT_REQUESTED = 0, + REQUESTING = 1, + REQUESTED = 2, } /** From 11c4b2cfee627ad5faadd466be34ae15bfbc7cf5 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 10 Oct 2024 14:54:19 -0400 Subject: [PATCH 296/337] feat: Improve accessibility --- src/api/common.ts | 333 +++++++-------- src/api/model.ts | 167 ++++---- src/components/FeedTree/FeedGraph.tsx | 19 +- src/components/FeedTree/FeedTree.tsx | 396 +++++++++--------- src/components/FeedTree/Link.tsx | 30 +- src/components/FeedTree/Node.tsx | 19 +- src/components/Feeds/FeedListView.tsx | 23 +- .../NewLibrary/components/ContextMenu.tsx | 1 + 8 files changed, 488 insertions(+), 500 deletions(-) diff --git a/src/api/common.ts b/src/api/common.ts index 23b12c289..561dc2cd3 100644 --- a/src/api/common.ts +++ b/src/api/common.ts @@ -1,4 +1,3 @@ -import React from "react"; import axios, { type AxiosProgressEvent } from "axios"; import ChrisAPIClient from "./chrisapiclient"; import type { @@ -17,128 +16,13 @@ export function elipses(str: string, len: number) { return `${str.slice(0, len - 3)}...`; } -export function useSafeDispatch(dispatch: any) { - const mounted = React.useRef(false); - React.useLayoutEffect(() => { - mounted.current = true; - return () => { - mounted.current = false; - }; - }, []); - return React.useCallback( - (...args: any[]) => (mounted.current ? dispatch(...args) : void 0), - [dispatch], - ); -} - -const defaultInitialState = { - status: "idle", - data: null, - error: null, -}; - -function useAsync(initialState?: any) { - const initialStateRef = React.useRef({ - ...defaultInitialState, - initialState, - }); - - const [{ status, data, error }, setState] = React.useReducer( - (s: any, a: any) => ({ ...s, ...a }), - initialStateRef.current, - ); - - const safeSetState = useSafeDispatch(setState); - const setData = React.useCallback( - (data: any) => safeSetState({ data, status: "resolved" }), - [safeSetState], - ); - const setError = React.useCallback( - (error: any) => safeSetState({ error, status: "rejected" }), - [safeSetState], - ); - const reset = React.useCallback( - () => safeSetState(initialStateRef.current), - [safeSetState], - ); - - const run = React.useCallback( - (promise: any) => { - if (!promise || !promise.then) { - throw new Error( - "The argument passed to useAsync().run must be a promise", - ); - } - safeSetState({ status: "pending" }); - return promise.then( - (data: any) => { - setData(data); - return data; - }, - (error: any) => { - setError(error); - return Promise.reject(error); - }, - ); - }, - [safeSetState, setData, setError], - ); - - return { - isIdle: status === "idle", - isLoading: status === "pending", - isError: status === "rejected", - isSuccess: status === "resolved", - - setData, - setError, - error, - status, - data, - run, - reset, - }; -} - -async function fetchResource<T>( - params: { - limit: number; - offset: number; - fname_icontains?: string; - fname_nslashes?: string; - }, - fn: any, -) { - try { - let resourceList = await fn(params); - let resource: T[] = []; - if (resourceList.getItems()) { - resource = resourceList.getItems() as T[]; - } - while (resourceList.hasNextPage) { - params.offset += params.limit; - resourceList = await fn(params); - if (resourceList.getItems()) { - resource.push(...(resourceList.getItems() as T[])); - } - } - - return { - resource, - totalCount: resourceList.totalCount as number, - }; - } catch (error) { - if (error instanceof Error) { - throw new Error(error.message); - } - throw new Error( - "Unhandled error. Please reach out to @devbabymri.org to report this error", - ); - } +interface FetchParams { + limit: number; + offset: number; + fname_icontains?: string; + fname_nslashes?: string; } -export { useAsync, fetchResource }; - export interface TreeType { id: number; plugin_id: number; @@ -156,39 +40,52 @@ export interface TreeNode { plugin_version: string; } -export const getFeedTree = (items: any[]) => { - const tree = []; - const mappedArr: { [key: string]: TreeNode } = {}; +export const getFeedTree = (items: any[]): TreeNode[] => { + const tree: TreeNode[] = []; + const mappedArr = new Map<number, TreeNode>(); + const childrenMap = new Map<number, TreeNode[]>(); items.forEach((item) => { - const id = item.data.id; - if (!mappedArr[id]) { - mappedArr[id] = { - id: id, - plugin_id: item.data.plugin_id, - pipeline_id: item.data.pipeline_id, - previous_id: item.data.previous_id && item.data.previous_id, - title: item.data.title, - plugin_name: item.data.plugin_name, - plugin_version: item.data.plugin_version, - children: [], - }; - } - }); + const id: number = item.data.id; + const previous_id: number | null = + item.data.previous_id !== undefined ? item.data.previous_id : null; + + const node: TreeNode = { + id, + plugin_id: item.data.plugin_id, + pipeline_id: item.data.pipeline_id, + previous_id, + title: item.data.title, + plugin_name: item.data.plugin_name, + plugin_version: item.data.plugin_version, + children: [], + }; - for (const id in mappedArr) { - if (Object.prototype.hasOwnProperty.call(mappedArr, id)) { - const mappedElem = mappedArr[id]; - if (mappedElem.previous_id) { - const parentId = mappedElem.previous_id; - if (parentId && mappedArr[parentId] && mappedArr[parentId].children) { - mappedArr[parentId].children.push(mappedElem); - } + mappedArr.set(id, node); + + if (previous_id !== null) { + const parentNode = mappedArr.get(previous_id); + if (parentNode) { + parentNode.children.push(node); } else { - tree.push(mappedElem); + // If parent hasn't been processed yet, store the child in childrenMap + if (!childrenMap.has(previous_id)) { + childrenMap.set(previous_id, []); + } + childrenMap.get(previous_id)!.push(node); } + } else { + tree.push(node); } - } + + // If there are children waiting for this node, add them + if (childrenMap.has(id)) { + const children = childrenMap.get(id)!; + node.children.push(...children); + childrenMap.delete(id); + } + }); + return tree; }; @@ -223,39 +120,94 @@ export const fetchPipelines = async ( } }; -export async function fetchResources(pipelineInstance: Pipeline) { - const params = { - limit: 100, - offset: 0, - }; +interface ResourceList<T> { + getItems(): T[] | null; + hasNextPage: boolean; + totalCount: number; +} - const pipelinePluginsFn = pipelineInstance.getPlugins; - const pipelineFn = pipelineInstance.getPluginPipings; - const boundPipelinePluginFn = pipelinePluginsFn.bind(pipelineInstance); - const boundPipelineFn = pipelineFn.bind(pipelineInstance); - const { resource: pluginPipings } = await fetchResource<PluginPiping>( - params, - boundPipelineFn, - ); +interface FetchResourceResult<T> { + resource: T[]; + totalCount: number; +} + +type FetchFunction<T> = (params: FetchParams) => Promise<ResourceList<T>>; +export const fetchResource = async <T>( + params: FetchParams, + fn: FetchFunction<T>, +): Promise<FetchResourceResult<T>> => { try { - const { resource: pipelinePlugins }: { resource: Plugin[] } = - await fetchResource(params, boundPipelinePluginFn); - const parameters: PipelinePipingDefaultParameterList = - await pipelineInstance.getDefaultParameters({ - limit: 1000, - }); + let resourceList = await fn(params); + let resource: T[] = []; + + const items = resourceList.getItems(); + if (items) { + resource = [...items]; + } + + while (resourceList.hasNextPage) { + params.offset += params.limit; + resourceList = await fn(params); + const newItems = resourceList.getItems(); + if (newItems) { + resource.push(...newItems); + } + } + + return { + resource, + totalCount: resourceList.totalCount, + }; + } catch (error) { + const error_message = catchError(error).error_message; + if (error_message) { + throw new Error(error_message); + } + + throw new Error( + "Unhandled error. Please reach out to @devbabymri.org to report this error", + ); + } +}; + +// Type Definitions +interface FetchParams { + limit: number; + offset: number; +} + +interface FetchResourcesResult { + parameters: PipelinePipingDefaultParameterList; + pluginPipings: PluginPiping[]; + pipelinePlugins: Plugin[]; +} + +export async function fetchResources( + pipelineInstance: Pipeline, + params: FetchParams = { limit: 100, offset: 0 }, +): Promise<FetchResourcesResult> { + try { + const boundGetPlugins = pipelineInstance.getPlugins.bind(pipelineInstance); + const boundGetPluginPipings = + pipelineInstance.getPluginPipings.bind(pipelineInstance); + const [pluginPipings, pipelinePlugins, parameters] = await Promise.all([ + fetchResource<PluginPiping>(params, boundGetPluginPipings), + fetchResource<Plugin>(params, boundGetPlugins), + pipelineInstance.getDefaultParameters({ limit: 1000 }), + ]); return { parameters, - pluginPipings, - pipelinePlugins, + pluginPipings: pluginPipings.resource, + pipelinePlugins: pipelinePlugins.resource, }; } catch (e) { + // Comprehensive error handling if (e instanceof Error) { throw new Error(e.message); } - // Handles api errors + // Handles API errors const message = catchError(e).error_message; throw new Error(message); } @@ -279,8 +231,9 @@ export const generatePipelineWithName = async (pipelineName: string) => { pipelineInstance, }; } catch (error) { - if (error instanceof Error) { - throw new Error(error.message); + const error_message = catchError(error).error_message; + if (error_message) { + throw new Error(error_message); } throw new Error( @@ -347,14 +300,46 @@ export async function fetchComputeInfo( } } +// src/utils/catchError.ts + export function catchError(errorRequest: any) { - if (errorRequest?.response?.data) { - return { error_message: errorRequest.response.data }; + // Check if errorRequest has a response with data + if ( + errorRequest?.response?.data && + typeof errorRequest.response.data === "object" + ) { + /* +{ + "response": { + "data": { + "randomErrorKey": ["ErrorMessage"] + } + } } + */ + const data = errorRequest.response.data; + // Iterate through each key in the data object + for (const key in data) { + if (Object.prototype.hasOwnProperty.call(data, key)) { + const value = data[key]; + // Check if the value is an array with at least one message + if (Array.isArray(value) && value.length > 0) { + // Return the first error message found + return { error_message: value[0] }; + } + } + } + // If no valid error messages are found, return a generic error + return { error_message: "An unknown error occurred." }; + } + + // If errorRequest has a message property, return it if (errorRequest?.message) { return { error_message: errorRequest.message as string }; } + + // Fallback error message return { error_message: "Unexpected Error: Please report at @devbabymri.org", }; diff --git a/src/api/model.ts b/src/api/model.ts index 5d70f576d..461831e50 100644 --- a/src/api/model.ts +++ b/src/api/model.ts @@ -3,7 +3,6 @@ import type { PACSFile, PluginInstance, } from "@fnndsc/chrisapi"; -import _ from "lodash"; export interface IActionTypeParam { type: string; @@ -21,7 +20,7 @@ export interface INode { // extends cola.Node extends SVGSVGElement id: number; item: PluginInstance; - group?: number; + group?: NodeId; isRoot?: boolean; } @@ -54,118 +53,106 @@ export interface ILink { export class TreeModel { treeChart: ITreeChart; - constructor(items: PluginInstance[], rootNodeId?: NodeId) { + private nodeMap: Map<NodeId, PluginInstance[]>; + private _nodes: INode[] = []; + private _links: ILink[] = []; + private _totalRows = 0; // Counts the Max number of vertical nodes (for calculating height dynamically) + private _workingIndex = 0; + + constructor(items: PluginInstance[]) { this.treeChart = { nodes: [], links: [], totalRows: 0, }; - this.parseFeedTreeData(items, rootNodeId); + this.nodeMap = this.buildNodeMap(items); + this.parseFeedTreeData(); } - parseFeedTreeData(items: PluginInstance[], rootNodeId?: NodeId): ITreeChart { - // Note: Reverse the array to expedite parsing also for demo purposes - this._workingItems = items; - this._parseRootNode(items, rootNodeId); - this._parseTreeChildren(this._workingItems, this._workingId); - - // Set the treeChart objects: - this._setNodes(this._nodes); - this._setLinks(this._links); - this.treeChart.totalRows = this._totalRows; - return this.treeChart; + /** + * Builds a map where each key is a parent NodeId and the value is an array of its children PluginInstances. + * This allows O(1) access to children of any node, significantly improving time complexity. + */ + private buildNodeMap(items: PluginInstance[]): Map<NodeId, PluginInstance[]> { + const map = new Map<NodeId, PluginInstance[]>(); + items.forEach((item) => { + const parentId = item.data.previous_id; + if (!map.has(parentId)) { + map.set(parentId, []); + } + map.get(parentId)!.push(item); + }); + return map; } - // Working props for parsing - private _workingIndex = 0; - private _workingId: NodeId = 0; - private _workingItems: PluginInstance[] = []; - private _nodes: INode[] = []; - private _links: ILink[] = []; - private _totalRows = 0; // Counts the Max number of vertical nodes (for calculating height dynamically) - // Description: Find the root of this tree: - private _parseRootNode(items: PluginInstance[], rootNodeId: NodeId) { - const parentItem = _.find(items, (item: PluginInstance) => { - return item.data.previous_id === rootNodeId; - }); + /** + * Parses the tree data starting from the rootNodeId. + * If no rootNodeId is provided, it assumes items without a parent are roots. + */ + private parseFeedTreeData(): void { + const roots = this.getRootNodes(); - if (parentItem) { + roots.forEach((rootItem) => { this._nodes.push({ - item: parentItem, id: this._workingIndex, - group: 0, + item: rootItem, + group: rootItem.data.previous_id, isRoot: true, }); - this._workingItems = this._removeWorkingItem(parentItem); - this._workingId = parentItem.data.id; + const currentNodeId = this._workingIndex; this._workingIndex++; - } - // Note: this is not the root or leaf plugin so increment the total rows - this._totalRows++; - } + this._totalRows++; - // Description: Recursive method to build tree - private _parseTreeChildren( - workingItems: PluginInstance[], - _workingId: NodeId, - _parentIndex = 0, - ) { - const cloneArr: PluginInstance[] = workingItems.slice(); - cloneArr.forEach((item: PluginInstance) => { - if (item.data.previous_id === _workingId) { - const id = this._workingIndex; - // is this a child to the node we are working on? - this._nodes.push({ - id, - item, - group: item.data.previous_id, - }); - this._links.push({ - target: this._workingIndex, - source: _parentIndex, - value: 1, - }); - this._workingItems = this._removeWorkingItem(item); - this._workingIndex++; - this._findChildrenNodes(item.data.id, id); - } + this.buildTree(rootItem.data.id, currentNodeId, 1); }); - workingItems.length > 0 && this._totalRows++; // Increment total rows for counting vertical levels - } - // Description: Find children to this node - private _findChildrenNodes(id: NodeId, _parentIndex: number) { - const workingChildrenArr = _.filter( - this._workingItems, - (subitem: PluginInstance) => { - return id === subitem.data.previous_id; - }, - ); - // Does this node have children - recur - !!workingChildrenArr && - workingChildrenArr.length > 0 && - this._parseTreeChildren(workingChildrenArr, id, _parentIndex); - } - - // Description: Remove item from working array - private _removeWorkingItem(item: PluginInstance): PluginInstance[] { - const arr = _.filter(this._workingItems, (subitem: PluginInstance) => { - return item.data.id !== subitem.data.id; - }); - return arr; + this.treeChart.nodes = this._nodes; + this.treeChart.links = this._links; + this.treeChart.totalRows = this._totalRows; } - // Set the treeChart nodes array - private _setNodes(nodes: INode[]) { - this.treeChart.nodes = nodes; + /** + * Retrieves root nodes when no rootNodeId is provided. + */ + private getRootNodes(): PluginInstance[] { + // Assuming that a root node has a previous_id that is undefined or null + return Array.from(this.nodeMap.keys()).includes(undefined as any) || + Array.from(this.nodeMap.keys()).includes(null as any) + ? this.nodeMap.get(undefined as any) || + this.nodeMap.get(null as any) || + [] + : []; } - // Set the treeChart links array - private _setLinks(links: ILink[]) { - this.treeChart.links = links; + /** + * Recursively builds the tree by traversing the nodeMap. + */ + private buildTree( + parentId: NodeId, + parentIndex: number, + depth: number, + ): void { + const children = this.nodeMap.get(parentId); + if (!children) return; + + children.forEach((child) => { + const childId = this._workingIndex; + this._nodes.push({ + id: childId, + item: child, + group: parentId, + }); + this._links.push({ + source: parentIndex, + target: childId, + value: 1, + }); + this._workingIndex++; + this._totalRows = Math.max(this._totalRows, depth + 1); + this.buildTree(child.data.id, childId, depth + 1); + }); } } - // Description: Mapping for Viewer type by file type *Note: Should come from db // File type: Viewer component name export const fileViewerMap: any = { diff --git a/src/components/FeedTree/FeedGraph.tsx b/src/components/FeedTree/FeedGraph.tsx index 3d0aea32a..30bb39981 100644 --- a/src/components/FeedTree/FeedGraph.tsx +++ b/src/components/FeedTree/FeedGraph.tsx @@ -6,23 +6,18 @@ import ForceGraph2D, { type ForceGraphMethods, type NodeObject, } from "react-force-graph-2d"; -import { TreeModel } from "../../api/model"; +import { type ITreeChart, TreeModel } from "../../api/model"; import { setFeedLayout } from "../../store/feed/feedSlice"; -import { useAppSelector, useAppDispatch } from "../../store/hooks"; +import { useAppDispatch, useAppSelector } from "../../store/hooks"; import { type FeedTreeScaleType, NodeScaleDropdown } from "./Controls"; import "./FeedTree.css"; -import useSize from "./useSize"; import { SpinContainer } from "../Common"; +import useSize from "./useSize"; interface IFeedProps { onNodeClick: (node: PluginInstance) => void; } -interface GraphData { - nodes: NodeObject[]; - links: { source: string; target: string }[]; -} - const FeedGraph: React.FC<IFeedProps> = ({ onNodeClick }) => { const dispatch = useAppDispatch(); const currentLayout = useAppSelector((state) => state.feed.currentLayout); @@ -43,7 +38,7 @@ const FeedGraph: React.FC<IFeedProps> = ({ onNodeClick }) => { const size = useSize(graphRef); - const [graphData, setGraphData] = React.useState<GraphData | undefined>( + const [graphData, setGraphData] = React.useState<ITreeChart | undefined>( undefined, ); const [controls] = React.useState({ "DAG Orientation": "td" }); @@ -77,7 +72,7 @@ const FeedGraph: React.FC<IFeedProps> = ({ onNodeClick }) => { React.useEffect(() => { if (instances && instances.length > 0) { const tree = new TreeModel(instances); - //@ts-ignore + setGraphData(tree.treeChart); } }, [instances]); @@ -120,7 +115,7 @@ const FeedGraph: React.FC<IFeedProps> = ({ onNodeClick }) => { <div className="feed-tree__control"> <Switch id="layout" - label="2D" + label="3D" labelOff="2D" isChecked={currentLayout} onChange={() => { @@ -169,7 +164,7 @@ const FeedGraph: React.FC<IFeedProps> = ({ onNodeClick }) => { linkDirectionalParticleWidth={2} d3VelocityDecay={0.3} linkWidth={2} - nodeRelSize={8} + nodeRelSize={3} /> )} </ErrorBoundary> diff --git a/src/components/FeedTree/FeedTree.tsx b/src/components/FeedTree/FeedTree.tsx index ae7c7a5b6..758e10f55 100644 --- a/src/components/FeedTree/FeedTree.tsx +++ b/src/components/FeedTree/FeedTree.tsx @@ -1,4 +1,4 @@ -import { Alert, Switch, TextInput } from "@patternfly/react-core"; +import { Switch, TextInput } from "@patternfly/react-core"; import { type HierarchyPointLink, type HierarchyPointNode, @@ -8,7 +8,13 @@ import { import { type Selection, select } from "d3-selection"; import { type ZoomBehavior, zoom as d3Zoom, zoomIdentity } from "d3-zoom"; import { isEqual } from "lodash"; -import React, { useContext, useRef } from "react"; +import React, { + useCallback, + useContext, + useEffect, + useRef, + useState, +} from "react"; import { setFeedLayout, setSearchFilter, @@ -26,6 +32,13 @@ import type TreeNodeDatum from "./data"; import type { OwnProps, Point } from "./data"; import useSize from "./useSize"; +type FeedTreeFeature = + | "scale_enabled" + | "scale_type" + | "collapsible" + | "toggleLabel" + | "search"; + type FeedTreeState = { d3: { translate: Point; @@ -41,13 +54,11 @@ type FeedTreeState = { }; function calculateD3Geometry(nextProps: OwnProps, feedTreeProp: FeedTreeProp) { - let scale: number; + let scale = nextProps.zoom; if (nextProps.zoom > nextProps.scaleExtent.max) { scale = nextProps.scaleExtent.max; } else if (nextProps.zoom < nextProps.scaleExtent.min) { scale = nextProps.scaleExtent.min; - } else { - scale = nextProps.zoom; } return { translate: feedTreeProp.translate, @@ -74,15 +85,23 @@ function getInitialState( const svgClassName = "feed-tree__svg"; const graphClassName = "feed-tree__graph"; -const FeedTree = (props: OwnProps) => { +const FeedTree: React.FC<OwnProps> = ({ + data, + zoom = 1, + scaleExtent = { min: 0.1, max: 1.5 }, + nodeSize = { x: 120, y: 80 }, + separation, + tsIds, + changeOrientation, + onNodeClick, +}) => { const { isDarkTheme } = useContext(ThemeContext); const dispatch = useAppDispatch(); - const divRef = useRef<HTMLDivElement>(null); const { feedTreeProp, currentLayout, searchFilter } = useAppSelector( (state) => state.feed, ); - const [feedTree, setFeedTree] = React.useState<{ + const [feedTree, setFeedTree] = useState<{ nodes?: HierarchyPointNode<TreeNodeDatum>[]; links?: HierarchyPointLink<TreeNodeDatum>[]; }>({ @@ -90,10 +109,24 @@ const FeedTree = (props: OwnProps) => { links: [], }); const size = useSize(divRef); - const { nodeSize, separation, tsIds } = props; - const { orientation } = feedTreeProp; - - const generateTree = React.useCallback( + const { translate, orientation } = feedTreeProp; + const [feedState, setFeedState] = useState<FeedTreeState>( + getInitialState( + { + data, + zoom, + scaleExtent, + nodeSize, + separation, + tsIds, + changeOrientation, + onNodeClick, + }, + feedTreeProp, + ), + ); + const { scale } = feedState.d3; + const generateTree = useCallback( (data: TreeNodeDatum[]) => { const d3Tree = tree<TreeNodeDatum>() .nodeSize( @@ -101,19 +134,19 @@ const FeedTree = (props: OwnProps) => { ? [nodeSize.y, nodeSize.x] : [nodeSize.x, nodeSize.y], ) - .separation((a, b) => { - return a.data.parentId === b.data.parentId + .separation((a, b) => + a.data.parentId === b.data.parentId ? separation.siblings - : separation.nonSiblings; - }); + : separation.nonSiblings, + ); - let nodes: HierarchyPointNode<TreeNodeDatum>[] | undefined = undefined; - let links: HierarchyPointLink<TreeNodeDatum>[] | undefined = undefined; + let nodes: HierarchyPointNode<TreeNodeDatum>[] | undefined; + let links: HierarchyPointLink<TreeNodeDatum>[] | undefined; let newLinks: HierarchyPointLink<TreeNodeDatum>[] = []; - if (data) { + if (data && data.length > 0) { const rootNode = d3Tree( - hierarchy(data[0], (d) => (d.__rd3t.collapsed ? null : d.children)), + hierarchy(data[0], (d) => (d.__rd3t?.collapsed ? null : d.children)), ); nodes = rootNode.descendants(); links = rootNode.links(); @@ -125,57 +158,45 @@ const FeedTree = (props: OwnProps) => { const targetId = link.target.data.id; const sourceId = link.source.data.id; - // Check if targetId and sourceId exist and if at least one of them is in 'tsIds' if (targetId && sourceId && (tsIds[targetId] || tsIds[sourceId])) { - // 'tsPlugin' found + const topologicalLink = tsIds[targetId] + ? link.target + : link.source; - let topologicalLink: - | HierarchyPointNode<TreeNodeDatum> - | undefined; - - if (tsIds[targetId]) { - topologicalLink = link.target; - } else { - topologicalLink = link.source; - } - - // Check if 'topologicalLink' is defined - if (topologicalLink.data.id) { + if (topologicalLink?.data.id) { const parents = tsIds[topologicalLink.data.id]; - // Check if 'parents' is defined and not empty if (parents && parents.length > 0) { - const dict: { - [key: string]: HierarchyPointNode<TreeNodeDatum>; - } = {}; + const dict: Record< + string, + HierarchyPointNode<TreeNodeDatum> + > = {}; for (const innerLink of links) { if (innerLink.source && innerLink.target) { - for (let i = 0; i < parents.length; i++) { + parents.forEach((parentId) => { if ( - innerLink.source.data.id === parents[i] && - !dict[innerLink.source.data.id] + innerLink.source.data.id === parentId && + !dict[parentId] ) { - dict[innerLink.source.data.id] = innerLink.source; + dict[parentId] = innerLink.source; } if ( - innerLink.target.data.id === parents[i] && - !dict[innerLink.target.data.id] + innerLink.target.data.id === parentId && + !dict[parentId] ) { - dict[innerLink.target.data.id] = innerLink.target; + dict[parentId] = innerLink.target; } - } - } - } - - for (const key in dict) { - if (Object.prototype.hasOwnProperty.call(dict, key)) { - newLinksToAdd.push({ - source: dict[key], - target: topologicalLink, }); } } + + Object.values(dict).forEach((node) => { + newLinksToAdd.push({ + source: node, + target: topologicalLink, + }); + }); } } } @@ -185,19 +206,12 @@ const FeedTree = (props: OwnProps) => { newLinks = [...links, ...newLinksToAdd]; } - return { nodes, newLinks: newLinks }; + return { nodes, newLinks }; }, - [ - nodeSize.x, - nodeSize.y, - orientation, - separation.nonSiblings, - separation.siblings, - tsIds, - ], + [nodeSize, orientation, separation, tsIds], ); - React.useEffect(() => { + useEffect(() => { if (size?.width) { if (orientation === "vertical") { dispatch(setTranslate({ x: size.width / 2, y: 90 })); @@ -207,23 +221,21 @@ const FeedTree = (props: OwnProps) => { } }, [size, orientation, dispatch]); - const [feedState, setFeedState] = React.useState<FeedTreeState>( - getInitialState(props, feedTreeProp), - ); - - const { scale } = feedState.d3; - const { changeOrientation, scaleExtent } = props; + useEffect(() => { + if (data && data.length > 0) { + const { nodes, newLinks: links } = generateTree(data); + setFeedTree({ nodes, links }); + } + }, [data, generateTree]); - const bindZoomListener = React.useCallback(() => { - const { translate } = feedTreeProp; + const bindZoomListener = () => { const svg: Selection<SVGSVGElement, unknown, HTMLElement, any> = select( `.${svgClassName}`, ); const g: Selection<SVGGElement, unknown, HTMLElement, any> = select( `.${graphClassName}`, ); - - const zoom: ZoomBehavior<SVGSVGElement, unknown> = d3Zoom< + const zoomBehavior: ZoomBehavior<SVGSVGElement, unknown> = d3Zoom< SVGSVGElement, unknown >() @@ -233,57 +245,55 @@ const FeedTree = (props: OwnProps) => { }); svg - .call(zoom) + .call(zoomBehavior) .call( - zoom.transform, + zoomBehavior.transform, zoomIdentity.translate(translate.x, translate.y).scale(scale), ); - }, [scale, feedTreeProp]); + }; - React.useEffect(() => { + useEffect(() => { bindZoomListener(); - }, [bindZoomListener]); - - React.useEffect(() => { - if (props.data) { - const { nodes, newLinks: links } = generateTree(props.data); - setFeedTree(() => { - return { - nodes, - links, - }; - }); - } - }, [props.data, generateTree]); - - const handleChange = (feature: string, data?: any) => { - if (feature === "scale_enabled") { - setFeedState({ - ...feedState, - overlayScale: { - ...feedState.overlayScale, - enabled: !feedState.overlayScale.enabled, - }, - }); - } else if (feature === "scale_type") { - setFeedState({ - ...feedState, - overlayScale: { - ...feedState.overlayScale, - type: data, - }, - }); - } else { - setFeedState({ - ...feedState, - [feature]: !feedState[feature], - }); - } - }; + }, []); + + const handleChange = useCallback((feature: FeedTreeFeature, data?: any) => { + setFeedState((prevState) => { + switch (feature) { + case "scale_enabled": + return { + ...prevState, + overlayScale: { + ...prevState.overlayScale, + enabled: !prevState.overlayScale.enabled, + }, + }; + case "scale_type": + return { + ...prevState, + overlayScale: { + ...prevState.overlayScale, + type: data as FeedTreeScaleType, + }, + }; + case "collapsible": + case "toggleLabel": + case "search": + return { + ...prevState, + [feature]: !prevState[feature], + }; + default: + return prevState; + } + }); + }, []); - const handleNodeClick = (item: any) => { - props.onNodeClick(item); - }; + const handleNodeClick = useCallback( + (item: any) => { + onNodeClick(item); + }, + [onNodeClick], + ); const { nodes, links } = feedTree; @@ -291,18 +301,27 @@ const FeedTree = (props: OwnProps) => { <div className="feed-tree setFlex grabbable mode_tree" ref={divRef}> <div className="feed-tree__container"> <div className="feed-tree__container--labels"> - {/* Suppressing this for now as we don't know how which key events to hook for changing orientations */} - {/* biome-ignore lint/a11y/useKeyWithClickEvents: <explanation> */} <div - onClick={() => { - changeOrientation(orientation); - }} + onClick={() => changeOrientation(orientation)} className="feed-tree__orientation" + onKeyDown={(e) => { + if (e.key === "Enter" || e.key === " ") { + changeOrientation(orientation); + } + }} > {orientation === "vertical" ? ( - <RotateLeft className="feed-tree__orientation--icon" /> + <RotateLeft + className="feed-tree__orientation--icon" + aria-label="Rotate Left" + aria-hidden="true" + /> ) : ( - <RotateRight className="feed-tree__orientation--icon" /> + <RotateRight + className="feed-tree__orientation--icon" + aria-label="Rotate Right" + aria-hidden="true" + /> )} </div> @@ -312,20 +331,21 @@ const FeedTree = (props: OwnProps) => { label="Hide Labels" labelOff="Show Labels" isChecked={feedState.toggleLabel} - onChange={() => { - handleChange("toggleLabel"); - }} + aria-checked={feedState.toggleLabel} + onChange={() => handleChange("toggleLabel")} + aria-label="Toggle label visibility" /> </div> + <div className="feed-tree__control"> <Switch id="layout" label="Switch Layout" - labelOff="3D" + labelOff="2D" isChecked={currentLayout} - onChange={() => { - dispatch(setFeedLayout()); - }} + aria-checked={currentLayout} + onChange={() => dispatch(setFeedLayout())} + aria-label="Toggle graph layout from 2D to 3D" /> </div> @@ -333,33 +353,32 @@ const FeedTree = (props: OwnProps) => { <Switch id="individual-scale" label="Scale Nodes On" - labelOff="Scale Nodes Off " + labelOff="Scale Nodes Off" isChecked={feedState.overlayScale.enabled} - onChange={() => { - handleChange("scale_enabled"); - }} + aria-checked={feedState.overlayScale.enabled} + onChange={() => handleChange("scale_enabled")} + aria-label="Scale nodes" /> {feedState.overlayScale.enabled && ( <div className="dropdown-wrap"> <NodeScaleDropdown selected={feedState.overlayScale.type} - onChange={(type) => { - handleChange("scale_type", type); - }} + onChange={(type) => handleChange("scale_type", type)} /> </div> )} </div> + <div className="feed-tree__control"> <Switch id="search" label="Search On" - labelOff="Search Off " + labelOff="Search Off" isChecked={feedState.search} - onChange={() => { - handleChange("search"); - }} + aria-checked={feedState.search} + onChange={() => handleChange("search")} + aria-label="Toggle search a node in the tree" /> </div> @@ -367,57 +386,54 @@ const FeedTree = (props: OwnProps) => { {feedState.search && ( <TextInput value={searchFilter.value} - onChange={(_event, value: string) => { - dispatch(setSearchFilter(value.trim())); - }} + onChange={(_, value: string) => + dispatch(setSearchFilter(value.trim())) + } /> )} </div> </div> </div> - {feedTreeProp.translate.x > 0 && feedTreeProp.translate.y > 0 && ( - // biome-ignore lint/a11y/noSvgWithoutTitle: <explanation> + {translate.x > 0 && translate.y > 0 && ( <svg focusable="true" - className={`${svgClassName}`} + className={svgClassName} width="100%" height="100%" + role="img" + aria-label="Feed Tree Visualization" > <TransitionGroupWrapper component="g" className={graphClassName} - transform={`translate(${feedTreeProp.translate.x},${feedTreeProp.translate.y}) scale(${scale})`} + transform={`translate(${translate.x},${translate.y}) scale(${scale})`} > - {links?.map((linkData, i) => { - return ( - <Link - orientation={orientation} - key={`link${i}`} - linkData={linkData} - isDarkTheme={isDarkTheme} - /> - ); - })} - - {nodes?.map(({ data, x, y, parent }) => { - return ( - <NodeWrapper - key={`node + ${data.id}`} - data={data} - position={{ x, y }} - parent={parent} - onNodeClick={handleNodeClick} - orientation={orientation} - toggleLabel={feedState.toggleLabel} - overlayScale={ - feedState.overlayScale.enabled - ? feedState.overlayScale.type - : undefined - } - /> - ); - })} + {links?.map((linkData, i) => ( + <Link + key={`link${i}`} + orientation={orientation} + linkData={linkData} + isDarkTheme={isDarkTheme} + /> + ))} + + {nodes?.map(({ data, x, y, parent }) => ( + <NodeWrapper + key={`node${data.id}`} + data={data} + position={{ x, y }} + parent={parent} + onNodeClick={handleNodeClick} + orientation={orientation} + toggleLabel={feedState.toggleLabel} + overlayScale={ + feedState.overlayScale.enabled + ? feedState.overlayScale.type + : undefined + } + /> + ))} </TransitionGroupWrapper> </svg> )} @@ -427,22 +443,10 @@ const FeedTree = (props: OwnProps) => { const FeedTreeMemoed = React.memo( FeedTree, - (prevProps: OwnProps, nextProps: OwnProps) => { - if ( - !isEqual(prevProps.data, nextProps.data) || - prevProps.zoom !== nextProps.zoom || - prevProps.tsIds !== nextProps.tsIds - ) { - return false; - } - return true; - }, + (prevProps: OwnProps, nextProps: OwnProps) => + isEqual(prevProps.data, nextProps.data) && + prevProps.zoom === nextProps.zoom && + isEqual(prevProps.tsIds, nextProps.tsIds), ); export default FeedTreeMemoed; - -FeedTree.defaultProps = { - scaleExtent: { min: 0.1, max: 1.5 }, - zoom: 1, - nodeSize: { x: 120, y: 80 }, -}; diff --git a/src/components/FeedTree/Link.tsx b/src/components/FeedTree/Link.tsx index 54670eb59..29a6f880d 100644 --- a/src/components/FeedTree/Link.tsx +++ b/src/components/FeedTree/Link.tsx @@ -1,12 +1,12 @@ import React, { Fragment } from "react"; import { linkHorizontal, linkVertical } from "d3-shape"; -import { Datum } from "./data"; -import { HierarchyPointNode } from "d3-hierarchy"; +import type TreeNodeDatum from "./data"; +import type { HierarchyPointNode } from "d3-hierarchy"; import { select } from "d3-selection"; export interface TreeLinkDatum { - source: HierarchyPointNode<Datum>; - target: HierarchyPointNode<Datum>; + source: HierarchyPointNode<TreeNodeDatum>; + target: HierarchyPointNode<TreeNodeDatum>; } interface LinkProps { @@ -53,17 +53,17 @@ class Link extends React.Component<LinkProps, LinkState> { const { source, target } = linkData; - const deltaX = target.x - source.x, - deltaY = target.y - source.y, - dist = Math.sqrt(deltaX * deltaX + deltaY * deltaY), - normX = deltaX / dist, - normY = deltaY / dist, - sourcePadding = this.nodeRadius, - targetPadding = this.nodeRadius + 4, - sourceX = source.x + sourcePadding * normX, - sourceY = source.y + sourcePadding * normY, - targetX = target.x - targetPadding * normX, - targetY = target.y - targetPadding * normY; + const deltaX = target.x - source.x; + const deltaY = target.y - source.y; + const dist = Math.sqrt(deltaX * deltaX + deltaY * deltaY); + const normX = deltaX / dist; + const normY = deltaY / dist; + const sourcePadding = this.nodeRadius; + const targetPadding = this.nodeRadius + 4; + const sourceX = source.x + sourcePadding * normX; + const sourceY = source.y + sourcePadding * normY; + const targetX = target.x - targetPadding * normX; + const targetY = target.y - targetPadding * normY; if (ts) { return orientation === "horizontal" diff --git a/src/components/FeedTree/Node.tsx b/src/components/FeedTree/Node.tsx index 28168a40b..83a207b82 100644 --- a/src/components/FeedTree/Node.tsx +++ b/src/components/FeedTree/Node.tsx @@ -3,7 +3,14 @@ import { useMutation } from "@tanstack/react-query"; import { notification } from "antd"; import type { HierarchyPointNode } from "d3-hierarchy"; import { select } from "d3-selection"; -import { Fragment, memo, useContext, useEffect, useRef } from "react"; +import { + Fragment, + memo, + useCallback, + useContext, + useEffect, + useRef, +} from "react"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useAppDispatch, useAppSelector } from "../../store/hooks"; import { @@ -20,13 +27,13 @@ import { PipelineProvider } from "../PipelinesCopy/context"; import type { FeedTreeScaleType } from "./Controls"; import DropdownMenu from "./DropdownMenu"; import type TreeNodeDatum from "./data"; -import type { Datum, Point } from "./data"; +import type { Point } from "./data"; type NodeWrapperProps = { tsNodes?: PluginInstance[]; data: TreeNodeDatum; position: Point; - parent: HierarchyPointNode<Datum> | null; + parent: HierarchyPointNode<TreeNodeDatum> | null; onNodeClick: (node: any) => void; orientation: "horizontal" | "vertical"; overlayScale?: FeedTreeScaleType; @@ -77,12 +84,12 @@ const Node = (props: NodeProps) => { const searchFilter = useAppSelector((state) => state.feed.searchFilter); const { value } = searchFilter; - const applyNodeTransform = (transform: string, opacity = 1) => { + const applyNodeTransform = useCallback((transform: string, opacity = 1) => { select(nodeRef.current) .attr("transform", transform) .style("opacity", opacity); select(textRef.current).attr("transform", "translate(-28, 28)"); - }; + }, []); useEffect(() => { const nodeTransform = setNodeTransform(orientation, position); @@ -218,7 +225,7 @@ const Node = (props: NodeProps) => { message: "Preparing to initiate the zipping process...", }); } - }, [mutation.isSuccess, mutation.isError, mutation.isPending]); + }, [api, mutation.isSuccess, mutation.isError, mutation.isPending]); const textLabel = ( <g diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index aee22cc1f..b4b05b310 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -231,6 +231,8 @@ const TableSelectable: React.FC = () => { page={+page} onSetPage={onSetPage} onPerPageSelect={onPerPageSelect} + isCompact + aria-label="Feed table pagination" /> ); }; @@ -296,7 +298,7 @@ const TableSelectable: React.FC = () => { </CreateFeedProvider> </div> </PageSection> - <PageSection style={{ paddingBlockStart: "0.5em", height: "100%" }}> + <PageSection style={{ paddingBlockStart: "0.5em" }}> <Operations origin={{ type: OperationContext.FEEDS, @@ -319,7 +321,7 @@ const TableSelectable: React.FC = () => { > <Thead> <Tr> - <Th aria-label="feed-selection-checkbox" /> + <Th scope="col" aria-label="feed-selection-checkbox" /> {COLUMN_DEFINITIONS.map((column, columnIndex) => ( <Th key={column.id} sort={getSortParams(columnIndex)}> {column.label} @@ -417,6 +419,7 @@ const TableRow: React.FC<TableRowProps> = ({ }); }} isRowSelected={isSelected} + role="row" > <Td onClick={(e) => e.stopPropagation()} @@ -481,12 +484,14 @@ const DonutUtilization = (props: { return <div>N/A</div>; } let threshold = Number.POSITIVE_INFINITY; - const { progress, error: feedError, feedProgressText } = details; - let title = `${progress ? progress : 0}%`; + const { progress, error: feedError } = details; + let title = `${progress ?? 0}%`; let color = "blue"; + let ariaLabel = `Progress: ${progress ?? 0}%`; if (feedError) { color = "#ff0000"; threshold = progress; + ariaLabel = "Error in feed processing"; } // If initial node in a feed fails @@ -501,6 +506,7 @@ const DonutUtilization = (props: { } if (progress === 100) { title = "✔️"; + ariaLabel = "Feed processing complete"; } const mode = isDarkTheme ? "dark" : "light"; @@ -509,7 +515,7 @@ const DonutUtilization = (props: { <Tooltip content={`Progress: ${details.progress}%`}> <div className={`chart ${mode}`}> <ChartDonutUtilization - ariaTitle={feedProgressText} + ariaTitle={ariaLabel} data={{ x: "Analysis Progress", y: progress }} height={125} title={title} @@ -534,6 +540,7 @@ const FeedInfoColumn = ({ style={{ padding: 0, }} + aria-label={`View details for ${feed.data.name}`} > {feed.data.name} </Button> @@ -556,7 +563,9 @@ function EmptyStateTable() { <Tr> <Th /> {COLUMN_ORDER.map(({ label }) => ( - <Th key={label}>{label}</Th> + <Th scope="col" key={label}> + {label} + </Th> ))} </Tr> </Thead> @@ -592,7 +601,7 @@ function LoadingTable() { </Tr> </Thead> <Tbody> - {Array.from({ length: 15 }).map((_, index) => ( + {Array.from({ length: 20 }).map((_, index) => ( // biome-ignore lint/suspicious/noArrayIndexKey: <explanation> <Tr key={index}> <Td colSpan={COLUMN_ORDER.length + 1}> diff --git a/src/components/NewLibrary/components/ContextMenu.tsx b/src/components/NewLibrary/components/ContextMenu.tsx index 1a05b50cc..5e501d6fa 100644 --- a/src/components/NewLibrary/components/ContextMenu.tsx +++ b/src/components/NewLibrary/components/ContextMenu.tsx @@ -85,6 +85,7 @@ export const FolderContextMenu = (props: ContextMenuProps) => { {contextHolder} <Dropdown + aria-role="menu" menu={{ items, onClick: (info) => handleOperations(info.key) }} trigger={["contextMenu"]} > From 43d9fd033370b755a53d021cc3972ee9eb06c584 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 19:40:13 -0400 Subject: [PATCH 297/337] Fix some pypx types --- src/api/pfdcm/client.test.ts | 16 ++++++++++++++++ src/api/pfdcm/client.ts | 35 ++++++++++++++++++++++------------- src/api/pfdcm/models.ts | 6 +++--- 3 files changed, 41 insertions(+), 16 deletions(-) create mode 100644 src/api/pfdcm/client.test.ts diff --git a/src/api/pfdcm/client.test.ts b/src/api/pfdcm/client.test.ts new file mode 100644 index 000000000..6ce066ad5 --- /dev/null +++ b/src/api/pfdcm/client.test.ts @@ -0,0 +1,16 @@ +import { test, expect } from "vitest"; +import { parsePypxDicomDate } from "./client.ts"; + +test.each([ + ["20200203", new Date(2020, 1, 3)], + ["2020-02-03", new Date(2020, 1, 3)], + ["not-a-date", new Date(NaN)], +])("parseDicomDate(%s) -> %o", (value, expected) => { + const pypxTag = { + tag: "0008,0020", + label: "StudyDate", + value, + }; + const actual = parsePypxDicomDate(pypxTag); + expect(actual).toStrictEqual(expected); +}); diff --git a/src/api/pfdcm/client.ts b/src/api/pfdcm/client.ts index 7c1bce08e..6e0f6a029 100644 --- a/src/api/pfdcm/client.ts +++ b/src/api/pfdcm/client.ts @@ -164,18 +164,14 @@ function simplifyPypxStudyData(data: { }): StudyAndSeries { const study = { SpecificCharacterSet: getValue(data, "SpecificCharacterSet"), - StudyDate: - "value" in data.StudyDate ? parseDicomDate(data.StudyDate) : null, + StudyDate: parsePypxDicomDate(data.StudyDate), AccessionNumber: getValue(data, "AccessionNumber"), RetrieveAETitle: getValue(data, "RetrieveAETitle"), ModalitiesInStudy: getValue(data, "ModalitiesInStudy"), StudyDescription: getValue(data, "StudyDescription"), PatientName: getValue(data, "PatientName"), PatientID: getValue(data, "PatientID"), - PatientBirthDate: - "value" in data.PatientBirthDate - ? parseDicomDate(data.PatientBirthDate) - : null, + PatientBirthDate: parsePypxDicomDate(data.PatientBirthDate), PatientSex: getValue(data, "PatientSex"), PatientAge: getValue(data, "PatientAge"), ProtocolName: getValue(data, "ProtocolName"), @@ -185,7 +181,11 @@ function simplifyPypxStudyData(data: { "AcquisitionProtocolDescription", ), StudyInstanceUID: getValue(data, "StudyInstanceUID"), - NumberOfStudyRelatedSeries: getValue(data, "NumberOfStudyRelatedSeries"), + NumberOfStudyRelatedSeries: + "value" in data.NumberOfStudyRelatedSeries && + data.NumberOfStudyRelatedSeries.value !== 0 + ? parseInt(data.NumberOfStudyRelatedSeries.value) + : NaN, PerformedStationAETitle: getValue(data, "PerformedStationAETitle"), }; const series = Array.isArray(data.series) @@ -214,8 +214,8 @@ function simplifyPypxSeriesData(data: { [key: string]: PypxTag }): Series { : parsedNumInstances; return { SpecificCharacterSet: "" + data.SpecificCharacterSet.value, - StudyDate: "" + data.StudyDate.value, - SeriesDate: "" + data.SeriesDate.value, + StudyDate: parsePypxDicomDate(data.StudyDate), + SeriesDate: parsePypxDicomDate(data.SeriesDate), AccessionNumber: "" + data.AccessionNumber.value, RetrieveAETitle: "" + data.RetrieveAETitle.value, Modality: "" + data.Modality.value, @@ -223,7 +223,7 @@ function simplifyPypxSeriesData(data: { [key: string]: PypxTag }): Series { SeriesDescription: "" + data.SeriesDescription.value, PatientName: "" + data.PatientName.value, PatientID: "" + data.PatientID.value, - PatientBirthDate: parseDicomDate(data.PatientBirthDate), + PatientBirthDate: parsePypxDicomDate(data.PatientBirthDate), PatientSex: "" + data.PatientSex.value, PatientAge: "" + data.PatientAge.value, ProtocolName: "" + data.ProtocolName.value, @@ -240,10 +240,19 @@ function simplifyPypxSeriesData(data: { [key: string]: PypxTag }): Series { /** * Parse a DICOM DateString (DS), which is in YYYYMMDD format. * + * The invalid format "YYYY-MM-DD" is also accepted. + * * https://dicom.nema.org/medical/dicom/current/output/chtml/part05/sect_6.2.html */ -function parseDicomDate(tag: PypxTag): Date { - return parseDate("" + tag.value, "yyyyMMdd", new Date()); +function parsePypxDicomDate(tag: PypxTag | object | undefined): Date | null { + if (!tag || !("value" in tag) || tag.value === 0) { + return null; + } + const parsed = parseDate("" + tag.value, "yyyyMMdd", new Date()); + if (!Number.isNaN(parsed.getFullYear())) { + return parsed; + } + return parseDate("" + tag.value, "yyyy-MM-dd", new Date()); } -export { PfdcmClient }; +export { PfdcmClient, parsePypxDicomDate }; diff --git a/src/api/pfdcm/models.ts b/src/api/pfdcm/models.ts index 3b1818f9d..517ca03f6 100644 --- a/src/api/pfdcm/models.ts +++ b/src/api/pfdcm/models.ts @@ -47,7 +47,7 @@ type Study = { AcquisitionProtocolName: string; AcquisitionProtocolDescription: string; StudyInstanceUID: string; - NumberOfStudyRelatedSeries: string; + NumberOfStudyRelatedSeries: number; PerformedStationAETitle: string; }; @@ -56,8 +56,8 @@ type Study = { */ type Series = { SpecificCharacterSet: string; - StudyDate: string; - SeriesDate: string; + StudyDate: Date | null; + SeriesDate: Date | null; AccessionNumber: string; RetrieveAETitle: string; Modality: string; From d0d2bd053a139af2713303ec4bc4858416aa3cdd Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 19:41:35 -0400 Subject: [PATCH 298/337] Automatically expand if only one study found --- .../Pacs/components/PacsStudiesView.test.tsx | 42 ++++++++++++++++- .../Pacs/components/PacsStudiesView.tsx | 7 +++ .../Pacs/components/testData/dai.ts | 46 +++++++++++++++++++ 3 files changed, 93 insertions(+), 2 deletions(-) create mode 100644 src/components/Pacs/components/testData/dai.ts diff --git a/src/components/Pacs/components/PacsStudiesView.test.tsx b/src/components/Pacs/components/PacsStudiesView.test.tsx index 2df7e20e2..a04fa754b 100644 --- a/src/components/Pacs/components/PacsStudiesView.test.tsx +++ b/src/components/Pacs/components/PacsStudiesView.test.tsx @@ -1,3 +1,41 @@ -import { test, expect } from "vitest"; +import { describe, it, vi, expect } from "vitest"; +import { PacsStudyState, SeriesPullState } from "../types"; +import { DAI_SERIES, DAI_STUDY } from "./testData/dai.ts"; +import { render } from "@testing-library/react"; +import PacsStudiesView from "./PacsStudiesView.tsx"; +import { DEFAULT_PREFERENCES } from "../defaultPreferences.ts"; -test.skip("PacsStudiesView", () => {}); +describe("'Pull Study' button", () => { + it("expands first study if there is only one study", async () => { + const studies: PacsStudyState[] = [ + { + info: DAI_STUDY, + series: [ + { + errors: [], + info: DAI_SERIES, + receivedCount: 0, + inCube: null, + pullState: SeriesPullState.NOT_CHECKED, + }, + ], + }, + ]; + const onRetrieve = vi.fn(); + const onStudyExpand = vi.fn(); + + render( + <PacsStudiesView + preferences={DEFAULT_PREFERENCES} + studies={studies} + onRetrieve={onRetrieve} + expandedStudyUids={[]} + onStudyExpand={onStudyExpand} + />, + ); + expect(onStudyExpand).toHaveBeenCalledOnce(); + expect(onStudyExpand.mock.lastCall?.[0]).toStrictEqual([ + studies[0].info.StudyInstanceUID, + ]); + }); +}); diff --git a/src/components/Pacs/components/PacsStudiesView.tsx b/src/components/Pacs/components/PacsStudiesView.tsx index 4e7c8bc88..beea71572 100644 --- a/src/components/Pacs/components/PacsStudiesView.tsx +++ b/src/components/Pacs/components/PacsStudiesView.tsx @@ -24,6 +24,13 @@ const PacsStudiesView: React.FC<PacsStudiesViewProps> = ({ onStudyExpand, preferences, }) => { + React.useEffect(() => { + // Automatically expand first study if there is only one study + if (studies.length === 1 && expandedStudyUids?.length === 0) { + onStudyExpand?.([studies[0].info.StudyInstanceUID]); + } + }, [studies]); + const items: CollapseProps["items"] = React.useMemo(() => { return studies.map(({ info, series }) => { return { diff --git a/src/components/Pacs/components/testData/dai.ts b/src/components/Pacs/components/testData/dai.ts new file mode 100644 index 000000000..59d626996 --- /dev/null +++ b/src/components/Pacs/components/testData/dai.ts @@ -0,0 +1,46 @@ +import { Study, Series } from "../../../../api/pfdcm/models"; + +const DAI_STUDY: Study = { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: null, + AccessionNumber: "123abc", + RetrieveAETitle: "HOSPITALNAME", + ModalitiesInStudy: "CR", + StudyDescription: "Chest X-ray for COVID-19 Screening", + PatientName: "George Smith", + PatientID: "DAI000290", + PatientBirthDate: null, + PatientSex: "M", + PatientAge: "71", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: "1.2.276.0.7230010.3.1.2.8323329.8519.1517874337.873082", + NumberOfStudyRelatedSeries: 1, + PerformedStationAETitle: "no value provided for 0040,0241", +}; + +const DAI_SERIES: Series = { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: DAI_STUDY.StudyDate, + SeriesDate: DAI_STUDY.StudyDate, + AccessionNumber: "123abc", + RetrieveAETitle: "HOSPITALNAME", + Modality: "CR", + StudyDescription: "Chest X-ray for COVID-19 Screening", + SeriesDescription: "Series Description: Unknown", + PatientName: "George Smith", + PatientID: "DAI000290", + PatientBirthDate: new Date(1950, 2, 7), + PatientSex: "M", + PatientAge: "71", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: "1.2.276.0.7230010.3.1.2.8323329.8519.1517874337.873082", + SeriesInstanceUID: "1.2.276.0.7230010.3.1.3.8323329.8519.1517874337.873097", + NumberOfSeriesRelatedInstances: 1, + PerformedStationAETitle: "no value provided for 0040,0241", +}; + +export { DAI_STUDY, DAI_SERIES }; From 8a8aedb874131ab676f6727c59ebca5de3e09fc5 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 22:25:49 -0400 Subject: [PATCH 299/337] Fix infinite useEffects calling lonk.subscribe --- src/api/lonk/useLonk.test.tsx | 8 ++- src/api/lonk/useLonk.ts | 25 +++++-- src/components/Pacs/PacsController.tsx | 91 +++++++++++++++----------- 3 files changed, 79 insertions(+), 45 deletions(-) diff --git a/src/api/lonk/useLonk.test.tsx b/src/api/lonk/useLonk.test.tsx index a3cadb76a..cb9ea0756 100644 --- a/src/api/lonk/useLonk.test.tsx +++ b/src/api/lonk/useLonk.test.tsx @@ -28,7 +28,13 @@ const TestLonkComponent: React.FC<TestLonkComponentProps> = ({ setSubscribedPacsName(result.pacs_name); setSubscribedSeriesUid(result.SeriesInstanceUID); }, - [lonk.subscribe, setSubscribedPacsName, setSubscribedSeriesUid], + [ + lonk.subscribe, + pacs_name, + SeriesInstanceUID, + setSubscribedPacsName, + setSubscribedSeriesUid, + ], ); const unsubscribe = React.useCallback(async () => { await lonk.unsubscribeAll(); diff --git a/src/api/lonk/useLonk.ts b/src/api/lonk/useLonk.ts index 9d358c261..a6035d589 100644 --- a/src/api/lonk/useLonk.ts +++ b/src/api/lonk/useLonk.ts @@ -1,5 +1,5 @@ import Client, { DownloadToken } from "@fnndsc/chrisapi"; -import useWebSocket, { Options, ReadyState } from "react-use-websocket"; +import useWebSocket, { Options } from "react-use-websocket"; import { LonkHandlers, SeriesKey } from "./types.ts"; import React from "react"; import LonkSubscriber from "./LonkSubscriber.ts"; @@ -56,19 +56,30 @@ function useLonk({ const getLonkUrl = React.useCallback(async () => { const downloadToken = await client.createDownloadToken(); return getWebsocketUrl(downloadToken); - }, [client, getWebsocketUrl]); + }, [client.createDownloadToken]); const handlers = { onDone, onProgress, onError, onMessageError }; - const [subscriber, _setSubscriber] = React.useState( + const [subscriber, setSubscriber] = React.useState( new LonkSubscriber(handlers), ); const onMessage = React.useCallback( (event: MessageEvent<any>) => { subscriber.handle(event.data); }, - [onProgress, onDone, onError], + [subscriber.handle], + ); + const onOpen = React.useCallback( + (event: WebSocketEventMap["open"]) => { + // when the websocket connection (re-)opens, (re-)initialize the + // LonkSubscriber instance so that React.useEffect which specify + // the subscriber in their depdencency arrays get (re-)triggered. + setSubscriber(new LonkSubscriber(handlers)); + options.onOpen?.(event); + }, + [options.onOpen], ); const hook = useWebSocket(getLonkUrl, { ...options, + onOpen, onError: onWebsocketError, onMessage, }); @@ -76,12 +87,14 @@ function useLonk({ const subscribe = React.useCallback( (pacs_name: string, SeriesInstanceUID: string) => subscriber.subscribe(pacs_name, SeriesInstanceUID, hook), - [subscriber, hook], + // N.B.: hook must not be in the dependency array, because it changes + // each time the websocket sends/receives data. + [subscriber.subscribe], ); const unsubscribeAll = React.useCallback( () => subscriber.unsubscribeAll(hook), - [subscriber, hook], + [subscriber.unsubscribeAll], ); return { diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index f7862bb36..6354d42c0 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -418,47 +418,58 @@ const PacsController: React.FC<PacsControllerProps> = ({ const lonk = useLonk({ client: chrisClient, - onDone(pacs_name: string, SeriesInstanceUID: string) { - updateReceiveState(pacs_name, SeriesInstanceUID, (draft) => { - draft.done = true; - }); - }, - onProgress(pacs_name: string, SeriesInstanceUID: string, ndicom: number) { - updateReceiveState(pacs_name, SeriesInstanceUID, (draft) => { - draft.receivedCount = ndicom; - }); - }, - onError(pacs_name: string, SeriesInstanceUID: string, error: string) { - updateReceiveState(pacs_name, SeriesInstanceUID, (draft) => { - draft.errors.push(error); - }); - const desc = getSeriesDescriptionOr(pacs_name, SeriesInstanceUID); - message.error( - <>There was an error while receiving the series "{desc}"</>, - ); - }, - onMessageError(data: any, error: string) { - console.error("LONK message error", error, data); - message.error( - <> - A <em>LONK</em> error occurred, please check the console. - </>, - ); - }, + onDone: React.useCallback( + (pacs_name: string, SeriesInstanceUID: string) => + updateReceiveState(pacs_name, SeriesInstanceUID, (draft) => { + draft.done = true; + }), + [updateReceiveState], + ), + onProgress: React.useCallback( + (pacs_name: string, SeriesInstanceUID: string, ndicom: number) => + updateReceiveState(pacs_name, SeriesInstanceUID, (draft) => { + draft.receivedCount = ndicom; + }), + [updateReceiveState], + ), + onError: React.useCallback( + (pacs_name: string, SeriesInstanceUID: string, error: string) => { + updateReceiveState(pacs_name, SeriesInstanceUID, (draft) => { + draft.errors.push(error); + }); + const desc = getSeriesDescriptionOr(pacs_name, SeriesInstanceUID); + message.error( + <>There was an error while receiving the series "{desc}"</>, + ); + }, + [updateReceiveState, getSeriesDescriptionOr, message.error], + ), + onMessageError: React.useCallback( + (data: any, error: string) => { + console.error("LONK message error", error, data); + message.error( + <> + A <em>LONK</em> error occurred, please check the console. + </>, + ); + }, + [message.error], + ), retryOnError: true, reconnectAttempts: 3, reconnectInterval: 3000, - shouldReconnect(e) { - return e.code < 400 || e.code > 499; - }, - onReconnectStop() { - setWsError(<>The WebSocket is disconnected.</>); - }, - onWebsocketError() { - message.error( - <>There was an error with the WebSocket. Reconnecting…</>, - ); - }, + shouldReconnect: errorCodeIs4xx, + onReconnectStop: React.useCallback( + () => setWsError(<>The WebSocket is disconnected.</>), + [setWsError], + ), + onWebsocketError: React.useCallback( + () => + message.error( + <>There was an error with the WebSocket. Reconnecting…</>, + ), + [message.error], + ), }); // ======================================== @@ -640,5 +651,9 @@ const PacsController: React.FC<PacsControllerProps> = ({ ); }; +function errorCodeIs4xx(e: { code: number }) { + return e.code < 400 || e.code > 499; +} + export type { PacsControllerProps }; export default PacsController; From c0001cd00ce2489eae22afb0b06d64e62e9e6661 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 23:33:16 -0400 Subject: [PATCH 300/337] Add tests --- .../Pacs/components/PacsStudiesView.test.tsx | 156 +++++++-- .../Pacs/components/PacsStudiesView.tsx | 11 +- .../Pacs/components/SeriesList.test.tsx | 22 ++ src/components/Pacs/components/SeriesList.tsx | 156 +-------- .../Pacs/components/SeriesRow.test.tsx | 78 +++++ src/components/Pacs/components/SeriesRow.tsx | 155 +++++++++ .../Pacs/components/testData/remind.ts | 318 ++++++++++++++++++ 7 files changed, 715 insertions(+), 181 deletions(-) create mode 100644 src/components/Pacs/components/SeriesList.test.tsx create mode 100644 src/components/Pacs/components/SeriesRow.test.tsx create mode 100644 src/components/Pacs/components/SeriesRow.tsx create mode 100644 src/components/Pacs/components/testData/remind.ts diff --git a/src/components/Pacs/components/PacsStudiesView.test.tsx b/src/components/Pacs/components/PacsStudiesView.test.tsx index a04fa754b..eda3ca2fc 100644 --- a/src/components/Pacs/components/PacsStudiesView.test.tsx +++ b/src/components/Pacs/components/PacsStudiesView.test.tsx @@ -1,41 +1,147 @@ -import { describe, it, vi, expect } from "vitest"; -import { PacsStudyState, SeriesPullState } from "../types"; +import { describe, expect, it, test, vi } from "vitest"; +import { PacsSeriesState, PacsStudyState, SeriesPullState } from "../types"; import { DAI_SERIES, DAI_STUDY } from "./testData/dai.ts"; -import { render } from "@testing-library/react"; +import { render, screen } from "@testing-library/react"; import PacsStudiesView from "./PacsStudiesView.tsx"; import { DEFAULT_PREFERENCES } from "../defaultPreferences.ts"; +import REMIND_STUDIES from "./testData/remind.ts"; + +test("First study should be expanded if there is only one study", async () => { + const studies: PacsStudyState[] = [ + { + info: DAI_STUDY, + series: [ + { + errors: [], + info: DAI_SERIES, + receivedCount: 0, + inCube: null, + pullState: SeriesPullState.NOT_CHECKED, + }, + ], + }, + ]; + const onRetrieve = vi.fn(); + const onStudyExpand = vi.fn(); + + render( + <PacsStudiesView + preferences={DEFAULT_PREFERENCES} + studies={studies} + onRetrieve={onRetrieve} + expandedStudyUids={[]} + onStudyExpand={onStudyExpand} + />, + ); + expect(onStudyExpand).toHaveBeenCalledOnce(); + expect(onStudyExpand.mock.lastCall?.[0]).toStrictEqual([ + studies[0].info.StudyInstanceUID, + ]); +}); describe("'Pull Study' button", () => { - it("expands first study if there is only one study", async () => { - const studies: PacsStudyState[] = [ - { - info: DAI_STUDY, - series: [ - { - errors: [], - info: DAI_SERIES, - receivedCount: 0, - inCube: null, - pullState: SeriesPullState.NOT_CHECKED, - }, - ], - }, - ]; + it("should be clickable if not expanded, and should call both `onRetrieve` and `onStudyExpand` when clicked", async () => { + const studies: PacsStudyState[] = remindStartingState(); + // Start off with the first study expanded and all of their series + // pending check for existence in CUBE. + const initiallyExpandedStudyUids = [studies[0].info.StudyInstanceUID]; + studies[0].series = studies[0].series.map((state) => ({ + ...state, + pullState: SeriesPullState.CHECKING, + })); const onRetrieve = vi.fn(); const onStudyExpand = vi.fn(); - render( <PacsStudiesView preferences={DEFAULT_PREFERENCES} studies={studies} - onRetrieve={onRetrieve} - expandedStudyUids={[]} + expandedStudyUids={initiallyExpandedStudyUids} onStudyExpand={onStudyExpand} + onRetrieve={onRetrieve} />, ); - expect(onStudyExpand).toHaveBeenCalledOnce(); - expect(onStudyExpand.mock.lastCall?.[0]).toStrictEqual([ - studies[0].info.StudyInstanceUID, - ]); + const pullStudyButtons = screen.getAllByTitle("Pull study"); + expect(pullStudyButtons).toHaveLength(studies.length); + const loadingIcons = screen.getAllByLabelText("loading"); + expect( + // First "Pull Study" button should contain a loading indicator, + // because its series are currently `SeriesPullState.CHECKING` + loadingIcons.find((ele) => pullStudyButtons[0].contains(ele)), + ).toBeTruthy(); + expect( + // Second "Pull Study" button should not contain a loading indicator, + // because it is not expanded. + loadingIcons.find((ele) => pullStudyButtons[1].contains(ele)), + ).toBeUndefined(); + pullStudyButtons[1].click(); + await expect.poll(() => onRetrieve).toHaveBeenCalledOnce(); + expect(onRetrieve).toHaveBeenCalledWith({ + patientID: studies[1].info.PatientID, + studyInstanceUID: studies[1].info.StudyInstanceUID, + }); + await expect.poll(() => onStudyExpand).toHaveBeenCalledOnce(); + expect(onStudyExpand).toHaveBeenCalledWith( + initiallyExpandedStudyUids.concat([studies[1].info.StudyInstanceUID]), + ); }); + + it.each([ + [ + { + pullState: SeriesPullState.CHECKING, + }, + ], + [ + { + pullState: SeriesPullState.WAITING_OR_COMPLETE, + inCube: null, + }, + ], + [ + { + pullState: SeriesPullState.PULLING, + }, + ], + [ + { + pullState: SeriesPullState.CHECKING, + }, + ], + ])( + "should be loading when any series has partial state %o", + async (state: Partial<Pick<PacsSeriesState, "pullState" | "inCube">>) => { + const studies = remindStartingState(); + studies[0].series[2] = { ...studies[0].series[2], ...state }; + const onRetrieve = vi.fn(); + render( + <PacsStudiesView + preferences={DEFAULT_PREFERENCES} + studies={studies} + onRetrieve={onRetrieve} + expandedStudyUids={[studies[0].info.StudyInstanceUID]} + onStudyExpand={vi.fn()} + />, + ); + const pullStudyButtons = screen.getAllByTitle("Pull study"); + const pullStudyButton = pullStudyButtons[0]; + const loadingIcons = screen.getAllByLabelText("loading"); + expect( + // First "Pull Study" button should contain a loading indicator, + loadingIcons.find((ele) => pullStudyButton.contains(ele)), + ).toBeTruthy(); + }, + ); }); + +function remindStartingState(): PacsStudyState[] { + return REMIND_STUDIES.map(({ study, series }) => ({ + info: study, + series: series.map((info) => ({ + info, + errors: [], + receivedCount: 0, + pullState: SeriesPullState.NOT_CHECKED, + inCube: null, + })), + })); +} diff --git a/src/components/Pacs/components/PacsStudiesView.tsx b/src/components/Pacs/components/PacsStudiesView.tsx index beea71572..cf46f5219 100644 --- a/src/components/Pacs/components/PacsStudiesView.tsx +++ b/src/components/Pacs/components/PacsStudiesView.tsx @@ -46,12 +46,17 @@ const PacsStudiesView: React.FC<PacsStudiesViewProps> = ({ isLoading={ series.length === 0 ? false : !!series.find(isSeriesLoading) } - onRetrieve={() => + onRetrieve={() => { + // When a study is retrieved, we want to call both + // onStudyExpand and onRetrieve + if (expandedStudyUids && onStudyExpand) { + onStudyExpand(expandedStudyUids.concat(info.StudyInstanceUID)); + } onRetrieve({ patientID: info.PatientID, studyInstanceUID: info.StudyInstanceUID, - }) - } + }); + }} /> ), children: ( diff --git a/src/components/Pacs/components/SeriesList.test.tsx b/src/components/Pacs/components/SeriesList.test.tsx new file mode 100644 index 000000000..44f2f8bfb --- /dev/null +++ b/src/components/Pacs/components/SeriesList.test.tsx @@ -0,0 +1,22 @@ +import { expect, test, vi } from "vitest"; +import { SeriesPullState } from "../types.ts"; +import { render, screen } from "@testing-library/react"; +import REMIND_STUDIES from "./testData/remind.ts"; +import SeriesList from "./SeriesList.tsx"; + +test("DICOM series should be ready and then fire onRetrieve when clicked", async () => { + const onRetrieve = vi.fn(); + const states = REMIND_STUDIES[0].series.map((info) => ({ + info, + errors: [], + inCube: null, + pullState: SeriesPullState.READY, + receivedCount: 0, + })); + render(<SeriesList states={states} onRetrieve={onRetrieve} />); + const buttons = screen.getAllByRole("button"); + const thirdButton = buttons[2]; + thirdButton.click(); + await expect.poll(() => onRetrieve).toHaveBeenCalledOnce(); + expect(onRetrieve).toHaveBeenCalledWith(states[2]); +}); diff --git a/src/components/Pacs/components/SeriesList.tsx b/src/components/Pacs/components/SeriesList.tsx index 476c80c9e..3c26db067 100644 --- a/src/components/Pacs/components/SeriesList.tsx +++ b/src/components/Pacs/components/SeriesList.tsx @@ -1,20 +1,7 @@ -import { - Button, - type ButtonProps, - Descriptions, - Flex, - Grid, - List, - Progress, - Tooltip, - Typography, -} from "antd"; -import { type PacsSeriesState, SeriesPullState } from "../types.ts"; -import ModalityBadges from "./ModalityBadges.tsx"; -import { ImportOutlined, WarningFilled } from "@ant-design/icons"; -import styles from "./SeriesList.module.css"; +import { List } from "antd"; +import type { PacsSeriesState } from "../types.ts"; import React from "react"; -import { isSeriesLoading } from "./helpers.ts"; +import SeriesRow from "./SeriesRow.tsx"; type SeriesListProps = { states: PacsSeriesState[]; @@ -22,143 +9,6 @@ type SeriesListProps = { onRetrieve?: (state: PacsSeriesState) => void; }; -type SeriesRowProps = PacsSeriesState & { - showUid?: boolean; - onRetrieve?: () => void; -}; - -const SeriesRow: React.FC<SeriesRowProps> = ({ - info, - errors, - pullState, - inCube, - receivedCount, - showUid, - onRetrieve, -}) => { - const isLoading = React.useMemo( - () => isSeriesLoading({ pullState, inCube }), - [pullState, inCube], - ); - - const tooltipTitle = React.useMemo(() => { - if (errors.length > 0) { - return <>Error: {errors[0]}</>; - } - if (pullState === SeriesPullState.NOT_CHECKED) { - return <>Not ready.</>; - } - if (pullState === SeriesPullState.CHECKING) { - return <>Checking availability…</>; - } - if (pullState === SeriesPullState.READY) { - return ( - <> - Pull "{info.SeriesDescription}" into <em>ChRIS</em>. - </> - ); - } - if (pullState === SeriesPullState.PULLING) { - return <>Receiving…</>; - } - if (inCube === null) { - return <>Waiting...</>; - } - return ( - <> - This series is available in <em>ChRIS</em>. - </> - ); - }, [errors, info, pullState, inCube]); - - const buttonColor = React.useMemo((): ButtonProps["color"] => { - if (errors.length > 0) { - return "danger"; - } - if (pullState === SeriesPullState.READY) { - return "primary"; - } - return "default"; - }, [errors, pullState]); - - const percentDone = React.useMemo(() => { - if (inCube) { - return 100; - } - if (pullState === SeriesPullState.WAITING_OR_COMPLETE) { - return 99; - } - return ( - (99 * receivedCount) / - (info.NumberOfSeriesRelatedInstances || Number.POSITIVE_INFINITY) - ); - }, [inCube, pullState, receivedCount, info.NumberOfSeriesRelatedInstances]); - - return ( - <Flex - wrap - vertical={false} - align="center" - justify="space-between" - gap={0} - className={`${styles.seriesRow} ${Grid.useBreakpoint().xl && styles.xl}`} - > - <div className={styles.modality}> - <ModalityBadges modalities={info.Modality} /> - </div> - <div className={styles.description}> - <Typography.Text ellipsis={true}> - {info.SeriesDescription.trim()} - </Typography.Text> - </div> - <div className={styles.fileCount}> - <Typography.Text className={styles.fileCount}> - {info.NumberOfSeriesRelatedInstances === 1 - ? "1 file" - : `${info.NumberOfSeriesRelatedInstances === null ? "?" : info.NumberOfSeriesRelatedInstances} files`} - </Typography.Text> - </div> - <div className={styles.progress}> - {/* TODO Progress 100% text color should be changed from dark blue */} - <Progress - type="line" - format={(n) => `${Math.round(n ?? 0)}%`} - percent={percentDone} - status={ - errors.length > 0 ? "exception" : inCube ? "success" : "normal" - } - /> - </div> - <div className={styles.pullButton}> - <Tooltip placement="left" title={tooltipTitle}> - <Button - loading={isLoading} - disabled={pullState !== SeriesPullState.READY} - color={buttonColor} - onClick={onRetrieve} - > - {/* TODO Button width is different if isLoading */} - {errors.length > 1 ? ( - <WarningFilled /> - ) : isLoading ? ( - <></> - ) : ( - <ImportOutlined /> - )} - </Button> - </Tooltip> - </div> - {showUid && ( - <Descriptions className={styles.seriesInstanceUid}> - <Descriptions.Item label="SeriesInstanceUID"> - {info.SeriesInstanceUID} - </Descriptions.Item> - </Descriptions> - )} - </Flex> - ); -}; - const SeriesList: React.FC<SeriesListProps> = ({ states, showUid, diff --git a/src/components/Pacs/components/SeriesRow.test.tsx b/src/components/Pacs/components/SeriesRow.test.tsx new file mode 100644 index 000000000..ca802e2a1 --- /dev/null +++ b/src/components/Pacs/components/SeriesRow.test.tsx @@ -0,0 +1,78 @@ +import { describe, it, expect, vi } from "vitest"; +import SeriesRow, { type SeriesRowProps } from "./SeriesRow.tsx"; +import { render, screen } from "@testing-library/react"; +import { DAI_SERIES } from "./testData/dai.ts"; +import { type PacsSeriesState, SeriesPullState } from "../types.ts"; +import { PACSSeries } from "@fnndsc/chrisapi"; + +const DEFAULT_STATE: PacsSeriesState = { + info: DAI_SERIES, + errors: [], + pullState: SeriesPullState.NOT_CHECKED, + inCube: null, + receivedCount: 0, +}; + +describe("'Pull Series' button", () => { + it.each([ + [ + { + pullState: SeriesPullState.CHECKING, + }, + ], + [ + { + pullState: SeriesPullState.PULLING, + }, + ], + [ + { + pullState: SeriesPullState.WAITING_OR_COMPLETE, + inCube: null, + }, + ], + ])( + "should be loading", + async ( + state: Partial<Omit<SeriesRowProps, "info" | "showUid" | "onRetrieve">>, + ) => { + const props = { ...DEFAULT_STATE, ...state }; + render(<SeriesRow {...props} />); + const button = screen.getByRole("button"); + expect(button.getAttribute("color")).toBe("default"); + const loadingIcon = screen.getByLabelText("loading"); + expect(button.contains(loadingIcon)).toBe(true); + }, + ); + + it("should be done pulling", async () => { + const props = { + ...DEFAULT_STATE, + pullState: SeriesPullState.WAITING_OR_COMPLETE, + inCube: new PACSSeries("https://example.com/api/v1/pacs/series/5/", { + token: "abc123", + }), + receivedCount: DEFAULT_STATE.info + .NumberOfSeriesRelatedInstances as number, + }; + render(<SeriesRow {...props} />); + const button = screen.getByRole("button"); + expect(button.getAttribute("color")).toBe("default"); + }); + + it("should be waiting at 99% while CUBE task to register the DICOM series is pending", async () => { + const props = { + ...DEFAULT_STATE, + pullState: SeriesPullState.WAITING_OR_COMPLETE, + inCube: null, + receivedCount: DEFAULT_STATE.info + .NumberOfSeriesRelatedInstances as number, + }; + render(<SeriesRow {...props} />); + const button = screen.getByRole("button"); + expect(button.getAttribute("color")).toBe("default"); + const loadingIcon = screen.getByLabelText("loading"); + expect(button.contains(loadingIcon)).toBe(true); + expect(screen.getByText("99%")).toBeInTheDocument(); + }); +}); diff --git a/src/components/Pacs/components/SeriesRow.tsx b/src/components/Pacs/components/SeriesRow.tsx new file mode 100644 index 000000000..f35b6ddf9 --- /dev/null +++ b/src/components/Pacs/components/SeriesRow.tsx @@ -0,0 +1,155 @@ +import { PacsSeriesState, SeriesPullState } from "../types.ts"; +import React from "react"; +import { isSeriesLoading } from "./helpers.ts"; +import { + Button, + ButtonProps, + Descriptions, + Flex, + Grid, + Progress, + Tooltip, + Typography, +} from "antd"; +import styles from "./SeriesList.module.css"; +import ModalityBadges from "./ModalityBadges.tsx"; +import { ImportOutlined, WarningFilled } from "@ant-design/icons"; + +type SeriesRowProps = PacsSeriesState & { + showUid?: boolean; + onRetrieve?: () => void; +}; + +const SeriesRow: React.FC<SeriesRowProps> = ({ + info, + errors, + pullState, + inCube, + receivedCount, + showUid, + onRetrieve, +}) => { + const isLoading = React.useMemo( + () => isSeriesLoading({ pullState, inCube }), + [pullState, inCube], + ); + + const tooltipTitle = React.useMemo(() => { + if (errors.length > 0) { + return <>Error: {errors[0]}</>; + } + if (pullState === SeriesPullState.NOT_CHECKED) { + return <>Not ready.</>; + } + if (pullState === SeriesPullState.CHECKING) { + return <>Checking availability…</>; + } + if (pullState === SeriesPullState.READY) { + return ( + <> + Pull "{info.SeriesDescription}" into <em>ChRIS</em>. + </> + ); + } + if (pullState === SeriesPullState.PULLING) { + return <>Receiving…</>; + } + if (inCube === null) { + return <>Waiting...</>; + } + return ( + <> + This series is available in <em>ChRIS</em>. + </> + ); + }, [errors, info, pullState, inCube]); + + const buttonColor = React.useMemo((): ButtonProps["color"] => { + if (errors.length > 0) { + return "danger"; + } + if (pullState === SeriesPullState.READY) { + return "primary"; + } + return "default"; + }, [errors, pullState]); + + const percentDone = React.useMemo(() => { + if (inCube) { + return 100; + } + if (pullState === SeriesPullState.WAITING_OR_COMPLETE) { + return 99; + } + return ( + (99 * receivedCount) / + (info.NumberOfSeriesRelatedInstances || Number.POSITIVE_INFINITY) + ); + }, [inCube, pullState, receivedCount, info.NumberOfSeriesRelatedInstances]); + + return ( + <Flex + wrap + vertical={false} + align="center" + justify="space-between" + gap={0} + className={`${styles.seriesRow} ${Grid.useBreakpoint().xl && styles.xl}`} + > + <div className={styles.modality}> + <ModalityBadges modalities={info.Modality} /> + </div> + <div className={styles.description}> + <Typography.Text ellipsis={true}> + {info.SeriesDescription.trim()} + </Typography.Text> + </div> + <div className={styles.fileCount}> + <Typography.Text className={styles.fileCount}> + {info.NumberOfSeriesRelatedInstances === 1 + ? "1 file" + : `${info.NumberOfSeriesRelatedInstances === null ? "?" : info.NumberOfSeriesRelatedInstances} files`} + </Typography.Text> + </div> + <div className={styles.progress}> + <Progress + type="line" + format={(n) => `${Math.round(n ?? 0)}%`} + percent={percentDone} + status={ + errors.length > 0 ? "exception" : inCube ? "success" : "normal" + } + /> + </div> + <div className={styles.pullButton}> + <Tooltip placement="left" title={tooltipTitle}> + <Button + loading={isLoading} + disabled={pullState !== SeriesPullState.READY} + color={buttonColor} + onClick={onRetrieve} + > + {/* TODO Button width is different if isLoading */} + {errors.length > 1 ? ( + <WarningFilled /> + ) : isLoading ? ( + <></> + ) : ( + <ImportOutlined /> + )} + </Button> + </Tooltip> + </div> + {showUid && ( + <Descriptions className={styles.seriesInstanceUid}> + <Descriptions.Item label="SeriesInstanceUID"> + {info.SeriesInstanceUID} + </Descriptions.Item> + </Descriptions> + )} + </Flex> + ); +}; + +export type { SeriesRowProps }; +export default SeriesRow; diff --git a/src/components/Pacs/components/testData/remind.ts b/src/components/Pacs/components/testData/remind.ts new file mode 100644 index 000000000..94de5de7d --- /dev/null +++ b/src/components/Pacs/components/testData/remind.ts @@ -0,0 +1,318 @@ +import { StudyAndSeries } from "../../../../api/pfdcm/models.ts"; + +const REMIND_STUDIES: ReadonlyArray<StudyAndSeries> = [ + { + study: { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + ModalitiesInStudy: "MR\\SEG\\US", + StudyDescription: "Intraop", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.296457429224646492865587946336300319226", + NumberOfStudyRelatedSeries: 7, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + series: [ + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "MR", + StudyDescription: "Intraop", + SeriesDescription: "3D_AX_T1_precontrast", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.296457429224646492865587946336300319226", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.196263483769985307058907929198160856331", + NumberOfSeriesRelatedInstances: 176, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "MR", + StudyDescription: "Intraop", + SeriesDescription: "2D_AX_T2_FLAIR", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.296457429224646492865587946336300319226", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.128134097836608447545606883174310323519", + NumberOfSeriesRelatedInstances: 74, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "US", + StudyDescription: "Intraop", + SeriesDescription: "US_pre_dura", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.296457429224646492865587946336300319226", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.95314485457128412592248919688824142597", + NumberOfSeriesRelatedInstances: 1, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "SEG", + StudyDescription: "Intraop", + SeriesDescription: "tumor_residual seg - MR ref: 2D_AX_T2_FLAIR", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.296457429224646492865587946336300319226", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.206657195335953324371356600554221913476", + NumberOfSeriesRelatedInstances: 1, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "MR", + StudyDescription: "Intraop", + SeriesDescription: "2D_AX_T2_BLADE", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.296457429224646492865587946336300319226", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.150626935733334738403360637524565939970", + NumberOfSeriesRelatedInstances: 70, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "US", + StudyDescription: "Intraop", + SeriesDescription: "US_pre_imri", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.296457429224646492865587946336300319226", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.190917077277426833412602956837317094217", + NumberOfSeriesRelatedInstances: 1, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "US", + StudyDescription: "Intraop", + SeriesDescription: "US_post_dura", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.296457429224646492865587946336300319226", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.339448507477226772617616220052572153109", + NumberOfSeriesRelatedInstances: 1, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + ], + }, + { + study: { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + ModalitiesInStudy: "MR\\SEG", + StudyDescription: "Preop", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.18473209367186901845307845336434276052", + NumberOfStudyRelatedSeries: 4, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + series: [ + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "MR", + StudyDescription: "Preop", + SeriesDescription: "3D_AX_T1_postcontrast", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.18473209367186901845307845336434276052", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.43670003352813769538878303243732046742", + NumberOfSeriesRelatedInstances: 176, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "SEG", + StudyDescription: "Preop", + SeriesDescription: "tumor seg - MR ref: 2D_AX_T2_FLAIR", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.18473209367186901845307845336434276052", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.73475684818739340078664911389232338988", + NumberOfSeriesRelatedInstances: 1, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "MR", + StudyDescription: "Preop", + SeriesDescription: "3D_AX_T2_SPACE", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.18473209367186901845307845336434276052", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.300117359631342126173918428968995787084", + NumberOfSeriesRelatedInstances: 192, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + { + SpecificCharacterSet: "ISO_IR 100", + StudyDate: new Date(1982, 11, 25), + SeriesDate: new Date(2007, 2, 8), + AccessionNumber: "no value provided for 0008,0050", + RetrieveAETitle: "TCIA", + Modality: "MR", + StudyDescription: "Preop", + SeriesDescription: "2D_AX_T2_FLAIR", + PatientName: "ReMIND-042", + PatientID: "ReMIND-042", + PatientBirthDate: null, + PatientSex: "no value provided for 0010,0040", + PatientAge: "no value provided for 0010,1010", + ProtocolName: "no value provided for 0018,1030", + AcquisitionProtocolName: "no value provided for 0018,9423", + AcquisitionProtocolDescription: "no value provided for 0018,9424", + StudyInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.18473209367186901845307845336434276052", + SeriesInstanceUID: + "1.3.6.1.4.1.14519.5.2.1.43182747523173116841423691014813896790", + NumberOfSeriesRelatedInstances: 32, + PerformedStationAETitle: "no value provided for 0040,0241", + }, + ], + }, +]; + +export default REMIND_STUDIES; From 4ede58bf71a90d4bbddfe3212ff24b3e689d9e3e Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 23:35:29 -0400 Subject: [PATCH 301/337] Delete example.test.ts --- src/example.test.ts | 5 ----- 1 file changed, 5 deletions(-) delete mode 100644 src/example.test.ts diff --git a/src/example.test.ts b/src/example.test.ts deleted file mode 100644 index f38c31d12..000000000 --- a/src/example.test.ts +++ /dev/null @@ -1,5 +0,0 @@ -import { test, expect } from "vitest"; - -test("example test, delete me when a real test is added", () => { - expect(1).toBe(1); -}); From 2ca52275f54db545835eb5e71d2faa098159f20e Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 10 Oct 2024 23:42:03 -0400 Subject: [PATCH 302/337] Make CUBE_POLL_INTERVAL_MS configurable via environment variable --- .env | 3 +++ .env.production | 2 ++ docker-entrypoint.sh | 2 ++ src/components/Pacs/PacsController.tsx | 3 ++- 4 files changed, 9 insertions(+), 1 deletion(-) diff --git a/.env b/.env index 778314434..cfc768867 100644 --- a/.env +++ b/.env @@ -35,6 +35,9 @@ VITE_PFDCM_URL="http://localhost:4005" # VITE_ACKEE_SERVER="http://localhost:3050" # VITE_ACKEE_DOMAIN_ID="lol-lol-lol" +# How often to poll CUBE, in milliseconds. +VITE_CUBE_POLL_INTERVAL_MS=2000 + VITE_SOURCEMAP='false' # URI for support requests diff --git a/.env.production b/.env.production index 57e1e9353..d391e4ddd 100644 --- a/.env.production +++ b/.env.production @@ -13,6 +13,8 @@ VITE_OHIF_URL="ea1cf042-73f0-43a1-93da-86ff93e5ac19" VITE_ACKEE_SERVER="79a96963-2e17-405e-94bd-4f2433e5cce8" VITE_ACKEE_DOMAIN_ID="e8fe722b-986c-4aaf-ba04-c10d21e4aca1" +VITE_CUBE_POLL_INTERVAL_MS="ca4bef0b-95c9-4a02-abda-590b51b9b07e" + VITE_ALPHA_FEATURES='production' VITE_SOURCEMAP='false' diff --git a/docker-entrypoint.sh b/docker-entrypoint.sh index eb717cb1d..204de02e4 100755 --- a/docker-entrypoint.sh +++ b/docker-entrypoint.sh @@ -45,6 +45,7 @@ find -type d -exec mkdir -p "$target/{}" \; # set default values CHRIS_STORE_URL="${CHRIS_STORE_URL-https://cube.chrisproject.org/api/v1/}" +CUBE_POLL_INTERVAL_MS="${CUBE_POLL_INTERVAL_MS-2000}" # OHIF_URL, ACKEE_SERVER, ACKEE_DOMAIN_ID default values are empty # required values @@ -66,6 +67,7 @@ find -type f -exec sh -c "cat '{}' \ | sed 's#$VITE_OHIF_URL#$OHIF_URL#g' \ | sed 's#$VITE_ACKEE_SERVER#$ACKEE_SERVER#g' \ | sed 's#$VITE_ACKEE_DOMAIN_ID#$ACKEE_DOMAIN_ID#g' \ + | sed 's#$VITE_CUBE_POLL_INTERVAL_MS#$CUBE_POLL_INTERVAL_MS#g' \ > $target/{}" \; # run specified command diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index 6354d42c0..5d93388ba 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -316,7 +316,8 @@ const PacsController: React.FC<PacsControllerProps> = ({ }, enabled: state.done, retry: 300, - retryDelay: 2000, // TODO use environment variable + retryDelay: + parseInt(import.meta.env.VITE_CUBE_POLL_INTERVAL_MS) || 2000, })), [receiveState, chrisClient.getPACSSeriesList], ), From 909518c1bc15b4217f42cf71bffc75226c8b49ca Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Mon, 14 Oct 2024 14:27:21 -0400 Subject: [PATCH 303/337] feat: Cleaner and maintenable d3 tree --- src/components/FeedTree/Controls.tsx | 9 +- src/components/FeedTree/FeedGraph.tsx | 14 +- src/components/FeedTree/FeedTree.tsx | 496 +++++++++--------- src/components/FeedTree/Node.tsx | 23 +- src/components/FeedTree/ParentComponent.tsx | 29 +- .../FeedTree/TransitionGroupWrapper.tsx | 2 +- src/components/FeedTree/data.ts | 75 +-- src/components/Feeds/FeedView.tsx | 20 +- .../NewLibrary/components/LibraryTable.tsx | 4 +- src/components/PipelinesCopy/Tree.tsx | 5 +- src/store/feed/feedSlice.ts | 42 +- src/store/feed/types.ts | 15 - 12 files changed, 325 insertions(+), 409 deletions(-) diff --git a/src/components/FeedTree/Controls.tsx b/src/components/FeedTree/Controls.tsx index 055c49e4c..39494dc69 100644 --- a/src/components/FeedTree/Controls.tsx +++ b/src/components/FeedTree/Controls.tsx @@ -1,11 +1,12 @@ import { + MenuToggle, + type MenuToggleElement, Select, SelectList, SelectOption, - MenuToggle, - MenuToggleElement, } from "@patternfly/react-core"; -import React, { useState } from "react"; +import type React from "react"; +import { useState } from "react"; export type FeedTreeScaleType = "time" | "size"; @@ -49,7 +50,7 @@ export const NodeScaleDropdown = ({ isOpen={open} onSelect={(_: any, label: any) => { const type = Array.from(labels.keys()).find( - (type) => labels.get(type) == label, + (type) => labels.get(type) === label, ); if (type) { onChange(type); diff --git a/src/components/FeedTree/FeedGraph.tsx b/src/components/FeedTree/FeedGraph.tsx index 30bb39981..aa9e0f1b4 100644 --- a/src/components/FeedTree/FeedGraph.tsx +++ b/src/components/FeedTree/FeedGraph.tsx @@ -16,11 +16,15 @@ import useSize from "./useSize"; interface IFeedProps { onNodeClick: (node: PluginInstance) => void; + currentLayout: boolean; + changeLayout: () => void; } -const FeedGraph: React.FC<IFeedProps> = ({ onNodeClick }) => { - const dispatch = useAppDispatch(); - const currentLayout = useAppSelector((state) => state.feed.currentLayout); +const FeedGraph: React.FC<IFeedProps> = ({ + onNodeClick, + currentLayout, + changeLayout, +}) => { const pluginInstances = useAppSelector( (state) => state.instance.pluginInstances, ); @@ -118,9 +122,7 @@ const FeedGraph: React.FC<IFeedProps> = ({ onNodeClick }) => { label="3D" labelOff="2D" isChecked={currentLayout} - onChange={() => { - dispatch(setFeedLayout()); - }} + onChange={changeLayout} /> </div> </div> diff --git a/src/components/FeedTree/FeedTree.tsx b/src/components/FeedTree/FeedTree.tsx index 758e10f55..87081b40a 100644 --- a/src/components/FeedTree/FeedTree.tsx +++ b/src/components/FeedTree/FeedTree.tsx @@ -1,3 +1,4 @@ +import type { PluginInstance } from "@fnndsc/chrisapi"; import { Switch, TextInput } from "@patternfly/react-core"; import { type HierarchyPointLink, @@ -5,139 +6,135 @@ import { hierarchy, tree, } from "d3-hierarchy"; -import { type Selection, select } from "d3-selection"; +import { select } from "d3-selection"; import { type ZoomBehavior, zoom as d3Zoom, zoomIdentity } from "d3-zoom"; -import { isEqual } from "lodash"; -import React, { - useCallback, - useContext, - useEffect, - useRef, - useState, -} from "react"; -import { - setFeedLayout, - setSearchFilter, - setTranslate, -} from "../../store/feed/feedSlice"; -import type { FeedTreeProp } from "../../store/feed/types"; -import { useAppDispatch, useAppSelector } from "../../store/hooks"; +import { useContext, useEffect, useRef, useCallback } from "react"; +import { useImmer } from "use-immer"; import { ThemeContext } from "../DarkTheme/useTheme"; import { RotateLeft, RotateRight } from "../Icons"; import { type FeedTreeScaleType, NodeScaleDropdown } from "./Controls"; import Link from "./Link"; import NodeWrapper from "./Node"; +import type { TSID } from "./ParentComponent"; import TransitionGroupWrapper from "./TransitionGroupWrapper"; -import type TreeNodeDatum from "./data"; -import type { OwnProps, Point } from "./data"; +import type { TreeNodeDatum } from "./data"; import useSize from "./useSize"; -type FeedTreeFeature = - | "scale_enabled" - | "scale_type" - | "collapsible" - | "toggleLabel" - | "search"; - -type FeedTreeState = { - d3: { - translate: Point; - scale: number; - }; +// Constants +const NODE_SIZE = { x: 120, y: 80 }; +const SCALE_EXTENT = { min: 0.1, max: 1.5 }; +const INITIAL_SCALE = 1; +const SEPARATION = { + siblings: 0.75, + nonSiblings: 2.0, +}; +const SVG_CLASS_NAME = "feed-tree__svg"; +const GRAPH_CLASS_NAME = "feed-tree__graph"; + +// Feature Enum for Switch Controls +enum Feature { + TOGGLE_LABELS = "toggleLabels", + SCALE_ENABLED = "scale_enabled", + SCALE_TYPE = "scale_type", + ORIENTATION = "orientation", + SEARCH_BOX = "searchBox", +} + +// Interface Definitions +interface FeedTreeProps { + onNodeClick: (node: PluginInstance) => void; + tsIds?: TSID; + data: TreeNodeDatum[]; + changeLayout: () => void; + currentLayout: boolean; +} + +interface State { overlayScale: { enabled: boolean; type: FeedTreeScaleType; }; - collapsible: boolean; - toggleLabel: boolean; - search: boolean; -}; - -function calculateD3Geometry(nextProps: OwnProps, feedTreeProp: FeedTreeProp) { - let scale = nextProps.zoom; - if (nextProps.zoom > nextProps.scaleExtent.max) { - scale = nextProps.scaleExtent.max; - } else if (nextProps.zoom < nextProps.scaleExtent.min) { - scale = nextProps.scaleExtent.min; - } - return { - translate: feedTreeProp.translate, - scale, + switchState: { + toggleLabels: boolean; + searchBox: boolean; + searchFilter: string; + orientation: "vertical" | "horizontal"; }; -} - -function getInitialState( - props: OwnProps, - feedTreeProp: FeedTreeProp, -): FeedTreeState { - return { - d3: calculateD3Geometry(props, feedTreeProp), - overlayScale: { - enabled: false, - type: "time", - }, - collapsible: false, - toggleLabel: false, - search: false, + treeState: { + translate: { + x: number; + y: number; + }; }; } -const svgClassName = "feed-tree__svg"; -const graphClassName = "feed-tree__graph"; +// Initial State Function +const getInitialState = (): State => ({ + overlayScale: { + enabled: false, + type: "time", + }, + switchState: { + toggleLabels: false, + searchBox: false, + searchFilter: "", + orientation: "vertical", + }, + treeState: { + translate: { + x: 0, + y: 0, + }, + }, +}); -const FeedTree: React.FC<OwnProps> = ({ - data, - zoom = 1, - scaleExtent = { min: 0.1, max: 1.5 }, - nodeSize = { x: 120, y: 80 }, - separation, - tsIds, - changeOrientation, +// FeedTree Component +const FeedTree = ({ onNodeClick, -}) => { - const { isDarkTheme } = useContext(ThemeContext); - const dispatch = useAppDispatch(); + tsIds, + data, + changeLayout, + currentLayout, +}: FeedTreeProps) => { const divRef = useRef<HTMLDivElement>(null); - const { feedTreeProp, currentLayout, searchFilter } = useAppSelector( - (state) => state.feed, - ); - const [feedTree, setFeedTree] = useState<{ - nodes?: HierarchyPointNode<TreeNodeDatum>[]; - links?: HierarchyPointLink<TreeNodeDatum>[]; - }>({ - nodes: [], - links: [], - }); const size = useSize(divRef); - const { translate, orientation } = feedTreeProp; - const [feedState, setFeedState] = useState<FeedTreeState>( - getInitialState( - { - data, - zoom, - scaleExtent, - nodeSize, - separation, - tsIds, - changeOrientation, - onNodeClick, - }, - feedTreeProp, - ), + const [state, updateState] = useImmer(getInitialState()); + const { treeState, switchState, overlayScale } = state; + const { isDarkTheme } = useContext(ThemeContext); + + // Refs for SVG and G elements + const svgRef = useRef<SVGSVGElement>(null); + const gRef = useRef<SVGGElement>(null); + const zoomBehaviorRef = useRef<ZoomBehavior<SVGSVGElement, unknown> | null>( + null, ); - const { scale } = feedState.d3; + + // Update Tree Translation based on Size and Orientation + useEffect(() => { + if (size?.width && size.height) { + updateState((draft) => { + if (switchState.orientation === "vertical") { + draft.treeState.translate = { x: size.width / 2, y: 90 }; + } else { + draft.treeState.translate = { x: 180, y: size.height / 3 }; + } + }); + } + }, [size, updateState, switchState.orientation]); + + // Generate Tree Structure const generateTree = useCallback( (data: TreeNodeDatum[]) => { const d3Tree = tree<TreeNodeDatum>() .nodeSize( - orientation === "horizontal" - ? [nodeSize.y, nodeSize.x] - : [nodeSize.x, nodeSize.y], + switchState.orientation === "horizontal" + ? [NODE_SIZE.y, NODE_SIZE.x] + : [NODE_SIZE.x, NODE_SIZE.y], ) .separation((a, b) => a.data.parentId === b.data.parentId - ? separation.siblings - : separation.nonSiblings, + ? SEPARATION.siblings + : SEPARATION.nonSiblings, ); let nodes: HierarchyPointNode<TreeNodeDatum>[] | undefined; @@ -208,110 +205,79 @@ const FeedTree: React.FC<OwnProps> = ({ return { nodes, newLinks }; }, - [nodeSize, orientation, separation, tsIds], + [switchState.orientation, tsIds], ); - useEffect(() => { - if (size?.width) { - if (orientation === "vertical") { - dispatch(setTranslate({ x: size.width / 2, y: 90 })); - } else { - dispatch(setTranslate({ x: 180, y: size.height / 3 })); - } - } - }, [size, orientation, dispatch]); + // Generate Nodes and Links + const { nodes, newLinks: links } = generateTree(data); - useEffect(() => { - if (data && data.length > 0) { - const { nodes, newLinks: links } = generateTree(data); - setFeedTree({ nodes, links }); - } - }, [data, generateTree]); - - const bindZoomListener = () => { - const svg: Selection<SVGSVGElement, unknown, HTMLElement, any> = select( - `.${svgClassName}`, - ); - const g: Selection<SVGGElement, unknown, HTMLElement, any> = select( - `.${graphClassName}`, - ); - const zoomBehavior: ZoomBehavior<SVGSVGElement, unknown> = d3Zoom< - SVGSVGElement, - unknown - >() - .scaleExtent([scaleExtent.min, scaleExtent.max]) - .on("zoom", (event) => { - g.attr("transform", event.transform); - }); + // Handle Switch Changes + const handleChange = (feature: Feature, data?: any) => { + updateState((draft) => { + switch (feature) { + case Feature.TOGGLE_LABELS: + draft.switchState.toggleLabels = !draft.switchState.toggleLabels; + break; - svg - .call(zoomBehavior) - .call( - zoomBehavior.transform, - zoomIdentity.translate(translate.x, translate.y).scale(scale), - ); - }; + case Feature.SCALE_ENABLED: + draft.overlayScale.enabled = !draft.overlayScale.enabled; + break; - useEffect(() => { - bindZoomListener(); - }, []); + case Feature.SCALE_TYPE: + draft.overlayScale.type = data; + break; + + case Feature.ORIENTATION: + draft.switchState.orientation = data; + break; + + case Feature.SEARCH_BOX: + draft.switchState.searchBox = !draft.switchState.searchBox; + break; - const handleChange = useCallback((feature: FeedTreeFeature, data?: any) => { - setFeedState((prevState) => { - switch (feature) { - case "scale_enabled": - return { - ...prevState, - overlayScale: { - ...prevState.overlayScale, - enabled: !prevState.overlayScale.enabled, - }, - }; - case "scale_type": - return { - ...prevState, - overlayScale: { - ...prevState.overlayScale, - type: data as FeedTreeScaleType, - }, - }; - case "collapsible": - case "toggleLabel": - case "search": - return { - ...prevState, - [feature]: !prevState[feature], - }; default: - return prevState; + break; } }); - }, []); + }; - const handleNodeClick = useCallback( - (item: any) => { - onNodeClick(item); - }, - [onNodeClick], - ); + // Bind and Update Zoom Listener + const bindZoomListener = useCallback(() => { + if (!svgRef.current || !gRef.current) return; + + // Initialize Zoom Behavior if not already initialized + if (!zoomBehaviorRef.current) { + const zoomBehavior = d3Zoom<SVGSVGElement, unknown>() + .scaleExtent([SCALE_EXTENT.min, SCALE_EXTENT.max]) + .on("zoom", (event) => { + gRef.current?.setAttribute("transform", event.transform.toString()); + }); + + zoomBehaviorRef.current = zoomBehavior; + select(svgRef.current).call( + zoomBehavior, + zoomIdentity + .translate(treeState.translate.x, treeState.translate.y) + .scale(INITIAL_SCALE), + ); + } + }, [treeState.translate.x, treeState.translate.y]); - const { nodes, links } = feedTree; + // Initialize and Update Zoom Listener whenever translate changes + useEffect(() => { + bindZoomListener(); + }, [bindZoomListener]); return ( <div className="feed-tree setFlex grabbable mode_tree" ref={divRef}> - <div className="feed-tree__container"> + <div> + {/* Controls Section */} <div className="feed-tree__container--labels"> - <div - onClick={() => changeOrientation(orientation)} - className="feed-tree__orientation" - onKeyDown={(e) => { - if (e.key === "Enter" || e.key === " ") { - changeOrientation(orientation); - } - }} - > - {orientation === "vertical" ? ( + {/* Orientation Toggle */} + <div className="feed-tree__orientation"> + {switchState.orientation === "vertical" ? ( <RotateLeft + onClick={() => handleChange(Feature.ORIENTATION, "horizontal")} className="feed-tree__orientation--icon" aria-label="Rotate Left" aria-hidden="true" @@ -321,22 +287,25 @@ const FeedTree: React.FC<OwnProps> = ({ className="feed-tree__orientation--icon" aria-label="Rotate Right" aria-hidden="true" + onClick={() => handleChange(Feature.ORIENTATION, "vertical")} /> )} </div> + {/* Toggle Labels Switch */} <div className="feed-tree__control"> <Switch id="labels" label="Hide Labels" labelOff="Show Labels" - isChecked={feedState.toggleLabel} - aria-checked={feedState.toggleLabel} - onChange={() => handleChange("toggleLabel")} + isChecked={switchState.toggleLabels} + aria-checked={switchState.toggleLabels} + onChange={() => handleChange(Feature.TOGGLE_LABELS)} aria-label="Toggle label visibility" /> </div> + {/* Switch Layout Toggle */} <div className="feed-tree__control"> <Switch id="layout" @@ -344,109 +313,116 @@ const FeedTree: React.FC<OwnProps> = ({ labelOff="2D" isChecked={currentLayout} aria-checked={currentLayout} - onChange={() => dispatch(setFeedLayout())} + onChange={() => changeLayout()} aria-label="Toggle graph layout from 2D to 3D" /> </div> + {/* Scale Nodes Switch and Dropdown */} <div className="feed-tree__control feed-tree__individual-scale"> <Switch id="individual-scale" label="Scale Nodes On" labelOff="Scale Nodes Off" - isChecked={feedState.overlayScale.enabled} - aria-checked={feedState.overlayScale.enabled} - onChange={() => handleChange("scale_enabled")} + isChecked={overlayScale.enabled} + aria-checked={overlayScale.enabled} + onChange={() => handleChange(Feature.SCALE_ENABLED)} aria-label="Scale nodes" /> - {feedState.overlayScale.enabled && ( + {overlayScale.enabled && ( <div className="dropdown-wrap"> <NodeScaleDropdown - selected={feedState.overlayScale.type} - onChange={(type) => handleChange("scale_type", type)} + selected={overlayScale.type} + onChange={(type) => handleChange(Feature.SCALE_TYPE, type)} /> </div> )} </div> + {/* Search Box Switch */} <div className="feed-tree__control"> <Switch id="search" label="Search On" labelOff="Search Off" - isChecked={feedState.search} - aria-checked={feedState.search} - onChange={() => handleChange("search")} + isChecked={switchState.searchBox} + aria-checked={switchState.searchBox} + onChange={() => handleChange(Feature.SEARCH_BOX)} aria-label="Toggle search a node in the tree" /> </div> + {/* Search Input */} <div className="feed-tree__control"> - {feedState.search && ( + {switchState.searchBox && ( <TextInput - value={searchFilter.value} - onChange={(_, value: string) => - dispatch(setSearchFilter(value.trim())) + value={switchState.searchFilter} + onChange={(_event, value: string) => + updateState((draft) => { + draft.switchState.searchFilter = value; + }) } + aria-label="Search nodes" + placeholder="Search..." /> )} </div> </div> - </div> - {translate.x > 0 && translate.y > 0 && ( - <svg - focusable="true" - className={svgClassName} - width="100%" - height="100%" - role="img" - aria-label="Feed Tree Visualization" - > - <TransitionGroupWrapper - component="g" - className={graphClassName} - transform={`translate(${translate.x},${translate.y}) scale(${scale})`} + {/* Tree Visualization */} + {treeState.translate.x > 0 && treeState.translate.y > 0 && ( + <svg + ref={svgRef} + focusable="true" + className={SVG_CLASS_NAME} + width="100%" + height="100%" + role="img" + aria-label="Feed Tree Visualization" > - {links?.map((linkData, i) => ( - <Link - key={`link${i}`} - orientation={orientation} - linkData={linkData} - isDarkTheme={isDarkTheme} - /> - ))} - - {nodes?.map(({ data, x, y, parent }) => ( - <NodeWrapper - key={`node${data.id}`} - data={data} - position={{ x, y }} - parent={parent} - onNodeClick={handleNodeClick} - orientation={orientation} - toggleLabel={feedState.toggleLabel} - overlayScale={ - feedState.overlayScale.enabled - ? feedState.overlayScale.type - : undefined - } - /> - ))} - </TransitionGroupWrapper> - </svg> - )} + <g ref={gRef} className={GRAPH_CLASS_NAME}> + <TransitionGroupWrapper + className={GRAPH_CLASS_NAME} + component="g" + transform={`translate(${treeState.translate.x},${treeState.translate.y}) scale(${INITIAL_SCALE})`} + > + {/* Render Links */} + {links?.map((linkData, i) => ( + <Link + key={`link${ + // biome-ignore lint/suspicious/noArrayIndexKey: <explanation> + i + }`} + orientation={switchState.orientation} + linkData={linkData} + isDarkTheme={isDarkTheme} + /> + ))} + + {/* Render Nodes */} + {nodes?.map(({ data, x, y, parent }) => ( + <NodeWrapper + key={`node${data.id}`} + data={data} + position={{ x, y }} + parent={parent} + onNodeClick={(item) => onNodeClick(item)} + orientation={switchState.orientation} + toggleLabel={switchState.toggleLabels} + overlayScale={ + overlayScale.enabled ? overlayScale.type : undefined + } + searchFilter={switchState.searchFilter} + /> + ))} + </TransitionGroupWrapper> + </g> + </svg> + )} + </div> </div> ); }; -const FeedTreeMemoed = React.memo( - FeedTree, - (prevProps: OwnProps, nextProps: OwnProps) => - isEqual(prevProps.data, nextProps.data) && - prevProps.zoom === nextProps.zoom && - isEqual(prevProps.tsIds, nextProps.tsIds), -); - -export default FeedTreeMemoed; +export default FeedTree; diff --git a/src/components/FeedTree/Node.tsx b/src/components/FeedTree/Node.tsx index 83a207b82..8d0a8d76d 100644 --- a/src/components/FeedTree/Node.tsx +++ b/src/components/FeedTree/Node.tsx @@ -26,8 +26,7 @@ import DeleteNode from "../DeleteNode"; import { PipelineProvider } from "../PipelinesCopy/context"; import type { FeedTreeScaleType } from "./Controls"; import DropdownMenu from "./DropdownMenu"; -import type TreeNodeDatum from "./data"; -import type { Point } from "./data"; +import type { Point, TreeNodeDatum } from "./data"; type NodeWrapperProps = { tsNodes?: PluginInstance[]; @@ -38,6 +37,7 @@ type NodeWrapperProps = { orientation: "horizontal" | "vertical"; overlayScale?: FeedTreeScaleType; toggleLabel: boolean; + searchFilter: string; }; type NodeProps = NodeWrapperProps & { @@ -70,6 +70,7 @@ const Node = (props: NodeProps) => { status, currentId, overlaySize, + searchFilter, } = props; const [api, contextHolder] = notification.useNotification(); @@ -81,8 +82,6 @@ const Node = (props: NodeProps) => { const selectedPlugin = useAppSelector((state) => { return state.instance.selectedPlugin; }); - const searchFilter = useAppSelector((state) => state.feed.searchFilter); - const { value } = searchFilter; const applyNodeTransform = useCallback((transform: string, opacity = 1) => { select(nodeRef.current) @@ -120,9 +119,11 @@ const Node = (props: NodeProps) => { } if ( - value.length > 0 && - (data.item?.data.plugin_name?.toLowerCase().includes(value.toLowerCase()) || - data.item?.data.title?.toLowerCase().includes(value.toLowerCase())) + searchFilter.length > 0 && + (data.item?.data.plugin_name + ?.toLowerCase() + .includes(searchFilter.toLowerCase()) || + data.item?.data.title?.toLowerCase().includes(searchFilter.toLowerCase())) ) { statusClass = "search"; } @@ -225,7 +226,13 @@ const Node = (props: NodeProps) => { message: "Preparing to initiate the zipping process...", }); } - }, [api, mutation.isSuccess, mutation.isError, mutation.isPending]); + }, [ + api, + mutation.error, + mutation.isSuccess, + mutation.isError, + mutation.isPending, + ]); const textLabel = ( <g diff --git a/src/components/FeedTree/ParentComponent.tsx b/src/components/FeedTree/ParentComponent.tsx index 8d9092b00..9d5a49627 100644 --- a/src/components/FeedTree/ParentComponent.tsx +++ b/src/components/FeedTree/ParentComponent.tsx @@ -1,15 +1,16 @@ import React from "react"; -import { setFeedTreeProp } from "../../store/feed/feedSlice"; -import { useAppDispatch, useAppSelector } from "../../store/hooks"; +import { useAppSelector } from "../../store/hooks"; import { Alert } from "../Antd"; import { SpinContainer } from "../Common"; import FeedTree from "./FeedTree"; -import type TreeNodeDatum from "./data"; +import type { TreeNodeDatum } from "./data"; import { getFeedTree, getTsNodes } from "./data"; import "./FeedTree.css"; interface ParentComponentProps { onNodeClick: (node: any) => void; + changeLayout: () => void; + currentLayout: boolean; } export type TSID = { @@ -17,20 +18,18 @@ export type TSID = { }; const ParentComponent = (props: ParentComponentProps) => { - const { onNodeClick } = props; + const { onNodeClick, changeLayout, currentLayout } = props; const pluginInstances = useAppSelector( (state) => state.instance.pluginInstances, ); const { data: instances, error, loading } = pluginInstances; const [data, setData] = React.useState<TreeNodeDatum[]>([]); const [tsIds, setTsIds] = React.useState<TSID>(); - const dispatch = useAppDispatch(); React.useEffect(() => { if (instances && instances.length > 0) { const data = getFeedTree(instances); - //Get Topological joins as well getTsNodes(instances).then((nodes) => { setTsIds(nodes); }); @@ -38,27 +37,13 @@ const ParentComponent = (props: ParentComponentProps) => { } }, [instances]); - const changeOrientation = (orientation: string) => { - dispatch(setFeedTreeProp(orientation)); - }; - return data && data.length > 0 ? ( <FeedTree data={data} tsIds={tsIds} onNodeClick={onNodeClick} - separation={ - instances && instances.length > 15 - ? { - siblings: 1.0, - nonSiblings: 2.0, - } - : { - siblings: 0.75, - nonSiblings: 1.0, - } - } - changeOrientation={changeOrientation} + changeLayout={changeLayout} + currentLayout={currentLayout} /> ) : loading ? ( <SpinContainer title="Loading the tree" /> diff --git a/src/components/FeedTree/TransitionGroupWrapper.tsx b/src/components/FeedTree/TransitionGroupWrapper.tsx index 1acf8ab16..d66ec7da3 100644 --- a/src/components/FeedTree/TransitionGroupWrapper.tsx +++ b/src/components/FeedTree/TransitionGroupWrapper.tsx @@ -1,4 +1,4 @@ -import React from "react"; +import type React from "react"; import Marker from "./Marker"; type TransitionGroupWrapperProps = { diff --git a/src/components/FeedTree/data.ts b/src/components/FeedTree/data.ts index e29fd07fe..f440b6b8e 100644 --- a/src/components/FeedTree/data.ts +++ b/src/components/FeedTree/data.ts @@ -20,13 +20,8 @@ export interface Point { y: number; } -export default interface TreeNodeDatum extends Datum { +export interface TreeNodeDatum extends Datum { children: TreeNodeDatum[]; - __rd3t: { - id: string; - depth: number; - collapsed: boolean; - }; } export interface Separation { @@ -34,58 +29,46 @@ export interface Separation { nonSiblings: number; } -export interface OwnProps { - tsIds?: TSID; - data: TreeNodeDatum[]; - onNodeClick: (node: any) => void; - translate?: Point; - scaleExtent: { - min: number; - max: number; - }; - zoom: number; - nodeSize: { - x: number; - y: number; - }; - separation: Separation; - changeOrientation: (orientation: string) => void; -} - export const getFeedTree = (items: PluginInstance[]) => { - const tree = []; - const mappedArr: { - [key: string]: TreeNodeDatum; - } = {}; + const tree: TreeNodeDatum[] = []; - for (const item of items) { - const id = item.data.id; + const mappedArr = new Map<number, TreeNodeDatum>(); + const childrenMap = new Map<number, TreeNodeDatum[]>(); - mappedArr[id] = { + items.forEach((item) => { + const id = item.data.id; + const previous_id: number | null = + item.data.previous_id !== undefined ? item.data.previous_id : null; + const node: TreeNodeDatum = { id: id, name: item.data.title || item.data.plugin_name, parentId: item.data.previous_id, item: item, children: [], - __rd3t: { - id: "", - depth: 0, - collapsed: false, - }, }; - } - - for (const id in mappedArr) { - const mappedElem = mappedArr[id]; - if (mappedElem.parentId) { - const parentId = mappedElem.parentId; - if (parentId && mappedArr[parentId] && mappedArr[parentId].children) - mappedArr[parentId].children.push(mappedElem); + mappedArr.set(id, node); + if (previous_id !== null) { + const parentNode = mappedArr.get(previous_id); + if (parentNode) { + parentNode.children.push(node); + } else { + // If parent hasn't been processed yet, store the child in childrenMap + if (!childrenMap.has(previous_id)) { + childrenMap.set(previous_id, []); + } + childrenMap.get(previous_id)!.push(node); + } } else { - tree.push(mappedElem); + tree.push(node); } - } + if (childrenMap.has(id)) { + // If there are children waiting for this node, add them + const children = childrenMap.get(id)!; + node.children.push(...children); + childrenMap.delete(id); + } + }); return tree; }; diff --git a/src/components/Feeds/FeedView.tsx b/src/components/Feeds/FeedView.tsx index c8945dec4..de5f35933 100644 --- a/src/components/Feeds/FeedView.tsx +++ b/src/components/Feeds/FeedView.tsx @@ -2,7 +2,7 @@ import type { Feed, PluginInstance } from "@fnndsc/chrisapi"; import { Tooltip } from "@patternfly/react-core"; import { PanelGroup, Panel, PanelResizeHandle } from "react-resizable-panels"; import { Typography } from "antd"; -import React, { useCallback, useEffect, useRef } from "react"; +import React, { useCallback, useEffect, useRef, useState } from "react"; import { useLocation, useNavigate, useParams } from "react-router"; import { elipses } from "../../api/common"; import type { IDrawerState } from "../../store/drawer/drawerSlice"; @@ -36,8 +36,8 @@ import "./Feeds.css"; // Import your CSS file const { Title } = Typography; const FeedView: React.FC = () => { + const [currentLayout, setCurrentLayout] = useState(false); const drawerState = useAppSelector((state) => state.drawers); - const { currentLayout } = useAppSelector((state) => state.feed); const dispatch = useAppDispatch(); const query = useSearchQueryParams(); const type = query.get("type"); @@ -115,6 +115,10 @@ const FeedView: React.FC = () => { [drawerState, dispatch], ); + const changeLayout = () => { + setCurrentLayout(!currentLayout); + }; + const TitleComponent = ( <Title level={4} style={{ marginBottom: 0, color: "white" }}> <CodeBranchIcon style={{ marginRight: "0.25em" }} /> @@ -150,9 +154,17 @@ const FeedView: React.FC = () => { > {handleDrawerAction("graph")} {!currentLayout ? ( - <ParentComponent onNodeClick={onNodeClick} /> + <ParentComponent + onNodeClick={onNodeClick} + changeLayout={changeLayout} + currentLayout={currentLayout} + /> ) : ( - <FeedGraph onNodeClick={onNodeClick} /> + <FeedGraph + currentLayout={currentLayout} + changeLayout={changeLayout} + onNodeClick={onNodeClick} + /> )} </Panel> <PanelResizeHandle className="ResizeHandle" /> diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index f5822eccc..0c7ed67cb 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -187,7 +187,9 @@ export const FolderRow: React.FC<Omit<RowProps, "type">> = (props) => { if (isLoading) { return ( <Tr> - <Skeleton width="100%" /> + <Td> + <Skeleton width="100%" /> + </Td> </Tr> ); } diff --git a/src/components/PipelinesCopy/Tree.tsx b/src/components/PipelinesCopy/Tree.tsx index 846ec7a6d..9c647f44b 100644 --- a/src/components/PipelinesCopy/Tree.tsx +++ b/src/components/PipelinesCopy/Tree.tsx @@ -107,15 +107,12 @@ const Tree = (props: TreeProps) => { setData(tree); setLoading(false); } - }, [selectedPipeline?.[currentPipeline.data.id]]); + }, [currentPipeline.data.id, selectedPipeline?.[currentPipeline.data.id]]); React.useEffect(() => { - //@ts-ignore if (size?.width) { setTranslate({ - //@ts-ignore x: size.width / 2.5, - //@ts-ignore y: size.height / 6.5, }); } diff --git a/src/store/feed/feedSlice.ts b/src/store/feed/feedSlice.ts index e7c9eecbe..69d36a3e9 100644 --- a/src/store/feed/feedSlice.ts +++ b/src/store/feed/feedSlice.ts @@ -9,18 +9,6 @@ const initialState: IFeedState = { error: "", loading: false, }, - currentLayout: false, - feedTreeProp: { - orientation: "vertical", - translate: { - x: 0, - y: 0, - }, - }, - searchFilter: { - value: "", - status: false, - }, showToolbar: false, }; @@ -34,40 +22,18 @@ const feedSlice = createSlice({ state.currentFeed.error = ""; state.currentFeed.loading = false; }, - setFeedTreeProp(state, action: PayloadAction<string>) { - const currentOrientation = action.payload; - state.feedTreeProp.orientation = - currentOrientation === "horizontal" ? "vertical" : "horizontal"; - }, - setTranslate(state, action: PayloadAction<{ x: number; y: number }>) { - state.feedTreeProp.translate = action.payload; - }, - setFeedLayout(state) { - state.currentLayout = !state.currentLayout; + setShowToolbar(state, action: PayloadAction<boolean>) { + state.showToolbar = action.payload; }, + resetFeed(_state) { return initialState; }, - setSearchFilter(state, action: PayloadAction<string>) { - state.searchFilter.value = action.payload; - state.searchFilter.status = !state.searchFilter.status; - }, - setShowToolbar(state, action: PayloadAction<boolean>) { - state.showToolbar = action.payload; - }, }, }); // Export the actions -export const { - getFeedSuccess, - setFeedTreeProp, - setTranslate, - setFeedLayout, - resetFeed, - setSearchFilter, - setShowToolbar, -} = feedSlice.actions; +export const { getFeedSuccess, resetFeed, setShowToolbar } = feedSlice.actions; // Export the reducer export default feedSlice.reducer; diff --git a/src/store/feed/types.ts b/src/store/feed/types.ts index 0350921bd..bb268b968 100644 --- a/src/store/feed/types.ts +++ b/src/store/feed/types.ts @@ -18,26 +18,11 @@ export interface FeedsResponsePayload { totalCount: number; } -export interface FeedTreeProp { - orientation: "horizontal" | "vertical"; - translate: { - x: number; - y: number; - }; -} - export interface FeedResource { [id: string]: { details: any }; } export interface IFeedState { currentFeed: FeedPayload; - feedTreeProp: FeedTreeProp; - currentLayout: boolean; - - searchFilter: { - status: boolean; - value: string; - }; showToolbar: boolean; } From aa0f978b5c6ad2731c27dab468238d6b9903bafd Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 15 Oct 2024 16:08:29 -0400 Subject: [PATCH 304/337] fix: Resize the terminal correctly --- src/components/FeedTree/FeedTree.tsx | 290 ++++++++++----------- src/components/Feeds/FeedView.tsx | 3 + src/components/NodeDetails/LogTerminal.tsx | 59 +---- src/components/NodeDetails/NodeDetails.css | 12 + 4 files changed, 170 insertions(+), 194 deletions(-) diff --git a/src/components/FeedTree/FeedTree.tsx b/src/components/FeedTree/FeedTree.tsx index 87081b40a..dab940c6e 100644 --- a/src/components/FeedTree/FeedTree.tsx +++ b/src/components/FeedTree/FeedTree.tsx @@ -142,9 +142,7 @@ const FeedTree = ({ let newLinks: HierarchyPointLink<TreeNodeDatum>[] = []; if (data && data.length > 0) { - const rootNode = d3Tree( - hierarchy(data[0], (d) => (d.__rd3t?.collapsed ? null : d.children)), - ); + const rootNode = d3Tree(hierarchy(data[0], (d) => d.children)); nodes = rootNode.descendants(); links = rootNode.links(); @@ -270,157 +268,155 @@ const FeedTree = ({ return ( <div className="feed-tree setFlex grabbable mode_tree" ref={divRef}> - <div> - {/* Controls Section */} - <div className="feed-tree__container--labels"> - {/* Orientation Toggle */} - <div className="feed-tree__orientation"> - {switchState.orientation === "vertical" ? ( - <RotateLeft - onClick={() => handleChange(Feature.ORIENTATION, "horizontal")} - className="feed-tree__orientation--icon" - aria-label="Rotate Left" - aria-hidden="true" - /> - ) : ( - <RotateRight - className="feed-tree__orientation--icon" - aria-label="Rotate Right" - aria-hidden="true" - onClick={() => handleChange(Feature.ORIENTATION, "vertical")} - /> - )} - </div> - - {/* Toggle Labels Switch */} - <div className="feed-tree__control"> - <Switch - id="labels" - label="Hide Labels" - labelOff="Show Labels" - isChecked={switchState.toggleLabels} - aria-checked={switchState.toggleLabels} - onChange={() => handleChange(Feature.TOGGLE_LABELS)} - aria-label="Toggle label visibility" + {/* Controls Section */} + <div className="feed-tree__container--labels"> + {/* Orientation Toggle */} + <div className="feed-tree__orientation"> + {switchState.orientation === "vertical" ? ( + <RotateLeft + onClick={() => handleChange(Feature.ORIENTATION, "horizontal")} + className="feed-tree__orientation--icon" + aria-label="Rotate Left" + aria-hidden="true" /> - </div> - - {/* Switch Layout Toggle */} - <div className="feed-tree__control"> - <Switch - id="layout" - label="Switch Layout" - labelOff="2D" - isChecked={currentLayout} - aria-checked={currentLayout} - onChange={() => changeLayout()} - aria-label="Toggle graph layout from 2D to 3D" - /> - </div> - - {/* Scale Nodes Switch and Dropdown */} - <div className="feed-tree__control feed-tree__individual-scale"> - <Switch - id="individual-scale" - label="Scale Nodes On" - labelOff="Scale Nodes Off" - isChecked={overlayScale.enabled} - aria-checked={overlayScale.enabled} - onChange={() => handleChange(Feature.SCALE_ENABLED)} - aria-label="Scale nodes" + ) : ( + <RotateRight + className="feed-tree__orientation--icon" + aria-label="Rotate Right" + aria-hidden="true" + onClick={() => handleChange(Feature.ORIENTATION, "vertical")} /> + )} + </div> - {overlayScale.enabled && ( - <div className="dropdown-wrap"> - <NodeScaleDropdown - selected={overlayScale.type} - onChange={(type) => handleChange(Feature.SCALE_TYPE, type)} - /> - </div> - )} - </div> - - {/* Search Box Switch */} - <div className="feed-tree__control"> - <Switch - id="search" - label="Search On" - labelOff="Search Off" - isChecked={switchState.searchBox} - aria-checked={switchState.searchBox} - onChange={() => handleChange(Feature.SEARCH_BOX)} - aria-label="Toggle search a node in the tree" - /> - </div> - - {/* Search Input */} - <div className="feed-tree__control"> - {switchState.searchBox && ( - <TextInput - value={switchState.searchFilter} - onChange={(_event, value: string) => - updateState((draft) => { - draft.switchState.searchFilter = value; - }) - } - aria-label="Search nodes" - placeholder="Search..." + {/* Toggle Labels Switch */} + <div className="feed-tree__control"> + <Switch + id="labels" + label="Hide Labels" + labelOff="Show Labels" + isChecked={switchState.toggleLabels} + aria-checked={switchState.toggleLabels} + onChange={() => handleChange(Feature.TOGGLE_LABELS)} + aria-label="Toggle label visibility" + /> + </div> + + {/* Switch Layout Toggle */} + <div className="feed-tree__control"> + <Switch + id="layout" + label="Switch Layout" + labelOff="2D" + isChecked={currentLayout} + aria-checked={currentLayout} + onChange={() => changeLayout()} + aria-label="Toggle graph layout from 2D to 3D" + /> + </div> + + {/* Scale Nodes Switch and Dropdown */} + <div className="feed-tree__control feed-tree__individual-scale"> + <Switch + id="individual-scale" + label="Scale Nodes On" + labelOff="Scale Nodes Off" + isChecked={overlayScale.enabled} + aria-checked={overlayScale.enabled} + onChange={() => handleChange(Feature.SCALE_ENABLED)} + aria-label="Scale nodes" + /> + + {overlayScale.enabled && ( + <div className="dropdown-wrap"> + <NodeScaleDropdown + selected={overlayScale.type} + onChange={(type) => handleChange(Feature.SCALE_TYPE, type)} /> - )} - </div> + </div> + )} </div> - {/* Tree Visualization */} - {treeState.translate.x > 0 && treeState.translate.y > 0 && ( - <svg - ref={svgRef} - focusable="true" - className={SVG_CLASS_NAME} - width="100%" - height="100%" - role="img" - aria-label="Feed Tree Visualization" - > - <g ref={gRef} className={GRAPH_CLASS_NAME}> - <TransitionGroupWrapper - className={GRAPH_CLASS_NAME} - component="g" - transform={`translate(${treeState.translate.x},${treeState.translate.y}) scale(${INITIAL_SCALE})`} - > - {/* Render Links */} - {links?.map((linkData, i) => ( - <Link - key={`link${ - // biome-ignore lint/suspicious/noArrayIndexKey: <explanation> - i - }`} - orientation={switchState.orientation} - linkData={linkData} - isDarkTheme={isDarkTheme} - /> - ))} - - {/* Render Nodes */} - {nodes?.map(({ data, x, y, parent }) => ( - <NodeWrapper - key={`node${data.id}`} - data={data} - position={{ x, y }} - parent={parent} - onNodeClick={(item) => onNodeClick(item)} - orientation={switchState.orientation} - toggleLabel={switchState.toggleLabels} - overlayScale={ - overlayScale.enabled ? overlayScale.type : undefined - } - searchFilter={switchState.searchFilter} - /> - ))} - </TransitionGroupWrapper> - </g> - </svg> - )} + {/* Search Box Switch */} + <div className="feed-tree__control"> + <Switch + id="search" + label="Search On" + labelOff="Search Off" + isChecked={switchState.searchBox} + aria-checked={switchState.searchBox} + onChange={() => handleChange(Feature.SEARCH_BOX)} + aria-label="Toggle search a node in the tree" + /> + </div> + + {/* Search Input */} + <div className="feed-tree__control"> + {switchState.searchBox && ( + <TextInput + value={switchState.searchFilter} + onChange={(_event, value: string) => + updateState((draft) => { + draft.switchState.searchFilter = value; + }) + } + aria-label="Search nodes" + placeholder="Search..." + /> + )} + </div> </div> + + {/* Tree Visualization */} + {treeState.translate.x > 0 && treeState.translate.y > 0 && ( + <svg + ref={svgRef} + focusable="true" + className={SVG_CLASS_NAME} + width="100%" + height="100%" + role="img" + aria-label="Feed Tree Visualization" + > + <g ref={gRef} className={GRAPH_CLASS_NAME}> + <TransitionGroupWrapper + className={GRAPH_CLASS_NAME} + component="g" + transform={`translate(${treeState.translate.x},${treeState.translate.y}) scale(${INITIAL_SCALE})`} + > + {/* Render Links */} + {links?.map((linkData, i) => ( + <Link + key={`link${ + // biome-ignore lint/suspicious/noArrayIndexKey: <explanation> + i + }`} + orientation={switchState.orientation} + linkData={linkData} + isDarkTheme={isDarkTheme} + /> + ))} + + {/* Render Nodes */} + {nodes?.map(({ data, x, y, parent }) => ( + <NodeWrapper + key={`node${data.id}`} + data={data} + position={{ x, y }} + parent={parent} + onNodeClick={(item) => onNodeClick(item)} + orientation={switchState.orientation} + toggleLabel={switchState.toggleLabels} + overlayScale={ + overlayScale.enabled ? overlayScale.type : undefined + } + searchFilter={switchState.searchFilter} + /> + ))} + </TransitionGroupWrapper> + </g> + </svg> + )} </div> ); }; diff --git a/src/components/Feeds/FeedView.tsx b/src/components/Feeds/FeedView.tsx index de5f35933..3aea16224 100644 --- a/src/components/Feeds/FeedView.tsx +++ b/src/components/Feeds/FeedView.tsx @@ -179,6 +179,9 @@ const FeedView: React.FC = () => { order={2} defaultSize={47} minSize={20} + style={{ + overflow: "scroll", + }} > {handleDrawerAction("node")} <div className="node-block"> diff --git a/src/components/NodeDetails/LogTerminal.tsx b/src/components/NodeDetails/LogTerminal.tsx index b6965720c..d87a9b77a 100644 --- a/src/components/NodeDetails/LogTerminal.tsx +++ b/src/components/NodeDetails/LogTerminal.tsx @@ -1,6 +1,4 @@ import { LogViewer } from "@patternfly/react-log-viewer"; -import { useRef, useEffect, useState } from "react"; -import useSize from "../FeedTree/useSize"; import { useAppSelector } from "../../store/hooks"; type LogTerminalProps = { @@ -8,59 +6,26 @@ type LogTerminalProps = { }; const LogTerminal = ({ text }: LogTerminalProps) => { - const divRef = useRef<HTMLDivElement>(null); - const size = useSize(divRef); const isTerminalMaximized = useAppSelector( (state) => state.drawers.node.maximized, ); - const [terminalSize, setTerminalSize] = useState({ - width: "100%", - height: "100%", - }); - - const handleResize = () => { - if (divRef.current && size) { - const parentWidth = size.width; - const parentHeight = size.height; - const element = document.getElementById("log-viewer"); - if (element) { - setTerminalSize({ - width: `${parentWidth}px`, - height: `${parentHeight}px`, - }); - } - } + const containerStyle = { + height: isTerminalMaximized ? "100vh" : "100%", + width: "100%", + display: "flex", + flexDirection: "column" as const, + flexGrow: 1, }; - useEffect(() => { - // Call handleResize whenever window resizes - window.addEventListener("resize", handleResize); - - // Initial resize logic when component mounts - handleResize(); - - // Cleanup on unmount - return () => { - window.removeEventListener("resize", handleResize); - }; - }, [size, isTerminalMaximized]); // Ensure the effect runs when size or maximized state changes + const logViewerStyle = { + flexGrow: 1, + overflow: "auto", + }; return ( - <div - id="log-viewer" - ref={divRef} - style={{ - height: "100%", - width: "100%", - }} - > - <LogViewer - height={terminalSize.height} - width={terminalSize.width} - hasLineNumbers={false} - data={text} - /> + <div style={containerStyle}> + <LogViewer style={logViewerStyle} hasLineNumbers={false} data={text} /> </div> ); }; diff --git a/src/components/NodeDetails/NodeDetails.css b/src/components/NodeDetails/NodeDetails.css index 28b7a0784..c26831ccf 100644 --- a/src/components/NodeDetails/NodeDetails.css +++ b/src/components/NodeDetails/NodeDetails.css @@ -164,3 +164,15 @@ width: calc(100% - 40px); } } + +.pf-v5-c-log-viewer__main, +.pf-v5-c-log-viewer__list { + flex-grow: 1 !important; + overflow: auto; + +} + +.pf-v5-c-log-viewer__scroll-container{ + height:100% !important; +} + From 4da7d1b90366cce74f304236f52dd28925b58de0 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 16 Oct 2024 11:56:15 -0400 Subject: [PATCH 305/337] feat: Sticky feed header --- src/components/Feeds/FeedListView.tsx | 96 +++++++++++++++------------ src/store/cart/uploadSaga.ts | 16 +++-- 2 files changed, 63 insertions(+), 49 deletions(-) diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index b4b05b310..4fb0675a6 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -254,51 +254,57 @@ const TableSelectable: React.FC = () => { return ( <WrapperConnect titleComponent={TitleComponent}> - <PageSection style={{ paddingTop: "0.25em" }} className="feed-header"> - <div> - <FeedSearch - loading={loadingFeedState} - search={search} - searchType={searchType} - onSearch={handleFilterChange} - /> - </div> - {generatePagination(feedCount)} - <div - style={{ - display: "flex", - justifyContent: "space-between", - alignItems: "center", - }} - > - <ToggleGroup - style={{ marginRight: "0.5em" }} - aria-label="Default with single selectable" - > - <ToggleGroupItem - text="Private Feeds" - buttonId="private" - isSelected={type === "private"} - onChange={onExampleTypeChange} - isDisabled={!isLoggedIn} - /> - <ToggleGroupItem - text="Public Feeds" - buttonId="public" - isSelected={type === "public"} - onChange={onExampleTypeChange} + <PageSection + stickyOnBreakpoint={{ + default: "top", + }} + style={{ paddingTop: "0.25em", paddingBottom: "0" }} + > + <div className="feed-header"> + <div> + <FeedSearch + loading={loadingFeedState} + search={search} + searchType={searchType} + onSearch={handleFilterChange} /> - </ToggleGroup> - <CreateFeedProvider> - <PipelineProvider> - <AddNodeProvider> - <CreateFeed /> - </AddNodeProvider> - </PipelineProvider> - </CreateFeedProvider> + </div> + {generatePagination(feedCount)} + <div + style={{ + display: "flex", + justifyContent: "space-between", + alignItems: "center", + }} + > + <ToggleGroup + style={{ marginRight: "0.5em" }} + aria-label="Default with single selectable" + > + <ToggleGroupItem + text="Private Feeds" + buttonId="private" + isSelected={type === "private"} + onChange={onExampleTypeChange} + isDisabled={!isLoggedIn} + /> + <ToggleGroupItem + text="Public Feeds" + buttonId="public" + isSelected={type === "public"} + onChange={onExampleTypeChange} + /> + </ToggleGroup> + <CreateFeedProvider> + <PipelineProvider> + <AddNodeProvider> + <CreateFeed /> + </AddNodeProvider> + </PipelineProvider> + </CreateFeedProvider> + </div> </div> - </PageSection> - <PageSection style={{ paddingBlockStart: "0.5em" }}> + <Operations origin={{ type: OperationContext.FEEDS, @@ -308,9 +314,13 @@ const TableSelectable: React.FC = () => { toolbarItem: { paddingInlineStart: "0" }, toolbar: { paddingTop: "0", + paddingBottom: "0", + background: "inherit", }, }} /> + </PageSection> + <PageSection style={{ paddingBlockStart: "0.5em" }}> {loadingFeedState ? ( <LoadingTable /> ) : feedsToDisplay.length > 0 ? ( diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index a61be9a60..79232e902 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -11,12 +11,12 @@ import { setFolderUploadStatus, startUpload, } from "./cartSlice"; +import { createFeed } from "./downloadSaga"; import type { FileUploadObject, FolderUploadObject, UploadPayload, } from "./types"; -import { createFeed } from "./downloadSaga"; function createUploadChannel(config: any) { return eventChannel((emitter) => { @@ -28,12 +28,10 @@ function createUploadChannel(config: any) { }; const source = axios.CancelToken.source(); - const axiosConfig = { - headers: config.headers, - onUploadProgress, - cancelToken: source.token, ...config, + cancelToken: source.token, + onUploadProgress, }; const cancelHandler = () => { @@ -344,7 +342,13 @@ function* updateFileUploadStatus( shouldCreateFeed?: boolean, ) { const isDone = progress === 100; - const step = isDone && response ? "Upload Complete" : "Uploading..."; + + const step = + isDone && !response + ? "Server Processing..." + : isDone && response + ? "Upload Complete" + : "Uploading..."; // Invalidate the ui page if the file upload is complete isDone && !shouldCreateFeed && invalidateFunc(); From 8047e61da29271d391ce69a6dbf88af670278a1f Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 16 Oct 2024 12:55:41 -0400 Subject: [PATCH 306/337] feat: Update Deletion of Nodes --- src/components/DeleteNode/index.tsx | 123 +++++++----------- src/components/FeedTree/Node.tsx | 3 +- .../pluginInstance/pluginInstanceSlice.ts | 66 +++++++++- 3 files changed, 114 insertions(+), 78 deletions(-) diff --git a/src/components/DeleteNode/index.tsx b/src/components/DeleteNode/index.tsx index 36e9dc1ec..e2f4dcf2a 100644 --- a/src/components/DeleteNode/index.tsx +++ b/src/components/DeleteNode/index.tsx @@ -1,120 +1,93 @@ -import type { PluginInstance } from "@fnndsc/chrisapi"; -import { Button, Modal, ModalVariant } from "@patternfly/react-core"; -import { useMutation } from "@tanstack/react-query"; -import { Fragment, useEffect } from "react"; -import { fetchResource } from "../../api/common"; +import { Button, Modal, ModalVariant, Spinner } from "@patternfly/react-core"; +import { Fragment, useState } from "react"; import { useAppDispatch, useAppSelector } from "../../store/hooks"; import { getNodeOperations } from "../../store/plugin/pluginSlice"; -import { - setPluginInstancesAndSelectedPlugin, - getSelectedPlugin, -} from "../../store/pluginInstance/pluginInstanceSlice"; -import { getPluginInstanceStatusRequest } from "../../store/resources/resourceSlice"; +import { deletePluginInstance } from "../../store/pluginInstance/pluginInstanceSlice"; import { Alert } from "../Antd"; -import { SpinContainer } from "../Common"; const DeleteNode = () => { const dispatch = useAppDispatch(); - const { deleteNode: isModalOpen } = useAppSelector( - (state) => state.plugin.nodeOperations, + const isModalOpen = useAppSelector( + (state) => state.plugin.nodeOperations.deleteNode, ); const { selectedPlugin } = useAppSelector((state) => state.instance); - const currentFeed = useAppSelector((state) => state.feed.currentFeed.data); + + // Local state for delete operation + const [loading, setLoading] = useState(false); + const [success, setSuccess] = useState(false); + const [error, setError] = useState<string | null>(null); const handleDelete = async () => { if (selectedPlugin) { + setLoading(true); + setError(null); try { - const statuses = [ - "finishedSuccessfully", - "finishedWithError", - "cancelled", - ]; - const status = selectedPlugin.data.status; - - if (!statuses.includes(status)) { - throw new Error( - "Cannot delete actively running node at the moment...", - ); - } - - await selectedPlugin.delete(); - //Fetch Resources again because I don't understand how delete works in cube. It's highly inconsistent - if (currentFeed) { - const params = { limit: 15, offset: 0 }; - - const fn = currentFeed.getPluginInstances; - const boundFn = fn.bind(currentFeed); - const { resource: pluginInstances } = - await fetchResource<PluginInstance>(params, boundFn); - - const selected = pluginInstances[pluginInstances.length - 1]; - const pluginInstanceObj = { - selected, - pluginInstances, - }; - - dispatch(getSelectedPlugin(selected)); - dispatch(setPluginInstancesAndSelectedPlugin(pluginInstanceObj)); - dispatch(getPluginInstanceStatusRequest(pluginInstanceObj)); - } - } catch (e) { - if (e instanceof Error) throw new Error(e.message); + await dispatch(deletePluginInstance(selectedPlugin)).unwrap(); + setSuccess(true); + // Close the modal after a short delay + setTimeout(() => { + handleModalClose(); + }, 1500); + } catch (err) { + setError(err as string); + } finally { + setLoading(false); } - } else { - throw new Error("Please select a node to delete"); } }; - const mutation = useMutation({ - mutationFn: () => handleDelete(), - }); - - const handleModalToggle = () => { + const handleModalClose = () => { + // Reset local state when modal is closed + setLoading(false); + setSuccess(false); + setError(null); dispatch(getNodeOperations("deleteNode")); }; - useEffect(() => { - if (mutation.isSuccess) { - setTimeout(() => { - mutation.reset(); - dispatch(getNodeOperations("deleteNode")); - }, 1000); - } - }, [mutation.isSuccess]); - return ( <Modal variant={ModalVariant.small} title="Delete Selected Node" isOpen={isModalOpen} - onClose={handleModalToggle} + onClose={handleModalClose} actions={[ <Fragment key="button-actions"> <Button key="confirm" variant="primary" - onClick={() => mutation.mutate()} + onClick={handleDelete} + isDisabled={loading || success} > Confirm </Button> - <Button key="cancel" variant="primary" onClick={handleModalToggle}> + <Button key="cancel" variant="secondary" onClick={handleModalClose}> Cancel </Button> </Fragment>, ]} > <span> - {" "} Deleting a node will delete all of its descendants as well. Please - confirm if you are sure + confirm if you are sure. </span> - {mutation.isPending && <SpinContainer title="Deleting..." />} - {mutation.isError && ( - <Alert type="error" description={mutation.error.message} /> + {loading && ( + <div + style={{ marginTop: "1rem", display: "flex", alignItems: "center" }} + > + <Spinner size="lg" /> + <span style={{ marginLeft: "0.5rem" }}>Deleting...</span> + </div> + )} + {error && ( + <Alert type="error" description={error} style={{ marginTop: "1rem" }} /> )} - {mutation.isSuccess && ( - <Alert type="success" description="Deleted Successfully" /> + {success && ( + <Alert + type="success" + description="Deleted Successfully" + style={{ marginTop: "1rem" }} + /> )} </Modal> ); diff --git a/src/components/FeedTree/Node.tsx b/src/components/FeedTree/Node.tsx index 8d0a8d76d..0ff4d4f75 100644 --- a/src/components/FeedTree/Node.tsx +++ b/src/components/FeedTree/Node.tsx @@ -312,7 +312,8 @@ const NodeWrapper = (props: NodeWrapperProps) => { }); const currentId = useAppSelector((state) => { - if (state.instance.selectedPlugin?.data.id === data.id) return true; + console.log("state", state); + if (state.instance.selectedPlugin?.data.id === data?.id) return true; return false; }); diff --git a/src/store/pluginInstance/pluginInstanceSlice.ts b/src/store/pluginInstance/pluginInstanceSlice.ts index 48c1cdbc3..64c6386c5 100644 --- a/src/store/pluginInstance/pluginInstanceSlice.ts +++ b/src/store/pluginInstance/pluginInstanceSlice.ts @@ -10,7 +10,13 @@ import type { AddNodePayload, PluginInstanceObj, } from "./types"; -import { getPluginInstanceStatusRequest } from "../resources/resourceSlice"; +import { + getPluginInstanceStatusRequest, + stopFetchingPluginResources, + stopFetchingStatusResources, +} from "../resources/resourceSlice"; +import type { RootState } from "../root/applicationState"; +import type { IActionTypeParam } from "../../api/model"; // Define the initial state const initialState: IPluginInstanceState = { @@ -81,6 +87,42 @@ export const addNode = createAsyncThunk< }, ); +// Async thunk for deleting a plugin instance +export const deletePluginInstance = createAsyncThunk< + PluginInstanceObj, + PluginInstance, + { rejectValue: string; state: RootState } +>( + "pluginInstance/deletePluginInstance", + async (pluginInstance, { dispatch, getState, rejectWithValue }) => { + try { + const id = pluginInstance.data.id; + dispatch(stopFetchingPluginResources(id)); + dispatch(stopFetchingStatusResources(id)); + + await pluginInstance.delete(); + // Get the updated state + const state = getState() as RootState; + const pluginInstances = state.instance.pluginInstances.data.filter( + (instance) => instance.data, + ); + const selected = pluginInstances[pluginInstances.length - 1]; + const pluginInstanceObj = { + selected, + pluginInstances, + }; + + dispatch(getSelectedPlugin(selected)); + dispatch(getPluginInstanceStatusRequest(pluginInstanceObj)); + + return pluginInstanceObj; + } catch (error) { + const errMessage = catchError(error).error_message; + return rejectWithValue(errMessage); + } + }, +); + // Create a slice const pluginInstanceSlice = createSlice({ name: "pluginInstance", @@ -148,7 +190,27 @@ const pluginInstanceSlice = createSlice({ state.pluginInstances.data = [action.payload.selected]; } }, - ); + ) // Handle deletePluginInstance + .addCase(deletePluginInstance.pending, (state) => { + state.pluginInstances.loading = true; + state.pluginInstances.error = ""; + }) + .addCase( + deletePluginInstance.fulfilled, + (state, action: PayloadAction<PluginInstanceObj>) => { + state.pluginInstances = { + data: action.payload.pluginInstances, + error: "", + loading: false, + }; + state.selectedPlugin = action.payload.selected; + }, + ) + .addCase(deletePluginInstance.rejected, (state, action) => { + state.pluginInstances.loading = false; + state.pluginInstances.error = + action.payload || "Failed to delete plugin instance."; + }); }, }); From c7a34729d536bfc40e0ff75905454c5114fed0ce Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 16 Oct 2024 18:11:34 -0400 Subject: [PATCH 307/337] feat: Delete an active plugin instance and descendants --- src/components/FeedTree/Node.tsx | 297 ++++++++++-------- .../pluginInstance/pluginInstanceSlice.ts | 83 +++-- 2 files changed, 232 insertions(+), 148 deletions(-) diff --git a/src/components/FeedTree/Node.tsx b/src/components/FeedTree/Node.tsx index 0ff4d4f75..678bdfcfc 100644 --- a/src/components/FeedTree/Node.tsx +++ b/src/components/FeedTree/Node.tsx @@ -1,8 +1,3 @@ -import type { PluginInstance } from "@fnndsc/chrisapi"; -import { useMutation } from "@tanstack/react-query"; -import { notification } from "antd"; -import type { HierarchyPointNode } from "d3-hierarchy"; -import { select } from "d3-selection"; import { Fragment, memo, @@ -11,6 +6,12 @@ import { useEffect, useRef, } from "react"; +import { useMutation } from "@tanstack/react-query"; +import { notification } from "antd"; +import type { HierarchyPointNode } from "d3-hierarchy"; +import { select } from "d3-selection"; +import type { PluginInstance } from "@fnndsc/chrisapi"; + import ChrisAPIClient from "../../api/chrisapiclient"; import { useAppDispatch, useAppSelector } from "../../store/hooks"; import { @@ -18,6 +19,7 @@ import { setPluginInstancesAndSelectedPlugin, } from "../../store/pluginInstance/pluginInstanceSlice"; import { getPluginInstanceStatusRequest } from "../../store/resources/resourceSlice"; + import AddNodeConnect from "../AddNode/AddNode"; import { AddNodeProvider } from "../AddNode/context"; import AddPipeline from "../AddPipeline/AddPipeline"; @@ -28,6 +30,7 @@ import type { FeedTreeScaleType } from "./Controls"; import DropdownMenu from "./DropdownMenu"; import type { Point, TreeNodeDatum } from "./data"; +/** Type definitions */ type NodeWrapperProps = { tsNodes?: PluginInstance[]; data: TreeNodeDatum; @@ -46,8 +49,14 @@ type NodeProps = NodeWrapperProps & { currentId: boolean; }; +/** Constants */ const DEFAULT_NODE_CIRCLE_RADIUS = 12; +/** Helper Functions */ + +/** + * Sets the transform attribute for a node based on its orientation. + */ const setNodeTransform = ( orientation: "horizontal" | "vertical", position: Point, @@ -57,65 +66,38 @@ const setNodeTransform = ( : `translate(${position.x}, ${position.y})`; }; -const Node = (props: NodeProps) => { - const { isDarkTheme } = useContext(ThemeContext); - const nodeRef = useRef<SVGGElement>(null); - const textRef = useRef<SVGTextElement>(null); - const { - orientation, - position, - data, - onNodeClick, - toggleLabel, - status, - currentId, - overlaySize, - searchFilter, - } = props; - - const [api, contextHolder] = notification.useNotification(); - const dispatch = useAppDispatch(); - - const pluginInstances = useAppSelector( - (state) => state.instance.pluginInstances.data, - ); - const selectedPlugin = useAppSelector((state) => { - return state.instance.selectedPlugin; - }); - - const applyNodeTransform = useCallback((transform: string, opacity = 1) => { - select(nodeRef.current) - .attr("transform", transform) - .style("opacity", opacity); - select(textRef.current).attr("transform", "translate(-28, 28)"); - }, []); - - useEffect(() => { - const nodeTransform = setNodeTransform(orientation, position); - applyNodeTransform(nodeTransform); - }, [orientation, position, applyNodeTransform]); +/** + * Determines the CSS class for a node based on its status. + */ +const getStatusClass = ( + status: string | undefined, + data: TreeNodeDatum, + pluginInstances: PluginInstance[], + searchFilter: string, +): string => { + if (!status) return ""; let statusClass = ""; - if ( - status && - (status === "started" || - status === "scheduled" || - status === "registeringFiles" || - status === "created") - ) { - statusClass = "active"; - } - if (status === "waiting") { - statusClass = "queued"; - } - - if (status === "finishedSuccessfully") { - statusClass = "success"; - } - - if (status === "finishedWithError" || status === "cancelled") { - statusClass = "error"; + switch (status) { + case "started": + case "scheduled": + case "registeringFiles": + case "created": + statusClass = "active"; + break; + case "waiting": + statusClass = "queued"; + break; + case "finishedSuccessfully": + statusClass = "success"; + break; + case "finishedWithError": + case "cancelled": + statusClass = "error"; + break; + default: + break; } if ( @@ -130,7 +112,7 @@ const Node = (props: NodeProps) => { const previous_id = data.item?.data?.previous_id; if (previous_id) { - const parentNode = pluginInstances?.find( + const parentNode = pluginInstances.find( (node) => node.data.id === previous_id, ); @@ -143,9 +125,20 @@ const Node = (props: NodeProps) => { } } - // This pipeline code is temporary and will be moved someplace else - const alreadyAvailableInstances = pluginInstances; - async function fetchPipelines() { + return statusClass; +}; + +/** + * Custom hook to handle pipeline mutation logic. + */ +const usePipelineMutation = ( + selectedPlugin: PluginInstance | undefined, + pluginInstances: PluginInstance[], + dispatch: any, +) => { + const [api, contextHolder] = notification.useNotification(); + + const fetchPipelines = async () => { const client = ChrisAPIClient.getClient(); try { @@ -160,27 +153,20 @@ const Node = (props: NodeProps) => { const { id } = pipeline.data; //@ts-ignore - // We do not need to explicitly provide the nodes_info property. This change needs to be made - // in the js client const workflow = await client.createWorkflow(id, { - previous_plugin_inst_id: selectedPlugin?.data.id, // Ensure selectedPlugin is defined + previous_plugin_inst_id: selectedPlugin?.data.id, }); - const pluginInstances = await workflow.getPluginInstances({ + const pluginInstancesResponse = await workflow.getPluginInstances({ limit: 1000, }); - const instanceItems = pluginInstances.getItems(); + const instanceItems = pluginInstancesResponse.getItems(); - if ( - instanceItems && - instanceItems.length > 0 && - alreadyAvailableInstances - ) { + if (instanceItems && instanceItems.length > 0) { const firstInstance = instanceItems[instanceItems.length - 1]; - const completeList = [...alreadyAvailableInstances, ...instanceItems]; + const completeList = [...pluginInstances, ...instanceItems]; - // Assuming reactDispatch, getSelectedPlugin, getPluginInstanceStatusSuccess, and getPluginInstanceStatusRequest are defined elsewhere dispatch(getSelectedPlugin(firstInstance)); const pluginInstanceObj = { @@ -201,27 +187,23 @@ const Node = (props: NodeProps) => { // biome-ignore lint/complexity/noUselessCatch: <explanation> throw error; } - } + }; const mutation = useMutation({ - mutationFn: () => fetchPipelines(), + mutationFn: fetchPipelines, }); useEffect(() => { - if (mutation.isSuccess || mutation.isError) { - if (mutation.isSuccess) { - api.success({ - message: "Zipping process started...", - }); - mutation.reset(); - } - if (mutation.isError) { - api.error({ - message: mutation.error.message, - }); - } - } - if (mutation.isPending) { + if (mutation.isSuccess) { + api.success({ + message: "Zipping process started...", + }); + mutation.reset(); + } else if (mutation.isError) { + api.error({ + message: (mutation.error as Error).message, + }); + } else if (mutation.isPending) { api.info({ message: "Preparing to initiate the zipping process...", }); @@ -232,8 +214,81 @@ const Node = (props: NodeProps) => { mutation.isSuccess, mutation.isError, mutation.isPending, + mutation.reset, ]); + return { mutation, contextHolder }; +}; + +/** Components */ + +/** + * Modals component to render all modal components. + */ +const Modals = () => ( + <> + <AddNodeProvider> + <AddNodeConnect /> + </AddNodeProvider> + <DeleteNode /> + <PipelineProvider> + <AddPipeline /> + </PipelineProvider> + </> +); + +/** + * Node component representing a single node in the tree. + */ +const Node = (props: NodeProps) => { + const { isDarkTheme } = useContext(ThemeContext); + const nodeRef = useRef<SVGGElement>(null); + const textRef = useRef<SVGTextElement>(null); + const { + orientation, + position, + data, + onNodeClick, + toggleLabel, + status, + currentId, + overlaySize, + searchFilter, + } = props; + + const dispatch = useAppDispatch(); + const pluginInstances = useAppSelector( + (state) => state.instance.pluginInstances.data, + ); + const selectedPlugin = useAppSelector( + (state) => state.instance.selectedPlugin, + ); + + const { mutation, contextHolder } = usePipelineMutation( + selectedPlugin, + pluginInstances, + dispatch, + ); + + const applyNodeTransform = useCallback((transform: string, opacity = 1) => { + select(nodeRef.current) + .attr("transform", transform) + .style("opacity", opacity); + select(textRef.current).attr("transform", "translate(-28, 28)"); + }, []); + + useEffect(() => { + const nodeTransform = setNodeTransform(orientation, position); + applyNodeTransform(nodeTransform); + }, [orientation, position, applyNodeTransform]); + + const statusClass = getStatusClass( + status, + data, + pluginInstances, + searchFilter, + ); + const textLabel = ( <g style={{ @@ -251,17 +306,7 @@ const Node = (props: NodeProps) => { return ( <Fragment> - <> - {/* Note this modals are fired from the dropdown menu in the tree*/} - <AddNodeProvider> - <AddNodeConnect /> - </AddNodeProvider> - {/* Graph Node Container is missing */} - <DeleteNode /> - <PipelineProvider> - <AddPipeline /> - </PipelineProvider> - </> + <Modals /> {contextHolder} {/* biome-ignore lint/a11y/useKeyWithClickEvents: <explanation> */} <g @@ -294,8 +339,7 @@ const Node = (props: NodeProps) => { r={DEFAULT_NODE_CIRCLE_RADIUS * overlaySize} /> )} - - {statusClass === "search" ? textLabel : toggleLabel ? textLabel : null} + {(statusClass === "search" || toggleLabel) && textLabel} </g> </Fragment> ); @@ -303,26 +347,29 @@ const Node = (props: NodeProps) => { const NodeMemoed = memo(Node); +/** + * NodeWrapper component to connect the Node component with Redux state. + */ const NodeWrapper = (props: NodeWrapperProps) => { const { data, overlayScale } = props; + const status = useAppSelector((state) => { if (data.id && state.resource.pluginInstanceStatus[data.id]) { return state.resource.pluginInstanceStatus[data.id].status; } + return undefined; }); const currentId = useAppSelector((state) => { - console.log("state", state); - if (state.instance.selectedPlugin?.data.id === data?.id) return true; - return false; + return state.instance.selectedPlugin?.data.id === data.id; }); - let scale: number | undefined; // undefined scale is treated as no indvidual scaling + let scale: number | undefined; if (overlayScale === "time") { - const instanceData = props.data.item?.data; + const instanceData = data.item?.data; if (instanceData) { - const start = new Date(instanceData?.start_date); - const end = new Date(instanceData?.end_date); + const start = new Date(instanceData.start_date); + const end = new Date(instanceData.end_date); scale = Math.log10(end.getTime() - start.getTime()) / 2; } } @@ -337,18 +384,12 @@ const NodeWrapper = (props: NodeWrapperProps) => { ); }; -export default memo( - NodeWrapper, - (prevProps: NodeWrapperProps, nextProps: NodeWrapperProps) => { - if ( - prevProps.data !== nextProps.data || - prevProps.position !== nextProps.position || - prevProps.parent !== nextProps.parent || - prevProps.toggleLabel !== nextProps.toggleLabel || - prevProps.orientation !== nextProps.orientation - ) { - return false; - } - return true; - }, -); +export default memo(NodeWrapper, (prevProps, nextProps) => { + return ( + prevProps.data === nextProps.data && + prevProps.position === nextProps.position && + prevProps.parent === nextProps.parent && + prevProps.toggleLabel === nextProps.toggleLabel && + prevProps.orientation === nextProps.orientation + ); +}); diff --git a/src/store/pluginInstance/pluginInstanceSlice.ts b/src/store/pluginInstance/pluginInstanceSlice.ts index 64c6386c5..8b409743e 100644 --- a/src/store/pluginInstance/pluginInstanceSlice.ts +++ b/src/store/pluginInstance/pluginInstanceSlice.ts @@ -1,22 +1,21 @@ +import type { Feed, PluginInstance } from "@fnndsc/chrisapi"; import { - createSlice, - createAsyncThunk, type PayloadAction, + createAsyncThunk, + createSlice, } from "@reduxjs/toolkit"; -import type { Feed, PluginInstance } from "@fnndsc/chrisapi"; import { catchError, fetchResource } from "../../api/common"; -import type { - IPluginInstanceState, - AddNodePayload, - PluginInstanceObj, -} from "./types"; import { getPluginInstanceStatusRequest, stopFetchingPluginResources, stopFetchingStatusResources, } from "../resources/resourceSlice"; import type { RootState } from "../root/applicationState"; -import type { IActionTypeParam } from "../../api/model"; +import type { + AddNodePayload, + IPluginInstanceState, + PluginInstanceObj, +} from "./types"; // Define the initial state const initialState: IPluginInstanceState = { @@ -87,6 +86,8 @@ export const addNode = createAsyncThunk< }, ); +// Async thunk for deleting a plugin instance + // Async thunk for deleting a plugin instance export const deletePluginInstance = createAsyncThunk< PluginInstanceObj, @@ -97,24 +98,34 @@ export const deletePluginInstance = createAsyncThunk< async (pluginInstance, { dispatch, getState, rejectWithValue }) => { try { const id = pluginInstance.data.id; - dispatch(stopFetchingPluginResources(id)); - dispatch(stopFetchingStatusResources(id)); + // Get the current pluginInstances from the state + const state = getState() as RootState; + const pluginInstances = state.instance.pluginInstances.data; + // Get all descendant ids + const descendantIds = getAllDescendantIds(pluginInstances, id); + // Stop fetching resources for all descendants + descendantIds.forEach((descendantId) => { + dispatch(stopFetchingPluginResources(descendantId)); + dispatch(stopFetchingStatusResources(descendantId)); + }); + // Delete the plugin instance (assuming it will delete its descendants) await pluginInstance.delete(); - // Get the updated state - const state = getState() as RootState; - const pluginInstances = state.instance.pluginInstances.data.filter( - (instance) => instance.data, + + // Filter out all instances with ids in descendantIds + const remainingPluginInstances = pluginInstances.filter( + (instance) => + instance.data && !descendantIds.includes(instance.data.id), ); - const selected = pluginInstances[pluginInstances.length - 1]; + + const selected = + remainingPluginInstances[remainingPluginInstances.length - 1]; + const pluginInstanceObj = { selected, - pluginInstances, + pluginInstances: remainingPluginInstances, }; - dispatch(getSelectedPlugin(selected)); - dispatch(getPluginInstanceStatusRequest(pluginInstanceObj)); - return pluginInstanceObj; } catch (error) { const errMessage = catchError(error).error_message; @@ -224,3 +235,35 @@ export const { // Export the reducer export default pluginInstanceSlice.reducer; + +// Helper function to get all descendant IDs +function getAllDescendantIds( + instances: PluginInstance[], + parentId: number, +): number[] { + const parentIdToChildrenMap = new Map<number, PluginInstance[]>(); + + instances.forEach((instance) => { + const previous_id = instance.data.previous_id; + + if (previous_id !== undefined && previous_id !== null) { + if (!parentIdToChildrenMap.has(previous_id)) { + parentIdToChildrenMap.set(previous_id, []); + } + parentIdToChildrenMap.get(previous_id)!.push(instance); + } + }); + + const result: number[] = []; + + function helper(currentId: number) { + result.push(currentId); + const children = parentIdToChildrenMap.get(currentId) || []; + for (const child of children) { + helper(child.data.id); + } + } + + helper(parentId); + return result; +} From f2e54018407872118be2e41deb253439678e2361 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 17 Oct 2024 11:21:01 -0400 Subject: [PATCH 308/337] feat: Handle loading state in the filebrowser --- .../FeedOutputBrowser/FileBrowser.tsx | 171 ++++++++++-------- src/components/FeedTree/ParentComponent.tsx | 29 +-- 2 files changed, 113 insertions(+), 87 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 4849e5260..4a6378caf 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -9,6 +9,7 @@ import { Button, Grid, Tooltip, + Skeleton, } from "@patternfly/react-core"; import { Table, Tbody, Th, Thead, Tr } from "@patternfly/react-table"; import { useEffect } from "react"; @@ -246,82 +247,71 @@ const FileBrowser = (props: FileBrowserProps) => { </Tr> </Thead> <Tbody> - {filesMap?.map( - (resource: FileBrowserFolderFile, index) => { - return ( - <FileRow - rowIndex={index} - key={resource.data.fname} - resource={resource} - name={getFileName(resource)} - date={resource.data.creation_date} - owner={resource.data.owner_username} - size={resource.data.fsize} - computedPath={additionalKey} - handleFolderClick={() => { - return; - }} - handleFileClick={() => { - toggleAnimation(); - dispatch( - setSelectedFile( - resource as FileBrowserFolderFile, - ), - ); - !drawerState.preview.open && - dispatch(setFilePreviewPanel()); - }} - origin={origin} - /> - ); - }, - )} - {linkFilesMap?.map( - (resource: FileBrowserFolderLinkFile, index) => { - return ( - <LinkRow - rowIndex={index} - key={resource.data.path} - resource={resource} - name={getLinkFileName(resource)} - date={resource.data.creation_date} - owner={resource.data.owner_username} - size={resource.data.fsize} - computedPath={additionalKey} - handleFolderClick={() => { - return; - }} - handleFileClick={() => { - handleFileClick(resource.data.path); - }} - origin={origin} - /> - ); - }, - )} - - {subFoldersMap?.map( - (resource: FileBrowserFolder, index) => { - return ( - <FolderRow - rowIndex={index} - key={resource.data.path} - resource={resource} - name={getFolderName(resource, additionalKey)} - date={resource.data.creation_date} - owner=" " - size={0} - computedPath={additionalKey} - handleFolderClick={() => - handleFileClick(resource.data.path) - } - handleFileClick={() => { - return; - }} - origin={origin} - /> - ); - }, + {isLoading ? ( + renderSkeletonRows() + ) : ( + <> + {filesMap?.map( + (resource: FileBrowserFolderFile, index) => ( + <FileRow + key={resource.data.fname} + rowIndex={index} + resource={resource} + name={getFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={additionalKey} + handleFolderClick={() => {}} + handleFileClick={() => { + toggleAnimation(); + dispatch(setSelectedFile(resource)); + !drawerState.preview.open && + dispatch(setFilePreviewPanel()); + }} + origin={origin} + /> + ), + )} + {linkFilesMap?.map( + (resource: FileBrowserFolderLinkFile, index) => ( + <LinkRow + key={resource.data.path} + rowIndex={index} + resource={resource} + name={getLinkFileName(resource)} + date={resource.data.creation_date} + owner={resource.data.owner_username} + size={resource.data.fsize} + computedPath={additionalKey} + handleFolderClick={() => {}} + handleFileClick={() => + handleFileClick(resource.data.path) + } + origin={origin} + /> + ), + )} + {subFoldersMap?.map( + (resource: FileBrowserFolder, index) => ( + <FolderRow + key={resource.data.path} + rowIndex={index} + resource={resource} + name={getFolderName(resource, additionalKey)} + date={resource.data.creation_date} + owner=" " + size={0} + computedPath={additionalKey} + handleFolderClick={() => + handleFileClick(resource.data.path) + } + handleFileClick={() => {}} + origin={origin} + /> + ), + )} + </> )} </Tbody> </Table> @@ -380,3 +370,32 @@ const FileBrowser = (props: FileBrowserProps) => { }; export default FileBrowser; + +const renderSkeletonRows = () => ( + <> + {Array.from({ length: 5 }).map((_, index) => ( + <Tr + key={`skeleton-row-${ + // biome-ignore lint/suspicious/noArrayIndexKey: <explanation> + index + }`} + > + <Th> + <Skeleton width="20px" /> + </Th> + <Th> + <Skeleton width="100px" /> + </Th> + <Th> + <Skeleton width="80px" /> + </Th> + <Th> + <Skeleton width="80px" /> + </Th> + <Th> + <Skeleton width="60px" /> + </Th> + </Tr> + ))} + </> +); diff --git a/src/components/FeedTree/ParentComponent.tsx b/src/components/FeedTree/ParentComponent.tsx index 9d5a49627..c2db5cf45 100644 --- a/src/components/FeedTree/ParentComponent.tsx +++ b/src/components/FeedTree/ParentComponent.tsx @@ -1,4 +1,4 @@ -import React from "react"; +import { useEffect, useState } from "react"; import { useAppSelector } from "../../store/hooks"; import { Alert } from "../Antd"; import { SpinContainer } from "../Common"; @@ -23,17 +23,24 @@ const ParentComponent = (props: ParentComponentProps) => { (state) => state.instance.pluginInstances, ); const { data: instances, error, loading } = pluginInstances; - const [data, setData] = React.useState<TreeNodeDatum[]>([]); - const [tsIds, setTsIds] = React.useState<TSID>(); + const [data, setData] = useState<TreeNodeDatum[]>([]); + const [tsIds, setTsIds] = useState<TSID>(); + const [creating, setCreating] = useState(false); - React.useEffect(() => { + useEffect(() => { if (instances && instances.length > 0) { - const data = getFeedTree(instances); - - getTsNodes(instances).then((nodes) => { - setTsIds(nodes); - }); - setData(data); + setCreating(true); + try { + const data = getFeedTree(instances); + setData(data); + getTsNodes(instances).then((nodes) => { + setTsIds(nodes); + }); + } catch (e) { + setCreating(false); + } finally { + setCreating(false); + } } }, [instances]); @@ -45,7 +52,7 @@ const ParentComponent = (props: ParentComponentProps) => { changeLayout={changeLayout} currentLayout={currentLayout} /> - ) : loading ? ( + ) : loading || creating ? ( <SpinContainer title="Loading the tree" /> ) : error ? ( <Alert type="error" description={error} /> From e8c47f9c8a7c6cf3a56d15930aeba666810891e3 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Fri, 18 Oct 2024 12:54:24 -0400 Subject: [PATCH 309/337] Upgrade miniChRIS --- testing/miniChRIS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/testing/miniChRIS b/testing/miniChRIS index 9b4c5dfa5..09edeb5b6 160000 --- a/testing/miniChRIS +++ b/testing/miniChRIS @@ -1 +1 @@ -Subproject commit 9b4c5dfa5f0b4278b1384bbf6513a9178bab3218 +Subproject commit 09edeb5b6da3ef8f139250fe2aaaef15dc4479c4 From 5be5601fb7c5a8f8a29cb0844dd9076a13ca9ccb Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 18 Oct 2024 17:55:17 -0400 Subject: [PATCH 310/337] feat: minor-cleanup --- package.json | 1 - src/App.tsx | 5 +++-- src/app.css | 10 ---------- src/main.tsx | 1 - 4 files changed, 3 insertions(+), 14 deletions(-) diff --git a/package.json b/package.json index 4038d5d5e..8f1c9b5ea 100644 --- a/package.json +++ b/package.json @@ -44,7 +44,6 @@ "@cornerstonejs/streaming-image-volume-loader": "^1.84.4", "@cornerstonejs/tools": "^1.84.4", "@fnndsc/chrisapi": "^1.22.0", - "@fontsource/inter": "^5.0.20", "@niivue/niivue": "0.44.2", "@patternfly/react-catalog-view-extension": "^5.0.0", "@patternfly/react-charts": "^7.4.0", diff --git a/src/App.tsx b/src/App.tsx index 0c579847d..09be098b9 100644 --- a/src/App.tsx +++ b/src/App.tsx @@ -1,13 +1,14 @@ +import "./app.css"; import "@patternfly/react-core/dist/styles/base.css"; import { QueryClient, QueryClientProvider } from "@tanstack/react-query"; -import { ConfigProvider, App as AntdApp, theme } from "antd"; +import { App as AntdApp, ConfigProvider, theme } from "antd"; import { useContext } from "react"; import { CookiesProvider } from "react-cookie"; import { Provider } from "react-redux"; import { BrowserRouter } from "react-router-dom"; //@ts-ignore import useAckee from "use-ackee"; -import "./app.css"; + import { ThemeContext } from "./components/DarkTheme/useTheme"; import "./components/Feeds/Feeds.css"; import type { EnhancedStore } from "@reduxjs/toolkit"; diff --git a/src/app.css b/src/app.css index 7bbdcc8ac..006abb5b6 100644 --- a/src/app.css +++ b/src/app.css @@ -1,7 +1,3 @@ -body { - font-family: "Inter"; -} - .dcm-preview { position: relative; height: 100%; @@ -86,9 +82,3 @@ body { align-items: center !important; } -.patternfly-font { - font-family: var(--pf-v5-global--FontFamily--text); - font-size: var(--pf-v5-global--FontSize--md); - line-height: var(--pf-v5-global--LineHeight--md); - font-weight: var(--pf-v5-global--FontWeight--normal); -} diff --git a/src/main.tsx b/src/main.tsx index c9cbca60a..3adea29b1 100644 --- a/src/main.tsx +++ b/src/main.tsx @@ -3,7 +3,6 @@ import ReactDOM from "react-dom/client"; import App from "./App.tsx"; import { setupStore } from "./store/configureStore.ts"; import { ThemeContextProvider } from "./components/DarkTheme/useTheme.tsx"; -import "@fontsource/inter/400.css"; // Defaults to weight 400. import { enableMapSet } from "immer"; enableMapSet(); From bc88456d082a839799378f0c6642a71826b7e827 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 18 Oct 2024 18:04:00 -0400 Subject: [PATCH 311/337] feat: remove unused depedencies --- package.json | 1 - pnpm-lock.yaml | 102 ------------------------------------------------- 2 files changed, 103 deletions(-) diff --git a/package.json b/package.json index 8f1c9b5ea..24311c014 100644 --- a/package.json +++ b/package.json @@ -86,7 +86,6 @@ "react-error-boundary": "^4.0.13", "react-force-graph-2d": "^1.25.5", "react-json-view": "^1.21.3", - "react-lazylog": "^4.5.3", "react-redux": "^9.1.2", "react-resizable-panels": "^2.1.4", "react-responsive": "^10.0.0", diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index 80ca2816a..4566b1d14 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -26,9 +26,6 @@ importers: '@fnndsc/chrisapi': specifier: ^1.22.0 version: 1.22.0 - '@fontsource/inter': - specifier: ^5.0.20 - version: 5.0.20 '@niivue/niivue': specifier: 0.44.2 version: 0.44.2 @@ -155,9 +152,6 @@ importers: react-json-view: specifier: ^1.21.3 version: 1.21.3(@types/react@18.3.4)(react-dom@18.3.1(react@18.3.1))(react@18.3.1) - react-lazylog: - specifier: ^4.5.3 - version: 4.5.3(react-dom@18.3.1(react@18.3.1))(react@18.3.1) react-redux: specifier: ^9.1.2 version: 9.1.2(@types/react@18.3.4)(react@18.3.1)(redux@5.0.1) @@ -1188,9 +1182,6 @@ packages: '@fnndsc/chrisapi@1.22.0': resolution: {integrity: sha512-npmjbFouPcQn56P6KAHUCFKS2VGf168VlqWzyzencbZQHNbTB6pMzw+LKTO3Xt9ShYy1iNrdelhr41HaP+AlCQ==} - '@fontsource/inter@5.0.20': - resolution: {integrity: sha512-rtw2F7xfM7rJmmnncXnR4ADr5wXsp4GyN1O1jmQJ1PMjAK+bm620/ZkQkeOYOkGoa09OksGinOeMA+Mkt6K9PQ==} - '@icr/polyseg-wasm@0.4.0': resolution: {integrity: sha512-3sZmiwG8I0NaqPle0L7+V/ZexiR7IjIUFkUsaOoFI9rNuBGyyMMmxAxnCmqcDFtBDk9h+JEYJf6e3NnqlHi/HQ==} engines: {node: '>=0.14'} @@ -1244,11 +1235,6 @@ packages: resolution: {integrity: sha512-qC72D4+CDdjGqJvkFMMEAtancHUQ7/d/tAiHf64z8MopFDmcrtbcJuerDtFceuAfQJ2pDSfCKCtbqoGBNnwg0w==} engines: {node: '>=8'} - '@mattiasbuelens/web-streams-polyfill@0.2.1': - resolution: {integrity: sha512-oKuFCQFa3W7Hj7zKn0+4ypI8JFm4ZKIoncwAC6wd5WwFW2sL7O1hpPoJdSWpynQ4DJ4lQ6MvFoVDmCLilonDFg==} - engines: {node: '>= 8'} - deprecated: moved to web-streams-polyfill@2.0.0 - '@msgpack/msgpack@2.8.0': resolution: {integrity: sha512-h9u4u/jiIRKbq25PM+zymTyW6bhTzELvOoUd+AvYriWOAKpLGnIamaET3pnHYoI5iYphAHBI4ayx0MehR+VVPQ==} engines: {node: '>= 10'} @@ -1739,9 +1725,6 @@ packages: '@types/webxr@0.5.20': resolution: {integrity: sha512-JGpU6qiIJQKUuVSKx1GtQnHJGxRjtfGIhzO2ilq43VZZS//f1h1Sgexbdk+Lq+7569a6EYhOWrUpIruR/1Enmg==} - '@types/whatwg-streams@0.0.7': - resolution: {integrity: sha512-6sDiSEP6DWcY2ZolsJ2s39ZmsoGQ7KVwBDI3sESQsEm9P2dHTcqnDIHRZFRNtLCzWp7hCFGqYbw5GyfpQnJ01A==} - '@ungap/structured-clone@1.2.0': resolution: {integrity: sha512-zuVdFrMJiuCDQUMCzQaD6KL28MjnqqN8XnAqiEq9PNm/hCPTSGfrXCOfwj1ow4LFb/tNymJPwsNbVePc1xFqrQ==} @@ -2067,10 +2050,6 @@ packages: cliui@6.0.0: resolution: {integrity: sha512-t6wbgtoCXvAzst7QgXxJYqPt0usEfbgQdftEPbLL/cvv6HPE5VgvqCuAIDR0NgU52ds6rFwqrgakNLrHEjCbrQ==} - clsx@1.2.1: - resolution: {integrity: sha512-EcR6r5a8bj6pu3ycsa/E/cKVGuTgZJZdsyUYHOksG/UHIiKfjxzRxYJpyVBwYaQeOvghal9fcc4PidlgzugAQg==} - engines: {node: '>=6'} - color-convert@1.9.3: resolution: {integrity: sha512-QfAUtd+vFdAtFQcC8CCyYt1fYWxSqAiK2cSD6zDB8N3cpsEBAvRxp9zOGg6G/SHHJYAT88/az/IuDGALsNVbGg==} @@ -2463,9 +2442,6 @@ packages: fbjs@3.0.5: resolution: {integrity: sha512-ztsSx77JBtkuMrEypfhgc3cI0+0h+svqeie7xHbh1k/IKdcydnvadp/mUaGgjAOXQmQSxsqgaRhS3q9fy+1kxg==} - fetch-readablestream@0.2.0: - resolution: {integrity: sha512-qu4mXWf4wus4idBIN/kVH+XSer8IZ9CwHP+Pd7DL7TuKNC1hP7ykon4kkBjwJF3EMX2WsFp4hH7gU7CyL7ucXw==} - fflate@0.7.3: resolution: {integrity: sha512-0Zz1jOzJWERhyhsimS54VTqOteCNwRtIlh8isdL0AXLo0g7xNTfTL7oWrkmCnPhZGocKIkWHBistBrrpoNH3aw==} @@ -2643,10 +2619,6 @@ packages: immer@10.1.1: resolution: {integrity: sha512-s2MPrmjovJcoMaHtx6K11Ra7oD05NT97w1IC5zpMkT6Atjr7H8LjaDd81iIxUYpMKSRRNMJE703M1Fhr/TctHw==} - immutable@3.8.2: - resolution: {integrity: sha512-15gZoQ38eYjEjxkorfbcgBKBL6R7T459OuK+CpcWt7O3KF4uPCx2tD0uFETlUDIyo+1789crbMhTvQBSR5yBMg==} - engines: {node: '>=0.10.0'} - immutable@4.3.7: resolution: {integrity: sha512-1hqclzwYwjRDFLjcFxOM5AYkkG0rpFPpr1RLPMEuGczoS7YA8gLhy8SWXYRAA/XwfEHpfo3cw5JGioS32fnMRw==} @@ -3053,9 +3025,6 @@ packages: resolution: {integrity: sha512-qOOzS1cBTWYF4BH8fVePDBOO9iptMnGUEZwNc/cMWnTV2nVLZ7VoNWEPHkYczZA0pdoA7dl6e7FL659nX9S2aw==} engines: {node: '>=16 || 14 >=14.17'} - mitt@1.2.0: - resolution: {integrity: sha512-r6lj77KlwqLhIUku9UWYes7KJtsczvolZkzp8hbaDPPaE24OmWl5s539Mytlj22siEQKosZ26qCBgda2PKwoJw==} - mock-socket@9.3.1: resolution: {integrity: sha512-qxBgB7Qa2sEQgHFjj0dSigq7fX4k6Saisd5Nelwp2q8mlbAFh5dHV9JTTlF8viYJLSSWgMCZFUom8PJcMNBoJw==} engines: {node: '>= 8'} @@ -3570,11 +3539,6 @@ packages: peerDependencies: react: '>=16.13.1' - react-lazylog@4.5.3: - resolution: {integrity: sha512-lyov32A/4BqihgXgtNXTHCajXSXkYHPlIEmV8RbYjHIMxCFSnmtdg4kDCI3vATz7dURtiFTvrw5yonHnrS+NNg==} - peerDependencies: - react: '>=16.3.0' - react-lifecycles-compat@3.0.4: resolution: {integrity: sha512-fBASbA6LnOU9dOU2eW7aQ8xmYBSXUIWr+UmF9b1efZBazGNO+rcXT/icdKnYm2pTwcRylVUYwW7H1PHfLekVzA==} @@ -3628,10 +3592,6 @@ packages: peerDependencies: react: '>=16.8' - react-string-replace@0.4.4: - resolution: {integrity: sha512-FAMkhxmDpCsGTwTZg7p/2v+/GTmxAp73so3fbSvlAcBBX36ujiGRNEaM/1u+jiYQrArhns+7eE92g2pi5E5FUA==} - engines: {node: '>=0.12.0'} - react-textarea-autosize@8.5.3: resolution: {integrity: sha512-XT1024o2pqCuZSuBt9FwHlaDeNtVrtCXu0Rnz88t1jUGheCLa3PhjE1GH8Ctm2axEtvdCl5SUHYschyQ0L5QHQ==} engines: {node: '>=10'} @@ -3641,12 +3601,6 @@ packages: react-use-websocket@4.9.0: resolution: {integrity: sha512-/6OaCMggQCTnryCAsw/N+/wfH7bBfIXk5WXTMPdyf0x9HWJXLGUVttAT5hqAimRytD1dkHEJCUrFHAGzOAg1eg==} - react-virtualized@9.22.5: - resolution: {integrity: sha512-YqQMRzlVANBv1L/7r63OHa2b0ZsAaDp1UhVNEdUaXI8A5u6hTpA5NYtUueLH2rFuY/27mTGIBl7ZhqFKzw18YQ==} - peerDependencies: - react: ^15.3.0 || ^16.0.0-alpha || ^17.0.0 || ^18.0.0 - react-dom: ^15.3.0 || ^16.0.0-alpha || ^17.0.0 || ^18.0.0 - react@18.3.1: resolution: {integrity: sha512-wS+hAgJShR0KhEvPJArfuPVN1+Hz1t0Y6n5jLrGQbkb4urgPE/0Rve+1kMB1v/oWgHgm4WIcV+i7F2pTVj+2iQ==} engines: {node: '>=0.10.0'} @@ -3946,9 +3900,6 @@ packages: resolution: {integrity: sha512-pFYqmTw68LXVjeWJMST4+borgQP2AyMNbg1BpZh9LbyhUeNkeaPF9gzfPGUAnSMV3qPYdWUwDIjjCLiSDOl7vg==} engines: {node: '>=18'} - text-encoding-utf-8@1.0.2: - resolution: {integrity: sha512-8bw4MY9WjdsD2aMtO0OzOCY3pXGYNx2d2FfHRVUKkiCPDWjKuOlhLVASS+pD7VkLTVjW268LYJHwsnPFlBpbAg==} - throttle-debounce@5.0.2: resolution: {integrity: sha512-B71/4oyj61iNH0KeCamLuE2rmKuTO5byTOSVwECM5FA7TiAiAW+UqTKZ9ERueC4qvgSttUhdmq1mXC3kJqGX7A==} engines: {node: '>=12.22'} @@ -4321,9 +4272,6 @@ packages: webworker-promise@0.5.0: resolution: {integrity: sha512-14iR79jHAV7ozwvbfif+3wCaApT3I1g8Lo0rJZrwAu6wxZGx/08Y8KXz6as6ZLNUEEufeiEBBYrqyDBClXOsEw==} - whatwg-fetch@2.0.4: - resolution: {integrity: sha512-dcQ1GWpOD/eEQ97k66aiEVpNnapVj90/+R+SXTPYGHpYBBypfKJEQjLrvMZ7YXbKm21gXd4NcuxUTjiv1YtLng==} - whatwg-mimetype@3.0.0: resolution: {integrity: sha512-nt+N2dzIutVRxARx1nghPKGv1xHikU7HKdfafKkLNLindmPU/ch3U31NOCGGA/dmPcmb1VlofO0vnKAcsm0o/Q==} engines: {node: '>=12'} @@ -5452,8 +5400,6 @@ snapshots: transitivePeerDependencies: - debug - '@fontsource/inter@5.0.20': {} - '@icr/polyseg-wasm@0.4.0': {} '@isaacs/cliui@8.0.2': @@ -5527,10 +5473,6 @@ snapshots: dependencies: '@lukeed/csprng': 1.1.0 - '@mattiasbuelens/web-streams-polyfill@0.2.1': - dependencies: - '@types/whatwg-streams': 0.0.7 - '@msgpack/msgpack@2.8.0': {} '@niivue/niivue@0.44.2': @@ -6029,8 +5971,6 @@ snapshots: '@types/webxr@0.5.20': {} - '@types/whatwg-streams@0.0.7': {} - '@ungap/structured-clone@1.2.0': {} '@vitejs/plugin-react-swc@3.7.0(vite@5.4.6(@types/node@22.5.5)(terser@5.33.0))': @@ -6456,8 +6396,6 @@ snapshots: strip-ansi: 6.0.1 wrap-ansi: 6.2.0 - clsx@1.2.1: {} - color-convert@1.9.3: dependencies: color-name: 1.1.3 @@ -6834,8 +6772,6 @@ snapshots: transitivePeerDependencies: - encoding - fetch-readablestream@0.2.0: {} - fflate@0.7.3: {} fflate@0.8.2: {} @@ -7016,8 +6952,6 @@ snapshots: immer@10.1.1: {} - immutable@3.8.2: {} - immutable@4.3.7: {} import-fresh@3.3.0: @@ -7495,8 +7429,6 @@ snapshots: minipass@7.1.2: {} - mitt@1.2.0: {} - mock-socket@9.3.1: {} ms@2.1.2: {} @@ -8125,21 +8057,6 @@ snapshots: jerrypick: 1.1.1 react: 18.3.1 - react-lazylog@4.5.3(react-dom@18.3.1(react@18.3.1))(react@18.3.1): - dependencies: - '@mattiasbuelens/web-streams-polyfill': 0.2.1 - fetch-readablestream: 0.2.0 - immutable: 3.8.2 - mitt: 1.2.0 - prop-types: 15.8.1 - react: 18.3.1 - react-string-replace: 0.4.4 - react-virtualized: 9.22.5(react-dom@18.3.1(react@18.3.1))(react@18.3.1) - text-encoding-utf-8: 1.0.2 - whatwg-fetch: 2.0.4 - transitivePeerDependencies: - - react-dom - react-lifecycles-compat@3.0.4: {} react-overlays@5.2.1(react-dom@18.3.1(react@18.3.1))(react@18.3.1): @@ -8197,10 +8114,6 @@ snapshots: '@remix-run/router': 1.19.2 react: 18.3.1 - react-string-replace@0.4.4: - dependencies: - lodash: 4.17.21 - react-textarea-autosize@8.5.3(@types/react@18.3.4)(react@18.3.1): dependencies: '@babel/runtime': 7.25.4 @@ -8212,17 +8125,6 @@ snapshots: react-use-websocket@4.9.0: {} - react-virtualized@9.22.5(react-dom@18.3.1(react@18.3.1))(react@18.3.1): - dependencies: - '@babel/runtime': 7.25.4 - clsx: 1.2.1 - dom-helpers: 5.2.1 - loose-envify: 1.4.0 - prop-types: 15.8.1 - react: 18.3.1 - react-dom: 18.3.1(react@18.3.1) - react-lifecycles-compat: 3.0.4 - react@18.3.1: dependencies: loose-envify: 1.4.0 @@ -8521,8 +8423,6 @@ snapshots: glob: 10.4.5 minimatch: 9.0.5 - text-encoding-utf-8@1.0.2: {} - throttle-debounce@5.0.2: {} tinybench@2.9.0: {} @@ -8948,8 +8848,6 @@ snapshots: webworker-promise@0.5.0: {} - whatwg-fetch@2.0.4: {} - whatwg-mimetype@3.0.0: {} whatwg-url@5.0.0: From ff0e1074c0ced6d6fa62b48465c13facaf194514 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Fri, 18 Oct 2024 22:10:05 -0400 Subject: [PATCH 312/337] Add side-effects-cache = false to .npmrc see https://github.com/evilmartians/lefthook/blob/master/docs/install.md#-nodejs --- .npmrc | 2 ++ 1 file changed, 2 insertions(+) create mode 100644 .npmrc diff --git a/.npmrc b/.npmrc new file mode 100644 index 000000000..44a9f7dd9 --- /dev/null +++ b/.npmrc @@ -0,0 +1,2 @@ +# see https://github.com/evilmartians/lefthook/blob/master/docs/install.md#-nodejs +side-effects-cache = false From e2e079f39ac0e8f5351656589c51f8a40df31d35 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Fri, 18 Oct 2024 22:10:13 -0400 Subject: [PATCH 313/337] pnpm run fmt --- src/app.css | 1 - src/components/Dashboard/dashboard.css | 1 - src/components/DisplayPage/display-page.css | 3 +-- src/components/NodeDetails/NodeDetails.css | 8 +++----- 4 files changed, 4 insertions(+), 9 deletions(-) diff --git a/src/app.css b/src/app.css index 006abb5b6..5b04aafe5 100644 --- a/src/app.css +++ b/src/app.css @@ -81,4 +81,3 @@ justify-content: center !important; align-items: center !important; } - diff --git a/src/components/Dashboard/dashboard.css b/src/components/Dashboard/dashboard.css index 37afe650b..6e3991cac 100644 --- a/src/components/Dashboard/dashboard.css +++ b/src/components/Dashboard/dashboard.css @@ -2,7 +2,6 @@ color: white; } - .description-section { border-radius: 8px; height: 100%; diff --git a/src/components/DisplayPage/display-page.css b/src/components/DisplayPage/display-page.css index c42a0ebf0..78d052d8c 100644 --- a/src/components/DisplayPage/display-page.css +++ b/src/components/DisplayPage/display-page.css @@ -49,8 +49,7 @@ text-decoration: none; } -.plugin-item-title - { +.plugin-item-title { font-size: 1em; font-weight: 400; } diff --git a/src/components/NodeDetails/NodeDetails.css b/src/components/NodeDetails/NodeDetails.css index c26831ccf..0d97a45c3 100644 --- a/src/components/NodeDetails/NodeDetails.css +++ b/src/components/NodeDetails/NodeDetails.css @@ -165,14 +165,12 @@ } } -.pf-v5-c-log-viewer__main, +.pf-v5-c-log-viewer__main, .pf-v5-c-log-viewer__list { flex-grow: 1 !important; overflow: auto; - } -.pf-v5-c-log-viewer__scroll-container{ - height:100% !important; +.pf-v5-c-log-viewer__scroll-container { + height: 100% !important; } - From a433970810f5d3a38a8f01268e9536db5fd1643a Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Sat, 19 Oct 2024 00:40:21 -0400 Subject: [PATCH 314/337] Increase oxidicom message throttling Fixes false positive of React maximum update depth --- testing/miniChRIS | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/testing/miniChRIS b/testing/miniChRIS index 09edeb5b6..4e85104ba 160000 --- a/testing/miniChRIS +++ b/testing/miniChRIS @@ -1 +1 @@ -Subproject commit 09edeb5b6da3ef8f139250fe2aaaef15dc4479c4 +Subproject commit 4e85104ba1d7272b4bd8b071b263d488b0a31a75 From 229ba91358bac72cbd4e02b7b1de6c1edf62d7f6 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Sat, 19 Oct 2024 01:20:25 -0400 Subject: [PATCH 315/337] Remove p-queue --- package.json | 1 - pnpm-lock.yaml | 23 ----------------------- 2 files changed, 24 deletions(-) diff --git a/package.json b/package.json index 24311c014..ec112ba67 100644 --- a/package.json +++ b/package.json @@ -72,7 +72,6 @@ "micromark": "^4.0.0", "micromark-extension-gfm": "^3.0.0", "niivue-react": "github:niivue/niivue-react", - "p-queue": "^8.0.1", "pako": "^1.0.11", "preval.macro": "^5.0.0", "query-string": "^9.1.0", diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index 4566b1d14..06e8a942e 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -110,9 +110,6 @@ importers: niivue-react: specifier: github:niivue/niivue-react version: https://codeload.github.com/niivue/niivue-react/tar.gz/d7734b88359b61356fec5bfa302e02536e0a1134(@niivue/niivue@0.44.2)(react@18.3.1)(typescript@5.6.2) - p-queue: - specifier: ^8.0.1 - version: 8.0.1 pako: specifier: ^1.0.11 version: 1.0.11 @@ -2420,9 +2417,6 @@ packages: resolution: {integrity: sha512-kVscqXk4OCp68SZ0dkgEKVi6/8ij300KBWTJq32P/dYeWTSwK41WyTxalN1eRmA5Z9UU/LX9D7FWSmV9SAYx6g==} engines: {node: '>=0.10.0'} - eventemitter3@5.0.1: - resolution: {integrity: sha512-GWkBvjiSZK87ELrYOSESUYeVIc9mvLLf/nXalMOS5dYrgZq9o5OVkbZAVM06CVxYsCwH9BDZFPlQTlPA1j4ahA==} - events@3.3.0: resolution: {integrity: sha512-mQw+2fkQbALzQ7V0MY0IqdnXNOeTtP4r0lN9z7AAawCXgqea7bDii20AYrIBrFd/Hx0M2Ocz6S111CaFkUcb0Q==} engines: {node: '>=0.8.x'} @@ -3102,14 +3096,6 @@ packages: resolution: {integrity: sha512-d3qXVTF/s+W+CdJ5A29wywV2n8CQQYahlgz2bFiA+4eVNJbHJodPZ+/gXwPGh0bOqA+j8S+6+ckmvLGPk1QpxQ==} engines: {node: '>=8'} - p-queue@8.0.1: - resolution: {integrity: sha512-NXzu9aQJTAzbBqOt2hwsR63ea7yvxJc0PwN/zobNAudYfb1B7R08SzB4TsLeSbUCuG467NhnoT0oO6w1qRO+BA==} - engines: {node: '>=18'} - - p-timeout@6.1.2: - resolution: {integrity: sha512-UbD77BuZ9Bc9aABo74gfXhNvzC9Tx7SxtHSh1fxvx3jTLLYvmVhiQZZrJzqqU0jKbN32kb5VOKiLEQI/3bIjgQ==} - engines: {node: '>=14.16'} - p-try@2.2.0: resolution: {integrity: sha512-R4nPAVTAU0B9D35/Gk3uJf/7XYbQcyohSKdvAxIRSNghFl4e71hVoGnBNQz9cWaXxO2I10KTC+3jMdvvoKw6dQ==} engines: {node: '>=6'} @@ -6744,8 +6730,6 @@ snapshots: esutils@2.0.3: {} - eventemitter3@5.0.1: {} - events@3.3.0: {} fast-deep-equal@3.1.3: {} @@ -7514,13 +7498,6 @@ snapshots: dependencies: aggregate-error: 3.1.0 - p-queue@8.0.1: - dependencies: - eventemitter3: 5.0.1 - p-timeout: 6.1.2 - - p-timeout@6.1.2: {} - p-try@2.2.0: {} package-hash@4.0.0: From 5041d79e65e4f17ef500dfc38aa7f2452a4f3402 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Mon, 21 Oct 2024 11:05:04 -0400 Subject: [PATCH 316/337] Upgrade pnpm to 9.12.2 --- package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/package.json b/package.json index ec112ba67..53d67e559 100644 --- a/package.json +++ b/package.json @@ -132,5 +132,5 @@ "vitest-websocket-mock": "^0.4.0" }, "type": "module", - "packageManager": "pnpm@9.11.0+sha512.0a203ffaed5a3f63242cd064c8fb5892366c103e328079318f78062f24ea8c9d50bc6a47aa3567cabefd824d170e78fa2745ed1f16b132e16436146b7688f19b" + "packageManager": "pnpm@9.12.2+sha512.22721b3a11f81661ae1ec68ce1a7b879425a1ca5b991c975b074ac220b187ce56c708fe5db69f4c962c989452eee76c82877f4ee80f474cebd61ee13461b6228" } From 83765c1b888cdfcce51190a7cd9a31c78296a6a0 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Mon, 21 Oct 2024 20:18:47 -0400 Subject: [PATCH 317/337] refactor: Update the regression in tooling --- .../FeedOutputBrowser/FileBrowser.tsx | 4 +- .../NewLibrary/components/LibraryTable.tsx | 10 +- .../Preview/displays/DcmDisplay.tsx | 93 +++++++++++-------- 3 files changed, 63 insertions(+), 44 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 4a6378caf..9e1d9b355 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -238,9 +238,7 @@ const FileBrowser = (props: FileBrowserProps) => { <Th aria-label="file-creator" width={20}> {columnNames.created} </Th> - <Th aria-label="file-owner" width={20}> - {columnNames.creator} - </Th> + <Th aria-label="file-size" width={20}> {columnNames.size} </Th> diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 0c7ed67cb..34d4f5b77 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -119,6 +119,7 @@ const BaseRow: React.FC<RowProps> = ({ handleFileClick(); } }; + const path = type === "folder" || type === "link" ? resource.data.path @@ -170,9 +171,12 @@ const BaseRow: React.FC<RowProps> = ({ <Td dataLabel={columnNames.date} modifier="truncate"> <TruncatedText text={format(new Date(date), "dd MMM yyyy, HH:mm")} /> </Td> - <Td dataLabel={columnNames.owner} modifier="truncate"> - <TruncatedText text={owner} /> - </Td> + {origin.type !== "fileBrowser" && ( + <Td dataLabel={columnNames.owner} modifier="truncate"> + <TruncatedText text={owner} /> + </Td> + )} + <Td dataLabel={columnNames.size} modifier="truncate"> {size > 0 ? formatBytes(size, 0) : " "} </Td> diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 09933afbb..d33d110fa 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -11,6 +11,7 @@ import { loadDicomImage, setUpTooling, events, + handleEvents, } from "./dicomUtils/utils"; import type { IStackViewport } from "./dicomUtils/utils"; import { Button } from "@patternfly/react-core"; @@ -40,6 +41,7 @@ const DcmDisplay = (props: DcmImageProps) => { fetchMore, preview, filesLoading, + actionState, } = props; // State variables @@ -328,7 +330,7 @@ const DcmDisplay = (props: DcmImageProps) => { if ( filteredList && - newIndex >= filteredList.length - 5 && + newIndex >= filteredList.length - 15 && fetchMore && !filesLoading && !isLoadingMore && @@ -388,7 +390,8 @@ const DcmDisplay = (props: DcmImageProps) => { if ( cineIntervalIdRef.current || !activeViewportRef.current || - !imageStack[fname] + !imageStack[fname] || + imageCount <= 1 ) return; @@ -409,7 +412,7 @@ const DcmDisplay = (props: DcmImageProps) => { * Manage cine playback based on `isPlaying` state. */ useEffect(() => { - if (isPlaying) { + if (isPlaying && imageCount > 1) { startCinePlay(); } else { stopCinePlay(); @@ -417,7 +420,15 @@ const DcmDisplay = (props: DcmImageProps) => { return () => { stopCinePlay(); }; - }, [isPlaying, startCinePlay, stopCinePlay]); + }, [isPlaying, startCinePlay, stopCinePlay, imageCount]); + + /* Manage Tooling */ + + useEffect(() => { + if (actionState && activeViewportRef.current) { + handleEvents(actionState, activeViewportRef.current); + } + }, [actionState]); return ( <> @@ -438,41 +449,47 @@ const DcmDisplay = (props: DcmImageProps) => { }} > {/* Current Index Display */} - <div - style={{ - color: "#fff", - marginBottom: "0.5em", - fontFamily: "monospace", // Use monospaced font - }} - > - {`Current Index: ${currentIndexDisplay}/${imageCountDisplay}`} - </div> - - {/* Play/Pause Button */} - <div style={{ marginBottom: "0.5em" }}> - <Button - variant="control" - size="sm" - onClick={() => setIsPlaying(!isPlaying)} + {imageCount > 1 && ( + <div + style={{ + color: "#fff", + marginBottom: "0.5em", + fontFamily: "monospace", // Use monospaced font + }} > - {isPlaying ? "Pause" : "Play"} - </Button> - </div> - - {/* Playback Speed Control */} - <div style={{ color: "#fff", marginBottom: "0.5em" }}> - <label> - Speed: - <input - type="number" - value={playbackSpeed} - min="1" - max="60" - onChange={(e) => setPlaybackSpeed(Number(e.target.value))} - /> - fps - </label> - </div> + {`Current Index: ${currentIndexDisplay}/${imageCountDisplay}`} + </div> + )} + + {imageCount > 1 && ( + <> + {/* Play/Pause Button */} + <div style={{ marginBottom: "0.5em" }}> + <Button + variant="control" + size="sm" + onClick={() => setIsPlaying(!isPlaying)} + > + {isPlaying ? "Pause" : "Play"} + </Button> + </div> + + {/* Playback Speed Control */} + <div style={{ color: "#fff", marginBottom: "0.5em" }}> + <label> + Speed: + <input + type="number" + value={playbackSpeed} + min="1" + max="60" + onChange={(e) => setPlaybackSpeed(Number(e.target.value))} + /> + fps + </label> + </div> + </> + )} {/* Loading More Indicator */} {isLoadingMore && ( From b7e528dc4bb7e8fccd8c675b67c261fe02a5c201 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Mon, 21 Oct 2024 20:40:47 -0400 Subject: [PATCH 318/337] feat: Update the placement of the play/pause control for the cine player --- src/app.css | 14 +++--- src/components/Icons/index.tsx | 4 ++ src/components/Preview/FileDetailView.tsx | 19 +++++++- .../Preview/displays/DcmDisplay.tsx | 47 ++++--------------- .../Preview/displays/IframeDisplay.tsx | 2 +- 5 files changed, 39 insertions(+), 47 deletions(-) diff --git a/src/app.css b/src/app.css index 5b04aafe5..6b79447e8 100644 --- a/src/app.css +++ b/src/app.css @@ -63,21 +63,23 @@ } .small-button { - width: 20px; - height: 20px; - font-size: 12px; + width: 16px; + height: 16px; + font-size: 0.8rem } .large-button { - width: 40px; - height: 40px; + width: 24px; + height: 24px; + font-size:1rem; } .button-style { border-radius: 50% !important; - padding: 1rem !important; + padding: 1rem !important; /* Remove default padding */ border: none !important; display: flex !important; justify-content: center !important; align-items: center !important; + line-height:0 !important } diff --git a/src/components/Icons/index.tsx b/src/components/Icons/index.tsx index 90280dce7..2767d31ec 100644 --- a/src/components/Icons/index.tsx +++ b/src/components/Icons/index.tsx @@ -33,6 +33,8 @@ import { BarsIcon, GripVerticalIcon, ToolsIcon, + PlayIcon, + PauseIcon, } from "@patternfly/react-icons"; const CartIcon = ({ @@ -310,4 +312,6 @@ export { BarsIcon, GripVerticalIcon, ToolsIcon, + PlayIcon, + PauseIcon, }; diff --git a/src/components/Preview/FileDetailView.tsx b/src/components/Preview/FileDetailView.tsx index 6f887151e..d29d11be2 100644 --- a/src/components/Preview/FileDetailView.tsx +++ b/src/components/Preview/FileDetailView.tsx @@ -29,11 +29,13 @@ import { AddIcon, BrightnessIcon, InfoIcon, + PlayIcon, RotateIcon, RulerIcon, SearchIcon, ZoomIcon, -} from "../Icons"; + PauseIcon, +} from "../Icons"; // Import PlayIcon import { TagInfoModal } from "./HelperComponent"; import { dumpDataSet } from "./displays/dicomUtils/dicomDict"; @@ -277,6 +279,10 @@ const actions = [ name: "TagInfo", icon: <InfoIcon />, }, + { + name: "Play", + icon: <PlayIcon />, // Add Play icon + }, ]; const getViewerSpecificActions: { @@ -315,6 +321,13 @@ export const DicomHeader = ({ md: "spacerMd", sm: "spacerSm", }; + + // Dynamically set the icon for Play/Pause button + let icon = action.icon; + if (action.name === "Play") { + icon = actionState.Play ? <PauseIcon /> : <PlayIcon />; + } + return ( <ToolbarItem spacer={spacer} key={action.name}> <Tooltip content={<span>{action.name}</span>}> @@ -325,12 +338,14 @@ export const DicomHeader = ({ variant={ actionState[action.name] === true ? "primary" : "control" } - icon={action.icon} + size="sm" + icon={icon} onClick={(ev) => { const previouslyActive = Object.keys(actionState)[0]; ev.preventDefault(); handleEvents(action.name, previouslyActive); }} + aria-label={action.name} /> </Tooltip> </ToolbarItem> diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index d33d110fa..4631cf2e8 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -14,7 +14,6 @@ import { handleEvents, } from "./dicomUtils/utils"; import type { IStackViewport } from "./dicomUtils/utils"; -import { Button } from "@patternfly/react-core"; export type DcmImageProps = { selectedFile: IFileBlob; @@ -50,8 +49,9 @@ const DcmDisplay = (props: DcmImageProps) => { const [multiFrameDisplay, setMultiFrameDisplay] = useState(false); const [isLoadingMore, setIsLoadingMore] = useState(false); const [lastLoadedIndex, setLastLoadedIndex] = useState(0); - const [isPlaying, setIsPlaying] = useState(false); - const [playbackSpeed, setPlaybackSpeed] = useState(24); // frames per second + // Remove isPlaying and playbackSpeed states + // const [isPlaying, setIsPlaying] = useState(false); + // const [playbackSpeed, setPlaybackSpeed] = useState(24); // frames per second // Refs const dicomImageRef = useRef<HTMLDivElement>(null); @@ -395,7 +395,8 @@ const DcmDisplay = (props: DcmImageProps) => { ) return; - const frameDuration = 1000 / playbackSpeed; // Calculate frame duration in milliseconds + const defaultPlaybackSpeed = 24; // Use default playback speed (fps) + const frameDuration = 1000 / defaultPlaybackSpeed; // Calculate frame duration in milliseconds cineIntervalIdRef.current = setInterval(() => { if (activeViewportRef.current) { @@ -406,12 +407,13 @@ const DcmDisplay = (props: DcmImageProps) => { setCurrentImageIndex(currentIndex); } }, frameDuration); - }, [playbackSpeed, imageStack, fname, imageCount]); + }, [imageStack, fname, imageCount]); /** - * Manage cine playback based on `isPlaying` state. + * Manage cine playback based on `actionState["Play"]` state. */ useEffect(() => { + const isPlaying = actionState.Play === true; if (isPlaying && imageCount > 1) { startCinePlay(); } else { @@ -420,10 +422,9 @@ const DcmDisplay = (props: DcmImageProps) => { return () => { stopCinePlay(); }; - }, [isPlaying, startCinePlay, stopCinePlay, imageCount]); + }, [actionState.Play, startCinePlay, stopCinePlay, imageCount]); /* Manage Tooling */ - useEffect(() => { if (actionState && activeViewportRef.current) { handleEvents(actionState, activeViewportRef.current); @@ -461,36 +462,6 @@ const DcmDisplay = (props: DcmImageProps) => { </div> )} - {imageCount > 1 && ( - <> - {/* Play/Pause Button */} - <div style={{ marginBottom: "0.5em" }}> - <Button - variant="control" - size="sm" - onClick={() => setIsPlaying(!isPlaying)} - > - {isPlaying ? "Pause" : "Play"} - </Button> - </div> - - {/* Playback Speed Control */} - <div style={{ color: "#fff", marginBottom: "0.5em" }}> - <label> - Speed: - <input - type="number" - value={playbackSpeed} - min="1" - max="60" - onChange={(e) => setPlaybackSpeed(Number(e.target.value))} - /> - fps - </label> - </div> - </> - )} - {/* Loading More Indicator */} {isLoadingMore && ( <div style={{ color: "#fff" }}> diff --git a/src/components/Preview/displays/IframeDisplay.tsx b/src/components/Preview/displays/IframeDisplay.tsx index b85a47201..da584262d 100644 --- a/src/components/Preview/displays/IframeDisplay.tsx +++ b/src/components/Preview/displays/IframeDisplay.tsx @@ -25,7 +25,7 @@ const IframeDisplay: React.FC<IframeDisplayProps> = ({ return () => { URL.revokeObjectURL(url); }; - }, [selectedFile]); + }, [url, selectedFile]); return ( <Fragment> From 8fec853ceac222d9633b67852f98b0fd6136d24b Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 23 Oct 2024 16:42:45 -0400 Subject: [PATCH 319/337] feat: Optimize Dicom Display --- package.json | 1 + pnpm-lock.yaml | 60 + .../FeedOutputBrowser/FileBrowser.tsx | 13 +- src/components/FeedOutputBrowser/types.ts | 4 + src/components/Preview/FileDetailView.tsx | 66 +- .../Preview/displays/DcmDisplay.tsx | 201 +- .../displays/dicomUtils/dataDictionary.ts | 28575 ---------------- .../Preview/displays/dicomUtils/dicomDict.ts | 479 - .../dicomUtils/hardcodedMetaDataProvider.ts | 72 - .../Preview/displays/dicomUtils/utils.ts | 64 +- .../displays/dicomUtils/webImageLoader.ts | 268 - src/types/index.d.ts | 1 + 12 files changed, 261 insertions(+), 29543 deletions(-) delete mode 100644 src/components/Preview/displays/dicomUtils/dataDictionary.ts delete mode 100644 src/components/Preview/displays/dicomUtils/dicomDict.ts delete mode 100644 src/components/Preview/displays/dicomUtils/hardcodedMetaDataProvider.ts delete mode 100644 src/components/Preview/displays/dicomUtils/webImageLoader.ts diff --git a/package.json b/package.json index ec112ba67..62c2eeb6d 100644 --- a/package.json +++ b/package.json @@ -62,6 +62,7 @@ "d3-shape": "^3.2.0", "d3-zoom": "^3.0.0", "date-fns": "^4.1.0", + "dcmjs": "^0.34.5", "dicom-parser": "^1.8.21", "email-validator": "^2.0.4", "fp-ts": "^2.16.9", diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index 06e8a942e..16df9a696 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -80,6 +80,9 @@ importers: date-fns: specifier: ^4.1.0 version: 4.1.0 + dcmjs: + specifier: ^0.34.5 + version: 0.34.5 dicom-parser: specifier: ^1.8.21 version: 1.8.21 @@ -900,6 +903,10 @@ packages: '@babel/regjsgen@0.8.0': resolution: {integrity: sha512-x/rqGMdzj+fWZvCOYForTghzbtqPDZ5gPwaoNGHdgDfF2QA/XZbCBp4Moo5scrkAMPhB7z26XM/AaHuIJdgauA==} + '@babel/runtime-corejs3@7.25.9': + resolution: {integrity: sha512-eHeq2HWhgn3aH6Gz4Dnajqp8U5DjBg3h933LlGJ52hAN6Kx34KAL7O3NzwTrldl9PrgKTyBcz0ScVIQ3A6e2fA==} + engines: {node: '>=6.9.0'} + '@babel/runtime@7.22.11': resolution: {integrity: sha512-ee7jVNlWN09+KftVOu9n7S8gQzD/Z6hN/I8VBRXW4P1+Xe7kJGXMwu8vds4aGIMHZnNbdpSWCfZZtinytpcAvA==} engines: {node: '>=6.9.0'} @@ -1846,6 +1853,10 @@ packages: engines: {node: '>=0.4.0'} hasBin: true + adm-zip@0.5.16: + resolution: {integrity: sha512-TGw5yVi4saajsSEgz25grObGHEUaDrniwvA2qwSC060KfqGPdglhvPMA2lPIoxs3PQIItj2iag35fONcQqgUaQ==} + engines: {node: '>=12.0'} + aggregate-error@3.1.0: resolution: {integrity: sha512-4I7Td01quW/RpocfNayFdFVk1qSuoh0E7JrbRJ16nH01HhKFQ88INq9Sd+nd72zqRySlr9BmDA8xlEJ6vJMrYA==} engines: {node: '>=8'} @@ -2099,6 +2110,9 @@ packages: core-js-compat@3.38.1: resolution: {integrity: sha512-JRH6gfXxGmrzF3tZ57lFx97YARxCXPaMzPo6jELZhv88pBH5VXpQ+y0znKGlFnzuaihqhLbefxSJxWJMPtfDzw==} + core-js-pure@3.38.1: + resolution: {integrity: sha512-BY8Etc1FZqdw1glX0XNOq2FDwfrg/VGqoZOZCdaL+UmdaqDwQwYXkMJT4t6In+zfEfOJDcM9T0KdbBeJg8KKCQ==} + core-js@3.38.1: resolution: {integrity: sha512-OP35aUorbU3Zvlx7pjsFdu1rGNnD4pgw/CWoYzRY3t2EzoVT7shKHY1dlAy3f41cGIO7ZDPQimhGFTlEYkG/Hw==} @@ -2222,6 +2236,9 @@ packages: dayjs@1.11.13: resolution: {integrity: sha512-oaMBel6gjolK862uaPQOVTA7q3TZhuSvuMQAAglQDOWYO9A91IrAOUJEyKVlqJlHE0vq5p5UXxzdPfMH/x6xNg==} + dcmjs@0.34.5: + resolution: {integrity: sha512-a2m9lnvdQuKA0YllwymDiOOv7LEv43Vno9QyIP78QWKRc0azoMKxFpti9ynFy2zf2bcapEwaD9OzYes39FukVQ==} + debug@4.3.6: resolution: {integrity: sha512-O/09Bd4Z1fBrU4VzkhFqVgpPzaGbw6Sm9FEkBT1A/YBXQFGuuSxa1dN2nxgxS34JmKXqYx8CZAwEVoJFImUXIg==} engines: {node: '>=6.0'} @@ -2650,9 +2667,15 @@ packages: invariant@2.2.4: resolution: {integrity: sha512-phJfQVBuaJM5raOpJjSfkiD6BpbCE4Ns//LaXl6wGYtUBY83nWS6Rf9tXm2e8VaK60JEjYldbPif/A2B1C2gNA==} + iota-array@1.0.0: + resolution: {integrity: sha512-pZ2xT+LOHckCatGQ3DcG/a+QuEqvoxqkiL7tvE8nn3uuu+f6i1TtpB5/FtWFbxUuVr5PZCx8KskuGatbJDXOWA==} + is-arrayish@0.2.1: resolution: {integrity: sha512-zz06S8t0ozoDXMG+ube26zeCTNXcKIPJZJi8hBrF4idCLms4CG9QtK7qBl1boi5ODzFpjswb5JPmHCbMpjaYzg==} + is-buffer@1.1.6: + resolution: {integrity: sha512-NcdALwpXkTm5Zvvbk7owOUSvVvBKDgKP5/ewfXEznmQFfs4ZRmanOeKBTjRVjka3QFoN6XJ+9F3USqfHqTaU5w==} + is-core-module@2.15.1: resolution: {integrity: sha512-z0vtXSwucUJtANQWldhbtbt7BnL0vxiFjIdDLAatwhDYty2bad6s+rijD6Ri4YuYJubLzIJLUidCh09e1djEVQ==} engines: {node: '>= 0.4'} @@ -2867,6 +2890,10 @@ packages: lodash@4.17.21: resolution: {integrity: sha512-v2kDEe57lecTulaDIuNTPy3Ry4gLGJ6Z1O3vE1krgXZNrsQ+LFTGHVxVjcXPs17LhbZVGedAJv8XZ1tvj5FvSg==} + loglevel@1.9.2: + resolution: {integrity: sha512-HgMmCqIJSAKqo68l0rS2AanEWfkxaZ5wNiEFb5ggm08lDs9Xl2KxBlX3PTcaD2chBM1gXAYf491/M2Rv8Jwayg==} + engines: {node: '>= 0.6.0'} + loose-envify@1.4.0: resolution: {integrity: sha512-lyuxPGr/Wfhrlem2CL/UcnUc1zcqKAImBDzukY7Y5F/yQiNdko6+fRLevlw1HgMySw7f611UIY408EtxRSoK3Q==} hasBin: true @@ -3034,6 +3061,9 @@ packages: engines: {node: ^10 || ^12 || ^13.7 || ^14 || >=15.0.1} hasBin: true + ndarray@1.0.19: + resolution: {integrity: sha512-B4JHA4vdyZU30ELBw3g7/p9bZupyew5a7tX1Y/gGeF2hafrPaQZhgrGQfsvgfYbgdFZjYwuEcnaobeM/WMW+HQ==} + neo-async@2.6.2: resolution: {integrity: sha512-Yd3UES5mWCSqR+qNT93S3UoYUkqAZ9lLg8a7g9rimsWmYGK8cVToA4/sF3RrshdyV3sAGMXVUmpMYOw+dLpOuw==} @@ -5144,6 +5174,11 @@ snapshots: '@babel/regjsgen@0.8.0': {} + '@babel/runtime-corejs3@7.25.9': + dependencies: + core-js-pure: 3.38.1 + regenerator-runtime: 0.14.1 + '@babel/runtime@7.22.11': dependencies: regenerator-runtime: 0.14.1 @@ -6122,6 +6157,8 @@ snapshots: acorn@8.12.1: {} + adm-zip@0.5.16: {} + aggregate-error@3.1.0: dependencies: clean-stack: 2.2.0 @@ -6424,6 +6461,8 @@ snapshots: dependencies: browserslist: 4.23.3 + core-js-pure@3.38.1: {} + core-js@3.38.1: {} cosmiconfig@7.1.0: @@ -6551,6 +6590,16 @@ snapshots: dayjs@1.11.13: {} + dcmjs@0.34.5: + dependencies: + '@babel/runtime-corejs3': 7.25.9 + adm-zip: 0.5.16 + gl-matrix: 3.4.3 + lodash.clonedeep: 4.5.0 + loglevel: 1.9.2 + ndarray: 1.0.19 + pako: 2.1.0 + debug@4.3.6: dependencies: ms: 2.1.2 @@ -6964,8 +7013,12 @@ snapshots: dependencies: loose-envify: 1.4.0 + iota-array@1.0.0: {} + is-arrayish@0.2.1: {} + is-buffer@1.1.6: {} + is-core-module@2.15.1: dependencies: hasown: 2.0.2 @@ -7165,6 +7218,8 @@ snapshots: lodash@4.17.21: {} + loglevel@1.9.2: {} + loose-envify@1.4.0: dependencies: js-tokens: 4.0.0 @@ -7421,6 +7476,11 @@ snapshots: nanoid@3.3.7: {} + ndarray@1.0.19: + dependencies: + iota-array: 1.0.0 + is-buffer: 1.1.6 + neo-async@2.6.2: {} nifti-reader-js@0.6.8: diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 9e1d9b355..56363f868 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -74,9 +74,14 @@ const FileBrowser = (props: FileBrowserProps) => { const selectedFile = useAppSelector((state) => state.explorer.selectedFile); const drawerState = useAppSelector((state) => state.drawers); const username = useAppSelector((state) => state.user.username); - const { subFoldersMap, linkFilesMap, filesMap } = pluginFilesPayload; + const { subFoldersMap, linkFilesMap, filesMap, filesPagination, folderList } = + pluginFilesPayload; const breadcrumb = additionalKey.split("/"); const currentPath = `home/${username}/feeds/feed_${feed?.data.id}/${selected?.data.plugin_name}_${selected?.data.id}/data`; + const noFiles = + filesMap?.length === 0 && + subFoldersMap?.length === 0 && + linkFilesMap?.length === 0; useEffect(() => { if (isSuccess) { @@ -191,7 +196,7 @@ const FileBrowser = (props: FileBrowserProps) => { }} origin={origin} computedPath={additionalKey} - folderList={pluginFilesPayload.folderList} + folderList={folderList} /> <div className="file-browser__header"> <div className="file-browser__header--breadcrumbContainer"> @@ -245,7 +250,7 @@ const FileBrowser = (props: FileBrowserProps) => { </Tr> </Thead> <Tbody> - {isLoading ? ( + {isLoading && noFiles ? ( renderSkeletonRows() ) : ( <> @@ -353,7 +358,7 @@ const FileBrowser = (props: FileBrowserProps) => { gallery={true} selectedFile={selectedFile} preview="large" - list={pluginFilesPayload.filesMap} + list={filesMap} fetchMore={fetchMore} handlePagination={handlePagination} filesLoading={isLoading} diff --git a/src/components/FeedOutputBrowser/types.ts b/src/components/FeedOutputBrowser/types.ts index cbdb80bab..1482294af 100644 --- a/src/components/FeedOutputBrowser/types.ts +++ b/src/components/FeedOutputBrowser/types.ts @@ -12,6 +12,10 @@ export interface FilesPayload { subFoldersMap?: FileBrowserFolder[]; linkFilesMap?: FileBrowserFolderLinkFile[]; folderList?: FileBrowserFolderList; + filesPagination?: { + totalCount: number; + hasNextPage: boolean; + }; } export interface FileBrowserProps { diff --git a/src/components/Preview/FileDetailView.tsx b/src/components/Preview/FileDetailView.tsx index d29d11be2..62df056a0 100644 --- a/src/components/Preview/FileDetailView.tsx +++ b/src/components/Preview/FileDetailView.tsx @@ -9,7 +9,7 @@ import { } from "@patternfly/react-core"; import ResetIcon from "@patternfly/react-icons/dist/esm/icons/history-icon"; import { useMutation } from "@tanstack/react-query"; -import * as dicomParser from "dicom-parser"; +import * as dcmjs from "dcmjs"; import React, { Fragment, useCallback, @@ -19,9 +19,9 @@ import React, { } from "react"; import { ErrorBoundary } from "react-error-boundary"; import { + type IFileBlob, fileViewerMap, getFileExtension, - type IFileBlob, } from "../../api/model"; import { useAppSelector } from "../../store/hooks"; import { SpinContainer } from "../Common"; @@ -29,15 +29,14 @@ import { AddIcon, BrightnessIcon, InfoIcon, + PauseIcon, PlayIcon, RotateIcon, RulerIcon, SearchIcon, ZoomIcon, - PauseIcon, } from "../Icons"; // Import PlayIcon import { TagInfoModal } from "./HelperComponent"; -import { dumpDataSet } from "./displays/dicomUtils/dicomDict"; const ViewerDisplay = React.lazy(() => import("./displays/ViewerDisplay")); @@ -98,45 +97,36 @@ const FileDetailView = (props: AllProps) => { }; }, [handleKeyboardEvents]); - const displayTagInfo = useCallback(async (result: any) => { - const reader = new FileReader(); - - reader.onloadend = async () => { - try { - if (reader.result) { - const byteArray = new Uint8Array(reader.result as ArrayBuffer); - const testOutput: any[] = []; - const output: any[] = []; - const dataSet = dicomParser.parseDicom(byteArray); - dumpDataSet(dataSet, output, testOutput); - const merged = Object.assign({}, ...testOutput); - setTagInfo(merged); - } - } catch (error) { - setParsingError("Failed to parse the file for dicom tags"); - return { - blob: undefined, - file: undefined, - fileType: "", - }; - } - }; - - if (result) { + const displayTagInfo = useCallback(async () => { + try { const blob = await selectedFile?.getFileBlob(); - if (blob) { - reader.readAsArrayBuffer(blob); - } else { - throw new Error("Failed to parse the file for dicom tags"); + if (!blob) { + setParsingError("Failed to retrieve the file blob"); + return; } + + const arrayBuffer = await blob.arrayBuffer(); + const dicomData = dcmjs.data.DicomMessage.readFile(arrayBuffer); + const dataset = dcmjs.data.DicomMetaDictionary.naturalizeDataset( + dicomData.dict, + ); + // Sort the dataset keys alphabetically + const sortedDataset = Object.keys(dataset) + .sort() + .reduce((sortedObj: any, key) => { + sortedObj[key] = dataset[key]; + return sortedObj; + }, {}); + + setTagInfo(sortedDataset); + } catch (error) { + console.error("Error parsing DICOM file:", error); + setParsingError("Failed to parse the file for DICOM tags"); } }, []); const mutation = useMutation({ - mutationFn: async (selectedFile: FileBrowserFolderFile | PACSFile) => { - await displayTagInfo(selectedFile); - }, - + mutationFn: displayTagInfo, onError: (error: any) => { setParsingError(error.message); }, @@ -156,7 +146,7 @@ const FileDetailView = (props: AllProps) => { const handleEvents = (action: string, previouslyActive: string) => { if (action === "TagInfo" && selectedFile) { - mutation.mutate(selectedFile); + mutation.mutate(); } const currentAction = actionState[action]; setActionState({ diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 4631cf2e8..414f6c31d 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -1,17 +1,18 @@ import type { RenderingEngine } from "@cornerstonejs/core"; import { useQuery } from "@tanstack/react-query"; -import { useCallback, useEffect, useRef, useState, useMemo } from "react"; -import { getFileExtension, type IFileBlob } from "../../../api/model"; +import { useCallback, useEffect, useMemo, useRef, useState } from "react"; +import { type IFileBlob, getFileExtension } from "../../../api/model"; +import { notification } from "../../Antd"; import { SpinContainer } from "../../Common"; import useSize from "../../FeedTree/useSize"; import type { ActionState } from "../FileDetailView"; import { + events, basicInit, displayDicomImage, + handleEvents, loadDicomImage, setUpTooling, - events, - handleEvents, } from "./dicomUtils/utils"; import type { IStackViewport } from "./dicomUtils/utils"; @@ -49,9 +50,6 @@ const DcmDisplay = (props: DcmImageProps) => { const [multiFrameDisplay, setMultiFrameDisplay] = useState(false); const [isLoadingMore, setIsLoadingMore] = useState(false); const [lastLoadedIndex, setLastLoadedIndex] = useState(0); - // Remove isPlaying and playbackSpeed states - // const [isPlaying, setIsPlaying] = useState(false); - // const [playbackSpeed, setPlaybackSpeed] = useState(24); // frames per second // Refs const dicomImageRef = useRef<HTMLDivElement>(null); @@ -110,79 +108,114 @@ const DcmDisplay = (props: DcmImageProps) => { [list], ); + /** + * Find the index of the selected file in the filtered list. + */ + const selectedIndex = useMemo( + () => + filteredList?.findIndex((file) => file.data.id === selectedFile.data.id), + [filteredList, selectedFile.data.id], + ); + /** * Preview the selected DICOM file. * If the image is already cached, it uses the cached data. * Otherwise, it loads the image and caches it. */ const previewFile = useCallback(async () => { - if (!elementRef.current) return {}; - - const existingImageEntry = cacheStack?.[fname]; - - if (existingImageEntry && activeViewportRef.current) { - // Image is already cached - let imageIDs: string[]; - let index: number; - - if (Array.isArray(existingImageEntry)) { - // Multi-frame image - imageIDs = existingImageEntry; - index = currentImageIndex; - setMultiFrameDisplay(true); - } else { - // Single-frame images - imageIDs = Object.values(cacheStack).flat() as string[]; - index = imageIDs.findIndex((id) => id === existingImageEntry); - setMultiFrameDisplay(false); + try { + if (!elementRef.current) return {}; + const existingImageEntry = cacheStack?.[fname]; + + if (existingImageEntry && activeViewportRef.current) { + // Image is already cached + let imageIDs: string[]; + let index: number; + + if (Array.isArray(existingImageEntry)) { + // Multi-frame image + imageIDs = existingImageEntry; + index = currentImageIndex; + setMultiFrameDisplay(true); + } else { + // Single-frame images + imageIDs = Object.values(cacheStack).flat() as string[]; + index = imageIDs.findIndex((id) => id === existingImageEntry); + setMultiFrameDisplay(false); + } + + await activeViewportRef.current.setStack( + imageIDs, + index !== -1 ? index : 0, + ); + activeViewportRef.current.render(); + setCurrentImageIndex(index); + return cacheStack; } - await activeViewportRef.current.setStack( - imageIDs, - index !== -1 ? index : 0, + // Load new image if not in cache + const blob = await selectedFile.getFileBlob(); + const imageData = await loadDicomImage(blob); + const { framesCount, imageID } = imageData; + + const framesList = + framesCount > 1 + ? Array.from( + { length: framesCount }, + (_, i) => `${imageID}?frame=${i}`, + ) + : imageID; + + const newImageStack: ImageStackType = { + [fname]: framesList, + }; + + const elementId = `cornerstone-element-${fname}`; + const { viewport, renderingEngine } = await displayDicomImage( + elementRef.current, + framesCount > 1 ? framesList[0] : imageID, + elementId, ); - activeViewportRef.current.render(); - return cacheStack; + setMultiFrameDisplay(framesCount > 1); + activeViewportRef.current = viewport; + renderingEngineRef.current = renderingEngine; + setImageStack(newImageStack); + setCurrentImageIndex(selectedIndex); + cacheRef.current[CACHE_KEY] = newImageStack; + return newImageStack; + } catch (e) { + // biome-ignore lint/complexity/noUselessCatch: <explanation> + throw e; } - - // Load new image if not in cache - const blob = await selectedFile.getFileBlob(); - const imageData = await loadDicomImage(blob); - const { framesCount, imageID } = imageData; - - const framesList = - framesCount > 1 - ? Array.from({ length: framesCount }, (_, i) => `${imageID}?frame=${i}`) - : imageID; - - const newImageStack: ImageStackType = { - [fname]: framesList, - }; - - const elementId = `cornerstone-element-${fname}`; - const { viewport, renderingEngine } = await displayDicomImage( - elementRef.current, - framesCount > 1 ? framesList[0] : imageID, - elementId, - ); - - setMultiFrameDisplay(framesCount > 1); - activeViewportRef.current = viewport; - renderingEngineRef.current = renderingEngine; - - setImageStack(newImageStack); - cacheRef.current[CACHE_KEY] = newImageStack; - return newImageStack; - }, [selectedFile, cacheStack, fname, currentImageIndex]); + }, [ + selectedFile, + cacheStack, + fname, + currentImageIndex, + selectedIndex, + displayDicomImage, + loadDicomImage, + ]); // Use React Query to fetch and cache the preview data - const { isLoading, data } = useQuery({ + const { isLoading, data, isError, error } = useQuery({ queryKey: ["cornerstone-preview", fname], queryFn: previewFile, enabled: !!selectedFile && !!elementRef.current, }); + useEffect(() => { + if (isError) { + notification.error({ + message: "Error Loading DICOM Image", + description: + (error as Error)?.message || + "An error occurred while loading the DICOM Image", + }); + } + }, [isError, error]); + /** * Stop cine playback. */ @@ -229,7 +262,10 @@ const DcmDisplay = (props: DcmImageProps) => { /** * Generator function to yield image files starting from a specific index. */ - function* imageFileGenerator(list: IFileBlob[], startIndex: number) { + function* imageFileGenerator( + list: IFileBlob[], + startIndex: number, + ): Generator<IFileBlob> { for (let i = startIndex; i < list.length; i++) { yield list[i]; } @@ -245,10 +281,8 @@ const DcmDisplay = (props: DcmImageProps) => { // All images are already loaded setImageStack(cacheStack); if (activeViewportRef.current) { - const currentIndex = - activeViewportRef.current.getCurrentImageIdIndex(); const imageIDs = Object.values(cacheStack).flat() as string[]; - await activeViewportRef.current.setStack(imageIDs, currentIndex); + await activeViewportRef.current.setStack(imageIDs, selectedIndex); activeViewportRef.current.render(); } return; @@ -274,16 +308,15 @@ const DcmDisplay = (props: DcmImageProps) => { cacheRef.current[CACHE_KEY] = updatedImageStack; if (activeViewportRef.current) { - const currentIndex = activeViewportRef.current.getCurrentImageIdIndex(); const imageIDs = Object.values(updatedImageStack).flat() as string[]; - await activeViewportRef.current.setStack(imageIDs, currentIndex); + await activeViewportRef.current.setStack(imageIDs, selectedIndex); activeViewportRef.current.render(); } setLastLoadedIndex(lastLoadedIndex + Object.keys(newImages).length); setIsLoadingMore(false); }, - [cacheStack, lastLoadedIndex], + [cacheStack, lastLoadedIndex, selectedIndex, loadDicomImage], ); // Check if the first frame is still loading @@ -296,7 +329,7 @@ const DcmDisplay = (props: DcmImageProps) => { useEffect(() => { if ( !loadingFirstFrame && - !Array.isArray(data[selectedFile.data.fname]) && + !Array.isArray(data?.[selectedFile.data.fname]) && filteredList.length > lastLoadedIndex && Object.keys(cacheStack).length !== filteredList.length && !multiFrameDisplay @@ -325,15 +358,18 @@ const DcmDisplay = (props: DcmImageProps) => { */ const handleImageRendered = useCallback(() => { if (activeViewportRef.current) { - const newIndex = activeViewportRef.current.getCurrentImageIdIndex(); - setCurrentImageIndex(newIndex); + if ( + multiFrameDisplay || + (!multiFrameDisplay && Object.keys(imageStack).length > 1) + ) { + const newIndex = activeViewportRef.current.getCurrentImageIdIndex(); + setCurrentImageIndex(newIndex); + } if ( filteredList && - newIndex >= filteredList.length - 15 && fetchMore && !filesLoading && - !isLoadingMore && !loadingFirstFrame && !multiFrameDisplay ) { @@ -341,12 +377,12 @@ const DcmDisplay = (props: DcmImageProps) => { } } }, [ + multiFrameDisplay, + imageStack, filteredList, fetchMore, filesLoading, - isLoadingMore, loadingFirstFrame, - multiFrameDisplay, handlePagination, ]); @@ -374,7 +410,7 @@ const DcmDisplay = (props: DcmImageProps) => { const imageCount = useMemo(() => { return multiFrameDisplay ? (imageStack[fname] as string[]).length - : Object.values(imageStack).flat().length; + : Object.keys(imageStack).length; }, [multiFrameDisplay, imageStack, fname]); const totalDigits = imageCount.toString().length; @@ -395,14 +431,13 @@ const DcmDisplay = (props: DcmImageProps) => { ) return; - const defaultPlaybackSpeed = 24; // Use default playback speed (fps) - const frameDuration = 1000 / defaultPlaybackSpeed; // Calculate frame duration in milliseconds + const defaultPlaybackSpeed = 24; // Default playback speed (fps) + const frameDuration = 1000 / defaultPlaybackSpeed; // Frame duration in milliseconds cineIntervalIdRef.current = setInterval(() => { if (activeViewportRef.current) { let currentIndex = activeViewportRef.current.getCurrentImageIdIndex(); - const totalImages = imageCount; - currentIndex = (currentIndex + 1) % totalImages; + currentIndex = (currentIndex + 1) % imageCount; activeViewportRef.current.setImageIdIndex(currentIndex); setCurrentImageIndex(currentIndex); } @@ -446,7 +481,7 @@ const DcmDisplay = (props: DcmImageProps) => { top: "0.25em", right: "0.25em", zIndex: 99999, - width: "200px", // Set a fixed width + width: "200px", }} > {/* Current Index Display */} @@ -455,7 +490,7 @@ const DcmDisplay = (props: DcmImageProps) => { style={{ color: "#fff", marginBottom: "0.5em", - fontFamily: "monospace", // Use monospaced font + fontFamily: "monospace", }} > {`Current Index: ${currentIndexDisplay}/${imageCountDisplay}`} diff --git a/src/components/Preview/displays/dicomUtils/dataDictionary.ts b/src/components/Preview/displays/dicomUtils/dataDictionary.ts deleted file mode 100644 index 86a3b3520..000000000 --- a/src/components/Preview/displays/dicomUtils/dataDictionary.ts +++ /dev/null @@ -1,28575 +0,0 @@ -export const TAG_DICT = { - "(0000,0000)": { - tag: "(0000,0000)", - vr: "UL", - vm: "1", - name: "CommandGroupLength", - }, - "(0000,0001)": { - tag: "(0000,0001)", - vr: "UL", - vm: "1", - name: "CommandLengthToEnd", - }, - "(0000,0002)": { - tag: "(0000,0002)", - vr: "UI", - vm: "1", - name: "AffectedSOPClassUID", - }, - "(0000,0003)": { - tag: "(0000,0003)", - vr: "UI", - vm: "1", - name: "RequestedSOPClassUID", - }, - "(0000,0010)": { - tag: "(0000,0010)", - vr: "SH", - vm: "1", - name: "CommandRecognitionCode", - }, - "(0000,0100)": { - tag: "(0000,0100)", - vr: "US", - vm: "1", - name: "CommandField", - }, - "(0000,0110)": { tag: "(0000,0110)", vr: "US", vm: "1", name: "MessageID" }, - "(0000,0120)": { - tag: "(0000,0120)", - vr: "US", - vm: "1", - name: "MessageIDBeingRespondedTo", - }, - "(0000,0200)": { tag: "(0000,0200)", vr: "AE", vm: "1", name: "Initiator" }, - "(0000,0300)": { tag: "(0000,0300)", vr: "AE", vm: "1", name: "Receiver" }, - "(0000,0400)": { - tag: "(0000,0400)", - vr: "AE", - vm: "1", - name: "FindLocation", - }, - "(0000,0600)": { - tag: "(0000,0600)", - vr: "AE", - vm: "1", - name: "MoveDestination", - }, - "(0000,0700)": { tag: "(0000,0700)", vr: "US", vm: "1", name: "Priority" }, - "(0000,0800)": { - tag: "(0000,0800)", - vr: "US", - vm: "1", - name: "CommandDataSetType", - }, - "(0000,0850)": { - tag: "(0000,0850)", - vr: "US", - vm: "1", - name: "NumberOfMatches", - }, - "(0000,0860)": { - tag: "(0000,0860)", - vr: "US", - vm: "1", - name: "ResponseSequenceNumber", - }, - "(0000,0900)": { tag: "(0000,0900)", vr: "US", vm: "1", name: "Status" }, - "(0000,0901)": { - tag: "(0000,0901)", - vr: "AT", - vm: "1-n", - name: "OffendingElement", - }, - "(0000,0902)": { - tag: "(0000,0902)", - vr: "LO", - vm: "1", - name: "ErrorComment", - }, - "(0000,0903)": { tag: "(0000,0903)", vr: "US", vm: "1", name: "ErrorID" }, - "(0000,1000)": { - tag: "(0000,1000)", - vr: "UI", - vm: "1", - name: "AffectedSOPInstanceUID", - }, - "(0000,1001)": { - tag: "(0000,1001)", - vr: "UI", - vm: "1", - name: "RequestedSOPInstanceUID", - }, - "(0000,1002)": { tag: "(0000,1002)", vr: "US", vm: "1", name: "EventTypeID" }, - "(0000,1005)": { - tag: "(0000,1005)", - vr: "AT", - vm: "1-n", - name: "AttributeIdentifierList", - }, - "(0000,1008)": { - tag: "(0000,1008)", - vr: "US", - vm: "1", - name: "ActionTypeID", - }, - "(0000,1020)": { - tag: "(0000,1020)", - vr: "US", - vm: "1", - name: "NumberOfRemainingSuboperations", - }, - "(0000,1021)": { - tag: "(0000,1021)", - vr: "US", - vm: "1", - name: "NumberOfCompletedSuboperations", - }, - "(0000,1022)": { - tag: "(0000,1022)", - vr: "US", - vm: "1", - name: "NumberOfFailedSuboperations", - }, - "(0000,1023)": { - tag: "(0000,1023)", - vr: "US", - vm: "1", - name: "NumberOfWarningSuboperations", - }, - "(0000,1030)": { - tag: "(0000,1030)", - vr: "AE", - vm: "1", - name: "MoveOriginatorApplicationEntityTitle", - }, - "(0000,1031)": { - tag: "(0000,1031)", - vr: "US", - vm: "1", - name: "MoveOriginatorMessageID", - }, - "(0000,4000)": { - tag: "(0000,4000)", - vr: "LT", - vm: "1", - name: "DialogReceiver", - }, - "(0000,4010)": { - tag: "(0000,4010)", - vr: "LT", - vm: "1", - name: "TerminalType", - }, - "(0000,5010)": { - tag: "(0000,5010)", - vr: "SH", - vm: "1", - name: "MessageSetID", - }, - "(0000,5020)": { - tag: "(0000,5020)", - vr: "SH", - vm: "1", - name: "EndMessageID", - }, - "(0000,5110)": { - tag: "(0000,5110)", - vr: "LT", - vm: "1", - name: "DisplayFormat", - }, - "(0000,5120)": { - tag: "(0000,5120)", - vr: "LT", - vm: "1", - name: "PagePositionID", - }, - "(0000,5130)": { - tag: "(0000,5130)", - vr: "CS", - vm: "1", - name: "TextFormatID", - }, - "(0000,5140)": { - tag: "(0000,5140)", - vr: "CS", - vm: "1", - name: "NormalReverse", - }, - "(0000,5150)": { - tag: "(0000,5150)", - vr: "CS", - vm: "1", - name: "AddGrayScale", - }, - "(0000,5160)": { tag: "(0000,5160)", vr: "CS", vm: "1", name: "Borders" }, - "(0000,5170)": { tag: "(0000,5170)", vr: "IS", vm: "1", name: "Copies" }, - "(0000,5180)": { - tag: "(0000,5180)", - vr: "CS", - vm: "1", - name: "CommandMagnificationType", - }, - "(0000,5190)": { tag: "(0000,5190)", vr: "CS", vm: "1", name: "Erase" }, - "(0000,51A0)": { tag: "(0000,51A0)", vr: "CS", vm: "1", name: "Print" }, - "(0000,51B0)": { tag: "(0000,51B0)", vr: "US", vm: "1-n", name: "Overlays" }, - "(0002,0000)": { - tag: "(0002,0000)", - vr: "UL", - vm: "1", - name: "FileMetaInformationGroupLength", - }, - "(0002,0001)": { - tag: "(0002,0001)", - vr: "OB", - vm: "1", - name: "FileMetaInformationVersion", - }, - "(0002,0002)": { - tag: "(0002,0002)", - vr: "UI", - vm: "1", - name: "MediaStorageSOPClassUID", - }, - "(0002,0003)": { - tag: "(0002,0003)", - vr: "UI", - vm: "1", - name: "MediaStorageSOPInstanceUID", - }, - "(0002,0010)": { - tag: "(0002,0010)", - vr: "UI", - vm: "1", - name: "TransferSyntaxUID", - }, - "(0002,0012)": { - tag: "(0002,0012)", - vr: "UI", - vm: "1", - name: "ImplementationClassUID", - }, - "(0002,0013)": { - tag: "(0002,0013)", - vr: "SH", - vm: "1", - name: "ImplementationVersionName", - }, - "(0002,0016)": { - tag: "(0002,0016)", - vr: "AE", - vm: "1", - name: "SourceApplicationEntityTitle", - }, - "(0002,0017)": { - tag: "(0002,0017)", - vr: "AE", - vm: "1", - name: "SendingApplicationEntityTitle", - }, - "(0002,0018)": { - tag: "(0002,0018)", - vr: "AE", - vm: "1", - name: "ReceivingApplicationEntityTitle", - }, - "(0002,0026)": { - tag: "(0002,0026)", - vr: "UR", - vm: "1", - name: "SourcePresentationAddress", - }, - "(0002,0027)": { - tag: "(0002,0027)", - vr: "UR", - vm: "1", - name: "SendingPresentationAddress", - }, - "(0002,0028)": { - tag: "(0002,0028)", - vr: "UR", - vm: "1", - name: "ReceivingPresentationAddress", - }, - "(0002,0031)": { - tag: "(0002,0031)", - vr: "OB", - vm: "1", - name: "RTVMetaInformationVersion", - }, - "(0002,0032)": { - tag: "(0002,0032)", - vr: "UI", - vm: "1", - name: "RTVCommunicationSOPClassUID", - }, - "(0002,0033)": { - tag: "(0002,0033)", - vr: "UI", - vm: "1", - name: "RTVCommunicationSOPInstanceUID", - }, - "(0002,0035)": { - tag: "(0002,0035)", - vr: "OB", - vm: "1", - name: "RTVSourceIdentifier", - }, - "(0002,0036)": { - tag: "(0002,0036)", - vr: "OB", - vm: "1", - name: "RTVFlowIdentifier", - }, - "(0002,0037)": { - tag: "(0002,0037)", - vr: "UL", - vm: "1", - name: "RTVFlowRTPSamplingRate", - }, - "(0002,0038)": { - tag: "(0002,0038)", - vr: "FD", - vm: "1", - name: "RTVFlowActualFrameDuration", - }, - "(0002,0100)": { - tag: "(0002,0100)", - vr: "UI", - vm: "1", - name: "PrivateInformationCreatorUID", - }, - "(0002,0102)": { - tag: "(0002,0102)", - vr: "OB", - vm: "1", - name: "PrivateInformation", - }, - "(0004,1130)": { tag: "(0004,1130)", vr: "CS", vm: "1", name: "FileSetID" }, - "(0004,1141)": { - tag: "(0004,1141)", - vr: "CS", - vm: "1-8", - name: "FileSetDescriptorFileID", - }, - "(0004,1142)": { - tag: "(0004,1142)", - vr: "CS", - vm: "1", - name: "SpecificCharacterSetOfFileSetDescriptorFile", - }, - "(0004,1200)": { - tag: "(0004,1200)", - vr: "UL", - vm: "1", - name: "OffsetOfTheFirstDirectoryRecordOfTheRootDirectoryEntity", - }, - "(0004,1202)": { - tag: "(0004,1202)", - vr: "UL", - vm: "1", - name: "OffsetOfTheLastDirectoryRecordOfTheRootDirectoryEntity", - }, - "(0004,1212)": { - tag: "(0004,1212)", - vr: "US", - vm: "1", - name: "FileSetConsistencyFlag", - }, - "(0004,1220)": { - tag: "(0004,1220)", - vr: "SQ", - vm: "1", - name: "DirectoryRecordSequence", - }, - "(0004,1400)": { - tag: "(0004,1400)", - vr: "UL", - vm: "1", - name: "OffsetOfTheNextDirectoryRecord", - }, - "(0004,1410)": { - tag: "(0004,1410)", - vr: "US", - vm: "1", - name: "RecordInUseFlag", - }, - "(0004,1420)": { - tag: "(0004,1420)", - vr: "UL", - vm: "1", - name: "OffsetOfReferencedLowerLevelDirectoryEntity", - }, - "(0004,1430)": { - tag: "(0004,1430)", - vr: "CS", - vm: "1", - name: "DirectoryRecordType", - }, - "(0004,1432)": { - tag: "(0004,1432)", - vr: "UI", - vm: "1", - name: "PrivateRecordUID", - }, - "(0004,1500)": { - tag: "(0004,1500)", - vr: "CS", - vm: "1-8", - name: "ReferencedFileID", - }, - "(0004,1504)": { - tag: "(0004,1504)", - vr: "UL", - vm: "1", - name: "MRDRDirectoryRecordOffset", - }, - "(0004,1510)": { - tag: "(0004,1510)", - vr: "UI", - vm: "1", - name: "ReferencedSOPClassUIDInFile", - }, - "(0004,1511)": { - tag: "(0004,1511)", - vr: "UI", - vm: "1", - name: "ReferencedSOPInstanceUIDInFile", - }, - "(0004,1512)": { - tag: "(0004,1512)", - vr: "UI", - vm: "1", - name: "ReferencedTransferSyntaxUIDInFile", - }, - "(0004,151A)": { - tag: "(0004,151A)", - vr: "UI", - vm: "1-n", - name: "ReferencedRelatedGeneralSOPClassUIDInFile", - }, - "(0004,1600)": { - tag: "(0004,1600)", - vr: "UL", - vm: "1", - name: "NumberOfReferences", - }, - "(0006,0001)": { - tag: "(0006,0001)", - vr: "SQ", - vm: "1", - name: "CurrentFrameFunctionalGroupsSequence", - }, - "(0008,0001)": { tag: "(0008,0001)", vr: "UL", vm: "1", name: "LengthToEnd" }, - "(0008,0005)": { - tag: "(0008,0005)", - vr: "CS", - vm: "1-n", - name: "SpecificCharacterSet", - }, - "(0008,0006)": { - tag: "(0008,0006)", - vr: "SQ", - vm: "1", - name: "LanguageCodeSequence", - }, - "(0008,0008)": { tag: "(0008,0008)", vr: "CS", vm: "2-n", name: "ImageType" }, - "(0008,0010)": { - tag: "(0008,0010)", - vr: "SH", - vm: "1", - name: "RecognitionCode", - }, - "(0008,0012)": { - tag: "(0008,0012)", - vr: "DA", - vm: "1", - name: "InstanceCreationDate", - }, - "(0008,0013)": { - tag: "(0008,0013)", - vr: "TM", - vm: "1", - name: "InstanceCreationTime", - }, - "(0008,0014)": { - tag: "(0008,0014)", - vr: "UI", - vm: "1", - name: "InstanceCreatorUID", - }, - "(0008,0015)": { - tag: "(0008,0015)", - vr: "DT", - vm: "1", - name: "InstanceCoercionDateTime", - }, - "(0008,0016)": { tag: "(0008,0016)", vr: "UI", vm: "1", name: "SOPClassUID" }, - "(0008,0018)": { - tag: "(0008,0018)", - vr: "UI", - vm: "1", - name: "SOPInstanceUID", - }, - "(0008,001A)": { - tag: "(0008,001A)", - vr: "UI", - vm: "1-n", - name: "RelatedGeneralSOPClassUID", - }, - "(0008,001B)": { - tag: "(0008,001B)", - vr: "UI", - vm: "1", - name: "OriginalSpecializedSOPClassUID", - }, - "(0008,0020)": { tag: "(0008,0020)", vr: "DA", vm: "1", name: "StudyDate" }, - "(0008,0021)": { tag: "(0008,0021)", vr: "DA", vm: "1", name: "SeriesDate" }, - "(0008,0022)": { - tag: "(0008,0022)", - vr: "DA", - vm: "1", - name: "AcquisitionDate", - }, - "(0008,0023)": { tag: "(0008,0023)", vr: "DA", vm: "1", name: "ContentDate" }, - "(0008,0024)": { tag: "(0008,0024)", vr: "DA", vm: "1", name: "OverlayDate" }, - "(0008,0025)": { tag: "(0008,0025)", vr: "DA", vm: "1", name: "CurveDate" }, - "(0008,002A)": { - tag: "(0008,002A)", - vr: "DT", - vm: "1", - name: "AcquisitionDateTime", - }, - "(0008,0030)": { tag: "(0008,0030)", vr: "TM", vm: "1", name: "StudyTime" }, - "(0008,0031)": { tag: "(0008,0031)", vr: "TM", vm: "1", name: "SeriesTime" }, - "(0008,0032)": { - tag: "(0008,0032)", - vr: "TM", - vm: "1", - name: "AcquisitionTime", - }, - "(0008,0033)": { tag: "(0008,0033)", vr: "TM", vm: "1", name: "ContentTime" }, - "(0008,0034)": { tag: "(0008,0034)", vr: "TM", vm: "1", name: "OverlayTime" }, - "(0008,0035)": { tag: "(0008,0035)", vr: "TM", vm: "1", name: "CurveTime" }, - "(0008,0040)": { tag: "(0008,0040)", vr: "US", vm: "1", name: "DataSetType" }, - "(0008,0041)": { - tag: "(0008,0041)", - vr: "LO", - vm: "1", - name: "DataSetSubtype", - }, - "(0008,0042)": { - tag: "(0008,0042)", - vr: "CS", - vm: "1", - name: "NuclearMedicineSeriesType", - }, - "(0008,0050)": { - tag: "(0008,0050)", - vr: "SH", - vm: "1", - name: "AccessionNumber", - }, - "(0008,0051)": { - tag: "(0008,0051)", - vr: "SQ", - vm: "1", - name: "IssuerOfAccessionNumberSequence", - }, - "(0008,0052)": { - tag: "(0008,0052)", - vr: "CS", - vm: "1", - name: "QueryRetrieveLevel", - }, - "(0008,0053)": { - tag: "(0008,0053)", - vr: "CS", - vm: "1", - name: "QueryRetrieveView", - }, - "(0008,0054)": { - tag: "(0008,0054)", - vr: "AE", - vm: "1-n", - name: "RetrieveAETitle", - }, - "(0008,0055)": { - tag: "(0008,0055)", - vr: "AE", - vm: "1", - name: "StationAETitle", - }, - "(0008,0056)": { - tag: "(0008,0056)", - vr: "CS", - vm: "1", - name: "InstanceAvailability", - }, - "(0008,0058)": { - tag: "(0008,0058)", - vr: "UI", - vm: "1-n", - name: "FailedSOPInstanceUIDList", - }, - "(0008,0060)": { tag: "(0008,0060)", vr: "CS", vm: "1", name: "Modality" }, - "(0008,0061)": { - tag: "(0008,0061)", - vr: "CS", - vm: "1-n", - name: "ModalitiesInStudy", - }, - "(0008,0062)": { - tag: "(0008,0062)", - vr: "UI", - vm: "1-n", - name: "SOPClassesInStudy", - }, - "(0008,0063)": { - tag: "(0008,0063)", - vr: "SQ", - vm: "1", - name: "AnatomicRegionsInStudyCodeSequence", - }, - "(0008,0064)": { - tag: "(0008,0064)", - vr: "CS", - vm: "1", - name: "ConversionType", - }, - "(0008,0068)": { - tag: "(0008,0068)", - vr: "CS", - vm: "1", - name: "PresentationIntentType", - }, - "(0008,0070)": { - tag: "(0008,0070)", - vr: "LO", - vm: "1", - name: "Manufacturer", - }, - "(0008,0080)": { - tag: "(0008,0080)", - vr: "LO", - vm: "1", - name: "InstitutionName", - }, - "(0008,0081)": { - tag: "(0008,0081)", - vr: "ST", - vm: "1", - name: "InstitutionAddress", - }, - "(0008,0082)": { - tag: "(0008,0082)", - vr: "SQ", - vm: "1", - name: "InstitutionCodeSequence", - }, - "(0008,0090)": { - tag: "(0008,0090)", - vr: "PN", - vm: "1", - name: "ReferringPhysicianName", - }, - "(0008,0092)": { - tag: "(0008,0092)", - vr: "ST", - vm: "1", - name: "ReferringPhysicianAddress", - }, - "(0008,0094)": { - tag: "(0008,0094)", - vr: "SH", - vm: "1-n", - name: "ReferringPhysicianTelephoneNumbers", - }, - "(0008,0096)": { - tag: "(0008,0096)", - vr: "SQ", - vm: "1", - name: "ReferringPhysicianIdentificationSequence", - }, - "(0008,009C)": { - tag: "(0008,009C)", - vr: "PN", - vm: "1-n", - name: "ConsultingPhysicianName", - }, - "(0008,009D)": { - tag: "(0008,009D)", - vr: "SQ", - vm: "1", - name: "ConsultingPhysicianIdentificationSequence", - }, - "(0008,0100)": { tag: "(0008,0100)", vr: "SH", vm: "1", name: "CodeValue" }, - "(0008,0101)": { - tag: "(0008,0101)", - vr: "LO", - vm: "1", - name: "ExtendedCodeValue", - }, - "(0008,0102)": { - tag: "(0008,0102)", - vr: "SH", - vm: "1", - name: "CodingSchemeDesignator", - }, - "(0008,0103)": { - tag: "(0008,0103)", - vr: "SH", - vm: "1", - name: "CodingSchemeVersion", - }, - "(0008,0104)": { tag: "(0008,0104)", vr: "LO", vm: "1", name: "CodeMeaning" }, - "(0008,0105)": { - tag: "(0008,0105)", - vr: "CS", - vm: "1", - name: "MappingResource", - }, - "(0008,0106)": { - tag: "(0008,0106)", - vr: "DT", - vm: "1", - name: "ContextGroupVersion", - }, - "(0008,0107)": { - tag: "(0008,0107)", - vr: "DT", - vm: "1", - name: "ContextGroupLocalVersion", - }, - "(0008,0108)": { - tag: "(0008,0108)", - vr: "LT", - vm: "1", - name: "ExtendedCodeMeaning", - }, - "(0008,0109)": { - tag: "(0008,0109)", - vr: "SQ", - vm: "1", - name: "CodingSchemeResourcesSequence", - }, - "(0008,010A)": { - tag: "(0008,010A)", - vr: "CS", - vm: "1", - name: "CodingSchemeURLType", - }, - "(0008,010B)": { - tag: "(0008,010B)", - vr: "CS", - vm: "1", - name: "ContextGroupExtensionFlag", - }, - "(0008,010C)": { - tag: "(0008,010C)", - vr: "UI", - vm: "1", - name: "CodingSchemeUID", - }, - "(0008,010D)": { - tag: "(0008,010D)", - vr: "UI", - vm: "1", - name: "ContextGroupExtensionCreatorUID", - }, - "(0008,010E)": { - tag: "(0008,010E)", - vr: "UR", - vm: "1", - name: "CodingSchemeURL", - }, - "(0008,010F)": { - tag: "(0008,010F)", - vr: "CS", - vm: "1", - name: "ContextIdentifier", - }, - "(0008,0110)": { - tag: "(0008,0110)", - vr: "SQ", - vm: "1", - name: "CodingSchemeIdentificationSequence", - }, - "(0008,0112)": { - tag: "(0008,0112)", - vr: "LO", - vm: "1", - name: "CodingSchemeRegistry", - }, - "(0008,0114)": { - tag: "(0008,0114)", - vr: "ST", - vm: "1", - name: "CodingSchemeExternalID", - }, - "(0008,0115)": { - tag: "(0008,0115)", - vr: "ST", - vm: "1", - name: "CodingSchemeName", - }, - "(0008,0116)": { - tag: "(0008,0116)", - vr: "ST", - vm: "1", - name: "CodingSchemeResponsibleOrganization", - }, - "(0008,0117)": { tag: "(0008,0117)", vr: "UI", vm: "1", name: "ContextUID" }, - "(0008,0118)": { - tag: "(0008,0118)", - vr: "UI", - vm: "1", - name: "MappingResourceUID", - }, - "(0008,0119)": { - tag: "(0008,0119)", - vr: "UC", - vm: "1", - name: "LongCodeValue", - }, - "(0008,0120)": { - tag: "(0008,0120)", - vr: "UR", - vm: "1", - name: "URNCodeValue", - }, - "(0008,0121)": { - tag: "(0008,0121)", - vr: "SQ", - vm: "1", - name: "EquivalentCodeSequence", - }, - "(0008,0122)": { - tag: "(0008,0122)", - vr: "LO", - vm: "1", - name: "MappingResourceName", - }, - "(0008,0123)": { - tag: "(0008,0123)", - vr: "SQ", - vm: "1", - name: "ContextGroupIdentificationSequence", - }, - "(0008,0124)": { - tag: "(0008,0124)", - vr: "SQ", - vm: "1", - name: "MappingResourceIdentificationSequence", - }, - "(0008,0201)": { - tag: "(0008,0201)", - vr: "SH", - vm: "1", - name: "TimezoneOffsetFromUTC", - }, - "(0008,0202)": { tag: "(0008,0202)", vr: "", vm: "", name: "" }, - "(0008,0220)": { - tag: "(0008,0220)", - vr: "SQ", - vm: "1", - name: "ResponsibleGroupCodeSequence", - }, - "(0008,0221)": { - tag: "(0008,0221)", - vr: "CS", - vm: "1", - name: "EquipmentModality", - }, - "(0008,0222)": { - tag: "(0008,0222)", - vr: "LO", - vm: "1", - name: "ManufacturerRelatedModelGroup", - }, - "(0008,0300)": { - tag: "(0008,0300)", - vr: "SQ", - vm: "1", - name: "PrivateDataElementCharacteristicsSequence", - }, - "(0008,0301)": { - tag: "(0008,0301)", - vr: "US", - vm: "1", - name: "PrivateGroupReference", - }, - "(0008,0302)": { - tag: "(0008,0302)", - vr: "LO", - vm: "1", - name: "PrivateCreatorReference", - }, - "(0008,0303)": { - tag: "(0008,0303)", - vr: "CS", - vm: "1", - name: "BlockIdentifyingInformationStatus", - }, - "(0008,0304)": { - tag: "(0008,0304)", - vr: "US", - vm: "1-n", - name: "NonidentifyingPrivateElements", - }, - "(0008,0305)": { - tag: "(0008,0305)", - vr: "SQ", - vm: "1", - name: "DeidentificationActionSequence", - }, - "(0008,0306)": { - tag: "(0008,0306)", - vr: "US", - vm: "1-n", - name: "IdentifyingPrivateElements", - }, - "(0008,0307)": { - tag: "(0008,0307)", - vr: "CS", - vm: "1", - name: "DeidentificationAction", - }, - "(0008,0308)": { - tag: "(0008,0308)", - vr: "US", - vm: "1", - name: "PrivateDataElement", - }, - "(0008,0309)": { - tag: "(0008,0309)", - vr: "UL", - vm: "1-3", - name: "PrivateDataElementValueMultiplicity", - }, - "(0008,030A)": { - tag: "(0008,030A)", - vr: "CS", - vm: "1", - name: "PrivateDataElementValueRepresentation", - }, - "(0008,030B)": { - tag: "(0008,030B)", - vr: "UL", - vm: "1-2", - name: "PrivateDataElementNumberOfItems", - }, - "(0008,030C)": { - tag: "(0008,030C)", - vr: "UC", - vm: "1", - name: "PrivateDataElementName", - }, - "(0008,030D)": { - tag: "(0008,030D)", - vr: "UC", - vm: "1", - name: "PrivateDataElementKeyword", - }, - "(0008,030E)": { - tag: "(0008,030E)", - vr: "UT", - vm: "1", - name: "PrivateDataElementDescription", - }, - "(0008,030F)": { - tag: "(0008,030F)", - vr: "UT", - vm: "1", - name: "PrivateDataElementEncoding", - }, - "(0008,0310)": { - tag: "(0008,0310)", - vr: "SQ", - vm: "1", - name: "PrivateDataElementDefinitionSequence", - }, - "(0008,1000)": { tag: "(0008,1000)", vr: "AE", vm: "1", name: "NetworkID" }, - "(0008,1010)": { tag: "(0008,1010)", vr: "SH", vm: "1", name: "StationName" }, - "(0008,1030)": { - tag: "(0008,1030)", - vr: "LO", - vm: "1", - name: "StudyDescription", - }, - "(0008,1032)": { - tag: "(0008,1032)", - vr: "SQ", - vm: "1", - name: "ProcedureCodeSequence", - }, - "(0008,103E)": { - tag: "(0008,103E)", - vr: "LO", - vm: "1", - name: "SeriesDescription", - }, - "(0008,103F)": { - tag: "(0008,103F)", - vr: "SQ", - vm: "1", - name: "SeriesDescriptionCodeSequence", - }, - "(0008,1040)": { - tag: "(0008,1040)", - vr: "LO", - vm: "1", - name: "InstitutionalDepartmentName", - }, - "(0008,1041)": { - tag: "(0008,1041)", - vr: "SQ", - vm: "1", - name: "InstitutionalDepartmentTypeCodeSequence", - }, - "(0008,1048)": { - tag: "(0008,1048)", - vr: "PN", - vm: "1-n", - name: "PhysiciansOfRecord", - }, - "(0008,1049)": { - tag: "(0008,1049)", - vr: "SQ", - vm: "1", - name: "PhysiciansOfRecordIdentificationSequence", - }, - "(0008,1050)": { - tag: "(0008,1050)", - vr: "PN", - vm: "1-n", - name: "PerformingPhysicianName", - }, - "(0008,1052)": { - tag: "(0008,1052)", - vr: "SQ", - vm: "1", - name: "PerformingPhysicianIdentificationSequence", - }, - "(0008,1060)": { - tag: "(0008,1060)", - vr: "PN", - vm: "1-n", - name: "NameOfPhysiciansReadingStudy", - }, - "(0008,1062)": { - tag: "(0008,1062)", - vr: "SQ", - vm: "1", - name: "PhysiciansReadingStudyIdentificationSequence", - }, - "(0008,1070)": { - tag: "(0008,1070)", - vr: "PN", - vm: "1-n", - name: "OperatorsName", - }, - "(0008,1072)": { - tag: "(0008,1072)", - vr: "SQ", - vm: "1", - name: "OperatorIdentificationSequence", - }, - "(0008,1080)": { - tag: "(0008,1080)", - vr: "LO", - vm: "1-n", - name: "AdmittingDiagnosesDescription", - }, - "(0008,1084)": { - tag: "(0008,1084)", - vr: "SQ", - vm: "1", - name: "AdmittingDiagnosesCodeSequence", - }, - "(0008,1090)": { - tag: "(0008,1090)", - vr: "LO", - vm: "1", - name: "ManufacturerModelName", - }, - "(0008,1100)": { - tag: "(0008,1100)", - vr: "SQ", - vm: "1", - name: "ReferencedResultsSequence", - }, - "(0008,1110)": { - tag: "(0008,1110)", - vr: "SQ", - vm: "1", - name: "ReferencedStudySequence", - }, - "(0008,1111)": { - tag: "(0008,1111)", - vr: "SQ", - vm: "1", - name: "ReferencedPerformedProcedureStepSequence", - }, - "(0008,1115)": { - tag: "(0008,1115)", - vr: "SQ", - vm: "1", - name: "ReferencedSeriesSequence", - }, - "(0008,1120)": { - tag: "(0008,1120)", - vr: "SQ", - vm: "1", - name: "ReferencedPatientSequence", - }, - "(0008,1125)": { - tag: "(0008,1125)", - vr: "SQ", - vm: "1", - name: "ReferencedVisitSequence", - }, - "(0008,1130)": { - tag: "(0008,1130)", - vr: "SQ", - vm: "1", - name: "ReferencedOverlaySequence", - }, - "(0008,1134)": { - tag: "(0008,1134)", - vr: "SQ", - vm: "1", - name: "ReferencedStereometricInstanceSequence", - }, - "(0008,113A)": { - tag: "(0008,113A)", - vr: "SQ", - vm: "1", - name: "ReferencedWaveformSequence", - }, - "(0008,1140)": { - tag: "(0008,1140)", - vr: "SQ", - vm: "1", - name: "ReferencedImageSequence", - }, - "(0008,1145)": { - tag: "(0008,1145)", - vr: "SQ", - vm: "1", - name: "ReferencedCurveSequence", - }, - "(0008,114A)": { - tag: "(0008,114A)", - vr: "SQ", - vm: "1", - name: "ReferencedInstanceSequence", - }, - "(0008,114B)": { - tag: "(0008,114B)", - vr: "SQ", - vm: "1", - name: "ReferencedRealWorldValueMappingInstanceSequence", - }, - "(0008,1150)": { - tag: "(0008,1150)", - vr: "UI", - vm: "1", - name: "ReferencedSOPClassUID", - }, - "(0008,1155)": { - tag: "(0008,1155)", - vr: "UI", - vm: "1", - name: "ReferencedSOPInstanceUID", - }, - "(0008,1156)": { - tag: "(0008,1156)", - vr: "SQ", - vm: "1", - name: "DefinitionSourceSequence", - }, - "(0008,115A)": { - tag: "(0008,115A)", - vr: "UI", - vm: "1-n", - name: "SOPClassesSupported", - }, - "(0008,1160)": { - tag: "(0008,1160)", - vr: "IS", - vm: "1-n", - name: "ReferencedFrameNumber", - }, - "(0008,1161)": { - tag: "(0008,1161)", - vr: "UL", - vm: "1-n", - name: "SimpleFrameList", - }, - "(0008,1162)": { - tag: "(0008,1162)", - vr: "UL", - vm: "3-3n", - name: "CalculatedFrameList", - }, - "(0008,1163)": { tag: "(0008,1163)", vr: "FD", vm: "2", name: "TimeRange" }, - "(0008,1164)": { - tag: "(0008,1164)", - vr: "SQ", - vm: "1", - name: "FrameExtractionSequence", - }, - "(0008,1167)": { - tag: "(0008,1167)", - vr: "UI", - vm: "1", - name: "MultiFrameSourceSOPInstanceUID", - }, - "(0008,1190)": { tag: "(0008,1190)", vr: "UR", vm: "1", name: "RetrieveURL" }, - "(0008,1195)": { - tag: "(0008,1195)", - vr: "UI", - vm: "1", - name: "TransactionUID", - }, - "(0008,1196)": { - tag: "(0008,1196)", - vr: "US", - vm: "1", - name: "WarningReason", - }, - "(0008,1197)": { - tag: "(0008,1197)", - vr: "US", - vm: "1", - name: "FailureReason", - }, - "(0008,1198)": { - tag: "(0008,1198)", - vr: "SQ", - vm: "1", - name: "FailedSOPSequence", - }, - "(0008,1199)": { - tag: "(0008,1199)", - vr: "SQ", - vm: "1", - name: "ReferencedSOPSequence", - }, - "(0008,119A)": { - tag: "(0008,119A)", - vr: "SQ", - vm: "1", - name: "OtherFailuresSequence", - }, - "(0008,1200)": { - tag: "(0008,1200)", - vr: "SQ", - vm: "1", - name: "StudiesContainingOtherReferencedInstancesSequence", - }, - "(0008,1250)": { - tag: "(0008,1250)", - vr: "SQ", - vm: "1", - name: "RelatedSeriesSequence", - }, - "(0008,2110)": { - tag: "(0008,2110)", - vr: "CS", - vm: "1", - name: "LossyImageCompressionRetired", - }, - "(0008,2111)": { - tag: "(0008,2111)", - vr: "ST", - vm: "1", - name: "DerivationDescription", - }, - "(0008,2112)": { - tag: "(0008,2112)", - vr: "SQ", - vm: "1", - name: "SourceImageSequence", - }, - "(0008,2120)": { tag: "(0008,2120)", vr: "SH", vm: "1", name: "StageName" }, - "(0008,2122)": { tag: "(0008,2122)", vr: "IS", vm: "1", name: "StageNumber" }, - "(0008,2124)": { - tag: "(0008,2124)", - vr: "IS", - vm: "1", - name: "NumberOfStages", - }, - "(0008,2127)": { tag: "(0008,2127)", vr: "SH", vm: "1", name: "ViewName" }, - "(0008,2128)": { tag: "(0008,2128)", vr: "IS", vm: "1", name: "ViewNumber" }, - "(0008,2129)": { - tag: "(0008,2129)", - vr: "IS", - vm: "1", - name: "NumberOfEventTimers", - }, - "(0008,212A)": { - tag: "(0008,212A)", - vr: "IS", - vm: "1", - name: "NumberOfViewsInStage", - }, - "(0008,2130)": { - tag: "(0008,2130)", - vr: "DS", - vm: "1-n", - name: "EventElapsedTimes", - }, - "(0008,2132)": { - tag: "(0008,2132)", - vr: "LO", - vm: "1-n", - name: "EventTimerNames", - }, - "(0008,2133)": { - tag: "(0008,2133)", - vr: "SQ", - vm: "1", - name: "EventTimerSequence", - }, - "(0008,2134)": { - tag: "(0008,2134)", - vr: "FD", - vm: "1", - name: "EventTimeOffset", - }, - "(0008,2135)": { - tag: "(0008,2135)", - vr: "SQ", - vm: "1", - name: "EventCodeSequence", - }, - "(0008,2142)": { tag: "(0008,2142)", vr: "IS", vm: "1", name: "StartTrim" }, - "(0008,2143)": { tag: "(0008,2143)", vr: "IS", vm: "1", name: "StopTrim" }, - "(0008,2144)": { - tag: "(0008,2144)", - vr: "IS", - vm: "1", - name: "RecommendedDisplayFrameRate", - }, - "(0008,2200)": { - tag: "(0008,2200)", - vr: "CS", - vm: "1", - name: "TransducerPosition", - }, - "(0008,2204)": { - tag: "(0008,2204)", - vr: "CS", - vm: "1", - name: "TransducerOrientation", - }, - "(0008,2208)": { - tag: "(0008,2208)", - vr: "CS", - vm: "1", - name: "AnatomicStructure", - }, - "(0008,2218)": { - tag: "(0008,2218)", - vr: "SQ", - vm: "1", - name: "AnatomicRegionSequence", - }, - "(0008,2220)": { - tag: "(0008,2220)", - vr: "SQ", - vm: "1", - name: "AnatomicRegionModifierSequence", - }, - "(0008,2228)": { - tag: "(0008,2228)", - vr: "SQ", - vm: "1", - name: "PrimaryAnatomicStructureSequence", - }, - "(0008,2229)": { - tag: "(0008,2229)", - vr: "SQ", - vm: "1", - name: "AnatomicStructureSpaceOrRegionSequence", - }, - "(0008,2230)": { - tag: "(0008,2230)", - vr: "SQ", - vm: "1", - name: "PrimaryAnatomicStructureModifierSequence", - }, - "(0008,2240)": { - tag: "(0008,2240)", - vr: "SQ", - vm: "1", - name: "TransducerPositionSequence", - }, - "(0008,2242)": { - tag: "(0008,2242)", - vr: "SQ", - vm: "1", - name: "TransducerPositionModifierSequence", - }, - "(0008,2244)": { - tag: "(0008,2244)", - vr: "SQ", - vm: "1", - name: "TransducerOrientationSequence", - }, - "(0008,2246)": { - tag: "(0008,2246)", - vr: "SQ", - vm: "1", - name: "TransducerOrientationModifierSequence", - }, - "(0008,2251)": { - tag: "(0008,2251)", - vr: "SQ", - vm: "1", - name: "AnatomicStructureSpaceOrRegionCodeSequenceTrial", - }, - "(0008,2253)": { - tag: "(0008,2253)", - vr: "SQ", - vm: "1", - name: "AnatomicPortalOfEntranceCodeSequenceTrial", - }, - "(0008,2255)": { - tag: "(0008,2255)", - vr: "SQ", - vm: "1", - name: "AnatomicApproachDirectionCodeSequenceTrial", - }, - "(0008,2256)": { - tag: "(0008,2256)", - vr: "ST", - vm: "1", - name: "AnatomicPerspectiveDescriptionTrial", - }, - "(0008,2257)": { - tag: "(0008,2257)", - vr: "SQ", - vm: "1", - name: "AnatomicPerspectiveCodeSequenceTrial", - }, - "(0008,2258)": { - tag: "(0008,2258)", - vr: "ST", - vm: "1", - name: "AnatomicLocationOfExaminingInstrumentDescriptionTrial", - }, - "(0008,2259)": { - tag: "(0008,2259)", - vr: "SQ", - vm: "1", - name: "AnatomicLocationOfExaminingInstrumentCodeSequenceTrial", - }, - "(0008,225A)": { - tag: "(0008,225A)", - vr: "SQ", - vm: "1", - name: "AnatomicStructureSpaceOrRegionModifierCodeSequenceTrial", - }, - "(0008,225C)": { - tag: "(0008,225C)", - vr: "SQ", - vm: "1", - name: "OnAxisBackgroundAnatomicStructureCodeSequenceTrial", - }, - "(0008,3001)": { - tag: "(0008,3001)", - vr: "SQ", - vm: "1", - name: "AlternateRepresentationSequence", - }, - "(0008,3002)": { - tag: "(0008,3002)", - vr: "UI", - vm: "1-n", - name: "AvailableTransferSyntaxUID", - }, - "(0008,3010)": { - tag: "(0008,3010)", - vr: "UI", - vm: "1-n", - name: "IrradiationEventUID", - }, - "(0008,3011)": { - tag: "(0008,3011)", - vr: "SQ", - vm: "1", - name: "SourceIrradiationEventSequence", - }, - "(0008,3012)": { - tag: "(0008,3012)", - vr: "UI", - vm: "1", - name: "RadiopharmaceuticalAdministrationEventUID", - }, - "(0008,4000)": { - tag: "(0008,4000)", - vr: "LT", - vm: "1", - name: "IdentifyingComments", - }, - "(0008,9007)": { tag: "(0008,9007)", vr: "CS", vm: "4", name: "FrameType" }, - "(0008,9092)": { - tag: "(0008,9092)", - vr: "SQ", - vm: "1", - name: "ReferencedImageEvidenceSequence", - }, - "(0008,9121)": { - tag: "(0008,9121)", - vr: "SQ", - vm: "1", - name: "ReferencedRawDataSequence", - }, - "(0008,9123)": { - tag: "(0008,9123)", - vr: "UI", - vm: "1", - name: "CreatorVersionUID", - }, - "(0008,9124)": { - tag: "(0008,9124)", - vr: "SQ", - vm: "1", - name: "DerivationImageSequence", - }, - "(0008,9154)": { - tag: "(0008,9154)", - vr: "SQ", - vm: "1", - name: "SourceImageEvidenceSequence", - }, - "(0008,9205)": { - tag: "(0008,9205)", - vr: "CS", - vm: "1", - name: "PixelPresentation", - }, - "(0008,9206)": { - tag: "(0008,9206)", - vr: "CS", - vm: "1", - name: "VolumetricProperties", - }, - "(0008,9207)": { - tag: "(0008,9207)", - vr: "CS", - vm: "1", - name: "VolumeBasedCalculationTechnique", - }, - "(0008,9208)": { - tag: "(0008,9208)", - vr: "CS", - vm: "1", - name: "ComplexImageComponent", - }, - "(0008,9209)": { - tag: "(0008,9209)", - vr: "CS", - vm: "1", - name: "AcquisitionContrast", - }, - "(0008,9215)": { - tag: "(0008,9215)", - vr: "SQ", - vm: "1", - name: "DerivationCodeSequence", - }, - "(0008,9237)": { - tag: "(0008,9237)", - vr: "SQ", - vm: "1", - name: "ReferencedPresentationStateSequence", - }, - "(0008,9410)": { - tag: "(0008,9410)", - vr: "SQ", - vm: "1", - name: "ReferencedOtherPlaneSequence", - }, - "(0008,9458)": { - tag: "(0008,9458)", - vr: "SQ", - vm: "1", - name: "FrameDisplaySequence", - }, - "(0008,9459)": { - tag: "(0008,9459)", - vr: "FL", - vm: "1", - name: "RecommendedDisplayFrameRateInFloat", - }, - "(0008,9460)": { - tag: "(0008,9460)", - vr: "CS", - vm: "1", - name: "SkipFrameRangeFlag", - }, - "(0010,0010)": { tag: "(0010,0010)", vr: "PN", vm: "1", name: "PatientName" }, - "(0010,0020)": { tag: "(0010,0020)", vr: "LO", vm: "1", name: "PatientID" }, - "(0010,0021)": { - tag: "(0010,0021)", - vr: "LO", - vm: "1", - name: "IssuerOfPatientID", - }, - "(0010,0022)": { - tag: "(0010,0022)", - vr: "CS", - vm: "1", - name: "TypeOfPatientID", - }, - "(0010,0024)": { - tag: "(0010,0024)", - vr: "SQ", - vm: "1", - name: "IssuerOfPatientIDQualifiersSequence", - }, - "(0010,0026)": { - tag: "(0010,0026)", - vr: "SQ", - vm: "1", - name: "SourcePatientGroupIdentificationSequence", - }, - "(0010,0027)": { - tag: "(0010,0027)", - vr: "SQ", - vm: "1", - name: "GroupOfPatientsIdentificationSequence", - }, - "(0010,0028)": { - tag: "(0010,0028)", - vr: "US", - vm: "3", - name: "SubjectRelativePositionInImage", - }, - "(0010,0030)": { - tag: "(0010,0030)", - vr: "DA", - vm: "1", - name: "PatientBirthDate", - }, - "(0010,0032)": { - tag: "(0010,0032)", - vr: "TM", - vm: "1", - name: "PatientBirthTime", - }, - "(0010,0033)": { - tag: "(0010,0033)", - vr: "LO", - vm: "1", - name: "PatientBirthDateInAlternativeCalendar", - }, - "(0010,0034)": { - tag: "(0010,0034)", - vr: "LO", - vm: "1", - name: "PatientDeathDateInAlternativeCalendar", - }, - "(0010,0035)": { - tag: "(0010,0035)", - vr: "CS", - vm: "1", - name: "PatientAlternativeCalendar", - }, - "(0010,0040)": { tag: "(0010,0040)", vr: "CS", vm: "1", name: "PatientSex" }, - "(0010,0050)": { - tag: "(0010,0050)", - vr: "SQ", - vm: "1", - name: "PatientInsurancePlanCodeSequence", - }, - "(0010,0101)": { - tag: "(0010,0101)", - vr: "SQ", - vm: "1", - name: "PatientPrimaryLanguageCodeSequence", - }, - "(0010,0102)": { - tag: "(0010,0102)", - vr: "SQ", - vm: "1", - name: "PatientPrimaryLanguageModifierCodeSequence", - }, - "(0010,0200)": { - tag: "(0010,0200)", - vr: "CS", - vm: "1", - name: "QualityControlSubject", - }, - "(0010,0201)": { - tag: "(0010,0201)", - vr: "SQ", - vm: "1", - name: "QualityControlSubjectTypeCodeSequence", - }, - "(0010,0212)": { - tag: "(0010,0212)", - vr: "UC", - vm: "1", - name: "StrainDescription", - }, - "(0010,0213)": { - tag: "(0010,0213)", - vr: "LO", - vm: "1", - name: "StrainNomenclature", - }, - "(0010,0214)": { - tag: "(0010,0214)", - vr: "LO", - vm: "1", - name: "StrainStockNumber", - }, - "(0010,0215)": { - tag: "(0010,0215)", - vr: "SQ", - vm: "1", - name: "StrainSourceRegistryCodeSequence", - }, - "(0010,0216)": { - tag: "(0010,0216)", - vr: "SQ", - vm: "1", - name: "StrainStockSequence", - }, - "(0010,0217)": { - tag: "(0010,0217)", - vr: "LO", - vm: "1", - name: "StrainSource", - }, - "(0010,0218)": { - tag: "(0010,0218)", - vr: "UT", - vm: "1", - name: "StrainAdditionalInformation", - }, - "(0010,0219)": { - tag: "(0010,0219)", - vr: "SQ", - vm: "1", - name: "StrainCodeSequence", - }, - "(0010,0221)": { - tag: "(0010,0221)", - vr: "SQ", - vm: "1", - name: "GeneticModificationsSequence", - }, - "(0010,0222)": { - tag: "(0010,0222)", - vr: "UC", - vm: "1", - name: "GeneticModificationsDescription", - }, - "(0010,0223)": { - tag: "(0010,0223)", - vr: "LO", - vm: "1", - name: "GeneticModificationsNomenclature", - }, - "(0010,0229)": { - tag: "(0010,0229)", - vr: "SQ", - vm: "1", - name: "GeneticModificationsCodeSequence", - }, - "(0010,1000)": { - tag: "(0010,1000)", - vr: "LO", - vm: "1-n", - name: "OtherPatientIDs", - }, - "(0010,1001)": { - tag: "(0010,1001)", - vr: "PN", - vm: "1-n", - name: "OtherPatientNames", - }, - "(0010,1002)": { - tag: "(0010,1002)", - vr: "SQ", - vm: "1", - name: "OtherPatientIDsSequence", - }, - "(0010,1005)": { - tag: "(0010,1005)", - vr: "PN", - vm: "1", - name: "PatientBirthName", - }, - "(0010,1010)": { tag: "(0010,1010)", vr: "AS", vm: "1", name: "PatientAge" }, - "(0010,1020)": { tag: "(0010,1020)", vr: "DS", vm: "1", name: "PatientSize" }, - "(0010,1021)": { - tag: "(0010,1021)", - vr: "SQ", - vm: "1", - name: "PatientSizeCodeSequence", - }, - "(0010,1022)": { - tag: "(0010,1022)", - vr: "DS", - vm: "1", - name: "PatientBodyMassIndex", - }, - "(0010,1023)": { - tag: "(0010,1023)", - vr: "DS", - vm: "1", - name: "MeasuredAPDimension", - }, - "(0010,1024)": { - tag: "(0010,1024)", - vr: "DS", - vm: "1", - name: "MeasuredLateralDimension", - }, - "(0010,1030)": { - tag: "(0010,1030)", - vr: "DS", - vm: "1", - name: "PatientWeight", - }, - "(0010,1040)": { - tag: "(0010,1040)", - vr: "LO", - vm: "1", - name: "PatientAddress", - }, - "(0010,1050)": { - tag: "(0010,1050)", - vr: "LO", - vm: "1-n", - name: "InsurancePlanIdentification", - }, - "(0010,1060)": { - tag: "(0010,1060)", - vr: "PN", - vm: "1", - name: "PatientMotherBirthName", - }, - "(0010,1080)": { - tag: "(0010,1080)", - vr: "LO", - vm: "1", - name: "MilitaryRank", - }, - "(0010,1081)": { - tag: "(0010,1081)", - vr: "LO", - vm: "1", - name: "BranchOfService", - }, - "(0010,1090)": { - tag: "(0010,1090)", - vr: "LO", - vm: "1", - name: "MedicalRecordLocator", - }, - "(0010,1100)": { - tag: "(0010,1100)", - vr: "SQ", - vm: "1", - name: "ReferencedPatientPhotoSequence", - }, - "(0010,2000)": { - tag: "(0010,2000)", - vr: "LO", - vm: "1-n", - name: "MedicalAlerts", - }, - "(0010,2110)": { tag: "(0010,2110)", vr: "LO", vm: "1-n", name: "Allergies" }, - "(0010,2150)": { - tag: "(0010,2150)", - vr: "LO", - vm: "1", - name: "CountryOfResidence", - }, - "(0010,2152)": { - tag: "(0010,2152)", - vr: "LO", - vm: "1", - name: "RegionOfResidence", - }, - "(0010,2154)": { - tag: "(0010,2154)", - vr: "SH", - vm: "1-n", - name: "PatientTelephoneNumbers", - }, - "(0010,2155)": { - tag: "(0010,2155)", - vr: "LT", - vm: "1", - name: "PatientTelecomInformation", - }, - "(0010,2160)": { tag: "(0010,2160)", vr: "SH", vm: "1", name: "EthnicGroup" }, - "(0010,2180)": { tag: "(0010,2180)", vr: "SH", vm: "1", name: "Occupation" }, - "(0010,21A0)": { - tag: "(0010,21A0)", - vr: "CS", - vm: "1", - name: "SmokingStatus", - }, - "(0010,21B0)": { - tag: "(0010,21B0)", - vr: "LT", - vm: "1", - name: "AdditionalPatientHistory", - }, - "(0010,21C0)": { - tag: "(0010,21C0)", - vr: "US", - vm: "1", - name: "PregnancyStatus", - }, - "(0010,21D0)": { - tag: "(0010,21D0)", - vr: "DA", - vm: "1", - name: "LastMenstrualDate", - }, - "(0010,21F0)": { - tag: "(0010,21F0)", - vr: "LO", - vm: "1", - name: "PatientReligiousPreference", - }, - "(0010,2201)": { - tag: "(0010,2201)", - vr: "LO", - vm: "1", - name: "PatientSpeciesDescription", - }, - "(0010,2202)": { - tag: "(0010,2202)", - vr: "SQ", - vm: "1", - name: "PatientSpeciesCodeSequence", - }, - "(0010,2203)": { - tag: "(0010,2203)", - vr: "CS", - vm: "1", - name: "PatientSexNeutered", - }, - "(0010,2210)": { - tag: "(0010,2210)", - vr: "CS", - vm: "1", - name: "AnatomicalOrientationType", - }, - "(0010,2292)": { - tag: "(0010,2292)", - vr: "LO", - vm: "1", - name: "PatientBreedDescription", - }, - "(0010,2293)": { - tag: "(0010,2293)", - vr: "SQ", - vm: "1", - name: "PatientBreedCodeSequence", - }, - "(0010,2294)": { - tag: "(0010,2294)", - vr: "SQ", - vm: "1", - name: "BreedRegistrationSequence", - }, - "(0010,2295)": { - tag: "(0010,2295)", - vr: "LO", - vm: "1", - name: "BreedRegistrationNumber", - }, - "(0010,2296)": { - tag: "(0010,2296)", - vr: "SQ", - vm: "1", - name: "BreedRegistryCodeSequence", - }, - "(0010,2297)": { - tag: "(0010,2297)", - vr: "PN", - vm: "1", - name: "ResponsiblePerson", - }, - "(0010,2298)": { - tag: "(0010,2298)", - vr: "CS", - vm: "1", - name: "ResponsiblePersonRole", - }, - "(0010,2299)": { - tag: "(0010,2299)", - vr: "LO", - vm: "1", - name: "ResponsibleOrganization", - }, - "(0010,4000)": { - tag: "(0010,4000)", - vr: "LT", - vm: "1", - name: "PatientComments", - }, - "(0010,9431)": { - tag: "(0010,9431)", - vr: "FL", - vm: "1", - name: "ExaminedBodyThickness", - }, - "(0012,0010)": { - tag: "(0012,0010)", - vr: "LO", - vm: "1", - name: "ClinicalTrialSponsorName", - }, - "(0012,0020)": { - tag: "(0012,0020)", - vr: "LO", - vm: "1", - name: "ClinicalTrialProtocolID", - }, - "(0012,0021)": { - tag: "(0012,0021)", - vr: "LO", - vm: "1", - name: "ClinicalTrialProtocolName", - }, - "(0012,0030)": { - tag: "(0012,0030)", - vr: "LO", - vm: "1", - name: "ClinicalTrialSiteID", - }, - "(0012,0031)": { - tag: "(0012,0031)", - vr: "LO", - vm: "1", - name: "ClinicalTrialSiteName", - }, - "(0012,0040)": { - tag: "(0012,0040)", - vr: "LO", - vm: "1", - name: "ClinicalTrialSubjectID", - }, - "(0012,0042)": { - tag: "(0012,0042)", - vr: "LO", - vm: "1", - name: "ClinicalTrialSubjectReadingID", - }, - "(0012,0050)": { - tag: "(0012,0050)", - vr: "LO", - vm: "1", - name: "ClinicalTrialTimePointID", - }, - "(0012,0051)": { - tag: "(0012,0051)", - vr: "ST", - vm: "1", - name: "ClinicalTrialTimePointDescription", - }, - "(0012,0052)": { - tag: "(0012,0052)", - vr: "FD", - 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vm: "1", - name: "ComponentManufacturer", - }, - "(0014,0030)": { - tag: "(0014,0030)", - vr: "DS", - vm: "1-n", - name: "MaterialThickness", - }, - "(0014,0032)": { - tag: "(0014,0032)", - vr: "DS", - vm: "1-n", - name: "MaterialPipeDiameter", - }, - "(0014,0034)": { - tag: "(0014,0034)", - vr: "DS", - vm: "1-n", - name: "MaterialIsolationDiameter", - }, - "(0014,0042)": { - tag: "(0014,0042)", - vr: "ST", - vm: "1", - name: "MaterialGrade", - }, - "(0014,0044)": { - tag: "(0014,0044)", - vr: "ST", - vm: "1", - name: "MaterialPropertiesDescription", - }, - "(0014,0045)": { - tag: "(0014,0045)", - vr: "ST", - vm: "1", - name: "MaterialPropertiesFileFormatRetired", - }, - "(0014,0046)": { - tag: "(0014,0046)", - vr: "LT", - vm: "1", - name: "MaterialNotes", - }, - "(0014,0050)": { - tag: "(0014,0050)", - vr: "CS", - vm: "1", - name: "ComponentShape", - }, - "(0014,0052)": { - tag: "(0014,0052)", - vr: "CS", - vm: "1", - name: "CurvatureType", - }, - "(0014,0054)": { - tag: "(0014,0054)", - 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vm: "1-n", - name: "OtherSecondaryApprovalStatus", - }, - "(0014,1010)": { - tag: "(0014,1010)", - vr: "ST", - vm: "1", - name: "ActualEnvironmentalConditions", - }, - "(0014,1020)": { tag: "(0014,1020)", vr: "DA", vm: "1", name: "ExpiryDate" }, - "(0014,1040)": { - tag: "(0014,1040)", - vr: "ST", - vm: "1", - name: "EnvironmentalConditions", - }, - "(0014,2002)": { - tag: "(0014,2002)", - vr: "SQ", - vm: "1", - name: "EvaluatorSequence", - }, - "(0014,2004)": { - tag: "(0014,2004)", - vr: "IS", - vm: "1", - name: "EvaluatorNumber", - }, - "(0014,2006)": { - tag: "(0014,2006)", - vr: "PN", - vm: "1", - name: "EvaluatorName", - }, - "(0014,2008)": { - tag: "(0014,2008)", - vr: "IS", - vm: "1", - name: "EvaluationAttempt", - }, - "(0014,2012)": { - tag: "(0014,2012)", - vr: "SQ", - vm: "1", - name: "IndicationSequence", - }, - "(0014,2014)": { - tag: "(0014,2014)", - vr: "IS", - vm: "1", - name: "IndicationNumber", - }, - "(0014,2016)": { - tag: "(0014,2016)", - vr: "SH", - vm: "1", - name: "IndicationLabel", - }, - "(0014,2018)": { - tag: "(0014,2018)", - vr: "ST", - vm: "1", - name: "IndicationDescription", - }, - "(0014,201A)": { - tag: "(0014,201A)", - vr: "CS", - vm: "1-n", - name: "IndicationType", - }, - "(0014,201C)": { - tag: "(0014,201C)", - vr: "CS", - vm: "1", - name: "IndicationDisposition", - }, - "(0014,201E)": { - tag: "(0014,201E)", - vr: "SQ", - vm: "1", - name: "IndicationROISequence", - }, - "(0014,2030)": { - tag: "(0014,2030)", - vr: "SQ", - vm: "1", - name: "IndicationPhysicalPropertySequence", - }, - "(0014,2032)": { - tag: "(0014,2032)", - vr: "SH", - vm: "1", - name: "PropertyLabel", - }, - "(0014,2202)": { - tag: "(0014,2202)", - vr: "IS", - vm: "1", - name: "CoordinateSystemNumberOfAxes", - }, - "(0014,2204)": { - tag: "(0014,2204)", - vr: "SQ", - vm: "1", - name: "CoordinateSystemAxesSequence", - }, - "(0014,2206)": { - tag: "(0014,2206)", - vr: "ST", - vm: "1", - name: "CoordinateSystemAxisDescription", - }, - "(0014,2208)": { - tag: "(0014,2208)", - vr: "CS", - vm: "1", - name: "CoordinateSystemDataSetMapping", - }, - "(0014,220A)": { - tag: "(0014,220A)", - vr: "IS", - vm: "1", - name: "CoordinateSystemAxisNumber", - }, - "(0014,220C)": { - tag: "(0014,220C)", - vr: "CS", - vm: "1", - name: "CoordinateSystemAxisType", - }, - "(0014,220E)": { - tag: "(0014,220E)", - vr: "CS", - vm: "1", - name: "CoordinateSystemAxisUnits", - }, - "(0014,2210)": { - tag: "(0014,2210)", - vr: "OB", - vm: "1", - name: "CoordinateSystemAxisValues", - }, - "(0014,2220)": { - tag: "(0014,2220)", - vr: "SQ", - vm: "1", - name: "CoordinateSystemTransformSequence", - }, - "(0014,2222)": { - tag: "(0014,2222)", - vr: "ST", - vm: "1", - name: "TransformDescription", - }, - "(0014,2224)": { - tag: "(0014,2224)", - vr: "IS", - vm: "1", - name: "TransformNumberOfAxes", - }, - "(0014,2226)": { - tag: "(0014,2226)", - vr: "IS", - vm: "1-n", - name: "TransformOrderOfAxes", - }, - "(0014,2228)": { - tag: "(0014,2228)", - vr: "CS", - vm: "1", - name: "TransformedAxisUnits", - }, - 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vr: "SQ", - vm: "1", - name: "DarkCurrentSequence", - }, - "(0014,3050)": { - tag: "(0014,3050)", - vr: "OB|OW", - vm: "1", - name: "DarkCurrentCounts", - }, - "(0014,3060)": { - tag: "(0014,3060)", - vr: "SQ", - vm: "1", - name: "GainCorrectionReferenceSequence", - }, - "(0014,3070)": { - tag: "(0014,3070)", - vr: "OB|OW", - vm: "1", - name: "AirCounts", - }, - "(0014,3071)": { - tag: "(0014,3071)", - vr: "DS", - vm: "1", - name: "KVUsedInGainCalibration", - }, - "(0014,3072)": { - tag: "(0014,3072)", - vr: "DS", - vm: "1", - name: "MAUsedInGainCalibration", - }, - "(0014,3073)": { - tag: "(0014,3073)", - vr: "DS", - vm: "1", - name: "NumberOfFramesUsedForIntegration", - }, - "(0014,3074)": { - tag: "(0014,3074)", - vr: "LO", - vm: "1", - name: "FilterMaterialUsedInGainCalibration", - }, - "(0014,3075)": { - tag: "(0014,3075)", - vr: "DS", - vm: "1", - name: "FilterThicknessUsedInGainCalibration", - }, - "(0014,3076)": { - tag: "(0014,3076)", - vr: "DA", - vm: "1", - name: "DateOfGainCalibration", - }, - "(0014,3077)": { - tag: "(0014,3077)", - vr: "TM", - vm: "1", - name: "TimeOfGainCalibration", - }, - "(0014,3080)": { - tag: "(0014,3080)", - vr: "OB", - vm: "1", - name: "BadPixelImage", - }, - "(0014,3099)": { - tag: "(0014,3099)", - vr: "LT", - vm: "1", - name: "CalibrationNotes", - }, - "(0014,3100)": { - tag: "(0014,3100)", - vr: "LT", - vm: "1", - name: "LinearityCorrectionTechnique", - }, - "(0014,3101)": { - tag: "(0014,3101)", - vr: "LT", - vm: "1", - name: "BeamHardeningCorrectionTechnique", - }, - "(0014,4002)": { - tag: "(0014,4002)", - vr: "SQ", - vm: "1", - name: "PulserEquipmentSequence", - }, - "(0014,4004)": { tag: "(0014,4004)", vr: "CS", vm: "1", name: "PulserType" }, - "(0014,4006)": { tag: "(0014,4006)", vr: "LT", vm: "1", name: "PulserNotes" }, - "(0014,4008)": { - tag: "(0014,4008)", - vr: "SQ", - vm: "1", - name: "ReceiverEquipmentSequence", - }, - "(0014,400A)": { - tag: "(0014,400A)", - vr: "CS", - vm: "1", - name: "AmplifierType", - }, - "(0014,400C)": { - tag: "(0014,400C)", - vr: "LT", - vm: "1", - name: "ReceiverNotes", - }, - "(0014,400E)": { - tag: "(0014,400E)", - vr: "SQ", - vm: "1", - name: "PreAmplifierEquipmentSequence", - }, - "(0014,400F)": { - tag: "(0014,400F)", - vr: "LT", - vm: "1", - name: "PreAmplifierNotes", - }, - "(0014,4010)": { - tag: "(0014,4010)", - vr: "SQ", - vm: "1", - name: "TransmitTransducerSequence", - }, - "(0014,4011)": { - tag: "(0014,4011)", - vr: "SQ", - vm: "1", - name: "ReceiveTransducerSequence", - }, - "(0014,4012)": { - tag: "(0014,4012)", - vr: "US", - vm: "1", - name: "NumberOfElements", - }, - "(0014,4013)": { - tag: "(0014,4013)", - vr: "CS", - vm: "1", - name: "ElementShape", - }, - "(0014,4014)": { - tag: "(0014,4014)", - vr: "DS", - vm: "1", - name: "ElementDimensionA", - }, - "(0014,4015)": { - tag: "(0014,4015)", - vr: "DS", - vm: "1", - name: "ElementDimensionB", - }, - "(0014,4016)": { - tag: "(0014,4016)", - vr: "DS", - vm: "1", - name: "ElementPitchA", - }, - "(0014,4017)": { - tag: "(0014,4017)", - vr: "DS", - vm: "1", - name: "MeasuredBeamDimensionA", - }, - "(0014,4018)": { - tag: "(0014,4018)", - vr: "DS", - vm: "1", - name: "MeasuredBeamDimensionB", - }, - "(0014,4019)": { - tag: "(0014,4019)", - vr: "DS", - vm: "1", - name: "LocationOfMeasuredBeamDiameter", - }, - "(0014,401A)": { - tag: "(0014,401A)", - vr: "DS", - vm: "1", - name: "NominalFrequency", - }, - "(0014,401B)": { - tag: "(0014,401B)", - vr: "DS", - vm: "1", - name: "MeasuredCenterFrequency", - }, - "(0014,401C)": { - tag: "(0014,401C)", - vr: "DS", - vm: "1", - name: "MeasuredBandwidth", - }, - "(0014,401D)": { - tag: "(0014,401D)", - vr: "DS", - vm: "1", - name: "ElementPitchB", - }, - "(0014,4020)": { - tag: "(0014,4020)", - vr: "SQ", - vm: "1", - name: "PulserSettingsSequence", - }, - "(0014,4022)": { tag: "(0014,4022)", vr: "DS", vm: "1", name: "PulseWidth" }, - "(0014,4024)": { - tag: "(0014,4024)", - vr: "DS", - vm: "1", - name: "ExcitationFrequency", - }, - "(0014,4026)": { - tag: "(0014,4026)", - vr: "CS", - vm: "1", - name: "ModulationType", - }, - "(0014,4028)": { tag: "(0014,4028)", vr: "DS", vm: "1", name: "Damping" }, - "(0014,4030)": { - tag: "(0014,4030)", - vr: "SQ", - vm: "1", - name: "ReceiverSettingsSequence", - }, - "(0014,4031)": { - tag: "(0014,4031)", - vr: "DS", - vm: "1", - name: "AcquiredSoundpathLength", - }, - "(0014,4032)": { - tag: "(0014,4032)", - vr: "CS", - vm: "1", - name: "AcquisitionCompressionType", - }, - "(0014,4033)": { - tag: "(0014,4033)", - vr: "IS", - vm: "1", - name: "AcquisitionSampleSize", - }, - "(0014,4034)": { - tag: "(0014,4034)", - vr: "DS", - vm: "1", - name: "RectifierSmoothing", - }, - "(0014,4035)": { tag: "(0014,4035)", vr: "SQ", vm: "1", name: "DACSequence" }, - "(0014,4036)": { tag: "(0014,4036)", vr: "CS", vm: "1", name: "DACType" }, - "(0014,4038)": { - tag: "(0014,4038)", - vr: "DS", - vm: "1-n", - name: "DACGainPoints", - }, - "(0014,403A)": { - tag: "(0014,403A)", - vr: "DS", - vm: "1-n", - name: "DACTimePoints", - }, - "(0014,403C)": { - tag: "(0014,403C)", - vr: "DS", - vm: "1-n", - name: "DACAmplitude", - }, - "(0014,4040)": { - tag: "(0014,4040)", - vr: "SQ", - vm: "1", - name: "PreAmplifierSettingsSequence", - }, - "(0014,4050)": { - tag: "(0014,4050)", - vr: "SQ", - vm: "1", - name: "TransmitTransducerSettingsSequence", - }, - "(0014,4051)": { - tag: "(0014,4051)", - vr: "SQ", - vm: "1", - name: "ReceiveTransducerSettingsSequence", - }, - "(0014,4052)": { - tag: "(0014,4052)", - vr: "DS", - vm: "1", - name: "IncidentAngle", - }, - "(0014,4054)": { - tag: "(0014,4054)", - vr: "ST", - vm: "1", - name: "CouplingTechnique", - }, - "(0014,4056)": { - tag: "(0014,4056)", - vr: "ST", - vm: "1", - name: "CouplingMedium", - }, - "(0014,4057)": { - tag: "(0014,4057)", - vr: "DS", - vm: "1", - name: "CouplingVelocity", - }, - "(0014,4058)": { - tag: "(0014,4058)", - vr: "DS", - vm: "1", - name: "ProbeCenterLocationX", - }, - "(0014,4059)": { - tag: "(0014,4059)", - vr: "DS", - vm: "1", - name: "ProbeCenterLocationZ", - }, - "(0014,405A)": { - tag: "(0014,405A)", - vr: "DS", - vm: "1", - name: "SoundPathLength", - }, - "(0014,405C)": { - tag: "(0014,405C)", - vr: "ST", - vm: "1", - name: "DelayLawIdentifier", - }, - "(0014,4060)": { - tag: "(0014,4060)", - vr: "SQ", - vm: "1", - name: "GateSettingsSequence", - }, - "(0014,4062)": { - tag: "(0014,4062)", - vr: "DS", - vm: "1", - name: "GateThreshold", - }, - "(0014,4064)": { - tag: "(0014,4064)", - vr: "DS", - vm: "1", - name: "VelocityOfSound", - }, - "(0014,4070)": { - tag: "(0014,4070)", - vr: "SQ", - vm: "1", - name: "CalibrationSettingsSequence", - }, - "(0014,4072)": { - tag: "(0014,4072)", - vr: "ST", - vm: "1", - name: "CalibrationProcedure", - }, - "(0014,4074)": { - tag: "(0014,4074)", - vr: "SH", - vm: "1", - name: "ProcedureVersion", - }, - "(0014,4076)": { - tag: "(0014,4076)", - vr: "DA", - vm: "1", - name: "ProcedureCreationDate", - }, - "(0014,4078)": { - tag: "(0014,4078)", - vr: "DA", - vm: "1", - name: "ProcedureExpirationDate", - }, - "(0014,407A)": { - tag: "(0014,407A)", - vr: "DA", - vm: "1", - name: "ProcedureLastModifiedDate", - }, - "(0014,407C)": { - tag: "(0014,407C)", - vr: "TM", - vm: "1-n", - name: "CalibrationTime", - }, - "(0014,407E)": { - tag: "(0014,407E)", - vr: "DA", - vm: "1-n", - name: "CalibrationDate", - }, - "(0014,4080)": { - tag: "(0014,4080)", - vr: "SQ", - vm: "1", - name: "ProbeDriveEquipmentSequence", - }, - "(0014,4081)": { tag: "(0014,4081)", vr: "CS", vm: "1", name: "DriveType" }, - "(0014,4082)": { - tag: "(0014,4082)", - vr: "LT", - vm: "1", - name: "ProbeDriveNotes", - }, - "(0014,4083)": { - tag: "(0014,4083)", - vr: "SQ", - vm: "1", - name: "DriveProbeSequence", - }, - "(0014,4084)": { - tag: "(0014,4084)", - vr: "DS", - vm: "1", - name: "ProbeInductance", - }, - "(0014,4085)": { - tag: "(0014,4085)", - vr: "DS", - vm: "1", - name: "ProbeResistance", - }, - "(0014,4086)": { - tag: "(0014,4086)", - vr: "SQ", - vm: "1", - name: "ReceiveProbeSequence", - }, - "(0014,4087)": { - tag: "(0014,4087)", - vr: "SQ", - vm: "1", - name: "ProbeDriveSettingsSequence", - }, - "(0014,4088)": { - tag: "(0014,4088)", - vr: "DS", - vm: "1", - name: "BridgeResistors", - }, - "(0014,4089)": { - tag: "(0014,4089)", - vr: "DS", - vm: "1", - name: "ProbeOrientationAngle", - }, - "(0014,408B)": { - tag: "(0014,408B)", - vr: "DS", - vm: "1", - name: "UserSelectedGainY", - }, - "(0014,408C)": { - tag: "(0014,408C)", - vr: "DS", - vm: "1", - name: "UserSelectedPhase", - }, - "(0014,408D)": { - tag: "(0014,408D)", - vr: "DS", - vm: "1", - name: "UserSelectedOffsetX", - }, - "(0014,408E)": { - tag: "(0014,408E)", - vr: "DS", - vm: "1", - name: "UserSelectedOffsetY", - }, - "(0014,4091)": { - tag: "(0014,4091)", - vr: "SQ", - vm: "1", - name: "ChannelSettingsSequence", - }, - "(0014,4092)": { - tag: "(0014,4092)", - vr: "DS", - vm: "1", - name: "ChannelThreshold", - }, - "(0014,409A)": { - tag: "(0014,409A)", - vr: "SQ", - vm: "1", - name: "ScannerSettingsSequence", - }, - "(0014,409B)": { - tag: "(0014,409B)", - vr: "ST", - vm: "1", - name: "ScanProcedure", - }, - "(0014,409C)": { - tag: "(0014,409C)", - vr: "DS", - vm: "1", - name: "TranslationRateX", - }, - "(0014,409D)": { - tag: "(0014,409D)", - vr: "DS", - vm: "1", - name: "TranslationRateY", - }, - "(0014,409F)": { - tag: "(0014,409F)", - vr: "DS", - vm: "1", - name: "ChannelOverlap", - }, - "(0014,40A0)": { - tag: "(0014,40A0)", - vr: "LO", - vm: "1-n", - name: "ImageQualityIndicatorType", - }, - "(0014,40A1)": { - tag: "(0014,40A1)", - vr: "LO", - vm: "1-n", - name: "ImageQualityIndicatorMaterial", - }, - "(0014,40A2)": { - tag: "(0014,40A2)", - vr: "LO", - vm: "1-n", - name: "ImageQualityIndicatorSize", - }, - "(0014,5002)": { tag: "(0014,5002)", vr: "IS", vm: "1", name: "LINACEnergy" }, - "(0014,5004)": { tag: "(0014,5004)", vr: "IS", vm: "1", name: "LINACOutput" }, - "(0014,5100)": { - tag: "(0014,5100)", - vr: "US", - vm: "1", - name: "ActiveAperture", - }, - "(0014,5101)": { - tag: "(0014,5101)", - vr: "DS", - vm: "1", - name: "TotalAperture", - }, - "(0014,5102)": { - tag: "(0014,5102)", - vr: "DS", - vm: "1", - name: "ApertureElevation", - }, - "(0014,5103)": { - tag: "(0014,5103)", - vr: "DS", - vm: "1", - name: "MainLobeAngle", - }, - "(0014,5104)": { - tag: "(0014,5104)", - vr: "DS", - vm: "1", - name: "MainRoofAngle", - }, - "(0014,5105)": { - tag: "(0014,5105)", - vr: "CS", - vm: "1", - name: "ConnectorType", - }, - "(0014,5106)": { - tag: "(0014,5106)", - vr: "SH", - vm: "1", - name: "WedgeModelNumber", - }, - "(0014,5107)": { - tag: "(0014,5107)", - vr: "DS", - vm: "1", - name: "WedgeAngleFloat", - }, - "(0014,5108)": { - tag: "(0014,5108)", - vr: "DS", - vm: "1", - name: "WedgeRoofAngle", - }, - "(0014,5109)": { - tag: "(0014,5109)", - vr: "CS", - vm: "1", - name: "WedgeElement1Position", - }, - "(0014,510A)": { - tag: "(0014,510A)", - vr: "DS", - vm: "1", - name: "WedgeMaterialVelocity", - }, - "(0014,510B)": { - tag: "(0014,510B)", - vr: "SH", - vm: "1", - name: "WedgeMaterial", - }, - "(0014,510C)": { - tag: "(0014,510C)", - vr: "DS", - vm: "1", - name: "WedgeOffsetZ", - }, - "(0014,510D)": { - tag: "(0014,510D)", - vr: "DS", - vm: "1", - name: "WedgeOriginOffsetX", - }, - "(0014,510E)": { - tag: "(0014,510E)", - vr: "DS", - vm: "1", - name: "WedgeTimeDelay", - }, - "(0014,510F)": { tag: "(0014,510F)", vr: "SH", vm: "1", name: "WedgeName" }, - "(0014,5110)": { - tag: "(0014,5110)", - vr: "SH", - vm: "1", - name: "WedgeManufacturerName", - }, - "(0014,5111)": { - tag: "(0014,5111)", - vr: "LO", - vm: "1", - name: "WedgeDescription", - }, - "(0014,5112)": { - tag: "(0014,5112)", - vr: "DS", - vm: "1", - name: "NominalBeamAngle", - }, - "(0014,5113)": { - tag: "(0014,5113)", - vr: "DS", - vm: "1", - name: "WedgeOffsetX", - }, - "(0014,5114)": { - tag: "(0014,5114)", - vr: "DS", - vm: "1", - name: "WedgeOffsetY", - }, - "(0014,5115)": { - tag: "(0014,5115)", - vr: "DS", - vm: "1", - name: "WedgeTotalLength", - }, - "(0014,5116)": { - tag: "(0014,5116)", - vr: "DS", - vm: "1", - name: "WedgeInContactLength", - }, - "(0014,5117)": { - tag: "(0014,5117)", - vr: "DS", - vm: "1", - name: "WedgeFrontGap", - }, - "(0014,5118)": { - tag: "(0014,5118)", - vr: "DS", - vm: "1", - name: "WedgeTotalHeight", - }, - "(0014,5119)": { - tag: "(0014,5119)", - vr: "DS", - vm: "1", - name: "WedgeFrontHeight", - }, - "(0014,511A)": { - tag: "(0014,511A)", - vr: "DS", - vm: "1", - name: "WedgeRearHeight", - }, - "(0014,511B)": { - tag: "(0014,511B)", - vr: "DS", - vm: "1", - name: "WedgeTotalWidth", - }, - "(0014,511C)": { - tag: "(0014,511C)", - vr: "DS", - vm: "1", - name: "WedgeInContactWidth", - }, - "(0014,511D)": { - tag: "(0014,511D)", - vr: "DS", - vm: "1", - name: "WedgeChamferHeight", - }, - "(0014,511E)": { tag: "(0014,511E)", vr: "CS", vm: "1", name: "WedgeCurve" }, - "(0014,511F)": { - tag: "(0014,511F)", - vr: "DS", - vm: "1", - name: "RadiusAlongWedge", - }, - "(0016,0001)": { tag: "(0016,0001)", vr: "DS", vm: "1", name: "WhitePoint" }, - "(0016,0002)": { - tag: "(0016,0002)", - vr: "DS", - vm: "3", - name: "PrimaryChromaticities", - }, - "(0016,0003)": { - tag: "(0016,0003)", - vr: "UT", - vm: "1", - name: "BatteryLevel", - }, - "(0016,0004)": { - tag: "(0016,0004)", - vr: "DS", - vm: "1", - name: "ExposureTimeInSeconds", - }, - "(0016,0005)": { tag: "(0016,0005)", vr: "DS", vm: "1", name: "FNumber" }, - "(0016,0006)": { tag: "(0016,0006)", vr: "IS", vm: "1", name: "OECFRows" }, - "(0016,0007)": { tag: "(0016,0007)", vr: "IS", vm: "1", name: "OECFColumns" }, - "(0016,0008)": { - tag: "(0016,0008)", - vr: "UC", - vm: "1-n", - name: "OECFColumnNames", - }, - "(0016,0009)": { - tag: "(0016,0009)", - vr: "DS", - vm: "1-n", - name: "OECFValues", - }, - "(0016,000A)": { - tag: "(0016,000A)", - vr: "IS", - vm: "1", - name: "SpatialFrequencyResponseRows", - }, - "(0016,000B)": { - tag: "(0016,000B)", - vr: "IS", - vm: "1", - name: "SpatialFrequencyResponseColumns", - }, - "(0016,000C)": { - tag: "(0016,000C)", - vr: "UC", - vm: "1-n", - name: "SpatialFrequencyResponseColumnNames", - }, - "(0016,000D)": { - tag: "(0016,000D)", - vr: "DS", - vm: "1-n", - name: "SpatialFrequencyResponseValues", - }, - "(0016,000E)": { - tag: "(0016,000E)", - vr: "IS", - vm: "1", - name: "ColorFilterArrayPatternRows", - }, - "(0016,000F)": { - tag: "(0016,000F)", - vr: "IS", - vm: "1", - name: "ColorFilterArrayPatternColumns", - }, - "(0016,0010)": { - tag: "(0016,0010)", - vr: "DS", - vm: "1-n", - name: "ColorFilterArrayPatternValues", - }, - "(0016,0011)": { - tag: "(0016,0011)", - vr: "US", - vm: "1", - name: "FlashFiringStatus", - }, - "(0016,0012)": { - tag: "(0016,0012)", - vr: "US", - vm: "1", - name: "FlashReturnStatus", - }, - "(0016,0013)": { tag: "(0016,0013)", vr: "US", vm: "1", name: "FlashMode" }, - "(0016,0014)": { - tag: "(0016,0014)", - vr: "US", - vm: "1", - name: "FlashFunctionPresent", - }, - "(0016,0015)": { - tag: "(0016,0015)", - vr: "US", - vm: "1", - name: "FlashRedEyeMode", - }, - "(0016,0016)": { - tag: "(0016,0016)", - vr: "US", - vm: "1", - name: "ExposureProgram", - }, - "(0016,0017)": { - tag: "(0016,0017)", - vr: "UT", - vm: "1", - name: "SpectralSensitivity", - }, - "(0016,0018)": { - tag: "(0016,0018)", - vr: "IS", - vm: "1", - name: "PhotographicSensitivity", - }, - "(0016,0019)": { - tag: "(0016,0019)", - vr: "IS", - vm: "1", - name: "SelfTimerMode", - }, - "(0016,001A)": { - tag: "(0016,001A)", - vr: "US", - vm: "1", - name: "SensitivityType", - }, - "(0016,001B)": { - tag: "(0016,001B)", - vr: "IS", - vm: "1", - name: "StandardOutputSensitivity", - }, - "(0016,001C)": { - tag: "(0016,001C)", - vr: "IS", - vm: "1", - name: "RecommendedExposureIndex", - }, - "(0016,001D)": { tag: "(0016,001D)", vr: "IS", vm: "1", name: "ISOSpeed" }, - "(0016,001E)": { - tag: "(0016,001E)", - vr: "IS", - vm: "1", - name: "ISOSpeedLatitudeyyy", - }, - "(0016,001F)": { - tag: "(0016,001F)", - vr: "IS", - vm: "1", - name: "ISOSpeedLatitudezzz", - }, - "(0016,0020)": { tag: "(0016,0020)", vr: "UT", vm: "1", name: "EXIFVersion" }, - "(0016,0021)": { - tag: "(0016,0021)", - vr: "DS", - vm: "1", - name: "ShutterSpeedValue", - }, - "(0016,0022)": { - tag: "(0016,0022)", - vr: "DS", - vm: "1", - name: "ApertureValue", - }, - "(0016,0023)": { - tag: "(0016,0023)", - vr: "DS", - vm: "1", - name: "BrightnessValue", - }, - "(0016,0024)": { - tag: "(0016,0024)", - vr: "DS", - vm: "1", - name: "ExposureBiasValue", - }, - "(0016,0025)": { - tag: "(0016,0025)", - vr: "DS", - vm: "1", - name: "MaxApertureValue", - }, - "(0016,0026)": { - tag: "(0016,0026)", - vr: "DS", - vm: "1", - name: "SubjectDistance", - }, - "(0016,0027)": { - tag: "(0016,0027)", - vr: "US", - vm: "1", - name: "MeteringMode", - }, - "(0016,0028)": { tag: "(0016,0028)", vr: "US", vm: "1", name: "LightSource" }, - "(0016,0029)": { tag: "(0016,0029)", vr: "DS", vm: "1", name: "FocalLength" }, - "(0016,002A)": { - tag: "(0016,002A)", - vr: "IS", - vm: "2-4", - name: "SubjectArea", - }, - "(0016,002B)": { tag: "(0016,002B)", vr: "OB", vm: "1", name: "MakerNote" }, - "(0016,0030)": { tag: "(0016,0030)", vr: "DS", vm: "1", name: "Temperature" }, - "(0016,0031)": { tag: "(0016,0031)", vr: "DS", vm: "1", name: "Humidity" }, - "(0016,0032)": { tag: "(0016,0032)", vr: "DS", vm: "1", name: "Pressure" }, - "(0016,0033)": { tag: "(0016,0033)", vr: "DS", vm: "1", name: "WaterDepth" }, - "(0016,0034)": { - tag: "(0016,0034)", - vr: "DS", - vm: "1", - name: "Acceleration", - }, - "(0016,0035)": { - tag: "(0016,0035)", - vr: "DS", - vm: "1", - name: "CameraElevationAngle", - }, - "(0016,0036)": { - tag: "(0016,0036)", - vr: "DS", - vm: "1-2", - name: "FlashEnergy", - }, - "(0016,0037)": { - tag: "(0016,0037)", - vr: "IS", - vm: "2", - name: "SubjectLocation", - }, - "(0016,0038)": { - tag: "(0016,0038)", - vr: "DS", - vm: "1", - name: "PhotographicExposureIndex", - }, - "(0016,0039)": { - tag: "(0016,0039)", - vr: "US", - vm: "1", - name: "SensingMethod", - }, - "(0016,003A)": { tag: "(0016,003A)", vr: "US", vm: "1", name: "FileSource" }, - "(0016,003B)": { tag: "(0016,003B)", vr: "US", vm: "1", name: "SceneType" }, - "(0016,0041)": { - tag: "(0016,0041)", - vr: "US", - vm: "1", - name: "CustomRendered", - }, - "(0016,0042)": { - tag: "(0016,0042)", - vr: "US", - vm: "1", - name: "ExposureMode", - }, - "(0016,0043)": { - tag: "(0016,0043)", - vr: "US", - vm: "1", - name: "WhiteBalance", - }, - "(0016,0044)": { - tag: "(0016,0044)", - vr: "DS", - vm: "1", - name: "DigitalZoomRatio", - }, - "(0016,0045)": { - tag: "(0016,0045)", - vr: "IS", - vm: "1", - name: "FocalLengthIn35mmFilm", - }, - "(0016,0046)": { - tag: "(0016,0046)", - vr: "US", - vm: "1", - name: "SceneCaptureType", - }, - "(0016,0047)": { tag: "(0016,0047)", vr: "US", vm: "1", name: "GainControl" }, - "(0016,0048)": { tag: "(0016,0048)", vr: "US", vm: "1", name: "Contrast" }, - "(0016,0049)": { tag: "(0016,0049)", vr: "US", vm: "1", name: "Saturation" }, - "(0016,004A)": { tag: "(0016,004A)", vr: "US", vm: "1", name: "Sharpness" }, - "(0016,004B)": { - tag: "(0016,004B)", - vr: "OB", - vm: "1", - name: "DeviceSettingDescription", - }, - "(0016,004C)": { - tag: "(0016,004C)", - 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name: "EndingRespiratoryPhase", - }, - "(0020,9250)": { - tag: "(0020,9250)", - vr: "CS", - vm: "1", - name: "RespiratoryTriggerType", - }, - "(0020,9251)": { - tag: "(0020,9251)", - vr: "FD", - vm: "1", - name: "RRIntervalTimeNominal", - }, - "(0020,9252)": { - tag: "(0020,9252)", - vr: "FD", - vm: "1", - name: "ActualCardiacTriggerDelayTime", - }, - "(0020,9253)": { - tag: "(0020,9253)", - vr: "SQ", - vm: "1", - name: "RespiratorySynchronizationSequence", - }, - "(0020,9254)": { - tag: "(0020,9254)", - vr: "FD", - vm: "1", - name: "RespiratoryIntervalTime", - }, - "(0020,9255)": { - tag: "(0020,9255)", - vr: "FD", - vm: "1", - name: "NominalRespiratoryTriggerDelayTime", - }, - "(0020,9256)": { - tag: "(0020,9256)", - vr: "FD", - vm: "1", - name: "RespiratoryTriggerDelayThreshold", - }, - "(0020,9257)": { - tag: "(0020,9257)", - vr: "FD", - vm: "1", - name: "ActualRespiratoryTriggerDelayTime", - }, - "(0020,9301)": { - tag: "(0020,9301)", - vr: "FD", - vm: "3", - name: "ImagePositionVolume", - 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vr: "SQ", - vm: "1", - name: "PlaneOrientationVolumeSequence", - }, - "(0020,9310)": { - tag: "(0020,9310)", - vr: "SQ", - vm: "1", - name: "TemporalPositionSequence", - }, - "(0020,9311)": { - tag: "(0020,9311)", - vr: "CS", - vm: "1", - name: "DimensionOrganizationType", - }, - "(0020,9312)": { - tag: "(0020,9312)", - vr: "UI", - vm: "1", - name: "VolumeFrameOfReferenceUID", - }, - "(0020,9313)": { - tag: "(0020,9313)", - vr: "UI", - vm: "1", - name: "TableFrameOfReferenceUID", - }, - "(0020,9421)": { - tag: "(0020,9421)", - vr: "LO", - vm: "1", - name: "DimensionDescriptionLabel", - }, - "(0020,9450)": { - tag: "(0020,9450)", - vr: "SQ", - vm: "1", - name: "PatientOrientationInFrameSequence", - }, - "(0020,9453)": { tag: "(0020,9453)", vr: "LO", vm: "1", name: "FrameLabel" }, - "(0020,9518)": { - tag: "(0020,9518)", - vr: "US", - vm: "1-n", - name: "AcquisitionIndex", - }, - "(0020,9529)": { - tag: "(0020,9529)", - vr: "SQ", - vm: "1", - name: "ContributingSOPInstancesReferenceSequence", - }, - "(0020,9536)": { - tag: "(0020,9536)", - vr: "US", - vm: "1", - name: "ReconstructionIndex", - }, - "(0022,0001)": { - tag: "(0022,0001)", - vr: "US", - vm: "1", - name: "LightPathFilterPassThroughWavelength", - }, - "(0022,0002)": { - tag: "(0022,0002)", - vr: "US", - vm: "2", - name: "LightPathFilterPassBand", - }, - "(0022,0003)": { - tag: "(0022,0003)", - vr: "US", - vm: "1", - name: "ImagePathFilterPassThroughWavelength", - }, - "(0022,0004)": { - tag: "(0022,0004)", - vr: "US", - vm: "2", - name: "ImagePathFilterPassBand", - }, - "(0022,0005)": { - tag: "(0022,0005)", - vr: "CS", - vm: "1", - name: "PatientEyeMovementCommanded", - }, - "(0022,0006)": { - tag: "(0022,0006)", - vr: "SQ", - vm: "1", - name: "PatientEyeMovementCommandCodeSequence", - }, - "(0022,0007)": { - tag: "(0022,0007)", - vr: "FL", - vm: "1", - name: "SphericalLensPower", - }, - "(0022,0008)": { - tag: "(0022,0008)", - vr: "FL", - vm: "1", - name: "CylinderLensPower", - }, - "(0022,0009)": { - tag: "(0022,0009)", - vr: "FL", - vm: "1", - name: "CylinderAxis", - }, - "(0022,000A)": { - tag: "(0022,000A)", - vr: "FL", - vm: "1", - name: "EmmetropicMagnification", - }, - "(0022,000B)": { - tag: "(0022,000B)", - vr: "FL", - vm: "1", - name: "IntraOcularPressure", - }, - "(0022,000C)": { - tag: "(0022,000C)", - vr: "FL", - vm: "1", - name: "HorizontalFieldOfView", - }, - "(0022,000D)": { - tag: "(0022,000D)", - vr: "CS", - vm: "1", - name: "PupilDilated", - }, - "(0022,000E)": { - tag: "(0022,000E)", - vr: "FL", - vm: "1", - name: "DegreeOfDilation", - }, - "(0022,0010)": { - tag: "(0022,0010)", - vr: "FL", - vm: "1", - name: "StereoBaselineAngle", - }, - "(0022,0011)": { - tag: "(0022,0011)", - vr: "FL", - vm: "1", - name: "StereoBaselineDisplacement", - }, - "(0022,0012)": { - tag: "(0022,0012)", - vr: "FL", - vm: "1", - name: "StereoHorizontalPixelOffset", - }, - "(0022,0013)": { - tag: "(0022,0013)", - vr: "FL", - vm: "1", - name: "StereoVerticalPixelOffset", - }, - "(0022,0014)": { - tag: "(0022,0014)", - 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}, - "(0022,001E)": { - tag: "(0022,001E)", - vr: "FL", - vm: "1", - name: "CameraAngleOfView", - }, - "(0022,0020)": { - tag: "(0022,0020)", - vr: "SQ", - vm: "1", - name: "StereoPairsSequence", - }, - "(0022,0021)": { - tag: "(0022,0021)", - vr: "SQ", - vm: "1", - name: "LeftImageSequence", - }, - "(0022,0022)": { - tag: "(0022,0022)", - vr: "SQ", - vm: "1", - name: "RightImageSequence", - }, - "(0022,0028)": { - tag: "(0022,0028)", - vr: "CS", - vm: "1", - name: "StereoPairsPresent", - }, - "(0022,0030)": { - tag: "(0022,0030)", - vr: "FL", - vm: "1", - name: "AxialLengthOfTheEye", - }, - "(0022,0031)": { - tag: "(0022,0031)", - vr: "SQ", - vm: "1", - name: "OphthalmicFrameLocationSequence", - }, - "(0022,0032)": { - tag: "(0022,0032)", - vr: "FL", - vm: "2-2n", - name: "ReferenceCoordinates", - }, - "(0022,0035)": { - tag: "(0022,0035)", - vr: "FL", - vm: "1", - name: "DepthSpatialResolution", - }, - "(0022,0036)": { - tag: "(0022,0036)", - vr: "FL", - vm: "1", - name: "MaximumDepthDistortion", - }, - "(0022,0037)": { - tag: "(0022,0037)", - vr: "FL", - vm: "1", - name: "AlongScanSpatialResolution", - }, - "(0022,0038)": { - tag: "(0022,0038)", - vr: "FL", - vm: "1", - name: "MaximumAlongScanDistortion", - }, - "(0022,0039)": { - tag: "(0022,0039)", - vr: "CS", - vm: "1", - name: "OphthalmicImageOrientation", - }, - "(0022,0041)": { - tag: "(0022,0041)", - vr: "FL", - vm: "1", - name: "DepthOfTransverseImage", - }, - "(0022,0042)": { - tag: "(0022,0042)", - vr: "SQ", - vm: "1", - name: "MydriaticAgentConcentrationUnitsSequence", - }, - "(0022,0048)": { - tag: "(0022,0048)", - vr: "FL", - vm: "1", - name: "AcrossScanSpatialResolution", - }, - "(0022,0049)": { - tag: "(0022,0049)", - vr: "FL", - vm: "1", - name: "MaximumAcrossScanDistortion", - }, - "(0022,004E)": { - tag: "(0022,004E)", - vr: "DS", - vm: "1", - name: "MydriaticAgentConcentration", - }, - "(0022,0055)": { - tag: "(0022,0055)", - vr: "FL", - vm: "1", - name: "IlluminationWaveLength", - }, - "(0022,0056)": { - tag: "(0022,0056)", - vr: "FL", - vm: "1", - name: "IlluminationPower", - }, - "(0022,0057)": { - tag: "(0022,0057)", - vr: "FL", - vm: "1", - name: "IlluminationBandwidth", - }, - "(0022,0058)": { - tag: "(0022,0058)", - vr: "SQ", - vm: "1", - name: "MydriaticAgentSequence", - }, - "(0022,1007)": { - tag: "(0022,1007)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialMeasurementsRightEyeSequence", - }, - "(0022,1008)": { - tag: "(0022,1008)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialMeasurementsLeftEyeSequence", - }, - "(0022,1009)": { - tag: "(0022,1009)", - vr: "CS", - vm: "1", - name: "OphthalmicAxialMeasurementsDeviceType", - }, - "(0022,1010)": { - tag: "(0022,1010)", - vr: "CS", - vm: "1", - name: "OphthalmicAxialLengthMeasurementsType", - }, - "(0022,1012)": { - tag: "(0022,1012)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthSequence", - }, - "(0022,1019)": { - tag: "(0022,1019)", - vr: "FL", - vm: "1", - name: "OphthalmicAxialLength", - }, - "(0022,1024)": { - tag: "(0022,1024)", - vr: "SQ", - vm: "1", - name: "LensStatusCodeSequence", - }, - "(0022,1025)": { - tag: "(0022,1025)", - vr: "SQ", - vm: "1", - name: "VitreousStatusCodeSequence", - }, - "(0022,1028)": { - tag: "(0022,1028)", - vr: "SQ", - vm: "1", - name: "IOLFormulaCodeSequence", - }, - "(0022,1029)": { - tag: "(0022,1029)", - vr: "LO", - vm: "1", - name: "IOLFormulaDetail", - }, - "(0022,1033)": { - tag: "(0022,1033)", - vr: "FL", - vm: "1", - name: "KeratometerIndex", - }, - "(0022,1035)": { - tag: "(0022,1035)", - vr: "SQ", - vm: "1", - name: "SourceOfOphthalmicAxialLengthCodeSequence", - }, - "(0022,1036)": { - tag: "(0022,1036)", - vr: "SQ", - vm: "1", - name: "SourceOfCornealSizeDataCodeSequence", - }, - "(0022,1037)": { - tag: "(0022,1037)", - vr: "FL", - vm: "1", - name: "TargetRefraction", - }, - "(0022,1039)": { - tag: "(0022,1039)", - vr: "CS", - vm: "1", - name: "RefractiveProcedureOccurred", - }, - "(0022,1040)": { - tag: "(0022,1040)", - vr: "SQ", - vm: "1", - name: "RefractiveSurgeryTypeCodeSequence", - }, - "(0022,1044)": { - tag: "(0022,1044)", - vr: "SQ", - vm: "1", - name: "OphthalmicUltrasoundMethodCodeSequence", - }, - "(0022,1045)": { - tag: "(0022,1045)", - vr: "SQ", - vm: "1", - name: "SurgicallyInducedAstigmatismSequence", - }, - "(0022,1046)": { - tag: "(0022,1046)", - vr: "CS", - vm: "1", - name: "TypeOfOpticalCorrection", - }, - "(0022,1047)": { - tag: "(0022,1047)", - vr: "SQ", - vm: "1", - name: "ToricIOLPowerSequence", - }, - "(0022,1048)": { - tag: "(0022,1048)", - vr: "SQ", - vm: "1", - name: "PredictedToricErrorSequence", - }, - "(0022,1049)": { - tag: "(0022,1049)", - vr: "CS", - vm: "1", - name: "PreSelectedForImplantation", - }, - "(0022,104A)": { - tag: "(0022,104A)", - vr: "SQ", - vm: "1", - name: "ToricIOLPowerForExactEmmetropiaSequence", - }, - "(0022,104B)": { - tag: "(0022,104B)", - vr: "SQ", - vm: "1", - name: "ToricIOLPowerForExactTargetRefractionSequence", - }, - "(0022,1050)": { - tag: "(0022,1050)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthMeasurementsSequence", - }, - "(0022,1053)": { tag: "(0022,1053)", vr: "FL", vm: "1", name: "IOLPower" }, - "(0022,1054)": { - tag: "(0022,1054)", - vr: "FL", - vm: "1", - name: "PredictedRefractiveError", - }, - "(0022,1059)": { - tag: "(0022,1059)", - vr: "FL", - vm: "1", - name: "OphthalmicAxialLengthVelocity", - }, - "(0022,1065)": { - tag: "(0022,1065)", - vr: "LO", - vm: "1", - name: "LensStatusDescription", - }, - "(0022,1066)": { - tag: "(0022,1066)", - vr: "LO", - vm: "1", - name: "VitreousStatusDescription", - }, - "(0022,1090)": { - tag: "(0022,1090)", - vr: "SQ", - vm: "1", - name: "IOLPowerSequence", - }, - "(0022,1092)": { - tag: "(0022,1092)", - vr: "SQ", - vm: "1", - name: "LensConstantSequence", - }, - "(0022,1093)": { - tag: "(0022,1093)", - vr: "LO", - vm: "1", - name: "IOLManufacturer", - }, - "(0022,1094)": { - tag: "(0022,1094)", - vr: "LO", - vm: "1", - name: "LensConstantDescription", - }, - "(0022,1095)": { tag: "(0022,1095)", vr: "LO", vm: "1", name: "ImplantName" }, - "(0022,1096)": { - tag: "(0022,1096)", - vr: "SQ", - vm: "1", - name: "KeratometryMeasurementTypeCodeSequence", - }, - "(0022,1097)": { - tag: "(0022,1097)", - vr: "LO", - vm: "1", - name: "ImplantPartNumber", - }, - "(0022,1100)": { - tag: "(0022,1100)", - vr: "SQ", - vm: "1", - name: "ReferencedOphthalmicAxialMeasurementsSequence", - }, - "(0022,1101)": { - tag: "(0022,1101)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthMeasurementsSegmentNameCodeSequence", - }, - "(0022,1103)": { - tag: "(0022,1103)", - vr: "SQ", - vm: "1", - name: "RefractiveErrorBeforeRefractiveSurgeryCodeSequence", - }, - "(0022,1121)": { - tag: "(0022,1121)", - vr: "FL", - vm: "1", - name: "IOLPowerForExactEmmetropia", - }, - "(0022,1122)": { - tag: "(0022,1122)", - vr: "FL", - vm: "1", - name: "IOLPowerForExactTargetRefraction", - }, - "(0022,1125)": { - tag: "(0022,1125)", - vr: "SQ", - vm: "1", - name: "AnteriorChamberDepthDefinitionCodeSequence", - }, - "(0022,1127)": { - tag: "(0022,1127)", - vr: "SQ", - vm: "1", - name: "LensThicknessSequence", - }, - "(0022,1128)": { - tag: "(0022,1128)", - vr: "SQ", - vm: "1", - name: "AnteriorChamberDepthSequence", - }, - "(0022,112A)": { - tag: "(0022,112A)", - vr: "SQ", - vm: "1", - name: "CalculationCommentSequence", - }, - "(0022,112B)": { - tag: "(0022,112B)", - vr: "CS", - vm: "1", - name: "CalculationCommentType", - }, - "(0022,112C)": { - tag: "(0022,112C)", - vr: "LT", - vm: "1", - name: "CalculationComment", - }, - "(0022,1130)": { - tag: "(0022,1130)", - vr: "FL", - vm: "1", - name: "LensThickness", - }, - "(0022,1131)": { - tag: "(0022,1131)", - vr: "FL", - vm: "1", - name: "AnteriorChamberDepth", - }, - "(0022,1132)": { - tag: "(0022,1132)", - vr: "SQ", - vm: "1", - name: "SourceOfLensThicknessDataCodeSequence", - }, - "(0022,1133)": { - tag: "(0022,1133)", - vr: "SQ", - vm: "1", - name: "SourceOfAnteriorChamberDepthDataCodeSequence", - }, - "(0022,1134)": { - tag: "(0022,1134)", - vr: "SQ", - vm: "1", - name: "SourceOfRefractiveMeasurementsSequence", - }, - "(0022,1135)": { - tag: "(0022,1135)", - vr: "SQ", - vm: "1", - name: "SourceOfRefractiveMeasurementsCodeSequence", - }, - "(0022,1140)": { - tag: "(0022,1140)", - vr: "CS", - vm: "1", - name: "OphthalmicAxialLengthMeasurementModified", - }, - "(0022,1150)": { - tag: "(0022,1150)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthDataSourceCodeSequence", - }, - "(0022,1153)": { - tag: "(0022,1153)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthAcquisitionMethodCodeSequence", - }, - "(0022,1155)": { - tag: "(0022,1155)", - vr: "FL", - vm: "1", - name: "SignalToNoiseRatio", - }, - "(0022,1159)": { - tag: "(0022,1159)", - vr: "LO", - vm: "1", - name: "OphthalmicAxialLengthDataSourceDescription", - }, - "(0022,1210)": { - tag: "(0022,1210)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthMeasurementsTotalLengthSequence", - }, - "(0022,1211)": { - tag: "(0022,1211)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthMeasurementsSegmentalLengthSequence", - }, - "(0022,1212)": { - tag: "(0022,1212)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthMeasurementsLengthSummationSequence", - }, - "(0022,1220)": { - tag: "(0022,1220)", - vr: "SQ", - vm: "1", - name: "UltrasoundOphthalmicAxialLengthMeasurementsSequence", - }, - "(0022,1225)": { - tag: "(0022,1225)", - vr: "SQ", - vm: "1", - name: "OpticalOphthalmicAxialLengthMeasurementsSequence", - }, - "(0022,1230)": { - tag: "(0022,1230)", - vr: "SQ", - vm: "1", - name: "UltrasoundSelectedOphthalmicAxialLengthSequence", - }, - "(0022,1250)": { - tag: "(0022,1250)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthSelectionMethodCodeSequence", - }, - "(0022,1255)": { - tag: "(0022,1255)", - vr: "SQ", - vm: "1", - name: "OpticalSelectedOphthalmicAxialLengthSequence", - }, - "(0022,1257)": { - tag: "(0022,1257)", - vr: "SQ", - vm: "1", - name: "SelectedSegmentalOphthalmicAxialLengthSequence", - }, - "(0022,1260)": { - tag: "(0022,1260)", - vr: "SQ", - vm: "1", - name: "SelectedTotalOphthalmicAxialLengthSequence", - }, - "(0022,1262)": { - tag: "(0022,1262)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthQualityMetricSequence", - }, - "(0022,1265)": { - tag: "(0022,1265)", - vr: "SQ", - vm: "1", - name: "OphthalmicAxialLengthQualityMetricTypeCodeSequence", - }, - "(0022,1273)": { - tag: "(0022,1273)", - vr: "LO", - vm: "1", - name: "OphthalmicAxialLengthQualityMetricTypeDescription", - }, - "(0022,1300)": { - tag: "(0022,1300)", - vr: "SQ", - vm: "1", - name: "IntraocularLensCalculationsRightEyeSequence", - }, - "(0022,1310)": { - tag: "(0022,1310)", - vr: "SQ", - vm: "1", - name: "IntraocularLensCalculationsLeftEyeSequence", - }, - "(0022,1330)": { - tag: "(0022,1330)", - vr: "SQ", - vm: "1", - name: "ReferencedOphthalmicAxialLengthMeasurementQCImageSequence", - }, - "(0022,1415)": { - tag: "(0022,1415)", - vr: "CS", - vm: "1", - name: "OphthalmicMappingDeviceType", - }, - "(0022,1420)": { - tag: "(0022,1420)", - vr: "SQ", - vm: "1", - name: "AcquisitionMethodCodeSequence", - }, - "(0022,1423)": { - tag: "(0022,1423)", - vr: "SQ", - vm: "1", - name: "AcquisitionMethodAlgorithmSequence", - }, - "(0022,1436)": { - tag: "(0022,1436)", - vr: "SQ", - vm: "1", - name: "OphthalmicThicknessMapTypeCodeSequence", - }, - "(0022,1443)": { - tag: "(0022,1443)", - vr: "SQ", - vm: "1", - name: "OphthalmicThicknessMappingNormalsSequence", - }, - "(0022,1445)": { - tag: "(0022,1445)", - vr: "SQ", - vm: "1", - name: "RetinalThicknessDefinitionCodeSequence", - }, - "(0022,1450)": { - tag: "(0022,1450)", - vr: "SQ", - vm: "1", - name: "PixelValueMappingToCodedConceptSequence", - }, - "(0022,1452)": { - tag: "(0022,1452)", - vr: "US|SS", - vm: "1", - name: "MappedPixelValue", - }, - "(0022,1454)": { - tag: "(0022,1454)", - vr: "LO", - vm: "1", - name: "PixelValueMappingExplanation", - }, - "(0022,1458)": { - tag: "(0022,1458)", - vr: "SQ", - vm: "1", - name: "OphthalmicThicknessMapQualityThresholdSequence", - }, - "(0022,1460)": { - tag: "(0022,1460)", - vr: "FL", - vm: "1", - name: "OphthalmicThicknessMapThresholdQualityRating", - }, - "(0022,1463)": { - 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}, - "(0022,1515)": { - tag: "(0022,1515)", - vr: "CS", - vm: "1", - name: "OphthalmicAxialLengthMethod", - }, - "(0022,1517)": { - tag: "(0022,1517)", - vr: "FL", - vm: "1", - name: "OphthalmicFOV", - }, - "(0022,1518)": { - tag: "(0022,1518)", - vr: "SQ", - vm: "1", - name: "TwoDimensionalToThreeDimensionalMapSequence", - }, - "(0022,1525)": { - tag: "(0022,1525)", - vr: "SQ", - vm: "1", - name: "WideFieldOphthalmicPhotographyQualityRatingSequence", - }, - "(0022,1526)": { - tag: "(0022,1526)", - vr: "SQ", - vm: "1", - name: "WideFieldOphthalmicPhotographyQualityThresholdSequence", - }, - "(0022,1527)": { - tag: "(0022,1527)", - vr: "FL", - vm: "1", - name: "WideFieldOphthalmicPhotographyThresholdQualityRating", - }, - "(0022,1528)": { - tag: "(0022,1528)", - vr: "FL", - vm: "1", - name: "XCoordinatesCenterPixelViewAngle", - }, - "(0022,1529)": { - tag: "(0022,1529)", - vr: "FL", - vm: "1", - name: "YCoordinatesCenterPixelViewAngle", - }, - "(0022,1530)": { - tag: "(0022,1530)", - vr: "UL", - vm: "1", - name: "NumberOfMapPoints", - }, - "(0022,1531)": { - tag: "(0022,1531)", - vr: "OF", - vm: "1", - name: "TwoDimensionalToThreeDimensionalMapData", - }, - "(0022,1612)": { - tag: "(0022,1612)", - vr: "SQ", - vm: "1", - name: "DerivationAlgorithmSequence", - }, - "(0022,1615)": { - tag: "(0022,1615)", - vr: "SQ", - vm: "1", - name: "OphthalmicImageTypeCodeSequence", - }, - "(0022,1616)": { - tag: "(0022,1616)", - vr: "LO", - vm: "1", - name: "OphthalmicImageTypeDescription", - }, - "(0022,1618)": { - tag: "(0022,1618)", - vr: "SQ", - vm: "1", - name: "ScanPatternTypeCodeSequence", - }, - "(0022,1620)": { - tag: "(0022,1620)", - vr: "SQ", - vm: "1", - name: "ReferencedSurfaceMeshIdentificationSequence", - }, - "(0022,1622)": { - tag: "(0022,1622)", - vr: "CS", - vm: "1", - name: "OphthalmicVolumetricPropertiesFlag", - }, - "(0022,1624)": { - tag: "(0022,1624)", - vr: "FL", - vm: "1", - name: "OphthalmicAnatomicReferencePointXCoordinate", - }, - "(0022,1626)": { - tag: "(0022,1626)", - 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}, - "(0024,0025)": { - tag: "(0024,0025)", - vr: "FL", - vm: "1", - name: "StimulusArea", - }, - "(0024,0028)": { - tag: "(0024,0028)", - vr: "FL", - vm: "1", - name: "StimulusPresentationTime", - }, - "(0024,0032)": { - tag: "(0024,0032)", - vr: "SQ", - vm: "1", - name: "FixationSequence", - }, - "(0024,0033)": { - tag: "(0024,0033)", - vr: "SQ", - vm: "1", - name: "FixationMonitoringCodeSequence", - }, - "(0024,0034)": { - tag: "(0024,0034)", - vr: "SQ", - vm: "1", - name: "VisualFieldCatchTrialSequence", - }, - "(0024,0035)": { - tag: "(0024,0035)", - vr: "US", - vm: "1", - name: "FixationCheckedQuantity", - }, - "(0024,0036)": { - tag: "(0024,0036)", - vr: "US", - vm: "1", - name: "PatientNotProperlyFixatedQuantity", - }, - "(0024,0037)": { - tag: "(0024,0037)", - vr: "CS", - vm: "1", - name: "PresentedVisualStimuliDataFlag", - }, - "(0024,0038)": { - tag: "(0024,0038)", - vr: "US", - vm: "1", - name: "NumberOfVisualStimuli", - }, - "(0024,0039)": { - tag: "(0024,0039)", - vr: "CS", - 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}, - "(0024,0091)": { - tag: "(0024,0091)", - vr: "FL", - vm: "1", - name: "VisualFieldTestPointYCoordinate", - }, - "(0024,0092)": { - tag: "(0024,0092)", - vr: "FL", - vm: "1", - name: "AgeCorrectedSensitivityDeviationValue", - }, - "(0024,0093)": { - tag: "(0024,0093)", - vr: "CS", - vm: "1", - name: "StimulusResults", - }, - "(0024,0094)": { - tag: "(0024,0094)", - vr: "FL", - vm: "1", - name: "SensitivityValue", - }, - "(0024,0095)": { - tag: "(0024,0095)", - vr: "CS", - vm: "1", - name: "RetestStimulusSeen", - }, - "(0024,0096)": { - tag: "(0024,0096)", - vr: "FL", - vm: "1", - name: "RetestSensitivityValue", - }, - "(0024,0097)": { - tag: "(0024,0097)", - vr: "SQ", - vm: "1", - name: "VisualFieldTestPointNormalsSequence", - }, - "(0024,0098)": { - tag: "(0024,0098)", - vr: "FL", - vm: "1", - name: "QuantifiedDefect", - }, - "(0024,0100)": { - tag: "(0024,0100)", - vr: "FL", - vm: "1", - name: "AgeCorrectedSensitivityDeviationProbabilityValue", - }, - "(0024,0102)": { - tag: "(0024,0102)", - vr: "CS", - vm: "1", - name: "GeneralizedDefectCorrectedSensitivityDeviationFlag", - }, - "(0024,0103)": { - tag: "(0024,0103)", - vr: "FL", - vm: "1", - name: "GeneralizedDefectCorrectedSensitivityDeviationValue", - }, - "(0024,0104)": { - tag: "(0024,0104)", - vr: "FL", - vm: "1", - name: "GeneralizedDefectCorrectedSensitivityDeviationProbabilityValue", - }, - "(0024,0105)": { - tag: "(0024,0105)", - vr: "FL", - vm: "1", - name: "MinimumSensitivityValue", - }, - "(0024,0106)": { - tag: "(0024,0106)", - vr: "CS", - vm: "1", - name: "BlindSpotLocalized", - }, - "(0024,0107)": { - tag: "(0024,0107)", - vr: "FL", - vm: "1", - name: "BlindSpotXCoordinate", - }, - "(0024,0108)": { - tag: "(0024,0108)", - vr: "FL", - vm: "1", - name: "BlindSpotYCoordinate", - }, - "(0024,0110)": { - tag: "(0024,0110)", - vr: "SQ", - vm: "1", - name: "VisualAcuityMeasurementSequence", - }, - "(0024,0112)": { - tag: "(0024,0112)", - vr: "SQ", - vm: "1", - name: "RefractiveParametersUsedOnPatientSequence", - }, - "(0024,0113)": { - tag: "(0024,0113)", - vr: "CS", - vm: "1", - name: "MeasurementLaterality", - }, - "(0024,0114)": { - tag: "(0024,0114)", - vr: "SQ", - vm: "1", - name: "OphthalmicPatientClinicalInformationLeftEyeSequence", - }, - "(0024,0115)": { - tag: "(0024,0115)", - vr: "SQ", - vm: "1", - name: "OphthalmicPatientClinicalInformationRightEyeSequence", - }, - "(0024,0117)": { - tag: "(0024,0117)", - vr: "CS", - vm: "1", - name: "FovealPointNormativeDataFlag", - }, - "(0024,0118)": { - tag: "(0024,0118)", - vr: "FL", - vm: "1", - name: "FovealPointProbabilityValue", - }, - "(0024,0120)": { - tag: "(0024,0120)", - vr: "CS", - vm: "1", - name: "ScreeningBaselineMeasured", - }, - "(0024,0122)": { - tag: "(0024,0122)", - vr: "SQ", - vm: "1", - name: "ScreeningBaselineMeasuredSequence", - }, - "(0024,0124)": { - tag: "(0024,0124)", - vr: "CS", - vm: "1", - name: "ScreeningBaselineType", - }, - "(0024,0126)": { - tag: "(0024,0126)", - vr: "FL", - vm: "1", - name: "ScreeningBaselineValue", - }, - "(0024,0202)": { - tag: "(0024,0202)", - vr: "LO", - vm: "1", - name: "AlgorithmSource", - }, - "(0024,0306)": { tag: "(0024,0306)", vr: "LO", vm: "1", name: "DataSetName" }, - "(0024,0307)": { - tag: "(0024,0307)", - vr: "LO", - vm: "1", - name: "DataSetVersion", - }, - "(0024,0308)": { - tag: "(0024,0308)", - vr: "LO", - vm: "1", - name: "DataSetSource", - }, - "(0024,0309)": { - tag: "(0024,0309)", - vr: "LO", - vm: "1", - name: "DataSetDescription", - }, - "(0024,0317)": { - tag: "(0024,0317)", - vr: "SQ", - vm: "1", - name: "VisualFieldTestReliabilityGlobalIndexSequence", - }, - "(0024,0320)": { - tag: "(0024,0320)", - vr: "SQ", - vm: "1", - name: "VisualFieldGlobalResultsIndexSequence", - }, - "(0024,0325)": { - tag: "(0024,0325)", - vr: "SQ", - vm: "1", - name: "DataObservationSequence", - }, - "(0024,0338)": { - tag: "(0024,0338)", - vr: "CS", - vm: "1", - name: "IndexNormalsFlag", - }, - "(0024,0341)": { - tag: "(0024,0341)", - vr: "FL", - vm: "1", - name: "IndexProbability", - }, - "(0024,0344)": { - tag: "(0024,0344)", - vr: "SQ", - vm: "1", - name: "IndexProbabilitySequence", - }, - "(0028,0002)": { - tag: "(0028,0002)", - vr: "US", - vm: "1", - name: "SamplesPerPixel", - }, - "(0028,0003)": { - tag: "(0028,0003)", - vr: "US", - vm: "1", - name: "SamplesPerPixelUsed", - }, - "(0028,0004)": { - tag: "(0028,0004)", - vr: "CS", - vm: "1", - name: "PhotometricInterpretation", - }, - "(0028,0005)": { - tag: "(0028,0005)", - vr: "US", - vm: "1", - name: "ImageDimensions", - }, - "(0028,0006)": { - tag: "(0028,0006)", - vr: "US", - vm: "1", - name: "PlanarConfiguration", - }, - "(0028,0008)": { - tag: "(0028,0008)", - vr: "IS", - vm: "1", - name: "NumberOfFrames", - }, - "(0028,0009)": { - tag: "(0028,0009)", - vr: "AT", - vm: "1-n", - name: "FrameIncrementPointer", - }, - "(0028,000A)": { - tag: "(0028,000A)", - vr: "AT", - vm: "1-n", - name: "FrameDimensionPointer", - }, - "(0028,0010)": { tag: "(0028,0010)", vr: "US", vm: "1", name: "Rows" }, - "(0028,0011)": { tag: "(0028,0011)", vr: "US", vm: "1", name: "Columns" }, - 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}, - "(0028,7FE0)": { - tag: "(0028,7FE0)", - vr: "UR", - vm: "1", - name: "PixelDataProviderURL", - }, - "(0028,9001)": { - tag: "(0028,9001)", - vr: "UL", - vm: "1", - name: "DataPointRows", - }, - "(0028,9002)": { - tag: "(0028,9002)", - vr: "UL", - vm: "1", - name: "DataPointColumns", - }, - "(0028,9003)": { - tag: "(0028,9003)", - vr: "CS", - vm: "1", - name: "SignalDomainColumns", - }, - "(0028,9099)": { - tag: "(0028,9099)", - vr: "US", - vm: "1", - name: "LargestMonochromePixelValue", - }, - "(0028,9108)": { - tag: "(0028,9108)", - vr: "CS", - vm: "1", - name: "DataRepresentation", - }, - "(0028,9110)": { - tag: "(0028,9110)", - vr: "SQ", - vm: "1", - name: "PixelMeasuresSequence", - }, - "(0028,9132)": { - tag: "(0028,9132)", - vr: "SQ", - vm: "1", - name: "FrameVOILUTSequence", - }, - "(0028,9145)": { - tag: "(0028,9145)", - vr: "SQ", - vm: "1", - name: "PixelValueTransformationSequence", - }, - "(0028,9235)": { - tag: "(0028,9235)", - vr: "CS", - vm: "1", - name: "SignalDomainRows", - 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vm: "1", - name: "StudyStatusID", - }, - "(0032,000C)": { - tag: "(0032,000C)", - vr: "CS", - vm: "1", - name: "StudyPriorityID", - }, - "(0032,0012)": { - tag: "(0032,0012)", - vr: "LO", - vm: "1", - name: "StudyIDIssuer", - }, - "(0032,0032)": { - tag: "(0032,0032)", - vr: "DA", - vm: "1", - name: "StudyVerifiedDate", - }, - "(0032,0033)": { - tag: "(0032,0033)", - vr: "TM", - vm: "1", - name: "StudyVerifiedTime", - }, - "(0032,0034)": { - tag: "(0032,0034)", - vr: "DA", - vm: "1", - name: "StudyReadDate", - }, - "(0032,0035)": { - tag: "(0032,0035)", - vr: "TM", - vm: "1", - name: "StudyReadTime", - }, - "(0032,1000)": { - tag: "(0032,1000)", - vr: "DA", - vm: "1", - name: "ScheduledStudyStartDate", - }, - "(0032,1001)": { - tag: "(0032,1001)", - vr: "TM", - vm: "1", - name: "ScheduledStudyStartTime", - }, - "(0032,1010)": { - tag: "(0032,1010)", - vr: "DA", - vm: "1", - name: "ScheduledStudyStopDate", - }, - "(0032,1011)": { - tag: "(0032,1011)", - vr: "TM", - vm: "1", - name: "ScheduledStudyStopTime", - 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name: "StudyCompletionDate", - }, - "(0032,1051)": { - tag: "(0032,1051)", - vr: "TM", - vm: "1", - name: "StudyCompletionTime", - }, - "(0032,1055)": { - tag: "(0032,1055)", - vr: "CS", - vm: "1", - name: "StudyComponentStatusID", - }, - "(0032,1060)": { - tag: "(0032,1060)", - vr: "LO", - vm: "1", - name: "RequestedProcedureDescription", - }, - "(0032,1064)": { - tag: "(0032,1064)", - vr: "SQ", - vm: "1", - name: "RequestedProcedureCodeSequence", - }, - "(0032,1065)": { - tag: "(0032,1065)", - vr: "SQ", - vm: "1", - name: "RequestedLateralityCodeSequence", - }, - "(0032,1066)": { - tag: "(0032,1066)", - vr: "UT", - vm: "1", - name: "ReasonForVisit", - }, - "(0032,1067)": { - tag: "(0032,1067)", - vr: "SQ", - vm: "1", - name: "ReasonForVisitCodeSequence", - }, - "(0032,1070)": { - tag: "(0032,1070)", - vr: "LO", - vm: "1", - name: "RequestedContrastAgent", - }, - "(0032,4000)": { - tag: "(0032,4000)", - vr: "LT", - vm: "1", - name: "StudyComments", - }, - "(0034,0001)": { - tag: "(0034,0001)", - 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vr: "SQ", - vm: "1", - name: "WaveformPresentationGroupSequence", - }, - "(003A,0241)": { - tag: "(003A,0241)", - vr: "US", - vm: "1", - name: "PresentationGroupNumber", - }, - "(003A,0242)": { - tag: "(003A,0242)", - vr: "SQ", - vm: "1", - name: "ChannelDisplaySequence", - }, - "(003A,0244)": { - tag: "(003A,0244)", - vr: "US", - vm: "3", - name: "ChannelRecommendedDisplayCIELabValue", - }, - "(003A,0245)": { - tag: "(003A,0245)", - vr: "FL", - vm: "1", - name: "ChannelPosition", - }, - "(003A,0246)": { - tag: "(003A,0246)", - vr: "CS", - vm: "1", - name: "DisplayShadingFlag", - }, - "(003A,0247)": { - tag: "(003A,0247)", - vr: "FL", - vm: "1", - name: "FractionalChannelDisplayScale", - }, - "(003A,0248)": { - tag: "(003A,0248)", - vr: "FL", - vm: "1", - name: "AbsoluteChannelDisplayScale", - }, - "(003A,0300)": { - tag: "(003A,0300)", - vr: "SQ", - vm: "1", - name: "MultiplexedAudioChannelsDescriptionCodeSequence", - }, - "(003A,0301)": { - tag: "(003A,0301)", - vr: "IS", - vm: "1", - name: "ChannelIdentificationCode", - }, - "(003A,0302)": { tag: "(003A,0302)", vr: "CS", vm: "1", name: "ChannelMode" }, - "(003A,0310)": { - tag: "(003A,0310)", - vr: "UI", - vm: "1", - name: "MultiplexGroupUID", - }, - "(003A,0311)": { - tag: "(003A,0311)", - vr: "DS", - vm: "1", - name: "PowerlineFrequency", - }, - "(003A,0312)": { - tag: "(003A,0312)", - vr: "SQ", - vm: "1", - name: "ChannelImpedanceSequence", - }, - "(003A,0313)": { - tag: "(003A,0313)", - vr: "DS", - vm: "1", - name: "ImpedanceValue", - }, - "(003A,0314)": { - tag: "(003A,0314)", - vr: "DT", - vm: "1", - name: "ImpedanceMeasurementDateTime", - }, - "(003A,0315)": { - tag: "(003A,0315)", - vr: "DS", - vm: "1", - name: "ImpedanceMeasurementFrequency", - }, - "(003A,0316)": { - tag: "(003A,0316)", - vr: "CS", - vm: "1", - name: "ImpedanceMeasurementCurrentType", - }, - "(0040,0001)": { - tag: "(0040,0001)", - vr: "AE", - vm: "1-n", - name: "ScheduledStationAETitle", - }, - "(0040,0002)": { - tag: "(0040,0002)", - vr: "DA", - vm: "1", - name: "ScheduledProcedureStepStartDate", - }, - "(0040,0003)": { - tag: "(0040,0003)", - vr: "TM", - vm: "1", - name: "ScheduledProcedureStepStartTime", - }, - "(0040,0004)": { - tag: "(0040,0004)", - vr: "DA", - vm: "1", - name: "ScheduledProcedureStepEndDate", - }, - "(0040,0005)": { - tag: "(0040,0005)", - vr: "TM", - vm: "1", - name: "ScheduledProcedureStepEndTime", - }, - "(0040,0006)": { - tag: "(0040,0006)", - vr: "PN", - vm: "1", - name: "ScheduledPerformingPhysicianName", - }, - "(0040,0007)": { - tag: "(0040,0007)", - vr: "LO", - vm: "1", - name: "ScheduledProcedureStepDescription", - }, - "(0040,0008)": { - tag: "(0040,0008)", - vr: "SQ", - vm: "1", - name: "ScheduledProtocolCodeSequence", - }, - "(0040,0009)": { - tag: "(0040,0009)", - vr: "SH", - vm: "1", - name: "ScheduledProcedureStepID", - }, - "(0040,000A)": { - tag: "(0040,000A)", - vr: "SQ", - vm: "1", - name: "StageCodeSequence", - }, - "(0040,000B)": { - tag: "(0040,000B)", - vr: "SQ", - vm: "1", - name: "ScheduledPerformingPhysicianIdentificationSequence", - }, - "(0040,0010)": { - tag: "(0040,0010)", - vr: "SH", - vm: "1-n", - name: "ScheduledStationName", - }, - "(0040,0011)": { - tag: "(0040,0011)", - vr: "SH", - vm: "1", - name: "ScheduledProcedureStepLocation", - }, - "(0040,0012)": { - tag: "(0040,0012)", - vr: "LO", - vm: "1", - name: "PreMedication", - }, - "(0040,0020)": { - tag: "(0040,0020)", - vr: "CS", - vm: "1", - name: "ScheduledProcedureStepStatus", - }, - "(0040,0026)": { - tag: "(0040,0026)", - vr: "SQ", - vm: "1", - name: "OrderPlacerIdentifierSequence", - }, - "(0040,0027)": { - tag: "(0040,0027)", - vr: "SQ", - vm: "1", - name: "OrderFillerIdentifierSequence", - }, - "(0040,0031)": { - tag: "(0040,0031)", - vr: "UT", - vm: "1", - name: "LocalNamespaceEntityID", - }, - "(0040,0032)": { - tag: "(0040,0032)", - vr: "UT", - vm: "1", - name: "UniversalEntityID", - }, - "(0040,0033)": { - tag: "(0040,0033)", - vr: "CS", - vm: "1", - name: "UniversalEntityIDType", - }, - "(0040,0035)": { - tag: "(0040,0035)", - vr: "CS", - vm: "1", - name: "IdentifierTypeCode", - }, - "(0040,0036)": { - tag: "(0040,0036)", - vr: "SQ", - vm: "1", - name: "AssigningFacilitySequence", - }, - "(0040,0039)": { - tag: "(0040,0039)", - vr: "SQ", - vm: "1", - name: "AssigningJurisdictionCodeSequence", - }, - "(0040,003A)": { - tag: "(0040,003A)", - vr: "SQ", - vm: "1", - name: "AssigningAgencyOrDepartmentCodeSequence", - }, - "(0040,0100)": { - tag: "(0040,0100)", - vr: "SQ", - vm: "1", - name: "ScheduledProcedureStepSequence", - }, - "(0040,0220)": { - tag: "(0040,0220)", - vr: "SQ", - vm: "1", - name: "ReferencedNonImageCompositeSOPInstanceSequence", - }, - "(0040,0241)": { - tag: "(0040,0241)", - vr: "AE", - vm: "1", - name: "PerformedStationAETitle", - }, - "(0040,0242)": { - tag: "(0040,0242)", - vr: "SH", - vm: "1", - name: "PerformedStationName", - }, - "(0040,0243)": { - tag: "(0040,0243)", - vr: "SH", - vm: "1", - name: "PerformedLocation", - }, - "(0040,0244)": { - tag: "(0040,0244)", - vr: "DA", - vm: "1", - name: "PerformedProcedureStepStartDate", - }, - "(0040,0245)": { - tag: "(0040,0245)", - vr: "TM", - vm: "1", - name: "PerformedProcedureStepStartTime", - }, - "(0040,0250)": { - tag: "(0040,0250)", - vr: "DA", - vm: "1", - name: "PerformedProcedureStepEndDate", - }, - "(0040,0251)": { - tag: "(0040,0251)", - vr: "TM", - vm: "1", - name: "PerformedProcedureStepEndTime", - }, - "(0040,0252)": { - tag: "(0040,0252)", - vr: "CS", - vm: "1", - name: "PerformedProcedureStepStatus", - }, - "(0040,0253)": { - tag: "(0040,0253)", - vr: "SH", - vm: "1", - name: "PerformedProcedureStepID", - }, - "(0040,0254)": { - tag: "(0040,0254)", - vr: "LO", - vm: "1", - name: "PerformedProcedureStepDescription", - }, - "(0040,0255)": { - tag: "(0040,0255)", - vr: "LO", - vm: "1", - name: "PerformedProcedureTypeDescription", - }, - "(0040,0260)": { - tag: "(0040,0260)", - vr: "SQ", - vm: "1", - name: "PerformedProtocolCodeSequence", - }, - "(0040,0261)": { - tag: "(0040,0261)", - vr: "CS", - vm: "1", - name: "PerformedProtocolType", - }, - "(0040,0270)": { - tag: "(0040,0270)", - vr: "SQ", - vm: "1", - name: "ScheduledStepAttributesSequence", - }, - "(0040,0275)": { - tag: "(0040,0275)", - vr: "SQ", - vm: "1", - name: "RequestAttributesSequence", - }, - "(0040,0280)": { - tag: "(0040,0280)", - vr: "ST", - vm: "1", - name: "CommentsOnThePerformedProcedureStep", - }, - "(0040,0281)": { - tag: "(0040,0281)", - vr: "SQ", - vm: "1", - name: "PerformedProcedureStepDiscontinuationReasonCodeSequence", - }, - "(0040,0293)": { - tag: "(0040,0293)", - vr: "SQ", - vm: "1", - name: "QuantitySequence", - }, - "(0040,0294)": { tag: "(0040,0294)", vr: "DS", vm: "1", name: "Quantity" }, - "(0040,0295)": { - tag: "(0040,0295)", - vr: "SQ", - vm: "1", - name: "MeasuringUnitsSequence", - }, - "(0040,0296)": { - tag: "(0040,0296)", - vr: "SQ", - vm: "1", - name: "BillingItemSequence", - }, - "(0040,0300)": { - tag: "(0040,0300)", - vr: "US", - vm: "1", - name: "TotalTimeOfFluoroscopy", - }, - "(0040,0301)": { - tag: "(0040,0301)", - vr: "US", - vm: "1", - name: "TotalNumberOfExposures", - }, - "(0040,0302)": { - tag: "(0040,0302)", - vr: "US", - vm: "1", - name: "EntranceDose", - }, - "(0040,0303)": { - tag: "(0040,0303)", - vr: "US", - vm: "1-2", - name: "ExposedArea", - }, - "(0040,0306)": { - tag: "(0040,0306)", - vr: "DS", - vm: "1", - name: "DistanceSourceToEntrance", - }, - "(0040,0307)": { - tag: "(0040,0307)", - vr: "DS", - vm: "1", - name: "DistanceSourceToSupport", - }, - "(0040,030E)": { - tag: "(0040,030E)", - vr: "SQ", - vm: "1", - name: "ExposureDoseSequence", - }, - "(0040,0310)": { - tag: "(0040,0310)", - vr: "ST", - vm: "1", - name: "CommentsOnRadiationDose", - }, - "(0040,0312)": { tag: "(0040,0312)", vr: "DS", vm: "1", name: "XRayOutput" }, - "(0040,0314)": { - tag: "(0040,0314)", - vr: "DS", - vm: "1", - name: "HalfValueLayer", - }, - "(0040,0316)": { tag: "(0040,0316)", vr: "DS", vm: "1", name: "OrganDose" }, - "(0040,0318)": { - tag: "(0040,0318)", - vr: "CS", - vm: "1", - name: "OrganExposed", - }, - "(0040,0320)": { - tag: "(0040,0320)", - vr: "SQ", - vm: "1", - name: "BillingProcedureStepSequence", - }, - "(0040,0321)": { - tag: "(0040,0321)", - vr: "SQ", - vm: "1", - name: "FilmConsumptionSequence", - }, - "(0040,0324)": { - tag: "(0040,0324)", - vr: "SQ", - vm: "1", - name: "BillingSuppliesAndDevicesSequence", - }, - "(0040,0330)": { - tag: "(0040,0330)", - vr: "SQ", - vm: "1", - name: "ReferencedProcedureStepSequence", - }, - "(0040,0340)": { - tag: "(0040,0340)", - vr: "SQ", - vm: "1", - name: "PerformedSeriesSequence", - }, - "(0040,0400)": { - tag: "(0040,0400)", - vr: "LT", - vm: "1", - name: "CommentsOnTheScheduledProcedureStep", - }, - "(0040,0440)": { - tag: "(0040,0440)", - vr: "SQ", - vm: "1", - name: "ProtocolContextSequence", - }, - "(0040,0441)": { - tag: "(0040,0441)", - vr: "SQ", - vm: "1", - name: "ContentItemModifierSequence", - }, - "(0040,0500)": { - tag: "(0040,0500)", - vr: "SQ", - vm: "1", - name: "ScheduledSpecimenSequence", - }, - "(0040,050A)": { - tag: "(0040,050A)", - vr: "LO", - vm: "1", - name: "SpecimenAccessionNumber", - }, - "(0040,0512)": { - tag: "(0040,0512)", - vr: "LO", - vm: "1", - name: "ContainerIdentifier", - }, - "(0040,0513)": { - tag: "(0040,0513)", - vr: "SQ", - vm: "1", - name: "IssuerOfTheContainerIdentifierSequence", - }, - "(0040,0515)": { - tag: "(0040,0515)", - vr: "SQ", - vm: "1", - name: "AlternateContainerIdentifierSequence", - }, - "(0040,0518)": { - tag: "(0040,0518)", - vr: "SQ", - vm: "1", - name: "ContainerTypeCodeSequence", - }, - "(0040,051A)": { - tag: "(0040,051A)", - vr: "LO", - vm: "1", - name: "ContainerDescription", - }, - "(0040,0520)": { - tag: "(0040,0520)", - vr: "SQ", - vm: "1", - name: "ContainerComponentSequence", - }, - "(0040,0550)": { - tag: "(0040,0550)", - vr: "SQ", - vm: "1", - name: "SpecimenSequence", - }, - "(0040,0551)": { - tag: "(0040,0551)", - vr: "LO", - vm: "1", - name: "SpecimenIdentifier", - }, - "(0040,0552)": { - tag: "(0040,0552)", - vr: "SQ", - vm: "1", - name: "SpecimenDescriptionSequenceTrial", - }, - "(0040,0553)": { - tag: "(0040,0553)", - vr: "ST", - vm: "1", - name: "SpecimenDescriptionTrial", - }, - "(0040,0554)": { tag: "(0040,0554)", vr: "UI", vm: "1", name: "SpecimenUID" }, - "(0040,0555)": { - tag: "(0040,0555)", - vr: "SQ", - vm: "1", - name: "AcquisitionContextSequence", - }, - "(0040,0556)": { - tag: "(0040,0556)", - vr: "ST", - vm: "1", - name: "AcquisitionContextDescription", - }, - "(0040,0560)": { - tag: "(0040,0560)", - vr: "SQ", - vm: "1", - name: "SpecimenDescriptionSequence", - }, - "(0040,0562)": { - tag: "(0040,0562)", - vr: "SQ", - vm: "1", - name: "IssuerOfTheSpecimenIdentifierSequence", - }, - "(0040,059A)": { - tag: "(0040,059A)", - vr: "SQ", - vm: "1", - name: "SpecimenTypeCodeSequence", - }, - "(0040,0600)": { - tag: "(0040,0600)", - vr: "LO", - vm: "1", - name: "SpecimenShortDescription", - }, - "(0040,0602)": { - tag: "(0040,0602)", - vr: "UT", - vm: "1", - name: "SpecimenDetailedDescription", - }, - "(0040,0610)": { - tag: "(0040,0610)", - vr: "SQ", - vm: "1", - name: "SpecimenPreparationSequence", - }, - "(0040,0612)": { - tag: "(0040,0612)", - vr: "SQ", - vm: "1", - name: "SpecimenPreparationStepContentItemSequence", - }, - "(0040,0620)": { - tag: "(0040,0620)", - vr: "SQ", - vm: "1", - name: "SpecimenLocalizationContentItemSequence", - }, - "(0040,06FA)": { - tag: "(0040,06FA)", - vr: "LO", - vm: "1", - name: "SlideIdentifier", - }, - "(0040,0710)": { - tag: "(0040,0710)", - vr: "SQ", - vm: "1", - name: "WholeSlideMicroscopyImageFrameTypeSequence", - }, - "(0040,071A)": { - tag: "(0040,071A)", - vr: "SQ", - vm: "1", - name: "ImageCenterPointCoordinatesSequence", - }, - "(0040,072A)": { - tag: "(0040,072A)", - vr: "DS", - vm: "1", - name: "XOffsetInSlideCoordinateSystem", - }, - "(0040,073A)": { - tag: "(0040,073A)", - vr: "DS", - vm: "1", - name: "YOffsetInSlideCoordinateSystem", - }, - "(0040,074A)": { - tag: "(0040,074A)", - vr: "DS", - vm: "1", - name: "ZOffsetInSlideCoordinateSystem", - }, - "(0040,08D8)": { - tag: "(0040,08D8)", - vr: "SQ", - vm: "1", - name: "PixelSpacingSequence", - }, - "(0040,08DA)": { - tag: "(0040,08DA)", - vr: "SQ", - vm: "1", - name: "CoordinateSystemAxisCodeSequence", - }, - "(0040,08EA)": { - tag: "(0040,08EA)", - vr: "SQ", - vm: "1", - name: "MeasurementUnitsCodeSequence", - }, - "(0040,09F8)": { - tag: "(0040,09F8)", - vr: "SQ", - vm: "1", - name: "VitalStainCodeSequenceTrial", - }, - "(0040,1001)": { - tag: "(0040,1001)", - vr: "SH", - vm: "1", - name: "RequestedProcedureID", - }, - "(0040,1002)": { - tag: "(0040,1002)", - vr: "LO", - vm: "1", - name: "ReasonForTheRequestedProcedure", - }, - "(0040,1003)": { - tag: "(0040,1003)", - vr: "SH", - vm: "1", - name: "RequestedProcedurePriority", - }, - "(0040,1004)": { - tag: "(0040,1004)", - vr: "LO", - vm: "1", - name: "PatientTransportArrangements", - }, - "(0040,1005)": { - tag: "(0040,1005)", - vr: "LO", - vm: "1", - name: "RequestedProcedureLocation", - }, - "(0040,1006)": { - tag: "(0040,1006)", - vr: "SH", - vm: "1", - name: "PlacerOrderNumberProcedure", - }, - "(0040,1007)": { - tag: "(0040,1007)", - vr: "SH", - vm: "1", - name: "FillerOrderNumberProcedure", - }, - "(0040,1008)": { - tag: "(0040,1008)", - vr: "LO", - vm: "1", - name: "ConfidentialityCode", - }, - "(0040,1009)": { - tag: "(0040,1009)", - vr: "SH", - vm: "1", - name: "ReportingPriority", - }, - "(0040,100A)": { - tag: "(0040,100A)", - vr: "SQ", - vm: "1", - name: "ReasonForRequestedProcedureCodeSequence", - }, - "(0040,1010)": { - tag: "(0040,1010)", - vr: "PN", - vm: "1-n", - name: "NamesOfIntendedRecipientsOfResults", - }, - "(0040,1011)": { - tag: "(0040,1011)", - vr: "SQ", - vm: "1", - name: "IntendedRecipientsOfResultsIdentificationSequence", - }, - "(0040,1012)": { - tag: "(0040,1012)", - vr: "SQ", - vm: "1", - name: "ReasonForPerformedProcedureCodeSequence", - }, - "(0040,1060)": { - tag: "(0040,1060)", - vr: "LO", - vm: "1", - name: "RequestedProcedureDescriptionTrial", - }, - "(0040,1101)": { - tag: "(0040,1101)", - vr: "SQ", - vm: "1", - name: "PersonIdentificationCodeSequence", - }, - "(0040,1102)": { - tag: "(0040,1102)", - vr: "ST", - vm: "1", - name: "PersonAddress", - }, - "(0040,1103)": { - tag: "(0040,1103)", - vr: "LO", - vm: "1-n", - name: "PersonTelephoneNumbers", - }, - "(0040,1104)": { - tag: "(0040,1104)", - vr: "LT", - vm: "1", - name: "PersonTelecomInformation", - }, - "(0040,1400)": { - tag: "(0040,1400)", - vr: "LT", - vm: "1", - name: "RequestedProcedureComments", - }, - "(0040,2001)": { - tag: "(0040,2001)", - vr: "LO", - vm: "1", - name: "ReasonForTheImagingServiceRequest", - }, - "(0040,2004)": { - tag: "(0040,2004)", - vr: "DA", - vm: "1", - name: "IssueDateOfImagingServiceRequest", - }, - "(0040,2005)": { - tag: "(0040,2005)", - vr: "TM", - vm: "1", - name: "IssueTimeOfImagingServiceRequest", - }, - "(0040,2006)": { - tag: "(0040,2006)", - vr: "SH", - vm: "1", - name: "PlacerOrderNumberImagingServiceRequestRetired", - }, - "(0040,2007)": { - tag: "(0040,2007)", - vr: "SH", - vm: "1", - name: "FillerOrderNumberImagingServiceRequestRetired", - }, - "(0040,2008)": { - tag: "(0040,2008)", - vr: "PN", - vm: "1", - name: "OrderEnteredBy", - }, - "(0040,2009)": { - tag: "(0040,2009)", - vr: "SH", - vm: "1", - name: "OrderEntererLocation", - }, - "(0040,2010)": { - tag: "(0040,2010)", - vr: "SH", - vm: "1", - name: "OrderCallbackPhoneNumber", - }, - "(0040,2011)": { - tag: "(0040,2011)", - vr: "LT", - vm: "1", - name: "OrderCallbackTelecomInformation", - }, - "(0040,2016)": { - tag: "(0040,2016)", - vr: "LO", - vm: "1", - name: "PlacerOrderNumberImagingServiceRequest", - }, - "(0040,2017)": { - tag: "(0040,2017)", - vr: "LO", - vm: "1", - name: "FillerOrderNumberImagingServiceRequest", - }, - "(0040,2400)": { - tag: "(0040,2400)", - vr: "LT", - vm: "1", - name: "ImagingServiceRequestComments", - }, - "(0040,3001)": { - tag: "(0040,3001)", - vr: "LO", - vm: "1", - name: "ConfidentialityConstraintOnPatientDataDescription", - }, - "(0040,4001)": { - tag: "(0040,4001)", - vr: "CS", - vm: "1", - name: "GeneralPurposeScheduledProcedureStepStatus", - }, - "(0040,4002)": { - tag: "(0040,4002)", - vr: "CS", - vm: "1", - name: "GeneralPurposePerformedProcedureStepStatus", - }, - "(0040,4003)": { - tag: "(0040,4003)", - vr: "CS", - vm: "1", - name: "GeneralPurposeScheduledProcedureStepPriority", - }, - "(0040,4004)": { - tag: "(0040,4004)", - vr: "SQ", - vm: "1", - name: "ScheduledProcessingApplicationsCodeSequence", - }, - "(0040,4005)": { - tag: "(0040,4005)", - vr: "DT", - vm: "1", - name: "ScheduledProcedureStepStartDateTime", - }, - "(0040,4006)": { - tag: "(0040,4006)", - vr: "CS", - vm: "1", - name: "MultipleCopiesFlag", - }, - "(0040,4007)": { - tag: "(0040,4007)", - vr: "SQ", - vm: "1", - name: "PerformedProcessingApplicationsCodeSequence", - }, - "(0040,4008)": { - tag: "(0040,4008)", - vr: "DT", - vm: "1", - name: "ScheduledProcedureStepExpirationDateTime", - }, - "(0040,4009)": { - tag: "(0040,4009)", - vr: "SQ", - vm: "1", - name: "HumanPerformerCodeSequence", - }, - "(0040,4010)": { - tag: "(0040,4010)", - vr: "DT", - vm: "1", - name: "ScheduledProcedureStepModificationDateTime", - }, - "(0040,4011)": { - tag: "(0040,4011)", - vr: "DT", - vm: "1", - name: "ExpectedCompletionDateTime", - }, - "(0040,4015)": { - tag: "(0040,4015)", - vr: "SQ", - vm: "1", - name: "ResultingGeneralPurposePerformedProcedureStepsSequence", - }, - "(0040,4016)": { - tag: "(0040,4016)", - vr: "SQ", - vm: "1", - name: "ReferencedGeneralPurposeScheduledProcedureStepSequence", - }, - "(0040,4018)": { - tag: "(0040,4018)", - vr: "SQ", - vm: "1", - name: "ScheduledWorkitemCodeSequence", - }, - "(0040,4019)": { - tag: "(0040,4019)", - vr: "SQ", - vm: "1", - name: "PerformedWorkitemCodeSequence", - }, - "(0040,4020)": { - tag: "(0040,4020)", - vr: "CS", - vm: "1", - name: "InputAvailabilityFlag", - }, - "(0040,4021)": { - tag: "(0040,4021)", - vr: "SQ", - vm: "1", - name: "InputInformationSequence", - }, - "(0040,4022)": { - tag: "(0040,4022)", - vr: "SQ", - vm: "1", - name: "RelevantInformationSequence", - }, - "(0040,4023)": { - tag: "(0040,4023)", - vr: "UI", - vm: "1", - name: "ReferencedGeneralPurposeScheduledProcedureStepTransactionUID", - }, - "(0040,4025)": { - tag: "(0040,4025)", - vr: "SQ", - vm: "1", - name: "ScheduledStationNameCodeSequence", - }, - "(0040,4026)": { - tag: "(0040,4026)", - vr: "SQ", - vm: "1", - name: "ScheduledStationClassCodeSequence", - }, - "(0040,4027)": { - tag: "(0040,4027)", - vr: "SQ", - vm: "1", - name: "ScheduledStationGeographicLocationCodeSequence", - }, - "(0040,4028)": { - tag: "(0040,4028)", - vr: "SQ", - vm: "1", - name: "PerformedStationNameCodeSequence", - }, - "(0040,4029)": { - tag: "(0040,4029)", - vr: "SQ", - vm: "1", - name: "PerformedStationClassCodeSequence", - }, - "(0040,4030)": { - tag: "(0040,4030)", - vr: "SQ", - vm: "1", - name: "PerformedStationGeographicLocationCodeSequence", - }, - "(0040,4031)": { - tag: "(0040,4031)", - vr: "SQ", - vm: "1", - name: "RequestedSubsequentWorkitemCodeSequence", - }, - "(0040,4032)": { - tag: "(0040,4032)", - vr: "SQ", - vm: "1", - name: "NonDICOMOutputCodeSequence", - }, - "(0040,4033)": { - tag: "(0040,4033)", - vr: "SQ", - vm: "1", - name: "OutputInformationSequence", - }, - "(0040,4034)": { - tag: "(0040,4034)", - vr: "SQ", - vm: "1", - name: "ScheduledHumanPerformersSequence", - }, - "(0040,4035)": { - tag: "(0040,4035)", - vr: "SQ", - vm: "1", - name: "ActualHumanPerformersSequence", - }, - "(0040,4036)": { - tag: "(0040,4036)", - vr: "LO", - vm: "1", - name: "HumanPerformerOrganization", - }, - "(0040,4037)": { - tag: "(0040,4037)", - vr: "PN", - vm: "1", - name: "HumanPerformerName", - }, - "(0040,4040)": { - tag: "(0040,4040)", - vr: "CS", - vm: "1", - name: "RawDataHandling", - }, - "(0040,4041)": { - tag: "(0040,4041)", - vr: "CS", - vm: "1", - name: "InputReadinessState", - }, - "(0040,4050)": { - tag: "(0040,4050)", - vr: "DT", - vm: "1", - name: "PerformedProcedureStepStartDateTime", - }, - "(0040,4051)": { - tag: "(0040,4051)", - vr: "DT", - vm: "1", - name: "PerformedProcedureStepEndDateTime", - }, - "(0040,4052)": { - tag: "(0040,4052)", - vr: "DT", - vm: "1", - name: "ProcedureStepCancellationDateTime", - }, - "(0040,4070)": { - tag: "(0040,4070)", - vr: "SQ", - vm: "1", - name: "OutputDestinationSequence", - }, - "(0040,4071)": { - tag: "(0040,4071)", - vr: "SQ", - vm: "1", - name: "DICOMStorageSequence", - }, - "(0040,4072)": { - tag: "(0040,4072)", - vr: "SQ", - vm: "1", - name: "STOWRSStorageSequence", - }, - "(0040,4073)": { tag: "(0040,4073)", vr: "UR", vm: "1", name: "StorageURL" }, - "(0040,4074)": { - tag: "(0040,4074)", - vr: "SQ", - vm: "1", - name: "XDSStorageSequence", - }, - "(0040,8302)": { - tag: "(0040,8302)", - vr: "DS", - vm: "1", - name: "EntranceDoseInmGy", - }, - "(0040,8303)": { - tag: "(0040,8303)", - vr: "CS", - vm: "1", - name: "EntranceDoseDerivation", - }, - "(0040,9092)": { - tag: "(0040,9092)", - vr: "SQ", - vm: "1", - name: "ParametricMapFrameTypeSequence", - }, - "(0040,9094)": { - tag: "(0040,9094)", - vr: "SQ", - vm: "1", - name: "ReferencedImageRealWorldValueMappingSequence", - }, - "(0040,9096)": { - tag: "(0040,9096)", - vr: "SQ", - vm: "1", - name: "RealWorldValueMappingSequence", - }, - "(0040,9098)": { - tag: "(0040,9098)", - vr: "SQ", - vm: "1", - name: "PixelValueMappingCodeSequence", - }, - "(0040,9210)": { tag: "(0040,9210)", vr: "SH", vm: "1", name: "LUTLabel" }, - "(0040,9211)": { - tag: "(0040,9211)", - vr: "US|SS", - vm: "1", - name: "RealWorldValueLastValueMapped", - }, - "(0040,9212)": { - tag: "(0040,9212)", - vr: "FD", - vm: "1-n", - name: "RealWorldValueLUTData", - }, - "(0040,9213)": { - tag: "(0040,9213)", - vr: "FD", - vm: "1", - name: "DoubleFloatRealWorldValueLastValueMapped", - }, - "(0040,9214)": { - tag: "(0040,9214)", - vr: "FD", - vm: "1", - name: "DoubleFloatRealWorldValueFirstValueMapped", - }, - "(0040,9216)": { - tag: "(0040,9216)", - vr: "US|SS", - vm: "1", - name: "RealWorldValueFirstValueMapped", - }, - "(0040,9220)": { - tag: "(0040,9220)", - vr: "SQ", - vm: "1", - name: "QuantityDefinitionSequence", - }, - "(0040,9224)": { - tag: "(0040,9224)", - vr: "FD", - vm: "1", - name: "RealWorldValueIntercept", - }, - "(0040,9225)": { - tag: "(0040,9225)", - vr: "FD", - vm: "1", - name: "RealWorldValueSlope", - }, - "(0040,A007)": { - tag: "(0040,A007)", - vr: "CS", - vm: "1", - name: "FindingsFlagTrial", - }, - "(0040,A010)": { - tag: "(0040,A010)", - vr: "CS", - vm: "1", - name: "RelationshipType", - }, - "(0040,A020)": { - tag: "(0040,A020)", - vr: "SQ", - vm: "1", - name: "FindingsSequenceTrial", - }, - "(0040,A021)": { - tag: "(0040,A021)", - vr: "UI", - vm: "1", - name: "FindingsGroupUIDTrial", - }, - "(0040,A022)": { - tag: "(0040,A022)", - vr: "UI", - vm: "1", - name: "ReferencedFindingsGroupUIDTrial", - }, - "(0040,A023)": { - tag: "(0040,A023)", - vr: "DA", - vm: "1", - name: "FindingsGroupRecordingDateTrial", - }, - "(0040,A024)": { - tag: "(0040,A024)", - vr: "TM", - vm: "1", - name: "FindingsGroupRecordingTimeTrial", - }, - "(0040,A026)": { - tag: "(0040,A026)", - vr: "SQ", - vm: "1", - name: "FindingsSourceCategoryCodeSequenceTrial", - }, - "(0040,A027)": { - tag: "(0040,A027)", - vr: "LO", - vm: "1", - name: "VerifyingOrganization", - }, - "(0040,A028)": { - tag: "(0040,A028)", - vr: "SQ", - vm: "1", - name: "DocumentingOrganizationIdentifierCodeSequenceTrial", - }, - "(0040,A030)": { - tag: "(0040,A030)", - vr: "DT", - vm: "1", - name: "VerificationDateTime", - }, - "(0040,A032)": { - tag: "(0040,A032)", - vr: "DT", - vm: "1", - name: "ObservationDateTime", - }, - "(0040,A033)": { - tag: "(0040,A033)", - vr: "DT", - vm: "1", - name: "ObservationStartDateTime", - }, - "(0040,A040)": { tag: "(0040,A040)", vr: "CS", vm: "1", name: "ValueType" }, - "(0040,A043)": { - tag: "(0040,A043)", - vr: "SQ", - vm: "1", - name: "ConceptNameCodeSequence", - }, - "(0040,A047)": { - tag: "(0040,A047)", - vr: "LO", - vm: "1", - name: "MeasurementPrecisionDescriptionTrial", - }, - "(0040,A050)": { - tag: "(0040,A050)", - vr: "CS", - vm: "1", - name: "ContinuityOfContent", - }, - "(0040,A057)": { - tag: "(0040,A057)", - vr: "CS", - vm: "1-n", - name: "UrgencyOrPriorityAlertsTrial", - }, - "(0040,A060)": { - tag: "(0040,A060)", - vr: "LO", - vm: "1", - name: "SequencingIndicatorTrial", - }, - "(0040,A066)": { - tag: "(0040,A066)", - vr: "SQ", - vm: "1", - name: "DocumentIdentifierCodeSequenceTrial", - }, - "(0040,A067)": { - tag: "(0040,A067)", - vr: "PN", - vm: "1", - name: "DocumentAuthorTrial", - }, - "(0040,A068)": { - tag: "(0040,A068)", - vr: "SQ", - vm: "1", - name: "DocumentAuthorIdentifierCodeSequenceTrial", - }, - "(0040,A070)": { - tag: "(0040,A070)", - vr: "SQ", - vm: "1", - name: "IdentifierCodeSequenceTrial", - }, - "(0040,A073)": { - tag: "(0040,A073)", - vr: "SQ", - vm: "1", - name: "VerifyingObserverSequence", - }, - "(0040,A074)": { - tag: "(0040,A074)", - vr: "OB", - vm: "1", - name: "ObjectBinaryIdentifierTrial", - }, - "(0040,A075)": { - tag: "(0040,A075)", - vr: "PN", - vm: "1", - name: "VerifyingObserverName", - }, - "(0040,A076)": { - tag: "(0040,A076)", - vr: "SQ", - vm: "1", - name: "DocumentingObserverIdentifierCodeSequenceTrial", - }, - "(0040,A078)": { - tag: "(0040,A078)", - vr: "SQ", - vm: "1", - name: "AuthorObserverSequence", - }, - "(0040,A07A)": { - tag: "(0040,A07A)", - vr: "SQ", - vm: "1", - name: "ParticipantSequence", - }, - "(0040,A07C)": { - tag: "(0040,A07C)", - vr: "SQ", - vm: "1", - name: "CustodialOrganizationSequence", - }, - "(0040,A080)": { - tag: "(0040,A080)", - vr: "CS", - vm: "1", - name: "ParticipationType", - }, - "(0040,A082)": { - tag: "(0040,A082)", - vr: "DT", - vm: "1", - name: "ParticipationDateTime", - }, - "(0040,A084)": { - tag: "(0040,A084)", - vr: "CS", - vm: "1", - name: "ObserverType", - }, - "(0040,A085)": { - tag: "(0040,A085)", - vr: "SQ", - vm: "1", - name: "ProcedureIdentifierCodeSequenceTrial", - }, - "(0040,A088)": { - tag: "(0040,A088)", - vr: "SQ", - vm: "1", - name: "VerifyingObserverIdentificationCodeSequence", - }, - "(0040,A089)": { - tag: "(0040,A089)", - vr: "OB", - vm: "1", - name: "ObjectDirectoryBinaryIdentifierTrial", - }, - "(0040,A090)": { - tag: "(0040,A090)", - vr: "SQ", - vm: "1", - name: "EquivalentCDADocumentSequence", - }, - "(0040,A0B0)": { - tag: "(0040,A0B0)", - vr: "US", - vm: "2-2n", - name: "ReferencedWaveformChannels", - }, - "(0040,A110)": { - tag: "(0040,A110)", - vr: "DA", - vm: "1", - name: "DateOfDocumentOrVerbalTransactionTrial", - }, - "(0040,A112)": { - tag: "(0040,A112)", - vr: "TM", - vm: "1", - name: "TimeOfDocumentCreationOrVerbalTransactionTrial", - }, - "(0040,A120)": { tag: "(0040,A120)", vr: "DT", vm: "1", name: "DateTime" }, - "(0040,A121)": { tag: "(0040,A121)", vr: "DA", vm: "1", name: "Date" }, - "(0040,A122)": { tag: "(0040,A122)", vr: "TM", vm: "1", name: "Time" }, - "(0040,A123)": { tag: "(0040,A123)", vr: "PN", vm: "1", name: "PersonName" }, - "(0040,A124)": { tag: "(0040,A124)", vr: "UI", vm: "1", name: "UID" }, - "(0040,A125)": { - tag: "(0040,A125)", - vr: "CS", - vm: "2", - name: "ReportStatusIDTrial", - }, - "(0040,A130)": { - tag: "(0040,A130)", - vr: "CS", - vm: "1", - name: "TemporalRangeType", - }, - "(0040,A132)": { - tag: "(0040,A132)", - vr: "UL", - vm: "1-n", - name: "ReferencedSamplePositions", - }, - "(0040,A136)": { - tag: "(0040,A136)", - vr: "US", - vm: "1-n", - name: "ReferencedFrameNumbers", - }, - "(0040,A138)": { - tag: "(0040,A138)", - vr: "DS", - vm: "1-n", - name: "ReferencedTimeOffsets", - }, - "(0040,A13A)": { - tag: "(0040,A13A)", - vr: "DT", - vm: "1-n", - name: "ReferencedDateTime", - }, - "(0040,A160)": { tag: "(0040,A160)", vr: "UT", vm: "1", name: "TextValue" }, - "(0040,A161)": { - tag: "(0040,A161)", - vr: "FD", - vm: "1-n", - name: "FloatingPointValue", - }, - "(0040,A162)": { - tag: "(0040,A162)", - vr: "SL", - vm: "1-n", - name: "RationalNumeratorValue", - }, - "(0040,A163)": { - tag: "(0040,A163)", - vr: "UL", - vm: "1-n", - name: "RationalDenominatorValue", - }, - "(0040,A167)": { - tag: "(0040,A167)", - vr: "SQ", - vm: "1", - name: "ObservationCategoryCodeSequenceTrial", - }, - "(0040,A168)": { - tag: "(0040,A168)", - vr: "SQ", - vm: "1", - name: "ConceptCodeSequence", - }, - "(0040,A16A)": { - tag: "(0040,A16A)", - vr: "ST", - vm: "1", - name: "BibliographicCitationTrial", - }, - "(0040,A170)": { - tag: "(0040,A170)", - vr: "SQ", - vm: "1", - name: "PurposeOfReferenceCodeSequence", - }, - "(0040,A171)": { - tag: "(0040,A171)", - vr: "UI", - vm: "1", - name: "ObservationUID", - }, - "(0040,A172)": { - tag: "(0040,A172)", - vr: "UI", - vm: "1", - name: "ReferencedObservationUIDTrial", - }, - "(0040,A173)": { - tag: "(0040,A173)", - vr: "CS", - vm: "1", - name: "ReferencedObservationClassTrial", - }, - "(0040,A174)": { - tag: "(0040,A174)", - vr: "CS", - vm: "1", - name: "ReferencedObjectObservationClassTrial", - }, - "(0040,A180)": { - tag: "(0040,A180)", - vr: "US", - vm: "1", - name: "AnnotationGroupNumber", - }, - "(0040,A192)": { - tag: "(0040,A192)", - vr: "DA", - vm: "1", - name: "ObservationDateTrial", - }, - "(0040,A193)": { - tag: "(0040,A193)", - vr: "TM", - vm: "1", - name: "ObservationTimeTrial", - }, - "(0040,A194)": { - tag: "(0040,A194)", - vr: "CS", - vm: "1", - name: "MeasurementAutomationTrial", - }, - "(0040,A195)": { - tag: "(0040,A195)", - vr: "SQ", - vm: "1", - name: "ModifierCodeSequence", - }, - "(0040,A224)": { - tag: "(0040,A224)", - vr: "ST", - vm: "1", - name: "IdentificationDescriptionTrial", - }, - "(0040,A290)": { - tag: "(0040,A290)", - vr: "CS", - vm: "1", - name: "CoordinatesSetGeometricTypeTrial", - }, - "(0040,A296)": { - tag: "(0040,A296)", - vr: "SQ", - vm: "1", - name: "AlgorithmCodeSequenceTrial", - }, - "(0040,A297)": { - tag: "(0040,A297)", - vr: "ST", - vm: "1", - name: "AlgorithmDescriptionTrial", - }, - "(0040,A29A)": { - tag: "(0040,A29A)", - vr: "SL", - vm: "2-2n", - name: "PixelCoordinatesSetTrial", - }, - "(0040,A300)": { - tag: "(0040,A300)", - vr: "SQ", - vm: "1", - name: "MeasuredValueSequence", - }, - "(0040,A301)": { - tag: "(0040,A301)", - vr: "SQ", - vm: "1", - name: "NumericValueQualifierCodeSequence", - }, - "(0040,A307)": { - tag: "(0040,A307)", - vr: "PN", - vm: "1", - name: "CurrentObserverTrial", - }, - "(0040,A30A)": { - tag: "(0040,A30A)", - vr: "DS", - vm: "1-n", - name: "NumericValue", - }, - "(0040,A313)": { - tag: "(0040,A313)", - vr: "SQ", - vm: "1", - name: "ReferencedAccessionSequenceTrial", - }, - "(0040,A33A)": { - tag: "(0040,A33A)", - vr: "ST", - vm: "1", - name: "ReportStatusCommentTrial", - }, - "(0040,A340)": { - tag: "(0040,A340)", - vr: "SQ", - vm: "1", - name: "ProcedureContextSequenceTrial", - }, - "(0040,A352)": { - tag: "(0040,A352)", - vr: "PN", - vm: "1", - name: "VerbalSourceTrial", - }, - "(0040,A353)": { - tag: "(0040,A353)", - vr: "ST", - vm: "1", - name: "AddressTrial", - }, - "(0040,A354)": { - tag: "(0040,A354)", - vr: "LO", - vm: "1", - name: "TelephoneNumberTrial", - }, - "(0040,A358)": { - tag: "(0040,A358)", - vr: "SQ", - vm: "1", - name: "VerbalSourceIdentifierCodeSequenceTrial", - }, - "(0040,A360)": { - tag: "(0040,A360)", - vr: "SQ", - vm: "1", - name: "PredecessorDocumentsSequence", - }, - "(0040,A370)": { - tag: "(0040,A370)", - vr: "SQ", - vm: "1", - name: "ReferencedRequestSequence", - }, - "(0040,A372)": { - tag: "(0040,A372)", - vr: "SQ", - vm: "1", - name: "PerformedProcedureCodeSequence", - }, - "(0040,A375)": { - tag: "(0040,A375)", - vr: "SQ", - vm: "1", - name: "CurrentRequestedProcedureEvidenceSequence", - }, - "(0040,A380)": { - tag: "(0040,A380)", - vr: "SQ", - vm: "1", - name: "ReportDetailSequenceTrial", - }, - "(0040,A385)": { - tag: "(0040,A385)", - vr: "SQ", - vm: "1", - name: "PertinentOtherEvidenceSequence", - }, - "(0040,A390)": { - tag: "(0040,A390)", - vr: "SQ", - vm: "1", - name: "HL7StructuredDocumentReferenceSequence", - }, - "(0040,A402)": { - tag: "(0040,A402)", - vr: "UI", - vm: "1", - name: "ObservationSubjectUIDTrial", - }, - "(0040,A403)": { - tag: "(0040,A403)", - vr: "CS", - vm: "1", - name: "ObservationSubjectClassTrial", - }, - "(0040,A404)": { - tag: "(0040,A404)", - vr: "SQ", - vm: "1", - name: "ObservationSubjectTypeCodeSequenceTrial", - }, - "(0040,A491)": { - tag: "(0040,A491)", - vr: "CS", - vm: "1", - name: "CompletionFlag", - }, - "(0040,A492)": { - tag: "(0040,A492)", - vr: "LO", - vm: "1", - name: "CompletionFlagDescription", - }, - "(0040,A493)": { - tag: "(0040,A493)", - vr: "CS", - vm: "1", - name: "VerificationFlag", - }, - "(0040,A494)": { - tag: "(0040,A494)", - vr: "CS", - vm: "1", - name: "ArchiveRequested", - }, - "(0040,A496)": { - tag: "(0040,A496)", - vr: "CS", - vm: "1", - name: "PreliminaryFlag", - }, - "(0040,A504)": { - tag: "(0040,A504)", - vr: "SQ", - vm: "1", - name: "ContentTemplateSequence", - }, - "(0040,A525)": { - tag: "(0040,A525)", - vr: "SQ", - vm: "1", - name: "IdenticalDocumentsSequence", - }, - "(0040,A600)": { - tag: "(0040,A600)", - vr: "CS", - vm: "1", - name: "ObservationSubjectContextFlagTrial", - }, - "(0040,A601)": { - tag: "(0040,A601)", - vr: "CS", - vm: "1", - name: "ObserverContextFlagTrial", - }, - "(0040,A603)": { - tag: "(0040,A603)", - vr: "CS", - vm: "1", - name: "ProcedureContextFlagTrial", - }, - "(0040,A730)": { - tag: "(0040,A730)", - vr: "SQ", - vm: "1", - name: "ContentSequence", - }, - "(0040,A731)": { - tag: "(0040,A731)", - vr: "SQ", - vm: "1", - name: "RelationshipSequenceTrial", - }, - "(0040,A732)": { - tag: "(0040,A732)", - vr: "SQ", - vm: "1", - name: "RelationshipTypeCodeSequenceTrial", - }, - "(0040,A744)": { - tag: "(0040,A744)", - vr: "SQ", - vm: "1", - name: "LanguageCodeSequenceTrial", - }, - "(0040,A801)": { - tag: "(0040,A801)", - vr: "SQ", - vm: "1", - name: "TabulatedValuesSequence", - }, - "(0040,A802)": { - tag: "(0040,A802)", - vr: "UL", - vm: "1", - name: "NumberOfTableRows", - }, - "(0040,A803)": { - tag: "(0040,A803)", - vr: "UL", - vm: "1", - name: "NumberOfTableColumns", - }, - "(0040,A804)": { - tag: "(0040,A804)", - vr: "UL", - vm: "1", - name: "TableRowNumber", - }, - "(0040,A805)": { - tag: "(0040,A805)", - vr: "UL", - vm: "1", - name: "TableColumnNumber", - }, - "(0040,A806)": { - tag: "(0040,A806)", - vr: "SQ", - vm: "1", - name: "TableRowDefinitionSequence", - }, - "(0040,A807)": { - tag: "(0040,A807)", - vr: "SQ", - vm: "1", - name: "TableColumnDefinitionSequence", - }, - "(0040,A808)": { - tag: "(0040,A808)", - vr: "SQ", - vm: "1", - name: "CellValuesSequence", - }, - "(0040,A992)": { - tag: "(0040,A992)", - vr: "ST", - vm: "1", - name: "UniformResourceLocatorTrial", - }, - "(0040,B020)": { - tag: "(0040,B020)", - vr: "SQ", - vm: "1", - name: "WaveformAnnotationSequence", - }, - "(0040,DB00)": { - tag: "(0040,DB00)", - vr: "CS", - vm: "1", - name: "TemplateIdentifier", - }, - "(0040,DB06)": { - tag: "(0040,DB06)", - vr: "DT", - vm: "1", - name: "TemplateVersion", - }, - "(0040,DB07)": { - tag: "(0040,DB07)", - vr: "DT", - vm: "1", - name: "TemplateLocalVersion", - }, - "(0040,DB0B)": { - tag: "(0040,DB0B)", - vr: "CS", - vm: "1", - name: "TemplateExtensionFlag", - }, - "(0040,DB0C)": { - tag: "(0040,DB0C)", - vr: "UI", - vm: "1", - name: "TemplateExtensionOrganizationUID", - }, - "(0040,DB0D)": { - tag: "(0040,DB0D)", - vr: "UI", - vm: "1", - name: "TemplateExtensionCreatorUID", - }, - "(0040,DB73)": { - tag: "(0040,DB73)", - vr: "UL", - vm: "1-n", - name: "ReferencedContentItemIdentifier", - }, - "(0040,E001)": { - tag: "(0040,E001)", - vr: "ST", - vm: "1", - name: "HL7InstanceIdentifier", - }, - "(0040,E004)": { - tag: "(0040,E004)", - vr: "DT", - vm: "1", - name: "HL7DocumentEffectiveTime", - }, - "(0040,E006)": { - tag: "(0040,E006)", - vr: "SQ", - vm: "1", - name: "HL7DocumentTypeCodeSequence", - }, - "(0040,E008)": { - tag: "(0040,E008)", - vr: "SQ", - vm: "1", - name: "DocumentClassCodeSequence", - }, - "(0040,E010)": { tag: "(0040,E010)", vr: "UR", vm: "1", name: "RetrieveURI" }, - "(0040,E011)": { - tag: "(0040,E011)", - vr: "UI", - vm: "1", - name: "RetrieveLocationUID", - }, - "(0040,E020)": { - tag: "(0040,E020)", - vr: "CS", - vm: "1", - name: "TypeOfInstances", - }, - "(0040,E021)": { - tag: "(0040,E021)", - vr: "SQ", - vm: "1", - name: "DICOMRetrievalSequence", - }, - "(0040,E022)": { - tag: "(0040,E022)", - vr: "SQ", - vm: "1", - name: "DICOMMediaRetrievalSequence", - }, - "(0040,E023)": { - tag: "(0040,E023)", - vr: "SQ", - vm: "1", - name: "WADORetrievalSequence", - }, - "(0040,E024)": { - tag: "(0040,E024)", - vr: "SQ", - vm: "1", - name: "XDSRetrievalSequence", - }, - "(0040,E025)": { - tag: "(0040,E025)", - vr: "SQ", - vm: "1", - name: "WADORSRetrievalSequence", - }, - "(0040,E030)": { - tag: "(0040,E030)", - vr: "UI", - vm: "1", - name: "RepositoryUniqueID", - }, - "(0040,E031)": { - tag: "(0040,E031)", - vr: "UI", - vm: "1", - name: "HomeCommunityID", - }, - "(0042,0010)": { - tag: "(0042,0010)", - vr: "ST", - vm: "1", - name: "DocumentTitle", - }, - "(0042,0011)": { - tag: "(0042,0011)", - vr: "OB", - vm: "1", - name: "EncapsulatedDocument", - }, - "(0042,0012)": { - tag: "(0042,0012)", - vr: "LO", - vm: "1", - name: "MIMETypeOfEncapsulatedDocument", - }, - "(0042,0013)": { - tag: "(0042,0013)", - vr: "SQ", - vm: "1", - name: "SourceInstanceSequence", - }, - "(0042,0014)": { - tag: "(0042,0014)", - vr: "LO", - vm: "1-n", - name: "ListOfMIMETypes", - }, - "(0042,0015)": { - tag: "(0042,0015)", - vr: "UL", - vm: "1", - name: "EncapsulatedDocumentLength", - }, - "(0044,0001)": { - tag: "(0044,0001)", - vr: "ST", - vm: "1", - name: "ProductPackageIdentifier", - }, - "(0044,0002)": { - tag: "(0044,0002)", - vr: "CS", - vm: "1", - name: "SubstanceAdministrationApproval", - }, - "(0044,0003)": { - tag: "(0044,0003)", - vr: "LT", - vm: "1", - name: "ApprovalStatusFurtherDescription", - }, - "(0044,0004)": { - tag: "(0044,0004)", - vr: "DT", - vm: "1", - name: "ApprovalStatusDateTime", - }, - "(0044,0007)": { - tag: "(0044,0007)", - vr: "SQ", - vm: "1", - name: "ProductTypeCodeSequence", - }, - "(0044,0008)": { - tag: "(0044,0008)", - vr: "LO", - vm: "1-n", - name: "ProductName", - }, - "(0044,0009)": { - tag: "(0044,0009)", - vr: "LT", - vm: "1", - name: "ProductDescription", - }, - "(0044,000A)": { - tag: "(0044,000A)", - vr: "LO", - vm: "1", - name: "ProductLotIdentifier", - }, - "(0044,000B)": { - tag: "(0044,000B)", - vr: "DT", - vm: "1", - name: "ProductExpirationDateTime", - }, - "(0044,0010)": { - tag: "(0044,0010)", - vr: "DT", - vm: "1", - name: "SubstanceAdministrationDateTime", - }, - "(0044,0011)": { - tag: "(0044,0011)", - vr: "LO", - vm: "1", - name: "SubstanceAdministrationNotes", - }, - "(0044,0012)": { - tag: "(0044,0012)", - vr: "LO", - vm: "1", - name: "SubstanceAdministrationDeviceID", - }, - "(0044,0013)": { - tag: "(0044,0013)", - vr: "SQ", - vm: "1", - name: "ProductParameterSequence", - }, - "(0044,0019)": { - tag: "(0044,0019)", - vr: "SQ", - vm: "1", - name: "SubstanceAdministrationParameterSequence", - }, - "(0044,0100)": { - tag: "(0044,0100)", - vr: "SQ", - vm: "1", - name: "ApprovalSequence", - }, - "(0044,0101)": { - tag: "(0044,0101)", - vr: "SQ", - vm: "1", - name: "AssertionCodeSequence", - }, - "(0044,0102)": { - tag: "(0044,0102)", - vr: "UI", - vm: "1", - name: "AssertionUID", - }, - "(0044,0103)": { - tag: "(0044,0103)", - vr: "SQ", - vm: "1", - name: "AsserterIdentificationSequence", - }, - "(0044,0104)": { - tag: "(0044,0104)", - vr: "DT", - vm: "1", - name: "AssertionDateTime", - }, - "(0044,0105)": { - tag: "(0044,0105)", - vr: "DT", - vm: "1", - name: "AssertionExpirationDateTime", - }, - "(0044,0106)": { - tag: "(0044,0106)", - vr: "UT", - vm: "1", - name: "AssertionComments", - }, - "(0044,0107)": { - tag: "(0044,0107)", - vr: "SQ", - vm: "1", - name: "RelatedAssertionSequence", - }, - "(0044,0108)": { - tag: "(0044,0108)", - vr: "UI", - vm: "1", - name: "ReferencedAssertionUID", - }, - "(0044,0109)": { - tag: "(0044,0109)", - vr: "SQ", - vm: "1", - name: "ApprovalSubjectSequence", - }, - "(0044,010A)": { - tag: "(0044,010A)", - vr: "SQ", - vm: "1", - name: "OrganizationalRoleCodeSequence", - }, - "(0046,0012)": { - tag: "(0046,0012)", - vr: "LO", - vm: "1", - name: "LensDescription", - }, - "(0046,0014)": { - tag: "(0046,0014)", - vr: "SQ", - vm: "1", - name: "RightLensSequence", - }, - "(0046,0015)": { - tag: "(0046,0015)", - vr: "SQ", - vm: "1", - name: "LeftLensSequence", - }, - "(0046,0016)": { - tag: "(0046,0016)", - vr: "SQ", - vm: "1", - name: "UnspecifiedLateralityLensSequence", - }, - "(0046,0018)": { - tag: "(0046,0018)", - vr: "SQ", - vm: "1", - name: "CylinderSequence", - }, - "(0046,0028)": { - tag: "(0046,0028)", - vr: "SQ", - vm: "1", - name: "PrismSequence", - }, - "(0046,0030)": { - tag: "(0046,0030)", - vr: "FD", - vm: "1", - name: "HorizontalPrismPower", - }, - "(0046,0032)": { - tag: "(0046,0032)", - vr: "CS", - vm: "1", - name: "HorizontalPrismBase", - }, - "(0046,0034)": { - tag: "(0046,0034)", - vr: "FD", - vm: "1", - name: "VerticalPrismPower", - }, - "(0046,0036)": { - tag: "(0046,0036)", - vr: "CS", - vm: "1", - name: "VerticalPrismBase", - }, - "(0046,0038)": { - tag: "(0046,0038)", - vr: "CS", - vm: "1", - name: "LensSegmentType", - }, - "(0046,0040)": { - tag: "(0046,0040)", - vr: "FD", - vm: "1", - name: "OpticalTransmittance", - }, - "(0046,0042)": { - tag: "(0046,0042)", - vr: "FD", - vm: "1", - name: "ChannelWidth", - }, - "(0046,0044)": { tag: "(0046,0044)", vr: "FD", vm: "1", name: "PupilSize" }, - "(0046,0046)": { tag: "(0046,0046)", vr: "FD", vm: "1", name: "CornealSize" }, - "(0046,0047)": { - tag: "(0046,0047)", - vr: "SQ", - vm: "1", - name: "CornealSizeSequence", - }, - "(0046,0050)": { - tag: "(0046,0050)", - vr: "SQ", - vm: "1", - name: "AutorefractionRightEyeSequence", - }, - "(0046,0052)": { - tag: "(0046,0052)", - vr: "SQ", - vm: "1", - name: "AutorefractionLeftEyeSequence", - }, - "(0046,0060)": { - tag: "(0046,0060)", - vr: "FD", - vm: "1", - name: "DistancePupillaryDistance", - }, - "(0046,0062)": { - tag: "(0046,0062)", - vr: "FD", - vm: "1", - name: "NearPupillaryDistance", - }, - "(0046,0063)": { - tag: "(0046,0063)", - vr: "FD", - vm: "1", - name: "IntermediatePupillaryDistance", - }, - "(0046,0064)": { - tag: "(0046,0064)", - vr: "FD", - vm: "1", - name: "OtherPupillaryDistance", - }, - "(0046,0070)": { - tag: "(0046,0070)", - vr: "SQ", - vm: "1", - name: "KeratometryRightEyeSequence", - }, - "(0046,0071)": { - tag: "(0046,0071)", - vr: "SQ", - vm: "1", - name: "KeratometryLeftEyeSequence", - }, - "(0046,0074)": { - tag: "(0046,0074)", - vr: "SQ", - vm: "1", - name: "SteepKeratometricAxisSequence", - }, - "(0046,0075)": { - tag: "(0046,0075)", - vr: "FD", - vm: "1", - name: "RadiusOfCurvature", - }, - "(0046,0076)": { - tag: "(0046,0076)", - vr: "FD", - vm: "1", - name: "KeratometricPower", - }, - "(0046,0077)": { - tag: "(0046,0077)", - vr: "FD", - vm: "1", - name: "KeratometricAxis", - }, - "(0046,0080)": { - tag: "(0046,0080)", - vr: "SQ", - vm: "1", - name: "FlatKeratometricAxisSequence", - }, - "(0046,0092)": { - tag: "(0046,0092)", - vr: "CS", - vm: "1", - name: "BackgroundColor", - }, - "(0046,0094)": { tag: "(0046,0094)", vr: "CS", vm: "1", name: "Optotype" }, - "(0046,0095)": { - tag: "(0046,0095)", - vr: "CS", - vm: "1", - name: "OptotypePresentation", - }, - "(0046,0097)": { - tag: "(0046,0097)", - vr: "SQ", - vm: "1", - name: "SubjectiveRefractionRightEyeSequence", - }, - "(0046,0098)": { - tag: "(0046,0098)", - vr: "SQ", - vm: "1", - name: "SubjectiveRefractionLeftEyeSequence", - }, - "(0046,0100)": { - tag: "(0046,0100)", - vr: "SQ", - vm: "1", - name: "AddNearSequence", - }, - "(0046,0101)": { - tag: "(0046,0101)", - vr: "SQ", - vm: "1", - name: "AddIntermediateSequence", - }, - "(0046,0102)": { - tag: "(0046,0102)", - vr: "SQ", - vm: "1", - name: "AddOtherSequence", - }, - "(0046,0104)": { tag: "(0046,0104)", vr: "FD", vm: "1", name: "AddPower" }, - "(0046,0106)": { - tag: "(0046,0106)", - vr: "FD", - vm: "1", - name: "ViewingDistance", - }, - "(0046,0110)": { - tag: "(0046,0110)", - vr: "SQ", - vm: "1", - name: "CorneaMeasurementsSequence", - }, - "(0046,0111)": { - tag: "(0046,0111)", - vr: "SQ", - vm: "1", - name: "SourceOfCorneaMeasurementDataCodeSequence", - }, - "(0046,0112)": { - tag: "(0046,0112)", - vr: "SQ", - vm: "1", - name: "SteepCornealAxisSequence", - }, - "(0046,0113)": { - tag: "(0046,0113)", - vr: "SQ", - vm: "1", - name: "FlatCornealAxisSequence", - }, - "(0046,0114)": { - tag: "(0046,0114)", - vr: "FD", - vm: "1", - name: "CornealPower", - }, - "(0046,0115)": { tag: "(0046,0115)", vr: "FD", vm: "1", name: "CornealAxis" }, - "(0046,0116)": { - tag: "(0046,0116)", - vr: "SQ", - vm: "1", - name: "CorneaMeasurementMethodCodeSequence", - }, - "(0046,0117)": { - tag: "(0046,0117)", - vr: "FL", - vm: "1", - name: "RefractiveIndexOfCornea", - }, - "(0046,0118)": { - tag: "(0046,0118)", - vr: "FL", - vm: "1", - name: "RefractiveIndexOfAqueousHumor", - }, - "(0046,0121)": { - tag: "(0046,0121)", - vr: "SQ", - vm: "1", - name: "VisualAcuityTypeCodeSequence", - }, - "(0046,0122)": { - tag: "(0046,0122)", - vr: "SQ", - vm: "1", - name: "VisualAcuityRightEyeSequence", - }, - "(0046,0123)": { - tag: "(0046,0123)", - vr: "SQ", - vm: "1", - name: "VisualAcuityLeftEyeSequence", - }, - "(0046,0124)": { - tag: "(0046,0124)", - vr: "SQ", - vm: "1", - name: "VisualAcuityBothEyesOpenSequence", - }, - "(0046,0125)": { - tag: "(0046,0125)", - vr: "CS", - vm: "1", - name: "ViewingDistanceType", - }, - "(0046,0135)": { - tag: "(0046,0135)", - vr: "SS", - vm: "2", - name: "VisualAcuityModifiers", - }, - "(0046,0137)": { - tag: "(0046,0137)", - vr: "FD", - vm: "1", - name: "DecimalVisualAcuity", - }, - "(0046,0139)": { - tag: "(0046,0139)", - vr: "LO", - vm: "1", - name: "OptotypeDetailedDefinition", - }, - "(0046,0145)": { - tag: "(0046,0145)", - vr: "SQ", - vm: "1", - name: "ReferencedRefractiveMeasurementsSequence", - }, - "(0046,0146)": { tag: "(0046,0146)", vr: "FD", vm: "1", name: "SpherePower" }, - "(0046,0147)": { - tag: "(0046,0147)", - vr: "FD", - vm: "1", - name: "CylinderPower", - }, - "(0046,0201)": { - tag: "(0046,0201)", - vr: "CS", - vm: "1", - name: "CornealTopographySurface", - }, - "(0046,0202)": { - tag: "(0046,0202)", - vr: "FL", - vm: "2", - name: "CornealVertexLocation", - }, - "(0046,0203)": { - tag: "(0046,0203)", - vr: "FL", - vm: "1", - name: "PupilCentroidXCoordinate", - }, - "(0046,0204)": { - tag: "(0046,0204)", - vr: "FL", - vm: "1", - name: "PupilCentroidYCoordinate", - }, - "(0046,0205)": { - tag: "(0046,0205)", - vr: "FL", - vm: "1", - name: "EquivalentPupilRadius", - }, - "(0046,0207)": { - tag: "(0046,0207)", - vr: "SQ", - vm: "1", - name: "CornealTopographyMapTypeCodeSequence", - }, - "(0046,0208)": { - tag: "(0046,0208)", - vr: "IS", - vm: "2-2n", - name: "VerticesOfTheOutlineOfPupil", - }, - "(0046,0210)": { - tag: "(0046,0210)", - vr: "SQ", - vm: "1", - name: "CornealTopographyMappingNormalsSequence", - }, - "(0046,0211)": { - tag: "(0046,0211)", - vr: "SQ", - vm: "1", - name: "MaximumCornealCurvatureSequence", - }, - "(0046,0212)": { - tag: "(0046,0212)", - vr: "FL", - vm: "1", - name: "MaximumCornealCurvature", - }, - "(0046,0213)": { - tag: "(0046,0213)", - vr: "FL", - vm: "2", - name: "MaximumCornealCurvatureLocation", - }, - "(0046,0215)": { - tag: "(0046,0215)", - vr: "SQ", - vm: "1", - name: "MinimumKeratometricSequence", - }, - "(0046,0218)": { - tag: "(0046,0218)", - vr: "SQ", - vm: "1", - name: "SimulatedKeratometricCylinderSequence", - }, - "(0046,0220)": { - tag: "(0046,0220)", - vr: "FL", - vm: "1", - name: "AverageCornealPower", - }, - "(0046,0224)": { - tag: "(0046,0224)", - vr: "FL", - vm: "1", - name: "CornealISValue", - }, - "(0046,0227)": { - tag: "(0046,0227)", - vr: "FL", - vm: "1", - name: "AnalyzedArea", - }, - "(0046,0230)": { - tag: "(0046,0230)", - vr: "FL", - vm: "1", - name: "SurfaceRegularityIndex", - }, - "(0046,0232)": { - tag: "(0046,0232)", - vr: "FL", - vm: "1", - name: "SurfaceAsymmetryIndex", - }, - "(0046,0234)": { - tag: "(0046,0234)", - vr: "FL", - vm: "1", - name: "CornealEccentricityIndex", - }, - "(0046,0236)": { - tag: "(0046,0236)", - vr: "FL", - vm: "1", - name: "KeratoconusPredictionIndex", - }, - "(0046,0238)": { - tag: "(0046,0238)", - vr: "FL", - vm: "1", - name: "DecimalPotentialVisualAcuity", - }, - "(0046,0242)": { - tag: "(0046,0242)", - vr: "CS", - vm: "1", - name: "CornealTopographyMapQualityEvaluation", - }, - "(0046,0244)": { - tag: "(0046,0244)", - vr: "SQ", - vm: "1", - name: "SourceImageCornealProcessedDataSequence", - }, - "(0046,0247)": { - tag: "(0046,0247)", - vr: "FL", - vm: "3", - name: "CornealPointLocation", - }, - "(0046,0248)": { - tag: "(0046,0248)", - vr: "CS", - vm: "1", - name: "CornealPointEstimated", - }, - "(0046,0249)": { tag: "(0046,0249)", vr: "FL", vm: "1", name: "AxialPower" }, - "(0046,0250)": { - tag: "(0046,0250)", - vr: "FL", - vm: "1", - name: "TangentialPower", - }, - "(0046,0251)": { - tag: "(0046,0251)", - vr: "FL", - vm: "1", - name: "RefractivePower", - }, - "(0046,0252)": { - tag: "(0046,0252)", - vr: "FL", - vm: "1", - name: "RelativeElevation", - }, - "(0046,0253)": { - tag: "(0046,0253)", - vr: "FL", - vm: "1", - name: "CornealWavefront", - }, - "(0048,0001)": { - tag: "(0048,0001)", - vr: "FL", - vm: "1", - name: "ImagedVolumeWidth", - }, - "(0048,0002)": { - tag: "(0048,0002)", - vr: "FL", - vm: "1", - name: "ImagedVolumeHeight", - }, - "(0048,0003)": { - tag: "(0048,0003)", - vr: "FL", - vm: "1", - name: "ImagedVolumeDepth", - }, - "(0048,0006)": { - tag: "(0048,0006)", - vr: "UL", - vm: "1", - name: "TotalPixelMatrixColumns", - }, - "(0048,0007)": { - tag: "(0048,0007)", - vr: "UL", - vm: "1", - name: "TotalPixelMatrixRows", - }, - "(0048,0008)": { - tag: "(0048,0008)", - vr: "SQ", - vm: "1", - name: "TotalPixelMatrixOriginSequence", - }, - "(0048,0010)": { - tag: "(0048,0010)", - vr: "CS", - vm: "1", - name: "SpecimenLabelInImage", - }, - "(0048,0011)": { tag: "(0048,0011)", vr: "CS", vm: "1", name: "FocusMethod" }, - "(0048,0012)": { - tag: "(0048,0012)", - vr: "CS", - vm: "1", - name: "ExtendedDepthOfField", - }, - "(0048,0013)": { - tag: "(0048,0013)", - vr: "US", - vm: "1", - name: "NumberOfFocalPlanes", - }, - "(0048,0014)": { - tag: "(0048,0014)", - vr: "FL", - vm: "1", - name: "DistanceBetweenFocalPlanes", - }, - "(0048,0015)": { - tag: "(0048,0015)", - vr: "US", - vm: "3", - name: "RecommendedAbsentPixelCIELabValue", - }, - "(0048,0100)": { - tag: "(0048,0100)", - vr: "SQ", - vm: "1", - name: "IlluminatorTypeCodeSequence", - }, - "(0048,0102)": { - tag: "(0048,0102)", - vr: "DS", - vm: "6", - name: "ImageOrientationSlide", - }, - "(0048,0105)": { - tag: "(0048,0105)", - vr: "SQ", - vm: "1", - name: "OpticalPathSequence", - }, - "(0048,0106)": { - tag: "(0048,0106)", - vr: "SH", - vm: "1", - name: "OpticalPathIdentifier", - }, - "(0048,0107)": { - tag: "(0048,0107)", - vr: "ST", - vm: "1", - name: "OpticalPathDescription", - }, - "(0048,0108)": { - tag: "(0048,0108)", - vr: "SQ", - vm: "1", - name: "IlluminationColorCodeSequence", - }, - "(0048,0110)": { - tag: "(0048,0110)", - vr: "SQ", - vm: "1", - name: "SpecimenReferenceSequence", - }, - "(0048,0111)": { - tag: "(0048,0111)", - vr: "DS", - vm: "1", - name: "CondenserLensPower", - }, - "(0048,0112)": { - tag: "(0048,0112)", - vr: "DS", - vm: "1", - name: "ObjectiveLensPower", - }, - "(0048,0113)": { - tag: "(0048,0113)", - vr: "DS", - vm: "1", - name: "ObjectiveLensNumericalAperture", - }, - "(0048,0120)": { - tag: "(0048,0120)", - vr: "SQ", - vm: "1", - name: "PaletteColorLookupTableSequence", - }, - "(0048,0200)": { - tag: "(0048,0200)", - vr: "SQ", - vm: "1", - name: "ReferencedImageNavigationSequence", - }, - "(0048,0201)": { - tag: "(0048,0201)", - vr: "US", - vm: "2", - name: "TopLeftHandCornerOfLocalizerArea", - }, - "(0048,0202)": { - tag: "(0048,0202)", - vr: "US", - vm: "2", - name: "BottomRightHandCornerOfLocalizerArea", - }, - "(0048,0207)": { - tag: "(0048,0207)", - vr: "SQ", - vm: "1", - name: "OpticalPathIdentificationSequence", - }, - "(0048,021A)": { - tag: "(0048,021A)", - vr: "SQ", - vm: "1", - name: "PlanePositionSlideSequence", - }, - "(0048,021E)": { - tag: "(0048,021E)", - vr: "SL", - vm: "1", - name: "ColumnPositionInTotalImagePixelMatrix", - }, - "(0048,021F)": { - tag: "(0048,021F)", - vr: "SL", - vm: "1", - name: "RowPositionInTotalImagePixelMatrix", - }, - "(0048,0301)": { - tag: "(0048,0301)", - vr: "CS", - vm: "1", - name: "PixelOriginInterpretation", - }, - "(0048,0302)": { - tag: "(0048,0302)", - vr: "UL", - vm: "1", - name: "NumberOfOpticalPaths", - }, - "(0048,0303)": { - tag: "(0048,0303)", - vr: "UL", - vm: "1", - name: "TotalPixelMatrixFocalPlanes", - }, - "(0050,0004)": { - tag: "(0050,0004)", - vr: "CS", - vm: "1", - name: "CalibrationImage", - }, - "(0050,0010)": { - tag: "(0050,0010)", - vr: "SQ", - vm: "1", - name: "DeviceSequence", - }, - "(0050,0012)": { - tag: "(0050,0012)", - vr: "SQ", - vm: "1", - name: "ContainerComponentTypeCodeSequence", - }, - "(0050,0013)": { - tag: "(0050,0013)", - vr: "FD", - vm: "1", - name: "ContainerComponentThickness", - }, - "(0050,0014)": { - tag: "(0050,0014)", - vr: "DS", - vm: "1", - name: "DeviceLength", - }, - "(0050,0015)": { - tag: "(0050,0015)", - vr: "FD", - vm: "1", - name: "ContainerComponentWidth", - }, - "(0050,0016)": { - tag: "(0050,0016)", - vr: "DS", - vm: "1", - name: "DeviceDiameter", - }, - "(0050,0017)": { - tag: "(0050,0017)", - vr: "CS", - vm: "1", - name: "DeviceDiameterUnits", - }, - "(0050,0018)": { - tag: "(0050,0018)", - vr: "DS", - vm: "1", - name: "DeviceVolume", - }, - "(0050,0019)": { - tag: "(0050,0019)", - vr: "DS", - vm: "1", - name: "InterMarkerDistance", - }, - "(0050,001A)": { - tag: "(0050,001A)", - vr: "CS", - vm: "1", - name: "ContainerComponentMaterial", - }, - "(0050,001B)": { - tag: "(0050,001B)", - vr: "LO", - vm: "1", - name: "ContainerComponentID", - }, - "(0050,001C)": { - tag: "(0050,001C)", - vr: "FD", - vm: "1", - name: "ContainerComponentLength", - }, - "(0050,001D)": { - tag: "(0050,001D)", - vr: "FD", - vm: "1", - name: "ContainerComponentDiameter", - }, - "(0050,001E)": { - tag: "(0050,001E)", - vr: "LO", - vm: "1", - name: "ContainerComponentDescription", - }, - "(0050,0020)": { - tag: "(0050,0020)", - vr: "LO", - vm: "1", - name: "DeviceDescription", - }, - "(0050,0021)": { - tag: "(0050,0021)", - vr: "ST", - vm: "1", - name: "LongDeviceDescription", - }, - "(0052,0001)": { - tag: "(0052,0001)", - vr: "FL", - vm: "1", - name: "ContrastBolusIngredientPercentByVolume", - }, - "(0052,0002)": { - tag: "(0052,0002)", - vr: "FD", - 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name: "TimeBasedImageSetsSequence", - }, - "(0072,0032)": { - tag: "(0072,0032)", - vr: "US", - vm: "1", - name: "ImageSetNumber", - }, - "(0072,0034)": { - tag: "(0072,0034)", - vr: "CS", - vm: "1", - name: "ImageSetSelectorCategory", - }, - "(0072,0038)": { - tag: "(0072,0038)", - vr: "US", - vm: "2", - name: "RelativeTime", - }, - "(0072,003A)": { - tag: "(0072,003A)", - vr: "CS", - vm: "1", - name: "RelativeTimeUnits", - }, - "(0072,003C)": { - tag: "(0072,003C)", - vr: "SS", - vm: "2", - name: "AbstractPriorValue", - }, - "(0072,003E)": { - tag: "(0072,003E)", - vr: "SQ", - vm: "1", - name: "AbstractPriorCodeSequence", - }, - "(0072,0040)": { - tag: "(0072,0040)", - vr: "LO", - vm: "1", - name: "ImageSetLabel", - }, - "(0072,0050)": { - tag: "(0072,0050)", - vr: "CS", - vm: "1", - name: "SelectorAttributeVR", - }, - "(0072,0052)": { - tag: "(0072,0052)", - vr: "AT", - vm: "1-n", - name: "SelectorSequencePointer", - }, - "(0072,0054)": { - tag: "(0072,0054)", - vr: "LO", - vm: "1-n", - name: "SelectorSequencePointerPrivateCreator", - }, - "(0072,0056)": { - tag: "(0072,0056)", - vr: "LO", - vm: "1", - name: "SelectorAttributePrivateCreator", - }, - "(0072,005E)": { - tag: "(0072,005E)", - vr: "AE", - vm: "1-n", - name: "SelectorAEValue", - }, - "(0072,005F)": { - tag: "(0072,005F)", - vr: "AS", - vm: "1-n", - name: "SelectorASValue", - }, - "(0072,0060)": { - tag: "(0072,0060)", - vr: "AT", - vm: "1-n", - name: "SelectorATValue", - }, - "(0072,0061)": { - tag: "(0072,0061)", - vr: "DA", - vm: "1-n", - name: "SelectorDAValue", - }, - "(0072,0062)": { - tag: "(0072,0062)", - vr: "CS", - vm: "1-n", - name: "SelectorCSValue", - }, - "(0072,0063)": { - tag: "(0072,0063)", - vr: "DT", - vm: "1-n", - name: "SelectorDTValue", - }, - "(0072,0064)": { - tag: "(0072,0064)", - vr: "IS", - vm: "1-n", - name: "SelectorISValue", - }, - "(0072,0065)": { - tag: "(0072,0065)", - vr: "OB", - vm: "1", - name: "SelectorOBValue", - }, - "(0072,0066)": { - tag: "(0072,0066)", - vr: "LO", - vm: "1-n", - name: "SelectorLOValue", - }, - "(0072,0067)": { - tag: "(0072,0067)", - vr: "OF", - vm: "1", - name: "SelectorOFValue", - }, - "(0072,0068)": { - tag: "(0072,0068)", - vr: "LT", - vm: "1", - name: "SelectorLTValue", - }, - "(0072,0069)": { - tag: "(0072,0069)", - vr: "OW", - vm: "1", - name: "SelectorOWValue", - }, - "(0072,006A)": { - tag: "(0072,006A)", - vr: "PN", - vm: "1-n", - name: "SelectorPNValue", - }, - "(0072,006B)": { - tag: "(0072,006B)", - vr: "TM", - vm: "1-n", - name: "SelectorTMValue", - }, - "(0072,006C)": { - tag: "(0072,006C)", - vr: "SH", - vm: "1-n", - name: "SelectorSHValue", - }, - "(0072,006D)": { - tag: "(0072,006D)", - vr: "UN", - vm: "1", - name: "SelectorUNValue", - }, - "(0072,006E)": { - tag: "(0072,006E)", - vr: "ST", - vm: "1", - name: "SelectorSTValue", - }, - "(0072,006F)": { - tag: "(0072,006F)", - vr: "UC", - vm: "1-n", - name: "SelectorUCValue", - }, - "(0072,0070)": { - tag: "(0072,0070)", - vr: "UT", - vm: "1", - name: "SelectorUTValue", - }, - "(0072,0071)": { - tag: "(0072,0071)", - vr: "UR", - vm: "1", - name: "SelectorURValue", - }, - "(0072,0072)": { - tag: "(0072,0072)", - vr: "DS", - vm: "1-n", - name: "SelectorDSValue", - }, - "(0072,0073)": { - tag: "(0072,0073)", - vr: "OD", - vm: "1", - name: "SelectorODValue", - }, - "(0072,0074)": { - tag: "(0072,0074)", - vr: "FD", - vm: "1-n", - name: "SelectorFDValue", - }, - "(0072,0075)": { - tag: "(0072,0075)", - vr: "OL", - vm: "1", - name: "SelectorOLValue", - }, - "(0072,0076)": { - tag: "(0072,0076)", - vr: "FL", - vm: "1-n", - name: "SelectorFLValue", - }, - "(0072,0078)": { - tag: "(0072,0078)", - vr: "UL", - vm: "1-n", - name: "SelectorULValue", - }, - "(0072,007A)": { - tag: "(0072,007A)", - vr: "US", - vm: "1-n", - name: "SelectorUSValue", - }, - "(0072,007C)": { - tag: "(0072,007C)", - vr: "SL", - vm: "1-n", - name: "SelectorSLValue", - }, - "(0072,007E)": { - tag: "(0072,007E)", - vr: "SS", - vm: "1-n", - name: "SelectorSSValue", - }, - "(0072,007F)": { - tag: "(0072,007F)", - vr: "UI", - vm: "1-n", - name: "SelectorUIValue", - }, - "(0072,0080)": { - tag: "(0072,0080)", - vr: "SQ", - vm: "1", - name: "SelectorCodeSequenceValue", - }, - "(0072,0081)": { - tag: "(0072,0081)", - vr: "OV", - vm: "1", - name: "SelectorOVValue", - }, - "(0072,0082)": { - tag: "(0072,0082)", - vr: "SV", - vm: "1-n", - name: "SelectorSVValue", - }, - "(0072,0083)": { - tag: "(0072,0083)", - vr: "UV", - vm: "1-n", - name: "SelectorUVValue", - }, - "(0072,0100)": { - tag: "(0072,0100)", - vr: "US", - vm: "1", - name: "NumberOfScreens", - }, - "(0072,0102)": { - tag: "(0072,0102)", - vr: "SQ", - vm: "1", - name: "NominalScreenDefinitionSequence", - }, - "(0072,0104)": { - tag: "(0072,0104)", - vr: "US", - vm: "1", - name: "NumberOfVerticalPixels", - }, - "(0072,0106)": { - tag: "(0072,0106)", - vr: "US", - vm: "1", - name: "NumberOfHorizontalPixels", - }, - "(0072,0108)": { - tag: "(0072,0108)", - vr: "FD", - vm: "4", - name: "DisplayEnvironmentSpatialPosition", - }, - "(0072,010A)": { - tag: "(0072,010A)", - vr: "US", - vm: "1", - name: "ScreenMinimumGrayscaleBitDepth", - }, - "(0072,010C)": { - tag: "(0072,010C)", - vr: "US", - vm: "1", - name: "ScreenMinimumColorBitDepth", - }, - "(0072,010E)": { - tag: "(0072,010E)", - vr: "US", - vm: "1", - name: "ApplicationMaximumRepaintTime", - }, - "(0072,0200)": { - tag: "(0072,0200)", - vr: "SQ", - vm: "1", - name: "DisplaySetsSequence", - }, - "(0072,0202)": { - tag: "(0072,0202)", - vr: "US", - vm: "1", - name: "DisplaySetNumber", - }, - "(0072,0203)": { - tag: "(0072,0203)", - vr: "LO", - vm: "1", - name: "DisplaySetLabel", - }, - "(0072,0204)": { - tag: "(0072,0204)", - vr: "US", - vm: "1", - name: "DisplaySetPresentationGroup", - }, - "(0072,0206)": { - tag: "(0072,0206)", - vr: "LO", - vm: "1", - name: "DisplaySetPresentationGroupDescription", - }, - "(0072,0208)": { - tag: "(0072,0208)", - vr: "CS", - vm: "1", - name: "PartialDataDisplayHandling", - }, - "(0072,0210)": { - tag: "(0072,0210)", - vr: "SQ", - vm: "1", - name: "SynchronizedScrollingSequence", - }, - "(0072,0212)": { - tag: "(0072,0212)", - vr: "US", - vm: "2-n", - name: "DisplaySetScrollingGroup", - }, - "(0072,0214)": { - tag: "(0072,0214)", - vr: "SQ", - vm: "1", - name: "NavigationIndicatorSequence", - }, - "(0072,0216)": { - tag: "(0072,0216)", - vr: "US", - vm: "1", - name: "NavigationDisplaySet", - }, - "(0072,0218)": { - tag: "(0072,0218)", - vr: "US", - vm: "1-n", - name: "ReferenceDisplaySets", - }, - "(0072,0300)": { - tag: "(0072,0300)", - vr: "SQ", - vm: "1", - name: "ImageBoxesSequence", - }, - "(0072,0302)": { - tag: "(0072,0302)", - vr: "US", - vm: "1", - name: "ImageBoxNumber", - }, - "(0072,0304)": { - tag: "(0072,0304)", - vr: "CS", - vm: "1", - name: "ImageBoxLayoutType", - }, - "(0072,0306)": { - tag: "(0072,0306)", - vr: "US", - vm: "1", - name: "ImageBoxTileHorizontalDimension", - }, - "(0072,0308)": { - tag: "(0072,0308)", - vr: "US", - vm: "1", - name: "ImageBoxTileVerticalDimension", - }, - "(0072,0310)": { - tag: "(0072,0310)", - vr: "CS", - vm: "1", - name: "ImageBoxScrollDirection", - }, - "(0072,0312)": { - tag: "(0072,0312)", - vr: "CS", - vm: "1", - name: "ImageBoxSmallScrollType", - }, - "(0072,0314)": { - tag: "(0072,0314)", - vr: "US", - vm: "1", - name: "ImageBoxSmallScrollAmount", - }, - "(0072,0316)": { - tag: "(0072,0316)", - vr: "CS", - vm: "1", - name: "ImageBoxLargeScrollType", - }, - "(0072,0318)": { - tag: "(0072,0318)", - vr: "US", - vm: "1", - name: "ImageBoxLargeScrollAmount", - }, - "(0072,0320)": { - tag: "(0072,0320)", - vr: "US", - vm: "1", - name: "ImageBoxOverlapPriority", - }, - "(0072,0330)": { - tag: "(0072,0330)", - vr: "FD", - vm: "1", - name: "CineRelativeToRealTime", - }, - "(0072,0400)": { - tag: "(0072,0400)", - vr: "SQ", - vm: "1", - name: "FilterOperationsSequence", - }, - "(0072,0402)": { - tag: "(0072,0402)", - vr: "CS", - vm: "1", - name: "FilterByCategory", - }, - "(0072,0404)": { - tag: "(0072,0404)", - vr: "CS", - vm: "1", - name: "FilterByAttributePresence", - }, - "(0072,0406)": { - tag: "(0072,0406)", - vr: "CS", - vm: "1", - name: "FilterByOperator", - }, - "(0072,0420)": { - tag: "(0072,0420)", - vr: "US", - vm: "3", - name: "StructuredDisplayBackgroundCIELabValue", - }, - "(0072,0421)": { - tag: "(0072,0421)", - vr: "US", - vm: "3", - name: "EmptyImageBoxCIELabValue", - }, - "(0072,0422)": { - tag: "(0072,0422)", - vr: "SQ", - vm: "1", - name: "StructuredDisplayImageBoxSequence", - }, - "(0072,0424)": { - tag: "(0072,0424)", - vr: "SQ", - vm: "1", - name: "StructuredDisplayTextBoxSequence", - }, - "(0072,0427)": { - tag: "(0072,0427)", - vr: "SQ", - vm: "1", - name: "ReferencedFirstFrameSequence", - }, - "(0072,0430)": { - tag: "(0072,0430)", - vr: "SQ", - vm: "1", - name: "ImageBoxSynchronizationSequence", - }, - "(0072,0432)": { - tag: "(0072,0432)", - vr: "US", - vm: "2-n", - name: "SynchronizedImageBoxList", - }, - "(0072,0434)": { - tag: "(0072,0434)", - vr: "CS", - vm: "1", - name: "TypeOfSynchronization", - }, - "(0072,0500)": { - tag: "(0072,0500)", - vr: "CS", - vm: "1", - name: "BlendingOperationType", - }, - "(0072,0510)": { - tag: "(0072,0510)", - vr: "CS", - vm: "1", - name: "ReformattingOperationType", - }, - "(0072,0512)": { - tag: "(0072,0512)", - vr: "FD", - vm: "1", - name: "ReformattingThickness", - }, - "(0072,0514)": { - tag: "(0072,0514)", - vr: "FD", - vm: "1", - name: "ReformattingInterval", - }, - "(0072,0516)": { - tag: "(0072,0516)", - vr: "CS", - vm: "1", - name: "ReformattingOperationInitialViewDirection", - }, - "(0072,0520)": { - tag: "(0072,0520)", - vr: "CS", - vm: "1-n", - name: "ThreeDRenderingType", - }, - "(0072,0600)": { - tag: "(0072,0600)", - vr: "SQ", - vm: "1", - name: "SortingOperationsSequence", - }, - "(0072,0602)": { - tag: "(0072,0602)", - vr: "CS", - vm: "1", - name: "SortByCategory", - }, - "(0072,0604)": { - tag: "(0072,0604)", - vr: "CS", - vm: "1", - name: "SortingDirection", - }, - "(0072,0700)": { - tag: "(0072,0700)", - vr: "CS", - vm: "2", - name: "DisplaySetPatientOrientation", - }, - "(0072,0702)": { tag: "(0072,0702)", vr: "CS", vm: "1", name: "VOIType" }, - "(0072,0704)": { - tag: "(0072,0704)", - vr: "CS", - vm: "1", - name: "PseudoColorType", - }, - "(0072,0705)": { - tag: "(0072,0705)", - vr: "SQ", - vm: "1", - name: "PseudoColorPaletteInstanceReferenceSequence", - }, - "(0072,0706)": { - tag: "(0072,0706)", - vr: "CS", - vm: "1", - name: "ShowGrayscaleInverted", - }, - "(0072,0710)": { - tag: "(0072,0710)", - vr: "CS", - vm: "1", - name: "ShowImageTrueSizeFlag", - }, - "(0072,0712)": { - tag: "(0072,0712)", - vr: "CS", - vm: "1", - name: "ShowGraphicAnnotationFlag", - }, - "(0072,0714)": { - tag: "(0072,0714)", - vr: "CS", - vm: "1", - name: "ShowPatientDemographicsFlag", - }, - "(0072,0716)": { - tag: "(0072,0716)", - vr: "CS", - vm: "1", - name: "ShowAcquisitionTechniquesFlag", - }, - "(0072,0717)": { - tag: "(0072,0717)", - vr: "CS", - vm: "1", - name: "DisplaySetHorizontalJustification", - }, - "(0072,0718)": { - tag: "(0072,0718)", - vr: "CS", - vm: "1", - name: "DisplaySetVerticalJustification", - }, - "(0074,0120)": { - tag: "(0074,0120)", - vr: "FD", - vm: "1", - name: "ContinuationStartMeterset", - }, - "(0074,0121)": { - tag: "(0074,0121)", - vr: "FD", - vm: "1", - name: "ContinuationEndMeterset", - }, - "(0074,1000)": { - tag: "(0074,1000)", - vr: "CS", - vm: "1", - name: "ProcedureStepState", - }, - "(0074,1002)": { - tag: "(0074,1002)", - vr: "SQ", - vm: "1", - name: "ProcedureStepProgressInformationSequence", - }, - "(0074,1004)": { - tag: "(0074,1004)", - vr: "DS", - vm: "1", - name: "ProcedureStepProgress", - }, - "(0074,1006)": { - tag: "(0074,1006)", - vr: "ST", - vm: "1", - name: "ProcedureStepProgressDescription", - }, - "(0074,1007)": { - tag: "(0074,1007)", - vr: "SQ", - vm: "1", - name: "ProcedureStepProgressParametersSequence", - }, - "(0074,1008)": { - tag: "(0074,1008)", - vr: "SQ", - vm: "1", - name: "ProcedureStepCommunicationsURISequence", - }, - "(0074,100A)": { tag: "(0074,100A)", vr: "UR", vm: "1", name: "ContactURI" }, - "(0074,100C)": { - tag: "(0074,100C)", - vr: "LO", - vm: "1", - name: "ContactDisplayName", - }, - "(0074,100E)": { - tag: "(0074,100E)", - vr: "SQ", - vm: "1", - name: "ProcedureStepDiscontinuationReasonCodeSequence", - }, - "(0074,1020)": { - tag: "(0074,1020)", - vr: "SQ", - vm: "1", - name: "BeamTaskSequence", - }, - "(0074,1022)": { - tag: "(0074,1022)", - vr: "CS", - vm: "1", - name: "BeamTaskType", - }, - "(0074,1024)": { - tag: "(0074,1024)", - vr: "IS", - vm: "1", - name: "BeamOrderIndexTrial", - }, - "(0074,1025)": { - tag: "(0074,1025)", - vr: "CS", - vm: "1", - name: "AutosequenceFlag", - }, - "(0074,1026)": { - tag: "(0074,1026)", - vr: "FD", - vm: "1", - name: "TableTopVerticalAdjustedPosition", - }, - "(0074,1027)": { - tag: "(0074,1027)", - vr: "FD", - vm: "1", - name: "TableTopLongitudinalAdjustedPosition", - }, - "(0074,1028)": { - tag: "(0074,1028)", - vr: "FD", - vm: "1", - name: "TableTopLateralAdjustedPosition", - }, - "(0074,102A)": { - tag: "(0074,102A)", - vr: "FD", - vm: "1", - name: "PatientSupportAdjustedAngle", - }, - "(0074,102B)": { - tag: "(0074,102B)", - vr: "FD", - vm: "1", - name: "TableTopEccentricAdjustedAngle", - }, - "(0074,102C)": { - tag: "(0074,102C)", - vr: "FD", - vm: "1", - name: "TableTopPitchAdjustedAngle", - }, - "(0074,102D)": { - tag: "(0074,102D)", - vr: "FD", - vm: "1", - name: "TableTopRollAdjustedAngle", - }, - "(0074,1030)": { - tag: "(0074,1030)", - vr: "SQ", - vm: "1", - name: "DeliveryVerificationImageSequence", - }, - "(0074,1032)": { - tag: "(0074,1032)", - vr: "CS", - vm: "1", - name: "VerificationImageTiming", - }, - "(0074,1034)": { - tag: "(0074,1034)", - vr: "CS", - vm: "1", - name: "DoubleExposureFlag", - }, - "(0074,1036)": { - tag: "(0074,1036)", - vr: "CS", - vm: "1", - name: "DoubleExposureOrdering", - }, - "(0074,1038)": { - tag: "(0074,1038)", - vr: "DS", - vm: "1", - name: "DoubleExposureMetersetTrial", - }, - "(0074,103A)": { - tag: "(0074,103A)", - vr: "DS", - vm: "4", - name: "DoubleExposureFieldDeltaTrial", - }, - "(0074,1040)": { - tag: "(0074,1040)", - vr: "SQ", - vm: "1", - name: "RelatedReferenceRTImageSequence", - }, - "(0074,1042)": { - tag: "(0074,1042)", - vr: "SQ", - vm: "1", - name: "GeneralMachineVerificationSequence", - }, - "(0074,1044)": { - tag: "(0074,1044)", - vr: "SQ", - vm: "1", - name: "ConventionalMachineVerificationSequence", - }, - "(0074,1046)": { - tag: "(0074,1046)", - vr: "SQ", - vm: "1", - name: "IonMachineVerificationSequence", - }, - "(0074,1048)": { - tag: "(0074,1048)", - vr: "SQ", - vm: "1", - name: "FailedAttributesSequence", - }, - "(0074,104A)": { - tag: "(0074,104A)", - vr: "SQ", - vm: "1", - name: "OverriddenAttributesSequence", - }, - "(0074,104C)": { - tag: "(0074,104C)", - vr: "SQ", - vm: "1", - name: "ConventionalControlPointVerificationSequence", - }, - "(0074,104E)": { - tag: "(0074,104E)", - vr: "SQ", - vm: "1", - name: "IonControlPointVerificationSequence", - }, - "(0074,1050)": { - tag: "(0074,1050)", - vr: "SQ", - vm: "1", - name: "AttributeOccurrenceSequence", - }, - "(0074,1052)": { - tag: "(0074,1052)", - vr: "AT", - vm: "1", - name: "AttributeOccurrencePointer", - }, - "(0074,1054)": { - tag: "(0074,1054)", - vr: "UL", - vm: "1", - name: "AttributeItemSelector", - }, - "(0074,1056)": { - tag: "(0074,1056)", - vr: "LO", - vm: "1", - name: "AttributeOccurrencePrivateCreator", - }, - "(0074,1057)": { - tag: "(0074,1057)", - vr: "IS", - vm: "1-n", - name: "SelectorSequencePointerItems", - }, - "(0074,1200)": { - tag: "(0074,1200)", - vr: "CS", - vm: "1", - name: "ScheduledProcedureStepPriority", - }, - "(0074,1202)": { - tag: "(0074,1202)", - vr: "LO", - vm: "1", - name: "WorklistLabel", - }, - "(0074,1204)": { - tag: "(0074,1204)", - vr: "LO", - vm: "1", - name: "ProcedureStepLabel", - }, - "(0074,1210)": { - tag: "(0074,1210)", - vr: "SQ", - vm: "1", - name: "ScheduledProcessingParametersSequence", - }, - "(0074,1212)": { - tag: "(0074,1212)", - vr: "SQ", - vm: "1", - name: "PerformedProcessingParametersSequence", - }, - "(0074,1216)": { - tag: "(0074,1216)", - vr: "SQ", - vm: "1", - name: "UnifiedProcedureStepPerformedProcedureSequence", - }, - "(0074,1220)": { - tag: "(0074,1220)", - vr: "SQ", - vm: "1", - name: "RelatedProcedureStepSequence", - }, - "(0074,1222)": { - tag: "(0074,1222)", - vr: "LO", - vm: "1", - name: "ProcedureStepRelationshipType", - }, - "(0074,1224)": { - tag: "(0074,1224)", - vr: "SQ", - vm: "1", - name: "ReplacedProcedureStepSequence", - }, - "(0074,1230)": { - tag: "(0074,1230)", - vr: "LO", - vm: "1", - name: "DeletionLock", - }, - "(0074,1234)": { tag: "(0074,1234)", vr: "AE", vm: "1", name: "ReceivingAE" }, - "(0074,1236)": { - tag: "(0074,1236)", - vr: "AE", - vm: "1", - name: "RequestingAE", - }, - "(0074,1238)": { - tag: "(0074,1238)", - vr: "LT", - vm: "1", - name: "ReasonForCancellation", - }, - "(0074,1242)": { tag: "(0074,1242)", vr: "CS", vm: "1", name: "SCPStatus" }, - "(0074,1244)": { - tag: "(0074,1244)", - vr: "CS", - vm: "1", - name: "SubscriptionListStatus", - }, - "(0074,1246)": { - tag: "(0074,1246)", - vr: "CS", - vm: "1", - name: "UnifiedProcedureStepListStatus", - }, - "(0074,1324)": { - tag: "(0074,1324)", - vr: "UL", - vm: "1", - name: "BeamOrderIndex", - }, - "(0074,1338)": { - tag: "(0074,1338)", - vr: "FD", - vm: "1", - name: "DoubleExposureMeterset", - }, - "(0074,133A)": { - tag: "(0074,133A)", - vr: "FD", - vm: "4", - name: "DoubleExposureFieldDelta", - }, - "(0074,1401)": { - tag: "(0074,1401)", - vr: "SQ", - vm: "1", - name: "BrachyTaskSequence", - }, - "(0074,1402)": { - tag: "(0074,1402)", - vr: "DS", - vm: "1", - name: "ContinuationStartTotalReferenceAirKerma", - }, - "(0074,1403)": { - tag: "(0074,1403)", - vr: "DS", - vm: "1", - name: "ContinuationEndTotalReferenceAirKerma", - }, - "(0074,1404)": { - tag: "(0074,1404)", - vr: "IS", - vm: "1", - name: "ContinuationPulseNumber", - }, - "(0074,1405)": { - tag: "(0074,1405)", - vr: "SQ", - vm: "1", - name: "ChannelDeliveryOrderSequence", - }, - "(0074,1406)": { - tag: "(0074,1406)", - vr: "IS", - vm: "1", - name: "ReferencedChannelNumber", - }, - "(0074,1407)": { - tag: "(0074,1407)", - vr: "DS", - vm: "1", - name: "StartCumulativeTimeWeight", - }, - "(0074,1408)": { - tag: "(0074,1408)", - vr: "DS", - vm: "1", - name: "EndCumulativeTimeWeight", - }, - "(0074,1409)": { - tag: "(0074,1409)", - vr: "SQ", - vm: "1", - name: "OmittedChannelSequence", - }, - "(0074,140A)": { - tag: "(0074,140A)", - vr: "CS", - vm: "1", - name: "ReasonForChannelOmission", - }, - "(0074,140B)": { - tag: "(0074,140B)", - vr: "LO", - vm: "1", - name: "ReasonForChannelOmissionDescription", - }, - "(0074,140C)": { - tag: "(0074,140C)", - vr: "IS", - vm: "1", - name: "ChannelDeliveryOrderIndex", - }, - "(0074,140D)": { - tag: "(0074,140D)", - vr: "SQ", - vm: "1", - name: "ChannelDeliveryContinuationSequence", - }, - "(0074,140E)": { - tag: "(0074,140E)", - vr: "SQ", - vm: "1", - name: "OmittedApplicationSetupSequence", - }, - "(0076,0001)": { - tag: "(0076,0001)", - vr: "LO", - vm: "1", - name: "ImplantAssemblyTemplateName", - }, - "(0076,0003)": { - tag: "(0076,0003)", - vr: "LO", - vm: "1", - name: "ImplantAssemblyTemplateIssuer", - }, - "(0076,0006)": { - tag: "(0076,0006)", - vr: "LO", - vm: "1", - name: "ImplantAssemblyTemplateVersion", - }, - "(0076,0008)": { - tag: "(0076,0008)", - vr: "SQ", - vm: "1", - name: "ReplacedImplantAssemblyTemplateSequence", - }, - "(0076,000A)": { - tag: "(0076,000A)", - vr: "CS", - vm: "1", - name: "ImplantAssemblyTemplateType", - }, - "(0076,000C)": { - tag: "(0076,000C)", - vr: "SQ", - vm: "1", - name: "OriginalImplantAssemblyTemplateSequence", - }, - "(0076,000E)": { - tag: "(0076,000E)", - vr: "SQ", - vm: "1", - name: "DerivationImplantAssemblyTemplateSequence", - }, - "(0076,0010)": { - tag: "(0076,0010)", - vr: "SQ", - vm: "1", - name: "ImplantAssemblyTemplateTargetAnatomySequence", - }, - "(0076,0020)": { - tag: "(0076,0020)", - vr: "SQ", - vm: "1", - name: "ProcedureTypeCodeSequence", - }, - "(0076,0030)": { - tag: "(0076,0030)", - vr: "LO", - vm: "1", - name: "SurgicalTechnique", - }, - "(0076,0032)": { - tag: "(0076,0032)", - vr: "SQ", - vm: "1", - name: "ComponentTypesSequence", - }, - "(0076,0034)": { - tag: "(0076,0034)", - vr: "SQ", - vm: "1", - name: "ComponentTypeCodeSequence", - }, - "(0076,0036)": { - tag: "(0076,0036)", - vr: "CS", - vm: "1", - name: "ExclusiveComponentType", - }, - "(0076,0038)": { - tag: "(0076,0038)", - vr: "CS", - vm: "1", - name: "MandatoryComponentType", - }, - "(0076,0040)": { - tag: "(0076,0040)", - vr: "SQ", - vm: "1", - name: "ComponentSequence", - }, - "(0076,0055)": { tag: "(0076,0055)", vr: "US", vm: "1", name: "ComponentID" }, - "(0076,0060)": { - tag: "(0076,0060)", - vr: "SQ", - vm: "1", - name: "ComponentAssemblySequence", - }, - "(0076,0070)": { - tag: "(0076,0070)", - vr: "US", - vm: "1", - name: "Component1ReferencedID", - }, - "(0076,0080)": { - tag: "(0076,0080)", - vr: "US", - vm: "1", - name: "Component1ReferencedMatingFeatureSetID", - }, - "(0076,0090)": { - tag: "(0076,0090)", - vr: "US", - vm: "1", - name: "Component1ReferencedMatingFeatureID", - }, - "(0076,00A0)": { - tag: "(0076,00A0)", - vr: "US", - vm: "1", - name: "Component2ReferencedID", - }, - "(0076,00B0)": { - tag: "(0076,00B0)", - vr: "US", - vm: "1", - name: "Component2ReferencedMatingFeatureSetID", - }, - "(0076,00C0)": { - tag: "(0076,00C0)", - vr: "US", - vm: "1", - name: "Component2ReferencedMatingFeatureID", - }, - "(0078,0001)": { - tag: "(0078,0001)", - vr: "LO", - vm: "1", - name: "ImplantTemplateGroupName", - }, - "(0078,0010)": { - tag: "(0078,0010)", - vr: "ST", - vm: "1", - name: "ImplantTemplateGroupDescription", - }, - "(0078,0020)": { - tag: "(0078,0020)", - vr: "LO", - vm: "1", - name: "ImplantTemplateGroupIssuer", - }, - "(0078,0024)": { - tag: "(0078,0024)", - vr: "LO", - vm: "1", - name: "ImplantTemplateGroupVersion", - }, - "(0078,0026)": { - tag: "(0078,0026)", - vr: "SQ", - vm: "1", - name: "ReplacedImplantTemplateGroupSequence", - }, - "(0078,0028)": { - tag: "(0078,0028)", - vr: "SQ", - vm: "1", - name: "ImplantTemplateGroupTargetAnatomySequence", - }, - "(0078,002A)": { - tag: "(0078,002A)", - vr: "SQ", - vm: "1", - name: "ImplantTemplateGroupMembersSequence", - }, - "(0078,002E)": { - tag: "(0078,002E)", - vr: "US", - vm: "1", - name: "ImplantTemplateGroupMemberID", - }, - "(0078,0050)": { - tag: "(0078,0050)", - vr: "FD", - vm: "3", - name: "ThreeDImplantTemplateGroupMemberMatchingPoint", - }, - "(0078,0060)": { - tag: "(0078,0060)", - vr: "FD", - vm: "9", - name: "ThreeDImplantTemplateGroupMemberMatchingAxes", - }, - "(0078,0070)": { - tag: "(0078,0070)", - vr: "SQ", - vm: "1", - name: "ImplantTemplateGroupMemberMatching2DCoordinatesSequence", - }, - "(0078,0090)": { - tag: "(0078,0090)", - vr: "FD", - vm: "2", - name: "TwoDImplantTemplateGroupMemberMatchingPoint", - }, - "(0078,00A0)": { - tag: "(0078,00A0)", - vr: "FD", - vm: "4", - name: "TwoDImplantTemplateGroupMemberMatchingAxes", - }, - "(0078,00B0)": { - tag: "(0078,00B0)", - vr: "SQ", - vm: "1", - name: "ImplantTemplateGroupVariationDimensionSequence", - }, - "(0078,00B2)": { - tag: "(0078,00B2)", - vr: "LO", - vm: "1", - name: "ImplantTemplateGroupVariationDimensionName", - }, - "(0078,00B4)": { - tag: "(0078,00B4)", - vr: "SQ", - vm: "1", - name: "ImplantTemplateGroupVariationDimensionRankSequence", - }, - "(0078,00B6)": { - tag: "(0078,00B6)", - vr: "US", - vm: "1", - name: "ReferencedImplantTemplateGroupMemberID", - }, - "(0078,00B8)": { - tag: "(0078,00B8)", - vr: "US", - vm: "1", - name: "ImplantTemplateGroupVariationDimensionRank", - }, - "(0080,0001)": { - tag: "(0080,0001)", - vr: "SQ", - vm: "1", - name: "SurfaceScanAcquisitionTypeCodeSequence", - }, - "(0080,0002)": { - tag: "(0080,0002)", - vr: "SQ", - vm: "1", - name: "SurfaceScanModeCodeSequence", - }, - "(0080,0003)": { - tag: "(0080,0003)", - vr: "SQ", - vm: "1", - name: "RegistrationMethodCodeSequence", - }, - "(0080,0004)": { - tag: "(0080,0004)", - vr: "FD", - vm: "1", - name: "ShotDurationTime", - }, - "(0080,0005)": { - tag: "(0080,0005)", - vr: "FD", - vm: "1", - name: "ShotOffsetTime", - }, - "(0080,0006)": { - tag: "(0080,0006)", - vr: "US", - vm: "1-n", - name: "SurfacePointPresentationValueData", - }, - "(0080,0007)": { - tag: "(0080,0007)", - vr: "US", - vm: "3-3n", - name: "SurfacePointColorCIELabValueData", - }, - "(0080,0008)": { - tag: "(0080,0008)", - vr: "SQ", - vm: "1", - name: "UVMappingSequence", - }, - "(0080,0009)": { - tag: "(0080,0009)", - vr: "SH", - vm: "1", - name: "TextureLabel", - }, - "(0080,0010)": { tag: "(0080,0010)", vr: "OF", vm: "1", name: "UValueData" }, - "(0080,0011)": { tag: "(0080,0011)", vr: "OF", vm: "1", name: "VValueData" }, - "(0080,0012)": { - tag: "(0080,0012)", - vr: "SQ", - vm: "1", - name: "ReferencedTextureSequence", - }, - "(0080,0013)": { - tag: "(0080,0013)", - vr: "SQ", - vm: "1", - name: "ReferencedSurfaceDataSequence", - }, - "(0082,0001)": { - tag: "(0082,0001)", - vr: "CS", - vm: "1", - name: "AssessmentSummary", - }, - "(0082,0003)": { - tag: "(0082,0003)", - vr: "UT", - vm: "1", - name: "AssessmentSummaryDescription", - }, - "(0082,0004)": { - tag: "(0082,0004)", - vr: "SQ", - vm: "1", - name: "AssessedSOPInstanceSequence", - }, - "(0082,0005)": { - tag: "(0082,0005)", - vr: "SQ", - vm: "1", - name: "ReferencedComparisonSOPInstanceSequence", - }, - "(0082,0006)": { - tag: "(0082,0006)", - vr: "UL", - vm: "1", - name: "NumberOfAssessmentObservations", - }, - "(0082,0007)": { - tag: "(0082,0007)", - vr: "SQ", - vm: "1", - name: "AssessmentObservationsSequence", - }, - "(0082,0008)": { - tag: "(0082,0008)", - vr: "CS", - vm: "1", - name: "ObservationSignificance", - }, - "(0082,000A)": { - tag: "(0082,000A)", - vr: "UT", - vm: "1", - name: "ObservationDescription", - }, - "(0082,000C)": { - tag: "(0082,000C)", - vr: "SQ", - vm: "1", - name: "StructuredConstraintObservationSequence", - }, - "(0082,0010)": { - tag: "(0082,0010)", - vr: "SQ", - vm: "1", - name: "AssessedAttributeValueSequence", - }, - "(0082,0016)": { - tag: "(0082,0016)", - vr: "LO", - vm: "1", - name: "AssessmentSetID", - }, - "(0082,0017)": { - tag: "(0082,0017)", - vr: "SQ", - vm: "1", - name: "AssessmentRequesterSequence", - }, - "(0082,0018)": { - tag: "(0082,0018)", - vr: "LO", - vm: "1", - name: "SelectorAttributeName", - }, - "(0082,0019)": { - tag: "(0082,0019)", - vr: "LO", - vm: "1", - name: "SelectorAttributeKeyword", - }, - "(0082,0021)": { - tag: "(0082,0021)", - vr: "SQ", - vm: "1", - name: "AssessmentTypeCodeSequence", - }, - "(0082,0022)": { - tag: "(0082,0022)", - vr: "SQ", - vm: "1", - name: "ObservationBasisCodeSequence", - }, - "(0082,0023)": { - tag: "(0082,0023)", - vr: "LO", - vm: "1", - name: "AssessmentLabel", - }, - "(0082,0032)": { - tag: "(0082,0032)", - vr: "CS", - vm: "1", - name: "ConstraintType", - }, - "(0082,0033)": { - tag: "(0082,0033)", - vr: "UT", - vm: "1", - name: "SpecificationSelectionGuidance", - }, - "(0082,0034)": { - tag: "(0082,0034)", - vr: "SQ", - vm: "1", - name: "ConstraintValueSequence", - }, - "(0082,0035)": { - tag: "(0082,0035)", - vr: "SQ", - vm: "1", - name: "RecommendedDefaultValueSequence", - }, - "(0082,0036)": { - tag: "(0082,0036)", - vr: "CS", - vm: "1", - name: "ConstraintViolationSignificance", - }, - "(0082,0037)": { - tag: "(0082,0037)", - vr: "UT", - vm: "1", - name: "ConstraintViolationCondition", - }, - "(0082,0038)": { - tag: "(0082,0038)", - vr: "CS", - vm: "1", - name: "ModifiableConstraintFlag", - }, - "(0088,0130)": { - tag: "(0088,0130)", - vr: "SH", - vm: "1", - name: "StorageMediaFileSetID", - }, - "(0088,0140)": { - tag: "(0088,0140)", - vr: "UI", - vm: "1", - name: "StorageMediaFileSetUID", - }, - "(0088,0200)": { - tag: "(0088,0200)", - vr: "SQ", - vm: "1", - name: "IconImageSequence", - }, - "(0088,0904)": { tag: "(0088,0904)", vr: "LO", vm: "1", name: "TopicTitle" }, - "(0088,0906)": { - tag: "(0088,0906)", - vr: "ST", - vm: "1", - name: "TopicSubject", - }, - "(0088,0910)": { tag: "(0088,0910)", vr: "LO", vm: "1", name: "TopicAuthor" }, - "(0088,0912)": { - tag: "(0088,0912)", - vr: "LO", - vm: "1-32", - name: "TopicKeywords", - }, - "(0100,0410)": { - tag: "(0100,0410)", - vr: "CS", - vm: "1", - name: "SOPInstanceStatus", - }, - "(0100,0420)": { - tag: "(0100,0420)", - vr: "DT", - vm: "1", - name: "SOPAuthorizationDateTime", - }, - "(0100,0424)": { - tag: "(0100,0424)", - vr: "LT", - vm: "1", - name: "SOPAuthorizationComment", - }, - "(0100,0426)": { - tag: "(0100,0426)", - vr: "LO", - vm: "1", - name: "AuthorizationEquipmentCertificationNumber", - }, - "(0400,0005)": { tag: "(0400,0005)", vr: "US", vm: "1", name: "MACIDNumber" }, - "(0400,0010)": { - tag: "(0400,0010)", - vr: "UI", - vm: "1", - name: "MACCalculationTransferSyntaxUID", - }, - "(0400,0015)": { - tag: "(0400,0015)", - vr: "CS", - vm: "1", - name: "MACAlgorithm", - }, - "(0400,0020)": { - tag: "(0400,0020)", - vr: "AT", - vm: "1-n", - name: "DataElementsSigned", - }, - "(0400,0100)": { - tag: "(0400,0100)", - vr: "UI", - vm: "1", - name: "DigitalSignatureUID", - }, - "(0400,0105)": { - tag: "(0400,0105)", - vr: "DT", - vm: "1", - name: "DigitalSignatureDateTime", - }, - "(0400,0110)": { - tag: "(0400,0110)", - vr: "CS", - vm: "1", - name: "CertificateType", - }, - "(0400,0115)": { - tag: "(0400,0115)", - vr: "OB", - vm: "1", - name: "CertificateOfSigner", - }, - "(0400,0120)": { tag: "(0400,0120)", vr: "OB", vm: "1", name: "Signature" }, - "(0400,0305)": { - tag: "(0400,0305)", - vr: "CS", - vm: "1", - name: "CertifiedTimestampType", - }, - "(0400,0310)": { - tag: "(0400,0310)", - vr: "OB", - vm: "1", - name: "CertifiedTimestamp", - }, - "(0400,0315)": { tag: "(0400,0315)", vr: "FL", vm: "1", name: "" }, - "(0400,0401)": { - tag: "(0400,0401)", - vr: "SQ", - vm: "1", - name: "DigitalSignaturePurposeCodeSequence", - }, - "(0400,0402)": { - tag: "(0400,0402)", - vr: "SQ", - vm: "1", - name: "ReferencedDigitalSignatureSequence", - }, - "(0400,0403)": { - tag: "(0400,0403)", - vr: "SQ", - vm: "1", - name: "ReferencedSOPInstanceMACSequence", - }, - "(0400,0404)": { tag: "(0400,0404)", vr: "OB", vm: "1", name: "MAC" }, - "(0400,0500)": { - tag: "(0400,0500)", - vr: "SQ", - vm: "1", - name: "EncryptedAttributesSequence", - }, - "(0400,0510)": { - tag: "(0400,0510)", - vr: "UI", - vm: "1", - name: "EncryptedContentTransferSyntaxUID", - }, - "(0400,0520)": { - tag: "(0400,0520)", - vr: "OB", - vm: "1", - name: "EncryptedContent", - }, - "(0400,0550)": { - tag: "(0400,0550)", - vr: "SQ", - vm: "1", - name: "ModifiedAttributesSequence", - }, - "(0400,0551)": { - tag: "(0400,0551)", - vr: "SQ", - vm: "1", - name: "NonconformingModifiedAttributesSequence", - }, - "(0400,0552)": { - tag: "(0400,0552)", - vr: "OB", - vm: "1", - name: "NonconformingDataElementValue", - }, - "(0400,0561)": { - tag: "(0400,0561)", - vr: "SQ", - vm: "1", - name: "OriginalAttributesSequence", - }, - "(0400,0562)": { - tag: "(0400,0562)", - vr: "DT", - vm: "1", - name: "AttributeModificationDateTime", - }, - "(0400,0563)": { - tag: "(0400,0563)", - vr: "LO", - vm: "1", - name: "ModifyingSystem", - }, - "(0400,0564)": { - tag: "(0400,0564)", - vr: "LO", - vm: "1", - name: "SourceOfPreviousValues", - }, - "(0400,0565)": { - tag: "(0400,0565)", - vr: "CS", - vm: "1", - name: "ReasonForTheAttributeModification", - }, - "(0400,0600)": { - tag: "(0400,0600)", - vr: "CS", - vm: "1", - name: "InstanceOriginStatus", - }, - "(1000,xxx0)": { - tag: "(1000,xxx0)", - vr: "US", - vm: "3", - name: "EscapeTriplet", - }, - "(1000,xxx1)": { - tag: "(1000,xxx1)", - vr: "US", - vm: "3", - name: "RunLengthTriplet", - }, - "(1000,xxx2)": { - tag: "(1000,xxx2)", - vr: "US", - vm: "1", - name: "HuffmanTableSize", - }, - "(1000,xxx3)": { - tag: "(1000,xxx3)", - vr: "US", - vm: "3", - name: "HuffmanTableTriplet", - }, - "(1000,xxx4)": { - tag: "(1000,xxx4)", - vr: "US", - vm: "1", - name: "ShiftTableSize", - }, - "(1000,xxx5)": { - tag: "(1000,xxx5)", - vr: "US", - vm: "3", - name: "ShiftTableTriplet", - }, - "(1010,xxxx)": { tag: "(1010,xxxx)", vr: "US", vm: "1-n", name: "ZonalMap" }, - "(2000,0010)": { - tag: "(2000,0010)", - vr: "IS", - vm: "1", - name: "NumberOfCopies", - }, - "(2000,001E)": { - tag: "(2000,001E)", - vr: "SQ", - vm: "1", - name: "PrinterConfigurationSequence", - }, - "(2000,0020)": { - tag: "(2000,0020)", - vr: "CS", - vm: "1", - name: "PrintPriority", - }, - "(2000,0030)": { tag: "(2000,0030)", vr: "CS", vm: "1", name: "MediumType" }, - "(2000,0040)": { - tag: "(2000,0040)", - vr: "CS", - vm: "1", - name: "FilmDestination", - }, - "(2000,0050)": { - tag: "(2000,0050)", - vr: "LO", - vm: "1", - name: "FilmSessionLabel", - }, - "(2000,0060)": { - tag: "(2000,0060)", - vr: "IS", - vm: "1", - name: "MemoryAllocation", - }, - "(2000,0061)": { - tag: "(2000,0061)", - vr: "IS", - vm: "1", - name: "MaximumMemoryAllocation", - }, - "(2000,0062)": { - tag: "(2000,0062)", - vr: "CS", - vm: "1", - name: "ColorImagePrintingFlag", - }, - "(2000,0063)": { - tag: "(2000,0063)", - vr: "CS", - vm: "1", - name: "CollationFlag", - }, - "(2000,0065)": { - tag: "(2000,0065)", - vr: "CS", - vm: "1", - name: "AnnotationFlag", - }, - "(2000,0067)": { - tag: "(2000,0067)", - vr: "CS", - vm: "1", - name: "ImageOverlayFlag", - }, - "(2000,0069)": { - tag: "(2000,0069)", - vr: "CS", - vm: "1", - name: "PresentationLUTFlag", - }, - "(2000,006A)": { - tag: "(2000,006A)", - vr: "CS", - vm: "1", - name: "ImageBoxPresentationLUTFlag", - }, - "(2000,00A0)": { - tag: "(2000,00A0)", - vr: "US", - vm: "1", - name: "MemoryBitDepth", - }, - "(2000,00A1)": { - tag: "(2000,00A1)", - vr: "US", - vm: "1", - name: "PrintingBitDepth", - }, - "(2000,00A2)": { - tag: "(2000,00A2)", - vr: "SQ", - vm: "1", - name: "MediaInstalledSequence", - }, - "(2000,00A4)": { - tag: "(2000,00A4)", - vr: "SQ", - vm: "1", - name: "OtherMediaAvailableSequence", - }, - "(2000,00A8)": { - tag: "(2000,00A8)", - vr: "SQ", - vm: "1", - name: "SupportedImageDisplayFormatsSequence", - }, - "(2000,0500)": { - tag: "(2000,0500)", - vr: "SQ", - vm: "1", - name: "ReferencedFilmBoxSequence", - }, - "(2000,0510)": { - tag: "(2000,0510)", - vr: "SQ", - vm: "1", - name: "ReferencedStoredPrintSequence", - }, - "(2010,0010)": { - tag: "(2010,0010)", - vr: "ST", - 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}, - "(3008,0130)": { - tag: "(3008,0130)", - vr: "SQ", - vm: "1", - name: "RecordedChannelSequence", - }, - "(3008,0132)": { - tag: "(3008,0132)", - vr: "DS", - vm: "1", - name: "SpecifiedChannelTotalTime", - }, - "(3008,0134)": { - tag: "(3008,0134)", - vr: "DS", - vm: "1", - name: "DeliveredChannelTotalTime", - }, - "(3008,0136)": { - tag: "(3008,0136)", - vr: "IS", - vm: "1", - name: "SpecifiedNumberOfPulses", - }, - "(3008,0138)": { - tag: "(3008,0138)", - vr: "IS", - vm: "1", - name: "DeliveredNumberOfPulses", - }, - "(3008,013A)": { - tag: "(3008,013A)", - vr: "DS", - vm: "1", - name: "SpecifiedPulseRepetitionInterval", - }, - "(3008,013C)": { - tag: "(3008,013C)", - vr: "DS", - vm: "1", - name: "DeliveredPulseRepetitionInterval", - }, - "(3008,0140)": { - tag: "(3008,0140)", - vr: "SQ", - vm: "1", - name: "RecordedSourceApplicatorSequence", - }, - "(3008,0142)": { - tag: "(3008,0142)", - vr: "IS", - vm: "1", - name: "ReferencedSourceApplicatorNumber", - }, - "(3008,0150)": { - tag: "(3008,0150)", - vr: "SQ", - vm: "1", - name: "RecordedChannelShieldSequence", - }, - "(3008,0152)": { - tag: "(3008,0152)", - vr: "IS", - vm: "1", - name: "ReferencedChannelShieldNumber", - }, - "(3008,0160)": { - tag: "(3008,0160)", - vr: "SQ", - vm: "1", - name: "BrachyControlPointDeliveredSequence", - }, - "(3008,0162)": { - tag: "(3008,0162)", - vr: "DA", - vm: "1", - name: "SafePositionExitDate", - }, - "(3008,0164)": { - tag: "(3008,0164)", - vr: "TM", - vm: "1", - name: "SafePositionExitTime", - }, - "(3008,0166)": { - tag: "(3008,0166)", - vr: "DA", - vm: "1", - name: "SafePositionReturnDate", - }, - "(3008,0168)": { - tag: "(3008,0168)", - vr: "TM", - vm: "1", - name: "SafePositionReturnTime", - }, - "(3008,0171)": { - tag: "(3008,0171)", - vr: "SQ", - vm: "1", - name: "PulseSpecificBrachyControlPointDeliveredSequence", - }, - "(3008,0172)": { tag: "(3008,0172)", vr: "US", vm: "1", name: "PulseNumber" }, - "(3008,0173)": { - tag: "(3008,0173)", - vr: "SQ", - vm: "1", - name: "BrachyPulseControlPointDeliveredSequence", - }, - "(3008,0200)": { - tag: "(3008,0200)", - vr: "CS", - vm: "1", - name: "CurrentTreatmentStatus", - }, - "(3008,0202)": { - tag: "(3008,0202)", - vr: "ST", - vm: "1", - name: "TreatmentStatusComment", - }, - "(3008,0220)": { - tag: "(3008,0220)", - vr: "SQ", - vm: "1", - name: "FractionGroupSummarySequence", - }, - "(3008,0223)": { - tag: "(3008,0223)", - vr: "IS", - vm: "1", - name: "ReferencedFractionNumber", - }, - "(3008,0224)": { - tag: "(3008,0224)", - vr: "CS", - vm: "1", - name: "FractionGroupType", - }, - "(3008,0230)": { - tag: "(3008,0230)", - vr: "CS", - vm: "1", - name: "BeamStopperPosition", - }, - "(3008,0240)": { - tag: "(3008,0240)", - vr: "SQ", - vm: "1", - name: "FractionStatusSummarySequence", - }, - "(3008,0250)": { - tag: "(3008,0250)", - vr: "DA", - vm: "1", - name: "TreatmentDate", - }, - "(3008,0251)": { - tag: "(3008,0251)", - vr: "TM", - vm: "1", - name: "TreatmentTime", - }, - "(300A,0002)": { tag: "(300A,0002)", vr: "SH", vm: "1", name: "RTPlanLabel" }, - 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}, - "(5400,0100)": { - tag: "(5400,0100)", - vr: "SQ", - vm: "1", - name: "WaveformSequence", - }, - "(5400,0110)": { - tag: "(5400,0110)", - vr: "OB|OW", - vm: "1", - name: "ChannelMinimumValue", - }, - "(5400,0112)": { - tag: "(5400,0112)", - vr: "OB|OW", - vm: "1", - name: "ChannelMaximumValue", - }, - "(5400,1004)": { - tag: "(5400,1004)", - vr: "US", - vm: "1", - name: "WaveformBitsAllocated", - }, - "(5400,1006)": { - tag: "(5400,1006)", - vr: "CS", - vm: "1", - name: "WaveformSampleInterpretation", - }, - "(5400,100A)": { - tag: "(5400,100A)", - vr: "OB|OW", - vm: "1", - name: "WaveformPaddingValue", - }, - "(5400,1010)": { - tag: "(5400,1010)", - vr: "OB|OW", - vm: "1", - name: "WaveformData", - }, - "(5600,0010)": { - tag: "(5600,0010)", - vr: "OF", - vm: "1", - name: "FirstOrderPhaseCorrectionAngle", - }, - "(5600,0020)": { - tag: "(5600,0020)", - vr: "OF", - vm: "1", - name: "SpectroscopyData", - }, - "(60xx,0010)": { tag: "(60xx,0010)", vr: "US", vm: "1", name: "OverlayRows" }, - "(60xx,0011)": { - tag: "(60xx,0011)", - vr: "US", - vm: "1", - name: "OverlayColumns", - }, - "(60xx,0012)": { - tag: "(60xx,0012)", - vr: "US", - vm: "1", - name: "OverlayPlanes", - }, - "(60xx,0015)": { - tag: "(60xx,0015)", - vr: "IS", - vm: "1", - name: "NumberOfFramesInOverlay", - }, - "(60xx,0022)": { - tag: "(60xx,0022)", - vr: "LO", - vm: "1", - name: "OverlayDescription", - }, - "(60xx,0040)": { tag: "(60xx,0040)", vr: "CS", vm: "1", name: "OverlayType" }, - "(60xx,0045)": { - tag: "(60xx,0045)", - vr: "LO", - vm: "1", - name: "OverlaySubtype", - }, - "(60xx,0050)": { - tag: "(60xx,0050)", - vr: "SS", - vm: "2", - name: "OverlayOrigin", - }, - "(60xx,0051)": { - tag: "(60xx,0051)", - vr: "US", - vm: "1", - name: "ImageFrameOrigin", - }, - "(60xx,0052)": { - tag: "(60xx,0052)", - vr: "US", - vm: "1", - name: "OverlayPlaneOrigin", - }, - "(60xx,0060)": { - tag: "(60xx,0060)", - vr: "CS", - vm: "1", - name: "OverlayCompressionCode", - }, - "(60xx,0061)": { - tag: "(60xx,0061)", - vr: "SH", - vm: "1", - name: "OverlayCompressionOriginator", - }, - "(60xx,0062)": { - tag: "(60xx,0062)", - vr: "SH", - vm: "1", - name: "OverlayCompressionLabel", - }, - "(60xx,0063)": { - tag: "(60xx,0063)", - vr: "CS", - vm: "1", - name: "OverlayCompressionDescription", - }, - "(60xx,0066)": { - tag: "(60xx,0066)", - vr: "AT", - vm: "1-n", - name: "OverlayCompressionStepPointers", - }, - "(60xx,0068)": { - tag: "(60xx,0068)", - vr: "US", - vm: "1", - name: "OverlayRepeatInterval", - }, - "(60xx,0069)": { - tag: "(60xx,0069)", - vr: "US", - vm: "1", - name: "OverlayBitsGrouped", - }, - "(60xx,0100)": { - tag: "(60xx,0100)", - vr: "US", - vm: "1", - name: "OverlayBitsAllocated", - }, - "(60xx,0102)": { - tag: "(60xx,0102)", - vr: "US", - vm: "1", - name: "OverlayBitPosition", - }, - "(60xx,0110)": { - tag: "(60xx,0110)", - vr: "CS", - vm: "1", - name: "OverlayFormat", - }, - "(60xx,0200)": { - tag: "(60xx,0200)", - vr: "US", - vm: "1", - name: "OverlayLocation", - }, - "(60xx,0800)": { - tag: "(60xx,0800)", - vr: "CS", - vm: "1-n", - name: "OverlayCodeLabel", - }, - "(60xx,0802)": { - tag: "(60xx,0802)", - vr: "US", - vm: "1", - name: "OverlayNumberOfTables", - }, - "(60xx,0803)": { - tag: "(60xx,0803)", - vr: "AT", - vm: "1-n", - name: "OverlayCodeTableLocation", - }, - "(60xx,0804)": { - tag: "(60xx,0804)", - vr: "US", - vm: "1", - name: "OverlayBitsForCodeWord", - }, - "(60xx,1001)": { - tag: "(60xx,1001)", - vr: "CS", - vm: "1", - name: "OverlayActivationLayer", - }, - "(60xx,1100)": { - tag: "(60xx,1100)", - vr: "US", - vm: "1", - name: "OverlayDescriptorGray", - }, - "(60xx,1101)": { - tag: "(60xx,1101)", - vr: "US", - vm: "1", - name: "OverlayDescriptorRed", - }, - "(60xx,1102)": { - tag: "(60xx,1102)", - vr: "US", - vm: "1", - name: "OverlayDescriptorGreen", - }, - "(60xx,1103)": { - tag: "(60xx,1103)", - vr: "US", - vm: "1", - name: "OverlayDescriptorBlue", - }, - "(60xx,1200)": { - tag: "(60xx,1200)", - vr: "US", - vm: "1-n", - name: "OverlaysGray", - }, - "(60xx,1201)": { - tag: "(60xx,1201)", - vr: "US", - vm: "1-n", - name: "OverlaysRed", - }, - "(60xx,1202)": { - tag: "(60xx,1202)", - vr: "US", - vm: "1-n", - name: "OverlaysGreen", - }, - "(60xx,1203)": { - tag: "(60xx,1203)", - vr: "US", - vm: "1-n", - name: "OverlaysBlue", - }, - "(60xx,1301)": { tag: "(60xx,1301)", vr: "IS", vm: "1", name: "ROIArea" }, - "(60xx,1302)": { tag: "(60xx,1302)", vr: "DS", vm: "1", name: "ROIMean" }, - "(60xx,1303)": { - tag: "(60xx,1303)", - vr: "DS", - vm: "1", - name: "ROIStandardDeviation", - }, - "(60xx,1500)": { - tag: "(60xx,1500)", - vr: "LO", - vm: "1", - name: "OverlayLabel", - }, - "(60xx,3000)": { - tag: "(60xx,3000)", - vr: "OB|OW", - vm: "1", - name: "OverlayData", - }, - "(60xx,4000)": { - tag: "(60xx,4000)", - vr: "LT", - vm: "1", - name: "OverlayComments", - }, - "(7FE0,0001)": { - tag: "(7FE0,0001)", - vr: "OV", - vm: "1", - name: "ExtendedOffsetTable", - }, - "(7FE0,0002)": { - tag: "(7FE0,0002)", - vr: "OV", - vm: "1", - name: "ExtendedOffsetTableLengths", - }, - "(7FE0,0008)": { - tag: "(7FE0,0008)", - vr: "OF", - vm: "1", - name: "FloatPixelData", - }, - "(7FE0,0009)": { - tag: "(7FE0,0009)", - vr: "OD", - vm: "1", - name: "DoubleFloatPixelData", - }, - "(7FE0,0010)": { - tag: "(7FE0,0010)", - vr: "OB|OW", - vm: "1", - name: "PixelData", - }, - "(7FE0,0020)": { - tag: "(7FE0,0020)", - vr: "OW", - vm: "1", - name: "CoefficientsSDVN", - }, - "(7FE0,0030)": { - tag: "(7FE0,0030)", - vr: "OW", - vm: "1", - name: "CoefficientsSDHN", - }, - "(7FE0,0040)": { - tag: "(7FE0,0040)", - vr: "OW", - vm: "1", - name: "CoefficientsSDDN", - }, - "(7Fxx,0010)": { - tag: "(7Fxx,0010)", - vr: "OB|OW", - vm: "1", - name: "VariablePixelData", - }, - "(7Fxx,0011)": { - tag: "(7Fxx,0011)", - vr: "US", - vm: "1", - name: "VariableNextDataGroup", - }, - "(7Fxx,0020)": { - tag: "(7Fxx,0020)", - vr: "OW", - vm: "1", - name: "VariableCoefficientsSDVN", - }, - "(7Fxx,0030)": { - tag: "(7Fxx,0030)", - vr: "OW", - vm: "1", - name: "VariableCoefficientsSDHN", - }, - "(7Fxx,0040)": { - tag: "(7Fxx,0040)", - vr: "OW", - vm: "1", - name: "VariableCoefficientsSDDN", - }, - "(FFFA,FFFA)": { - tag: "(FFFA,FFFA)", - vr: "SQ", - vm: "1", - name: "DigitalSignaturesSequence", - }, - "(FFFC,FFFC)": { - tag: "(FFFC,FFFC)", - vr: "OB", - vm: "1", - name: "DataSetTrailingPadding", - }, - "(FFFE,E000)": { tag: "(FFFE,E000)", vr: "", vm: "1", name: "Item" }, - "(FFFE,E00D)": { - tag: "(FFFE,E00D)", - vr: "", - vm: "1", - name: "ItemDelimitationItem", - }, - "(FFFE,E0DD)": { - tag: "(FFFE,E0DD)", - vr: "", - vm: "1", - name: "SequenceDelimitationItem", - }, -}; - -export const uids = { - "1.2.840.10008.1.1": "Verification SOP Class", - "1.2.840.10008.1.2": - "Implicit VR Little Endian: Default Transfer Syntax for DICOM", - "1.2.840.10008.1.2.1": "Explicit VR Little Endian", - "1.2.840.10008.1.2.1.99": "Deflated Explicit VR Little Endian", - "1.2.840.10008.1.2.2": "Explicit VR Big Endian (Retired)", - "1.2.840.10008.1.2.4.50": - "JPEG Baseline (Process 1): Default Transfer Syntax for Lossy JPEG 8 Bit Image Compression", - "1.2.840.10008.1.2.4.51": - "JPEG Extended (Process 2 & 4): Default Transfer Syntax for Lossy JPEG 12 Bit Image Compression (Process 4 only)", - "1.2.840.10008.1.2.4.52": "JPEG Extended (Process 3 & 5) (Retired)", - "1.2.840.10008.1.2.4.53": - "JPEG Spectral Selection, Non-Hierarchical (Process 6 & 8) (Retired)", - "1.2.840.10008.1.2.4.54": - "JPEG Spectral Selection, Non-Hierarchical (Process 7 & 9) (Retired)", - "1.2.840.10008.1.2.4.55": - "JPEG Full Progression, Non-Hierarchical (Process 10 & 12) (Retired)", - "1.2.840.10008.1.2.4.56": - "JPEG Full Progression, Non-Hierarchical (Process 11 & 13) (Retired)", - "1.2.840.10008.1.2.4.57": "JPEG Lossless, Non-Hierarchical (Process 14)", - "1.2.840.10008.1.2.4.58": - "JPEG Lossless, Non-Hierarchical (Process 15) (Retired)", - "1.2.840.10008.1.2.4.59": - "JPEG Extended, Hierarchical (Process 16 & 18) (Retired)", - "1.2.840.10008.1.2.4.60": - "JPEG Extended, Hierarchical (Process 17 & 19) (Retired)", - "1.2.840.10008.1.2.4.61": - "JPEG Spectral Selection, Hierarchical (Process 20 & 22) (Retired)", - "1.2.840.10008.1.2.4.62": - "JPEG Spectral Selection, Hierarchical (Process 21 & 23) (Retired)", - "1.2.840.10008.1.2.4.63": - "JPEG Full Progression, Hierarchical (Process 24 & 26) (Retired)", - "1.2.840.10008.1.2.4.64": - "JPEG Full Progression, Hierarchical (Process 25 & 27) (Retired)", - "1.2.840.10008.1.2.4.65": - "JPEG Lossless, Hierarchical (Process 28) (Retired)", - "1.2.840.10008.1.2.4.66": - "JPEG Lossless, Hierarchical (Process 29) (Retired)", - "1.2.840.10008.1.2.4.70": - "JPEG Lossless, Non-Hierarchical, First-Order Prediction (Process 14 [Selection Value 1]): Default Transfer Syntax for Lossless JPEG Image Compression", - "1.2.840.10008.1.2.4.80": "JPEG-LS Lossless Image Compression", - "1.2.840.10008.1.2.4.81": "JPEG-LS Lossy (Near-Lossless) Image Compression", - "1.2.840.10008.1.2.4.90": "JPEG 2000 Image Compression (Lossless Only)", - "1.2.840.10008.1.2.4.91": "JPEG 2000 Image Compression", - "1.2.840.10008.1.2.4.92": - "JPEG 2000 Part 2 Multi-component Image Compression (Lossless Only)", - "1.2.840.10008.1.2.4.93": - "JPEG 2000 Part 2 Multi-component Image Compression", - "1.2.840.10008.1.2.4.94": "JPIP Referenced", - "1.2.840.10008.1.2.4.95": "JPIP Referenced Deflate", - "1.2.840.10008.1.2.4.100": "MPEG2 Main Profile @ Main Level", - "1.2.840.10008.1.2.4.101": "MPEG2 Main Profile @ High Level", - "1.2.840.10008.1.2.4.102": "MPEG-4 AVC/H.264 High Profile / Level 4.1", - "1.2.840.10008.1.2.4.103": - "MPEG-4 AVC/H.264 BD-compatible High Profile / Level 4.1", - "1.2.840.10008.1.2.4.104": - "MPEG-4 AVC/H.264 High Profile / Level 4.2 For 2D Video", - "1.2.840.10008.1.2.4.105": - "MPEG-4 AVC/H.264 High Profile / Level 4.2 For 3D Video", - "1.2.840.10008.1.2.4.106": "MPEG-4 AVC/H.264 Stereo High Profile / Level 4.2", - "1.2.840.10008.1.2.5": "RLE Lossless", - "1.2.840.10008.1.2.6.1": "RFC 2557 MIME encapsulation", - "1.2.840.10008.1.2.6.2": "XML Encoding", - "1.2.840.10008.1.3.10": "Media Storage Directory Storage", - "1.2.840.10008.1.4.1.1": "Talairach Brain Atlas Frame of Reference", - "1.2.840.10008.1.4.1.2": "SPM2 T1 Frame of Reference", - "1.2.840.10008.1.4.1.3": "SPM2 T2 Frame of Reference", - "1.2.840.10008.1.4.1.4": "SPM2 PD Frame of Reference", - "1.2.840.10008.1.4.1.5": "SPM2 EPI Frame of Reference", - "1.2.840.10008.1.4.1.6": "SPM2 FIL T1 Frame of Reference", - "1.2.840.10008.1.4.1.7": "SPM2 PET Frame of Reference", - "1.2.840.10008.1.4.1.8": "SPM2 TRANSM Frame of Reference", - "1.2.840.10008.1.4.1.9": "SPM2 SPECT Frame of Reference", - "1.2.840.10008.1.4.1.10": "SPM2 GRAY Frame of Reference", - "1.2.840.10008.1.4.1.11": "SPM2 WHITE Frame of Reference", - "1.2.840.10008.1.4.1.12": "SPM2 CSF Frame of Reference", - "1.2.840.10008.1.4.1.13": "SPM2 BRAINMASK Frame of Reference", - "1.2.840.10008.1.4.1.14": "SPM2 AVG305T1 Frame of Reference", - "1.2.840.10008.1.4.1.15": "SPM2 AVG152T1 Frame of Reference", - "1.2.840.10008.1.4.1.16": "SPM2 AVG152T2 Frame of Reference", - "1.2.840.10008.1.4.1.17": "SPM2 AVG152PD Frame of Reference", - "1.2.840.10008.1.4.1.18": "SPM2 SINGLESUBJT1 Frame of Reference", - "1.2.840.10008.1.4.2.1": "ICBM 452 T1 Frame of Reference", - "1.2.840.10008.1.4.2.2": "ICBM Single Subject MRI Frame of Reference", - "1.2.840.10008.1.5.1": "Hot Iron Color Palette SOP Instance", - "1.2.840.10008.1.5.2": "PET Color Palette SOP Instance", - "1.2.840.10008.1.5.3": "Hot Metal Blue Color Palette SOP Instance", - "1.2.840.10008.1.5.4": "PET 20 Step Color Palette SOP Instance", - "1.2.840.10008.1.9": "Basic Study Content Notification SOP Class (Retired)", - "1.2.840.10008.1.20.1": "Storage Commitment Push Model SOP Class", - "1.2.840.10008.1.20.1.1": "Storage Commitment Push Model SOP Instance", - "1.2.840.10008.1.20.2": "Storage Commitment Pull Model SOP Class (Retired)", - "1.2.840.10008.1.20.2.1": - "Storage Commitment Pull Model SOP Instance (Retired)", - "1.2.840.10008.1.40": "Procedural Event Logging SOP Class", - "1.2.840.10008.1.40.1": "Procedural Event Logging SOP Instance", - "1.2.840.10008.1.42": "Substance Administration Logging SOP Class", - "1.2.840.10008.1.42.1": "Substance Administration Logging SOP Instance", - "1.2.840.10008.2.6.1": "DICOM UID Registry", - "1.2.840.10008.2.16.4": "DICOM Controlled Terminology", - "1.2.840.10008.3.1.1.1": "DICOM Application Context Name", - "1.2.840.10008.3.1.2.1.1": "Detached Patient Management SOP Class (Retired)", - "1.2.840.10008.3.1.2.1.4": - "Detached Patient Management Meta SOP Class (Retired)", - "1.2.840.10008.3.1.2.2.1": "Detached Visit Management SOP Class (Retired)", - "1.2.840.10008.3.1.2.3.1": "Detached Study Management SOP Class (Retired)", - "1.2.840.10008.3.1.2.3.2": "Study Component Management SOP Class (Retired)", - "1.2.840.10008.3.1.2.3.3": "Modality Performed Procedure Step SOP Class", - "1.2.840.10008.3.1.2.3.4": - "Modality Performed Procedure Step Retrieve SOP Class", - "1.2.840.10008.3.1.2.3.5": - "Modality Performed Procedure Step Notification SOP Class", - "1.2.840.10008.3.1.2.5.1": "Detached Results Management SOP Class (Retired)", - "1.2.840.10008.3.1.2.5.4": - "Detached Results Management Meta SOP Class (Retired)", - "1.2.840.10008.3.1.2.5.5": - "Detached Study Management Meta SOP Class (Retired)", - "1.2.840.10008.3.1.2.6.1": - "Detached Interpretation Management SOP Class (Retired)", - "1.2.840.10008.4.2": "Storage Service Class", - "1.2.840.10008.5.1.1.1": "Basic Film Session SOP Class", - "1.2.840.10008.5.1.1.2": "Basic Film Box SOP Class", - "1.2.840.10008.5.1.1.4": "Basic Grayscale Image Box SOP Class", - "1.2.840.10008.5.1.1.4.1": "Basic Color Image Box SOP Class", - "1.2.840.10008.5.1.1.4.2": "Referenced Image Box SOP Class (Retired)", - "1.2.840.10008.5.1.1.9": "Basic Grayscale Print Management Meta SOP Class", - "1.2.840.10008.5.1.1.9.1": - "Referenced Grayscale Print Management Meta SOP Class (Retired)", - "1.2.840.10008.5.1.1.14": "Print Job SOP Class", - "1.2.840.10008.5.1.1.15": "Basic Annotation Box SOP Class", - "1.2.840.10008.5.1.1.16": "Printer SOP Class", - "1.2.840.10008.5.1.1.16.376": "Printer Configuration Retrieval SOP Class", - "1.2.840.10008.5.1.1.17": "Printer SOP Instance", - "1.2.840.10008.5.1.1.17.376": "Printer Configuration Retrieval SOP Instance", - "1.2.840.10008.5.1.1.18": "Basic Color Print Management Meta SOP Class", - "1.2.840.10008.5.1.1.18.1": - "Referenced Color Print Management Meta SOP Class (Retired)", - "1.2.840.10008.5.1.1.22": "VOI LUT Box SOP Class", - "1.2.840.10008.5.1.1.23": "Presentation LUT SOP Class", - "1.2.840.10008.5.1.1.24": "Image Overlay Box SOP Class (Retired)", - "1.2.840.10008.5.1.1.24.1": - "Basic Print Image Overlay Box SOP Class (Retired)", - "1.2.840.10008.5.1.1.25": "Print Queue SOP Instance (Retired)", - "1.2.840.10008.5.1.1.26": "Print Queue Management SOP Class (Retired)", - "1.2.840.10008.5.1.1.27": "Stored Print Storage SOP Class (Retired)", - "1.2.840.10008.5.1.1.29": - "Hardcopy Grayscale Image Storage SOP Class (Retired)", - "1.2.840.10008.5.1.1.30": "Hardcopy Color Image Storage SOP Class (Retired)", - "1.2.840.10008.5.1.1.31": "Pull Print Request SOP Class (Retired)", - "1.2.840.10008.5.1.1.32": - "Pull Stored Print Management Meta SOP Class (Retired)", - "1.2.840.10008.5.1.1.33": "Media Creation Management SOP Class UID", - "1.2.840.10008.5.1.1.40": "Display System SOP Class", - "1.2.840.10008.5.1.1.40.1": "Display System SOP Instance", - "1.2.840.10008.5.1.4.1.1.1": "Computed Radiography Image Storage", - "1.2.840.10008.5.1.4.1.1.1.1": - "Digital X-Ray Image Storage - For Presentation", - "1.2.840.10008.5.1.4.1.1.1.1.1": - "Digital X-Ray Image Storage - For Processing", - "1.2.840.10008.5.1.4.1.1.1.2": - "Digital Mammography X-Ray Image Storage - For Presentation", - "1.2.840.10008.5.1.4.1.1.1.2.1": - "Digital Mammography X-Ray Image Storage - For Processing", - "1.2.840.10008.5.1.4.1.1.1.3": - "Digital Intra-Oral X-Ray Image Storage - For Presentation", - "1.2.840.10008.5.1.4.1.1.1.3.1": - "Digital Intra-Oral X-Ray Image Storage - For Processing", - "1.2.840.10008.5.1.4.1.1.2": "CT Image Storage", - "1.2.840.10008.5.1.4.1.1.2.1": "Enhanced CT Image Storage", - "1.2.840.10008.5.1.4.1.1.2.2": "Legacy Converted Enhanced CT Image Storage", - "1.2.840.10008.5.1.4.1.1.3": "Ultrasound Multi-frame Image Storage (Retired)", - "1.2.840.10008.5.1.4.1.1.3.1": "Ultrasound Multi-frame Image Storage", - "1.2.840.10008.5.1.4.1.1.4": "MR Image Storage", - "1.2.840.10008.5.1.4.1.1.4.1": "Enhanced MR Image Storage", - "1.2.840.10008.5.1.4.1.1.4.2": "MR Spectroscopy Storage", - "1.2.840.10008.5.1.4.1.1.4.3": "Enhanced MR Color Image Storage", - "1.2.840.10008.5.1.4.1.1.4.4": "Legacy Converted Enhanced MR Image Storage", - "1.2.840.10008.5.1.4.1.1.5": "Nuclear Medicine Image Storage (Retired)", - "1.2.840.10008.5.1.4.1.1.6": "Ultrasound Image Storage (Retired)", - "1.2.840.10008.5.1.4.1.1.6.1": "Ultrasound Image Storage", - "1.2.840.10008.5.1.4.1.1.6.2": "Enhanced US Volume Storage", - "1.2.840.10008.5.1.4.1.1.7": "Secondary Capture Image Storage", - "1.2.840.10008.5.1.4.1.1.7.1": - "Multi-frame Single Bit Secondary Capture Image Storage", - "1.2.840.10008.5.1.4.1.1.7.2": - "Multi-frame Grayscale Byte Secondary Capture Image Storage", - "1.2.840.10008.5.1.4.1.1.7.3": - "Multi-frame Grayscale Word Secondary Capture Image Storage", - "1.2.840.10008.5.1.4.1.1.7.4": - "Multi-frame True Color Secondary Capture Image Storage", - "1.2.840.10008.5.1.4.1.1.8": "Standalone Overlay Storage (Retired)", - "1.2.840.10008.5.1.4.1.1.9": "Standalone Curve Storage (Retired)", - "1.2.840.10008.5.1.4.1.1.9.1": "Waveform Storage - Trial (Retired)", - "1.2.840.10008.5.1.4.1.1.9.1.1": "12-lead ECG Waveform Storage", - "1.2.840.10008.5.1.4.1.1.9.1.2": "General ECG Waveform Storage", - "1.2.840.10008.5.1.4.1.1.9.1.3": "Ambulatory ECG Waveform Storage", - "1.2.840.10008.5.1.4.1.1.9.2.1": "Hemodynamic Waveform Storage", - "1.2.840.10008.5.1.4.1.1.9.3.1": "Cardiac Electrophysiology Waveform Storage", - "1.2.840.10008.5.1.4.1.1.9.4.1": "Basic Voice Audio Waveform Storage", - "1.2.840.10008.5.1.4.1.1.9.4.2": "General Audio Waveform Storage", - "1.2.840.10008.5.1.4.1.1.9.5.1": "Arterial Pulse Waveform Storage", - "1.2.840.10008.5.1.4.1.1.9.6.1": "Respiratory Waveform Storage", - "1.2.840.10008.5.1.4.1.1.10": "Standalone Modality LUT Storage (Retired)", - "1.2.840.10008.5.1.4.1.1.11": "Standalone VOI LUT Storage (Retired)", - "1.2.840.10008.5.1.4.1.1.11.1": - "Grayscale Softcopy Presentation State Storage SOP Class", - "1.2.840.10008.5.1.4.1.1.11.2": - "Color Softcopy Presentation State Storage SOP Class", - "1.2.840.10008.5.1.4.1.1.11.3": - "Pseudo-Color Softcopy Presentation State Storage SOP Class", - "1.2.840.10008.5.1.4.1.1.11.4": - "Blending Softcopy Presentation State Storage SOP Class", - "1.2.840.10008.5.1.4.1.1.11.5": - "XA/XRF Grayscale Softcopy Presentation State Storage", - "1.2.840.10008.5.1.4.1.1.12.1": "X-Ray Angiographic Image Storage", - "1.2.840.10008.5.1.4.1.1.12.1.1": "Enhanced XA Image Storage", - "1.2.840.10008.5.1.4.1.1.12.2": "X-Ray Radiofluoroscopic Image Storage", - "1.2.840.10008.5.1.4.1.1.12.2.1": "Enhanced XRF Image Storage", - "1.2.840.10008.5.1.4.1.1.12.3": - "X-Ray Angiographic Bi-Plane Image Storage (Retired)", - "1.2.840.10008.5.1.4.1.1.13.1.1": "X-Ray 3D Angiographic Image Storage", - "1.2.840.10008.5.1.4.1.1.13.1.2": "X-Ray 3D Craniofacial Image Storage", - "1.2.840.10008.5.1.4.1.1.13.1.3": "Breast Tomosynthesis Image Storage", - "1.2.840.10008.5.1.4.1.1.13.1.4": - "Breast Projection X-Ray Image Storage - For Presentation", - "1.2.840.10008.5.1.4.1.1.13.1.5": - "Breast Projection X-Ray Image Storage - For Processing", - "1.2.840.10008.5.1.4.1.1.14.1": - "Intravascular Optical Coherence Tomography Image Storage - For Presentation", - "1.2.840.10008.5.1.4.1.1.14.2": - "Intravascular Optical Coherence Tomography Image Storage - For Processing", - "1.2.840.10008.5.1.4.1.1.20": "Nuclear Medicine Image Storage", - "1.2.840.10008.5.1.4.1.1.30": "Parametric Map Storage", - "1.2.840.10008.5.1.4.1.1.66": "Raw Data Storage", - "1.2.840.10008.5.1.4.1.1.66.1": "Spatial Registration Storage", - "1.2.840.10008.5.1.4.1.1.66.2": "Spatial Fiducials Storage", - "1.2.840.10008.5.1.4.1.1.66.3": "Deformable Spatial Registration Storage", - "1.2.840.10008.5.1.4.1.1.66.4": "Segmentation Storage", - "1.2.840.10008.5.1.4.1.1.66.5": "Surface Segmentation Storage", - "1.2.840.10008.5.1.4.1.1.67": "Real World Value Mapping Storage", - "1.2.840.10008.5.1.4.1.1.68.1": "Surface Scan Mesh Storage", - "1.2.840.10008.5.1.4.1.1.68.2": "Surface Scan Point Cloud Storage", - "1.2.840.10008.5.1.4.1.1.77.1": "VL Image Storage - Trial (Retired)", - "1.2.840.10008.5.1.4.1.1.77.2": - "VL Multi-frame Image Storage - Trial (Retired)", - "1.2.840.10008.5.1.4.1.1.77.1.1": "VL Endoscopic Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.1.1": "Video Endoscopic Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.2": "VL Microscopic Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.2.1": "Video Microscopic Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.3": - "VL Slide-Coordinates Microscopic Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.4": "VL Photographic Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.4.1": "Video Photographic Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.5.1": - "Ophthalmic Photography 8 Bit Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.5.2": - "Ophthalmic Photography 16 Bit Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.5.3": "Stereometric Relationship Storage", - "1.2.840.10008.5.1.4.1.1.77.1.5.4": "Ophthalmic Tomography Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.5.5": - "Wide Field Ophthalmic Photography Stereographic Projection Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.5.6": - "Wide Field Ophthalmic Photography 3D Coordinates Image Storage", - "1.2.840.10008.5.1.4.1.1.77.1.6": "VL Whole Slide Microscopy Image Storage", - "1.2.840.10008.5.1.4.1.1.78.1": "Lensometry Measurements Storage", - "1.2.840.10008.5.1.4.1.1.78.2": "Autorefraction Measurements Storage", - "1.2.840.10008.5.1.4.1.1.78.3": "Keratometry Measurements Storage", - "1.2.840.10008.5.1.4.1.1.78.4": "Subjective Refraction Measurements Storage", - "1.2.840.10008.5.1.4.1.1.78.5": "Visual Acuity Measurements Storage", - "1.2.840.10008.5.1.4.1.1.78.6": "Spectacle Prescription Report Storage", - "1.2.840.10008.5.1.4.1.1.78.7": "Ophthalmic Axial Measurements Storage", - "1.2.840.10008.5.1.4.1.1.78.8": "Intraocular Lens Calculations Storage", - "1.2.840.10008.5.1.4.1.1.79.1": - "Macular Grid Thickness and Volume Report Storage", - "1.2.840.10008.5.1.4.1.1.80.1": - "Ophthalmic Visual Field Static Perimetry Measurements Storage", - "1.2.840.10008.5.1.4.1.1.81.1": "Ophthalmic Thickness Map Storage", - "1.2.840.10008.5.1.4.1.1.82.1": "Corneal Topography Map Storage", - "1.2.840.10008.5.1.4.1.1.88.1": "Text SR Storage - Trial (Retired)", - "1.2.840.10008.5.1.4.1.1.88.2": "Audio SR Storage - Trial (Retired)", - "1.2.840.10008.5.1.4.1.1.88.3": "Detail SR Storage - Trial (Retired)", - "1.2.840.10008.5.1.4.1.1.88.4": "Comprehensive SR Storage - Trial (Retired)", - "1.2.840.10008.5.1.4.1.1.88.11": "Basic Text SR Storage", - "1.2.840.10008.5.1.4.1.1.88.22": "Enhanced SR Storage", - "1.2.840.10008.5.1.4.1.1.88.33": "Comprehensive SR Storage", - "1.2.840.10008.5.1.4.1.1.88.34": "Comprehensive 3D SR Storage", - "1.2.840.10008.5.1.4.1.1.88.35": "Extensible SR Storage", - "1.2.840.10008.5.1.4.1.1.88.40": "Procedure Log Storage", - "1.2.840.10008.5.1.4.1.1.88.50": "Mammography CAD SR Storage", - "1.2.840.10008.5.1.4.1.1.88.59": "Key Object Selection Document Storage", - "1.2.840.10008.5.1.4.1.1.88.65": "Chest CAD SR Storage", - "1.2.840.10008.5.1.4.1.1.88.67": "X-Ray Radiation Dose SR Storage", - "1.2.840.10008.5.1.4.1.1.88.68": - "Radiopharmaceutical Radiation Dose SR Storage", - "1.2.840.10008.5.1.4.1.1.88.69": "Colon CAD SR Storage", - "1.2.840.10008.5.1.4.1.1.88.70": "Implantation Plan SR Storage", - "1.2.840.10008.5.1.4.1.1.104.1": "Encapsulated PDF Storage", - "1.2.840.10008.5.1.4.1.1.104.2": "Encapsulated CDA Storage", - "1.2.840.10008.5.1.4.1.1.128": "Positron Emission Tomography Image Storage", - "1.2.840.10008.5.1.4.1.1.128.1": - "Legacy Converted Enhanced PET Image Storage", - "1.2.840.10008.5.1.4.1.1.129": "Standalone PET Curve Storage (Retired)", - "1.2.840.10008.5.1.4.1.1.130": "Enhanced PET Image Storage", - "1.2.840.10008.5.1.4.1.1.131": "Basic Structured Display Storage", - "1.2.840.10008.5.1.4.1.1.481.1": "RT Image Storage", - "1.2.840.10008.5.1.4.1.1.481.2": "RT Dose Storage", - "1.2.840.10008.5.1.4.1.1.481.3": "RT Structure Set Storage", - "1.2.840.10008.5.1.4.1.1.481.4": "RT Beams Treatment Record Storage", - "1.2.840.10008.5.1.4.1.1.481.5": "RT Plan Storage", - "1.2.840.10008.5.1.4.1.1.481.6": "RT Brachy Treatment Record Storage", - "1.2.840.10008.5.1.4.1.1.481.7": "RT Treatment Summary Record Storage", - "1.2.840.10008.5.1.4.1.1.481.8": "RT Ion Plan Storage", - "1.2.840.10008.5.1.4.1.1.481.9": "RT Ion Beams Treatment Record Storage", - "1.2.840.10008.5.1.4.1.1.501.1": "DICOS CT Image Storage", - "1.2.840.10008.5.1.4.1.1.501.2.1": - "DICOS Digital X-Ray Image Storage - For Presentation", - "1.2.840.10008.5.1.4.1.1.501.2.2": - "DICOS Digital X-Ray Image Storage - For Processing", - "1.2.840.10008.5.1.4.1.1.501.3": "DICOS Threat Detection Report Storage", - "1.2.840.10008.5.1.4.1.1.501.4": "DICOS 2D AIT Storage", - "1.2.840.10008.5.1.4.1.1.501.5": "DICOS 3D AIT Storage", - "1.2.840.10008.5.1.4.1.1.501.6": "DICOS Quadrupole Resonance (QR) Storage", - "1.2.840.10008.5.1.4.1.1.601.1": "Eddy Current Image Storage", - "1.2.840.10008.5.1.4.1.1.601.2": "Eddy Current Multi-frame Image Storage", - "1.2.840.10008.5.1.4.1.2.1.1": - "Patient Root Query/Retrieve Information Model - FIND", - "1.2.840.10008.5.1.4.1.2.1.2": - "Patient Root Query/Retrieve Information Model - MOVE", - "1.2.840.10008.5.1.4.1.2.1.3": - "Patient Root Query/Retrieve Information Model - GET", - "1.2.840.10008.5.1.4.1.2.2.1": - "Study Root Query/Retrieve Information Model - FIND", - "1.2.840.10008.5.1.4.1.2.2.2": - "Study Root Query/Retrieve Information Model - MOVE", - "1.2.840.10008.5.1.4.1.2.2.3": - "Study Root Query/Retrieve Information Model - GET", - "1.2.840.10008.5.1.4.1.2.3.1": - "Patient/Study Only Query/Retrieve Information Model - FIND (Retired)", - "1.2.840.10008.5.1.4.1.2.3.2": - "Patient/Study Only Query/Retrieve Information Model - MOVE (Retired)", - "1.2.840.10008.5.1.4.1.2.3.3": - "Patient/Study Only Query/Retrieve Information Model - GET (Retired)", - "1.2.840.10008.5.1.4.1.2.4.2": "Composite Instance Root Retrieve - MOVE", - "1.2.840.10008.5.1.4.1.2.4.3": "Composite Instance Root Retrieve - GET", - "1.2.840.10008.5.1.4.1.2.5.3": - "Composite Instance Retrieve Without Bulk Data - GET", - "1.2.840.10008.5.1.4.31": "Modality Worklist Information Model - FIND", - "1.2.840.10008.5.1.4.32": - "General Purpose Worklist Management Meta SOP Class (Retired)", - "1.2.840.10008.5.1.4.32.1": - "General Purpose Worklist Information Model - FIND (Retired)", - "1.2.840.10008.5.1.4.32.2": - "General Purpose Scheduled Procedure Step SOP Class (Retired)", - "1.2.840.10008.5.1.4.32.3": - "General Purpose Performed Procedure Step SOP Class (Retired)", - "1.2.840.10008.5.1.4.33": "Instance Availability Notification SOP Class", - "1.2.840.10008.5.1.4.34.1": - "RT Beams Delivery Instruction Storage - Trial (Retired)", - "1.2.840.10008.5.1.4.34.2": - "RT Conventional Machine Verification - Trial (Retired)", - "1.2.840.10008.5.1.4.34.3": "RT Ion Machine Verification - Trial (Retired)", - "1.2.840.10008.5.1.4.34.4": - "Unified Worklist and Procedure Step Service Class - Trial (Retired)", - "1.2.840.10008.5.1.4.34.4.1": - "Unified Procedure Step - Push SOP Class - Trial (Retired)", - "1.2.840.10008.5.1.4.34.4.2": - "Unified Procedure Step - Watch SOP Class - Trial (Retired)", - "1.2.840.10008.5.1.4.34.4.3": - "Unified Procedure Step - Pull SOP Class - Trial (Retired)", - "1.2.840.10008.5.1.4.34.4.4": - "Unified Procedure Step - Event SOP Class - Trial (Retired)", - "1.2.840.10008.5.1.4.34.5": "UPS Global Subscription SOP Instance", - "1.2.840.10008.5.1.4.34.5.1": "UPS Filtered Global Subscription SOP Instance", - "1.2.840.10008.5.1.4.34.6": - "Unified Worklist and Procedure Step Service Class", - "1.2.840.10008.5.1.4.34.6.1": "Unified Procedure Step - Push SOP Class", - "1.2.840.10008.5.1.4.34.6.2": "Unified Procedure Step - Watch SOP Class", - "1.2.840.10008.5.1.4.34.6.3": "Unified Procedure Step - Pull SOP Class", - "1.2.840.10008.5.1.4.34.6.4": "Unified Procedure Step - Event SOP Class", - "1.2.840.10008.5.1.4.34.7": "RT Beams Delivery Instruction Storage", - "1.2.840.10008.5.1.4.34.8": "RT Conventional Machine Verification", - "1.2.840.10008.5.1.4.34.9": "RT Ion Machine Verification", - "1.2.840.10008.5.1.4.37.1": "General Relevant Patient Information Query", - "1.2.840.10008.5.1.4.37.2": - "Breast Imaging Relevant Patient Information Query", - "1.2.840.10008.5.1.4.37.3": "Cardiac Relevant Patient Information Query", - "1.2.840.10008.5.1.4.38.1": "Hanging Protocol Storage", - "1.2.840.10008.5.1.4.38.2": "Hanging Protocol Information Model - FIND", - "1.2.840.10008.5.1.4.38.3": "Hanging Protocol Information Model - MOVE", - "1.2.840.10008.5.1.4.38.4": "Hanging Protocol Information Model - GET", - "1.2.840.10008.5.1.4.39.1": "Color Palette Storage", - "1.2.840.10008.5.1.4.39.2": "Color Palette Information Model - FIND", - "1.2.840.10008.5.1.4.39.3": "Color Palette Information Model - MOVE", - "1.2.840.10008.5.1.4.39.4": "Color Palette Information Model - GET", - "1.2.840.10008.5.1.4.41": "Product Characteristics Query SOP Class", - "1.2.840.10008.5.1.4.42": "Substance Approval Query SOP Class", - "1.2.840.10008.5.1.4.43.1": "Generic Implant Template Storage", - "1.2.840.10008.5.1.4.43.2": - "Generic Implant Template Information Model - FIND", - "1.2.840.10008.5.1.4.43.3": - "Generic Implant Template Information Model - MOVE", - "1.2.840.10008.5.1.4.43.4": - "Generic Implant Template Information Model - GET", - "1.2.840.10008.5.1.4.44.1": "Implant Assembly Template Storage", - "1.2.840.10008.5.1.4.44.2": - "Implant Assembly Template Information Model - FIND", - "1.2.840.10008.5.1.4.44.3": - "Implant Assembly Template Information Model - MOVE", - "1.2.840.10008.5.1.4.44.4": - "Implant Assembly Template Information Model - GET", - "1.2.840.10008.5.1.4.45.1": "Implant Template Group Storage", - "1.2.840.10008.5.1.4.45.2": "Implant Template Group Information Model - FIND", - "1.2.840.10008.5.1.4.45.3": "Implant Template Group Information Model - MOVE", - "1.2.840.10008.5.1.4.45.4": "Implant Template Group Information Model - GET", - "1.2.840.10008.7.1.1": "Native DICOM Model", - "1.2.840.10008.7.1.2": "Abstract Multi-Dimensional Image Model", - "1.2.840.10008.8.1.1": "DICOM Content Mapping Resource", - "1.2.840.10008.15.0.3.1": "dicomDeviceName", - "1.2.840.10008.15.0.3.2": "dicomDescription", - "1.2.840.10008.15.0.3.3": "dicomManufacturer", - "1.2.840.10008.15.0.3.4": "dicomManufacturerModelName", - "1.2.840.10008.15.0.3.5": "dicomSoftwareVersion", - "1.2.840.10008.15.0.3.6": "dicomVendorData", - "1.2.840.10008.15.0.3.7": "dicomAETitle", - "1.2.840.10008.15.0.3.8": "dicomNetworkConnectionReference", - "1.2.840.10008.15.0.3.9": "dicomApplicationCluster", - "1.2.840.10008.15.0.3.10": "dicomAssociationInitiator", - "1.2.840.10008.15.0.3.11": "dicomAssociationAcceptor", - "1.2.840.10008.15.0.3.12": "dicomHostname", - "1.2.840.10008.15.0.3.13": "dicomPort", - "1.2.840.10008.15.0.3.14": "dicomSOPClass", - "1.2.840.10008.15.0.3.15": "dicomTransferRole", - "1.2.840.10008.15.0.3.16": "dicomTransferSyntax", - "1.2.840.10008.15.0.3.17": "dicomPrimaryDeviceType", - "1.2.840.10008.15.0.3.18": "dicomRelatedDeviceReference", - "1.2.840.10008.15.0.3.19": "dicomPreferredCalledAETitle", - "1.2.840.10008.15.0.3.20": "dicomTLSCyphersuite", - "1.2.840.10008.15.0.3.21": "dicomAuthorizedNodeCertificateReference", - "1.2.840.10008.15.0.3.22": "dicomThisNodeCertificateReference", - "1.2.840.10008.15.0.3.23": "dicomInstalled", - "1.2.840.10008.15.0.3.24": "dicomStationName", - "1.2.840.10008.15.0.3.25": "dicomDeviceSerialNumber", - "1.2.840.10008.15.0.3.26": "dicomInstitutionName", - "1.2.840.10008.15.0.3.27": "dicomInstitutionAddress", - "1.2.840.10008.15.0.3.28": "dicomInstitutionDepartmentName", - "1.2.840.10008.15.0.3.29": "dicomIssuerOfPatientID", - "1.2.840.10008.15.0.3.30": "dicomPreferredCallingAETitle", - "1.2.840.10008.15.0.3.31": "dicomSupportedCharacterSet", - "1.2.840.10008.15.0.4.1": "dicomConfigurationRoot", - "1.2.840.10008.15.0.4.2": "dicomDevicesRoot", - "1.2.840.10008.15.0.4.3": "dicomUniqueAETitlesRegistryRoot", - "1.2.840.10008.15.0.4.4": "dicomDevice", - "1.2.840.10008.15.0.4.5": "dicomNetworkAE", - "1.2.840.10008.15.0.4.6": "dicomNetworkConnection", - "1.2.840.10008.15.0.4.7": "dicomUniqueAETitle", - "1.2.840.10008.15.0.4.8": "dicomTransferCapability", - "1.2.840.10008.15.1.1": "Universal Coordinated Time", -}; diff --git a/src/components/Preview/displays/dicomUtils/dicomDict.ts b/src/components/Preview/displays/dicomUtils/dicomDict.ts deleted file mode 100644 index fa222a666..000000000 --- a/src/components/Preview/displays/dicomUtils/dicomDict.ts +++ /dev/null @@ -1,479 +0,0 @@ -import { TAG_DICT, uids } from "./dataDictionary"; -import Rusha from "rusha"; -import dicomParser from "dicom-parser"; - -function imageFrameLink(frameIndex: any) { - let linkText = "<a class='imageFrameDownload' "; - linkText += `data-frameIndex='${frameIndex}'`; - linkText += ` href='#'> Frame #${frameIndex}</a>`; - return linkText; -} - -const rusha = new Rusha(); - -// helper function to see if a string only has ascii characters in it -function isASCII(str: any) { - //Ts-ignore - // biome-ignore lint/suspicious/noControlCharactersInRegex: <explanation> - return /^[\x00-\x7F]*$/.test(str); -} - -function sha1(byteArray: any, position?: any, length?: any) { - const subArray = dicomParser.sharedCopy( - byteArray, - position || 0, - length || byteArray.length, - ); - return rusha.digest(subArray); -} - -function sha1Text(byteArray: any, position?: any, length?: any) { - const showSHA1 = false; - if (showSHA1 === false) { - return ""; - } - const text = `; SHA1 ${sha1(byteArray, position, length)}`; - return text; -} - -function escapeSpecialCharacters(str: any) { - return str - .replace(/&/g, "&") - .replace(/</g, "<") - .replace(/>/g, ">") - .replace(/"/g, """); -} - -function isStringVr(vr: string) { - if ( - vr === "AT" || - vr === "FL" || - vr === "FD" || - vr === "OB" || - vr === "OF" || - vr === "OW" || - vr === "SI" || - vr === "SQ" || - vr === "SS" || - vr === "UL" || - vr === "US" - ) { - return false; - } - return true; -} - -function mapUid(str: any) { - //@ts-ignore - const uid = uids[str]; - if (uid) { - return ` [ ${uid} ]`; - } - return ""; -} - -const showPrivateElements = true; -const showP10Header = true; -const showEmptyValues = true; -const showLength = false; -const showVR = false; -const showFragments = true; -const showFrames = true; -const maxLength = 128; - -function getTag(tag: any) { - const group = tag.substring(1, 5); - const element = tag.substring(5, 9); - const tagIndex = `(${group},${element})`.toUpperCase(); - - //@ts-ignore - const attr = TAG_DICT[tagIndex]; - return attr; -} - -export function dumpDataSet(dataSet: any, output: any, testOutput: any) { - try { - const keys = []; - for (const propertyName in dataSet.elements) { - keys.push(propertyName); - } - keys.sort(); - - // the dataSet.elements object contains properties for each element parsed. The name of the property - // is based on the elements tag and looks like 'xGGGGEEEE' where GGGG is the group number and EEEE is the - // element number both with lowercase hexadecimal letters. For example, the Series Description DICOM element 0008,103E would - // be named 'x0008103e'. Here we iterate over each property (element) so we can build a string describing its - // contents to add to the output array - for (let k = 0; k < keys.length; k++) { - const propertyName = keys[k]; - const element = dataSet.elements[propertyName]; - - //@ts-ignore - if (showP10Header === false && element.tag <= "x0002ffff") { - continue; - } - - if ( - //@ts-ignore - showPrivateElements === false && - dicomParser.isPrivateTag(element.tag) - ) { - continue; - } - //@ts-ignore - if (showEmptyValues === false && element.length <= 0) { - continue; - } - let text = ""; - let title = ""; - - let color = "black"; - - const tag = getTag(element.tag); - - // The output string begins with the element name (or tag if not in data dictionary), length and VR (if present). VR is undefined for - // implicit transfer syntaxes - if (tag === undefined) { - let lengthText = `length=${element.length}`; - if (element.hadUndefinedLength) { - lengthText += " (-1)"; - } - //@ts-ignore - if (showLength === true) { - text += `${lengthText}; `; - } - - title += lengthText; - - let vrText = ""; - if (element.vr) { - vrText += `VR=${element.vr}`; - } - - if (showVR) { - text += `${vrText}; `; - } - if (vrText) { - title += `; ${vrText}`; - } - - title += `dataOffset=${element.dataOffset}`; - // make text lighter since this is an unknown attribute - color = "#C8C8C8"; - } else { - let vrText = ""; - if (element.vr) { - vrText += `VR=${element.vr}`; - } - - if (showVR) { - text += `${vrText}; `; - } - if (vrText) { - title += `${vrText}`; - } - - title += `; dataOffset=${element.dataOffset}`; - } - - // Here we check for Sequence items and iterate over them if present. items will not be set in the - // element object for elements that don't have SQ VR type. Note that implicit little endian - // sequences will are currently not parsed. - if (element.items) { - output.push(`<li>${text}</li>`); - output.push("<ul>"); - - // each item contains its own data set so we iterate over the items - // and recursively call this function - let itemNumber = 0; - element.items.forEach((item: any) => { - output.push(`<li>Item #${itemNumber++} ${item.tag}`); - let lengthText = ` length=${item.length}`; - if (item.hadUndefinedLength) { - lengthText += " (-1)"; - } - //@ts-ignore - if (showLength === true) { - text += `${lengthText}; `; - output.push(lengthText); - } - output.push("</li>"); - output.push("<ul>"); - dumpDataSet(item.dataSet, output, testOutput); - output.push("</ul>"); - }); - output.push("</ul>"); - } else if (element.fragments) { - text += `encapsulated pixel data with ${element.basicOffsetTable.length} offsets and ${element.fragments.length} fragments`; - text += sha1Text(dataSet.byteArray, element.dataOffset, element.length); - - output.push(`<li title='${title}'=>${text}</li>`); - - if (showFragments && element.encapsulatedPixelData) { - output.push("Fragments:<br>"); - output.push("<ul>"); - let itemNumber = 0; - element.fragments.forEach((fragment: any) => { - let str = `<li>Fragment #${itemNumber++} dataOffset = ${ - fragment.position - }`; - str += `; offset = ${fragment.offset}`; - str += `; length = ${fragment.length}`; - str += sha1Text( - dataSet.byteArray, - fragment.position, - fragment.length, - ); - str += "</li>"; - - output.push(str); - }); - output.push("</ul>"); - } - if (showFrames && element.encapsulatedPixelData) { - output.push("Frames:<br>"); - output.push("<ul>"); - let bot = element.basicOffsetTable; - // if empty bot and not RLE, calculate it - if (bot.length === 0) { - bot = dicomParser.createJPEGBasicOffsetTable(dataSet, element); - } - - for (let frameIndex = 0; frameIndex < bot.length; frameIndex++) { - let str = "<li>"; - str += imageFrameLink(frameIndex); - str += ` dataOffset = ${ - element.fragments[0].position + bot[frameIndex] - }`; - str += `; offset = ${bot[frameIndex]}`; - const imageFrame = dicomParser.readEncapsulatedImageFrame( - dataSet, - element, - frameIndex, - bot, - ); - str += `; length = ${imageFrame.length}`; - str += sha1Text(imageFrame); - str += "</li>"; - output.push(str); - } - output.push("</ul>"); - } - } else { - // use VR to display the right value - let vr; - if (element.vr !== undefined) { - vr = element.vr; - } else { - if (tag !== undefined) { - vr = tag.vr; - } - } - - // if the length of the element is less than 128 we try to show it. We put this check in - // to avoid displaying large strings which makes it harder to use. - if (element.length < maxLength) { - // Since the dataset might be encoded using implicit transfer syntax and we aren't using - // a data dictionary, we need some simple logic to figure out what data types these - // elements might be. Since the dataset might also be explicit we could be switch on the - // VR and do a better job on this, perhaps we can do that in another example - - // First we check to see if the element's length is appropriate for a UI or US VR. - // US is an important type because it is used for the - // image Rows and Columns so that is why those are assumed over other VR types. - if (element.vr === undefined && tag === undefined) { - if (element.length === 2) { - text += ` (${dataSet.uint16(propertyName)})`; - } else if (element.length === 4) { - text += ` (${dataSet.uint32(propertyName)})`; - } - - // Next we ask the dataset to give us the element's data in string form. Most elements are - // strings but some aren't so we do a quick check to make sure it actually has all ascii - // characters so we know it is reasonable to display it. - const str = dataSet.string(propertyName); - const stringIsAscii = isASCII(str); - - if (stringIsAscii) { - // the string will be undefined if the element is present but has no data - // (i.e. attribute is of type 2 or 3 ) so we only display the string if it has - // data. Note that the length of the element will be 0 to indicate "no data" - // so we don't put anything here for the value in that case. - if (str !== undefined) { - text += escapeSpecialCharacters(str) + mapUid(str); - } - } else { - if (element.length !== 2 && element.length !== 4) { - color = "#C8C8C8"; - // If it is some other length and we have no string - text += "<i>binary data</i>"; - } - } - } else { - if (isStringVr(vr)) { - // Next we ask the dataset to give us the element's data in string form. Most elements are - // strings but some aren't so we do a quick check to make sure it actually has all ascii - // characters so we know it is reasonable to display it. - const str = dataSet.string(propertyName); - const stringIsAscii = isASCII(str); - - if (stringIsAscii) { - // the string will be undefined if the element is present but has no data - // (i.e. attribute is of type 2 or 3 ) so we only display the string if it has - // data. Note that the length of the element will be 0 to indicate "no data" - // so we don't put anything here for the value in that case. - if (str !== undefined) { - text += escapeSpecialCharacters(str) + mapUid(str); - } - } else { - if (element.length !== 2 && element.length !== 4) { - color = "#C8C8C8"; - // If it is some other length and we have no string - text += "<i>binary data</i>"; - } - } - } else if (vr === "US") { - text += dataSet.uint16(propertyName); - for ( - let i = 1; - i < dataSet.elements[propertyName].length / 2; - i++ - ) { - text += `\\${dataSet.uint16(propertyName, i)}`; - } - } else if (vr === "SS") { - text += dataSet.int16(propertyName); - for ( - let i = 1; - i < dataSet.elements[propertyName].length / 2; - i++ - ) { - text += `\\${dataSet.int16(propertyName, i)}`; - } - } else if (vr === "UL") { - text += dataSet.uint32(propertyName); - for ( - let i = 1; - i < dataSet.elements[propertyName].length / 4; - i++ - ) { - text += `\\${dataSet.uint32(propertyName, i)}`; - } - } else if (vr === "SL") { - text += dataSet.int32(propertyName); - for ( - let i = 1; - i < dataSet.elements[propertyName].length / 4; - i++ - ) { - text += `\\${dataSet.int32(propertyName, i)}`; - } - } else if (vr == "FD") { - text += dataSet.double(propertyName); - for ( - let i = 1; - i < dataSet.elements[propertyName].length / 8; - i++ - ) { - text += `\\${dataSet.double(propertyName, i)}`; - } - } else if (vr === "FL") { - text += dataSet.float(propertyName); - for ( - let i = 1; - i < dataSet.elements[propertyName].length / 4; - i++ - ) { - text += `\\${dataSet.float(propertyName, i)}`; - } - } else if ( - vr === "OB" || - vr === "OW" || - vr === "UN" || - vr === "OF" || - vr === "UT" - ) { - color = "#C8C8C8"; - // If it is some other length and we have no string - /* - if (element.length === 2) { - text += - "<i>" + - dataDownloadLink(element, "binary data") + - " of length " + - element.length + - " as uint16: " + - dataSet.uint16(propertyName) + - "</i>"; - } else if (element.length === 4) { - text += - "<i>" + - dataDownloadLink(element, "binary data") + - " of length " + - element.length + - " as uint32: " + - dataSet.uint32(propertyName) + - "</i>"; - } else { - text += - "<i>" + - dataDownloadLink(element, "binary data") + - " of length " + - element.length + - " and VR " + - vr + - "</i>"; - } - */ - } else if (vr === "AT") { - const group = dataSet.uint16(propertyName, 0); - const groupHexStr = `0000${group.toString(16)}`.substring(-4); - const element = dataSet.uint16(propertyName, 1); - const elementHexStr = `0000${element.toString(16)}`.substring(-4); - text += `x${groupHexStr}${elementHexStr}`; - } else if (vr === "SQ") { - } else { - // If it is some other length and we have no string - text += `<i>no display code for VR ${vr} yet, sorry!</i>`; - } - } - - if (element.length === 0) { - color = "#C8C8C8"; - } - } else { - color = "#C8C8C8"; - /* - // Add text saying the data is too long to show... - text += "<i>" + dataDownloadLink(element, "data"); - text += " of length " + element.length + " for VR " + vr + " too long to show</i>"; - text += sha1Text(dataSet.byteArray, element.dataOffset, element.length); - */ - } - // finally we add the string to our output array surrounded by li elements so it shows up in the - // DOM as a list - - if (tag) { - testOutput.push({ - [tag.name]: text, - }); - } - - output.push( - `<li style="color:${color};" title="${title}">${text}</li>`, - ); - } - } - } catch (err) { - return testOutput; - } - - return testOutput.sort((a: any, b: any) => { - const keyA = Object.keys(a)[0]; - const keyB = Object.keys(b)[0]; - - if (keyA < keyB) return -1; - if (keyA > keyB) return 1; - return 0; - }); -} diff --git a/src/components/Preview/displays/dicomUtils/hardcodedMetaDataProvider.ts b/src/components/Preview/displays/dicomUtils/hardcodedMetaDataProvider.ts deleted file mode 100644 index 2e6f09b57..000000000 --- a/src/components/Preview/displays/dicomUtils/hardcodedMetaDataProvider.ts +++ /dev/null @@ -1,72 +0,0 @@ -// Add hardcoded meta data provider for color images -export default function hardcodedMetaDataProvider( - type: string, - imageId: string, - imageIds: string[], -) { - const colonIndex = imageId.indexOf(":"); - const scheme = imageId.substring(0, colonIndex); - if (scheme !== "web") { - return; - } - - if (type === "imagePixelModule") { - const imagePixelModule = { - pixelRepresentation: 0, - bitsAllocated: 24, - bitsStored: 24, - highBit: 24, - photometricInterpretation: "RGB", - samplesPerPixel: 3, - }; - - return imagePixelModule; - } - if (type === "generalSeriesModule") { - const generalSeriesModule = { - modality: "SC", - seriesNumber: 1, - seriesDescription: "Color", - seriesDate: "20190201", - seriesTime: "120000", - seriesInstanceUID: "1.2.276.0.7230010.3.1.4.83233.20190201120000.1", - }; - - return generalSeriesModule; - } - if (type === "imagePlaneModule") { - const index = imageIds.indexOf(imageId); - // console.warn(index); - const imagePlaneModule = { - imageOrientationPatient: [1, 0, 0, 0, 1, 0], - imagePositionPatient: [0, 0, index * 5], - pixelSpacing: [1, 1], - columnPixelSpacing: 1, - rowPixelSpacing: 1, - frameOfReferenceUID: "FORUID", - columns: 2048, - rows: 1216, - rowCosines: [1, 0, 0], - columnCosines: [0, 1, 0], - }; - - return imagePlaneModule; - } - if (type === "voiLutModule") { - return { - // According to the DICOM standard, the width is the number of samples - // in the input, so 256 samples. - windowWidth: [256], - // The center is offset by 0.5 to allow for an integer value for even - // sample counts - windowCenter: [128], - }; - } - if (type === "modalityLutModule") { - return { - rescaleSlope: 1, - rescaleIntercept: 0, - }; - } - return undefined; -} diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index e6bfe86b3..87bd474c1 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -1,28 +1,24 @@ +import * as cornerstone from "@cornerstonejs/core"; import { + EVENTS, Enums, RenderingEngine, type Types, - imageLoader, init, - metaData, volumeLoader, - EVENTS, } from "@cornerstonejs/core"; -import * as cornerstone from "@cornerstonejs/core"; import cornerstonejsDICOMImageLoader from "@cornerstonejs/dicom-image-loader"; import { cornerstoneStreamingDynamicImageVolumeLoader, cornerstoneStreamingImageVolumeLoader, } from "@cornerstonejs/streaming-image-volume-loader"; +import * as cornerstoneTools from "@cornerstonejs/tools"; import { type Types as CornerstoneToolTypes, init as csToolsInit, } from "@cornerstonejs/tools"; -import * as cornerstoneTools from "@cornerstonejs/tools"; import dicomParser from "dicom-parser"; -import hardcodedMetaDataProvider from "./hardcodedMetaDataProvider"; import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider"; -import registerWebImageLoader from "./webImageLoader"; //@ts-ignore window.cornerstone = cornerstone; @@ -170,7 +166,6 @@ export const basicInit = async () => { initVolumeLoader(); await init(); csToolsInit(); - registerWebImageLoader(imageLoader); }; export type IStackViewport = Types.IStackViewport; @@ -200,18 +195,45 @@ export const handleEvents = ( }; export const loadDicomImage = async (blob: Blob) => { - const imageID = cornerstonejsDICOMImageLoader.wadouri.fileManager.add(blob); - const image = await cornerstone.imageLoader.loadImage(imageID); + try { + const imageID = cornerstonejsDICOMImageLoader.wadouri.fileManager.add(blob); - // Detect if the DICOM is a multi-frame image - //@ts-ignore - const numberOfFrames = image.data.string("x00280008"); - const framesCount = numberOfFrames ? Number.parseInt(numberOfFrames, 10) : 1; + let bufferSize = 256 * 1024; // Start with 256 KB + const maxBufferSize = 5 * 1024 * 1024; // Maximum 5 MB - return { - imageID, - framesCount, - }; + let arrayBuffer: ArrayBuffer; + let dataSet: dicomParser.DataSet | undefined = undefined; + + while (bufferSize <= maxBufferSize) { + arrayBuffer = await blob.slice(0, bufferSize).arrayBuffer(); + try { + dataSet = dicomParser.parseDicom(new Uint8Array(arrayBuffer), { + untilTag: "x00280008", + }); + break; // Parsing succeeded, exit the loop + } catch (error: any) { + if (error?.exception?.includes("buffer overrun")) { + // Increase the buffer size and try again + bufferSize *= 2; // Double the buffer size + } else { + // Other parsing error + throw error; + } + } + } + if (!dataSet) { + throw new Error("Unable to parse DICOM file within buffer size limit."); + } + // Get the Number of Frames + const numberOfFramesString = dataSet.string("x00280008") || "1"; + const framesCount = Number.parseInt(numberOfFramesString, 10); + return { + imageID, + framesCount, + }; + } catch (e) { + throw new Error("Error parsing the DICOM file"); + } }; type ImagePoint = [number, number]; @@ -269,12 +291,6 @@ export const displayDicomImage = async ( const viewportId = uniqueId; const renderingEngineId = `myRenderingEngine_${uniqueId}`; const imageIds = [imageId]; - if (imageId.startsWith("web")) { - metaData.addProvider( - (type, imageId) => hardcodedMetaDataProvider(type, imageId, imageIds), - 10000, - ); - } const renderingEngine = new RenderingEngine(renderingEngineId); const viewportInput = { viewportId, diff --git a/src/components/Preview/displays/dicomUtils/webImageLoader.ts b/src/components/Preview/displays/dicomUtils/webImageLoader.ts deleted file mode 100644 index 4a04c1ccd..000000000 --- a/src/components/Preview/displays/dicomUtils/webImageLoader.ts +++ /dev/null @@ -1,268 +0,0 @@ -import * as cornerstone from "@cornerstonejs/core"; - -import ChrisAPIClient from "../../../../api/chrisapiclient"; - -const canvas = document.createElement("canvas"); -let lastImageIdDrawn: string | undefined; - -/** - * Creates a cornerstone Image object for the specified Image and imageId - * - * @param image - An Image - * @param imageId - the imageId for this image - * @returns Cornerstone Image Object - */ -function createImage(image: HTMLImageElement, imageId: string): any { - // extract the attributes we need - const rows = image.naturalHeight; - const columns = image.naturalWidth; - - function getPixelData(targetBuffer: { - arrayBuffer: ArrayBuffer; - offset: number; - length: number; - }): Uint8Array { - const imageData = getImageData(); - - let targetArray: Uint8Array; - - // Check if targetBuffer is provided for volume viewports - if (targetBuffer) { - targetArray = new Uint8Array( - targetBuffer.arrayBuffer, - targetBuffer.offset, - targetBuffer.length, - ); - } else { - targetArray = new Uint8Array(imageData.width * imageData.height * 3); - } - - // modify original image data and remove alpha channel (RGBA to RGB) - convertImageDataToRGB(imageData, targetArray); - - return targetArray; - } - - function convertImageDataToRGB( - imageData: ImageData, - targetArray: Uint8Array, - ): void { - for (let i = 0, j = 0; i < imageData.data.length; i += 4, j += 3) { - targetArray[j] = imageData.data[i]; - targetArray[j + 1] = imageData.data[i + 1]; - targetArray[j + 2] = imageData.data[i + 2]; - } - } - - function getImageData(): ImageData { - let context: CanvasRenderingContext2D; - - if (lastImageIdDrawn === imageId) { - context = canvas.getContext("2d")!; - } else { - canvas.height = image.naturalHeight; - canvas.width = image.naturalWidth; - context = canvas.getContext("2d")!; - context.drawImage(image, 0, 0); - lastImageIdDrawn = imageId; - } - - return context.getImageData(0, 0, image.naturalWidth, image.naturalHeight); - } - - function getCanvas(): HTMLCanvasElement { - if (lastImageIdDrawn === imageId) { - return canvas; - } - - canvas.height = image.naturalHeight; - canvas.width = image.naturalWidth; - const context = canvas.getContext("2d")!; - - context.drawImage(image, 0, 0); - lastImageIdDrawn = imageId; - - return canvas; - } - - // Extract the various attributes we need - return { - imageId, - minPixelValue: 0, - maxPixelValue: 255, - slope: 1, - intercept: 0, - windowCenter: 128, - windowWidth: 255, - getPixelData, - getCanvas, - getImage: () => image, - rows, - columns, - height: rows, - width: columns, - color: true, - // we converted the canvas rgba already to rgb above - rgba: false, - columnPixelSpacing: 1, // for web it's always 1 - rowPixelSpacing: 1, // for web it's always 1 - invert: false, - sizeInBytes: rows * columns * 3, - }; -} - -function arrayBufferToImage( - arrayBuffer: ArrayBuffer, -): Promise<HTMLImageElement> { - return new Promise((resolve, reject) => { - const image = new Image(); - const arrayBufferView = new Uint8Array(arrayBuffer); - const blob = new Blob([arrayBufferView]); - const urlCreator = window.URL || window.webkitURL; - const imageUrl = urlCreator.createObjectURL(blob); - - image.src = imageUrl; - image.onload = () => { - resolve(image); - urlCreator.revokeObjectURL(imageUrl); - }; - - image.onerror = (error) => { - urlCreator.revokeObjectURL(imageUrl); - reject(error); - }; - }); -} - -// -// This is a cornerstone image loader for web images such as PNG and JPEG -// -const options: { beforeSend?: (xhr: XMLHttpRequest) => void } = { - // callback allowing customization of the xhr (e.g. adding custom auth headers, cors, etc) - beforeSend: (xhr) => { - // xhr - const client = ChrisAPIClient.getClient(); - const token = client.auth.token; - xhr.setRequestHeader("Authorization", `Token ${token}`); - }, -}; - -// Loads an image given a URL to an image -function loadImage( - uri: string, - imageId: string, -): { promise: Promise<any>; cancelFn: () => void } { - const xhr = new XMLHttpRequest(); - - xhr.open("GET", uri, true); - xhr.responseType = "arraybuffer"; - if (options.beforeSend) { - options.beforeSend(xhr); - } - - xhr.onprogress = (oProgress) => { - if (oProgress.lengthComputable) { - // evt.loaded the bytes browser receive - // evt.total the total bytes set by the header - const loaded = oProgress.loaded; - const total = oProgress.total; - const percentComplete = Math.round((loaded / total) * 100); - - const eventDetail = { - imageId, - loaded, - total, - percentComplete, - }; - - cornerstone.triggerEvent( - cornerstone.eventTarget, - "cornerstoneimageloadprogress", - eventDetail, - ); - } - }; - - const promise = new Promise<any>((resolve, reject) => { - xhr.onload = function () { - const imagePromise = arrayBufferToImage(this.response); - - imagePromise - .then((image) => { - const imageObject = createImage(image, imageId); - - resolve(imageObject); - }) - .catch((error) => { - console.error(error); - reject(error); - }); - }; - - xhr.onerror = (error) => { - reject(error); - }; - - xhr.send(); - }); - - const cancelFn = () => { - xhr.abort(); - }; - - return { - promise, - cancelFn, - }; -} - -function registerWebImageLoader(imageLoader: any): void { - imageLoader.registerImageLoader("web", _loadImageIntoBuffer); -} - -/** - * Small stripped down loader from cornerstoneDICOMImageLoader - * Which doesn't create cornerstone images that we don't need - */ -export function _loadImageIntoBuffer( - imageId: string, - options?: Record<string, any>, -): { promise: Promise<Record<string, any>>; cancelFn: () => void } { - const uri = imageId.replace("web:", ""); - - const promise = new Promise((resolve, reject) => { - // get the pixel data from the server - loadImage(uri, imageId) - .promise.then( - (image) => { - if ( - !options || - !options.targetBuffer || - !options.targetBuffer.length || - !options.targetBuffer.offset - ) { - resolve(image); - return; - } - - // @ts-ignore - image.getPixelData(options.targetBuffer); - - resolve(true); - }, - (error) => { - reject(error); - }, - ) - .catch((error) => { - reject(error); - }); - }); - - return { - promise, - cancelFn: undefined, - }; -} - -export default registerWebImageLoader; diff --git a/src/types/index.d.ts b/src/types/index.d.ts index ad50fe05b..4922ca99e 100644 --- a/src/types/index.d.ts +++ b/src/types/index.d.ts @@ -6,3 +6,4 @@ declare module "rusha"; declare module "hammerjs"; declare module "preval.macro"; declare module "@cornerstonejs/dicom-image-loader"; +declare module "dcmjs"; From 4c860e62578708e711bac74befbdfd6cccab2d1b Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Thu, 24 Oct 2024 10:45:00 -0400 Subject: [PATCH 320/337] feat: cleanup --- src/components/Preview/displays/DcmDisplay.tsx | 10 +--------- src/components/Preview/displays/dicomUtils/utils.ts | 2 +- 2 files changed, 2 insertions(+), 10 deletions(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 414f6c31d..4347c21b3 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -188,15 +188,7 @@ const DcmDisplay = (props: DcmImageProps) => { // biome-ignore lint/complexity/noUselessCatch: <explanation> throw e; } - }, [ - selectedFile, - cacheStack, - fname, - currentImageIndex, - selectedIndex, - displayDicomImage, - loadDicomImage, - ]); + }, [selectedFile, cacheStack, fname, currentImageIndex, selectedIndex]); // Use React Query to fetch and cache the preview data const { isLoading, data, isError, error } = useQuery({ diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index 87bd474c1..d6210bf72 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -178,7 +178,7 @@ export const handleEvents = ( const previousTool = actionState.previouslyActive as string; const id = toolGroup?.id; - if (activeTool === "TagInfo") return; + if (activeTool === "TagInfo" || activeTool === "Play") return; if (id) { toolGroup?.setToolPassive(previousTool); From cbee7f0f98d66e5c53a392d79522fc589f5f4022 Mon Sep 17 00:00:00 2001 From: Jennings Zhang <dev@sl.jennin.xyz> Date: Thu, 24 Oct 2024 15:45:25 -0400 Subject: [PATCH 321/337] Fix pypx types (#1281) * Show error message for pfdcmStudies.error * Fix simplifyPypxSeriesData undefineds --- src/api/pfdcm/client.ts | 50 ++++++++++++++------------ src/app.css | 6 ++-- src/components/Pacs/PacsController.tsx | 5 +-- 3 files changed, 33 insertions(+), 28 deletions(-) diff --git a/src/api/pfdcm/client.ts b/src/api/pfdcm/client.ts index 6e0f6a029..54c8e8e46 100644 --- a/src/api/pfdcm/client.ts +++ b/src/api/pfdcm/client.ts @@ -198,6 +198,9 @@ function getValue( data: { [key: string]: PypxTag | ReadonlyArray<{ [key: string]: PypxTag }> }, name: string, ): string { + if (!(name in data)) { + return ""; + } if ("value" in data[name]) { return "" + data[name].value; } @@ -205,35 +208,36 @@ function getValue( } function simplifyPypxSeriesData(data: { [key: string]: PypxTag }): Series { - const parsedNumInstances = - data.NumberOfSeriesRelatedInstances.value === 0 - ? NaN - : parseInt(data.NumberOfSeriesRelatedInstances.value); - const NumberOfSeriesRelatedInstances = Number.isNaN(parsedNumInstances) + const numInstances = parseInt( + getValue(data, "NumberOfSeriesRelatedInstances"), + ); + const NumberOfSeriesRelatedInstances = Number.isNaN(numInstances) ? null - : parsedNumInstances; + : numInstances; return { - SpecificCharacterSet: "" + data.SpecificCharacterSet.value, + SpecificCharacterSet: getValue(data, "SpecificCharacterSet"), StudyDate: parsePypxDicomDate(data.StudyDate), SeriesDate: parsePypxDicomDate(data.SeriesDate), - AccessionNumber: "" + data.AccessionNumber.value, - RetrieveAETitle: "" + data.RetrieveAETitle.value, - Modality: "" + data.Modality.value, - StudyDescription: "" + data.StudyDescription.value, - SeriesDescription: "" + data.SeriesDescription.value, - PatientName: "" + data.PatientName.value, - PatientID: "" + data.PatientID.value, + AccessionNumber: getValue(data, "AccessionNumber"), + RetrieveAETitle: getValue(data, "RetrieveAETitle"), + Modality: getValue(data, "Modality"), + StudyDescription: getValue(data, "StudyDescription"), + SeriesDescription: getValue(data, "SeriesDescription"), + PatientName: getValue(data, "PatientName"), + PatientID: getValue(data, "PatientID"), PatientBirthDate: parsePypxDicomDate(data.PatientBirthDate), - PatientSex: "" + data.PatientSex.value, - PatientAge: "" + data.PatientAge.value, - ProtocolName: "" + data.ProtocolName.value, - AcquisitionProtocolName: "" + data.AcquisitionProtocolName.value, - AcquisitionProtocolDescription: - "" + data.AcquisitionProtocolDescription.value, - StudyInstanceUID: "" + data.StudyInstanceUID.value, - SeriesInstanceUID: "" + data.SeriesInstanceUID.value, + PatientSex: getValue(data, "PatientSex"), + PatientAge: getValue(data, "PatientAge"), + ProtocolName: getValue(data, "ProtocolName"), + AcquisitionProtocolName: getValue(data, "AcquisitionProtocolName"), + AcquisitionProtocolDescription: getValue( + data, + "AcquisitionProtocolDescription", + ), + StudyInstanceUID: getValue(data, "StudyInstanceUID"), + SeriesInstanceUID: getValue(data, "SeriesInstanceUID"), NumberOfSeriesRelatedInstances, - PerformedStationAETitle: "" + data.PerformedStationAETitle.value, + PerformedStationAETitle: getValue(data, "PerformedStationAETitle"), }; } diff --git a/src/app.css b/src/app.css index 6b79447e8..a33b2182f 100644 --- a/src/app.css +++ b/src/app.css @@ -65,13 +65,13 @@ .small-button { width: 16px; height: 16px; - font-size: 0.8rem + font-size: 0.8rem; } .large-button { width: 24px; height: 24px; - font-size:1rem; + font-size: 1rem; } .button-style { @@ -81,5 +81,5 @@ display: flex !important; justify-content: center !important; align-items: center !important; - line-height:0 !important + line-height: 0 !important; } diff --git a/src/components/Pacs/PacsController.tsx b/src/components/Pacs/PacsController.tsx index 5d93388ba..eb17c7ef7 100644 --- a/src/components/Pacs/PacsController.tsx +++ b/src/components/Pacs/PacsController.tsx @@ -371,8 +371,9 @@ const PacsController: React.FC<PacsControllerProps> = ({ }, [preferences, studies]); const error = React.useMemo( - () => wsError || pfdcmServices.error?.message, - [wsError, pfdcmServices.error], + () => + wsError || pfdcmServices.error?.message || pfdcmStudies.error?.message, + [wsError, pfdcmServices.error, pfdcmStudies.error], ); // ======================================== From 7457f65fb6a30c966957a67983c9f528353d64d6 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 25 Oct 2024 12:02:03 -0400 Subject: [PATCH 322/337] feat: Update pipeline export --- src/app.css | 6 +- src/components/PipelinesCopy/index.tsx | 36 ++++++++- .../PipelinesCopy/useDownloadSource.tsx | 80 +++++++++++++++++++ .../Preview/displays/DcmDisplay.tsx | 1 + 4 files changed, 116 insertions(+), 7 deletions(-) create mode 100644 src/components/PipelinesCopy/useDownloadSource.tsx diff --git a/src/app.css b/src/app.css index 6b79447e8..a33b2182f 100644 --- a/src/app.css +++ b/src/app.css @@ -65,13 +65,13 @@ .small-button { width: 16px; height: 16px; - font-size: 0.8rem + font-size: 0.8rem; } .large-button { width: 24px; height: 24px; - font-size:1rem; + font-size: 1rem; } .button-style { @@ -81,5 +81,5 @@ display: flex !important; justify-content: center !important; align-items: center !important; - line-height:0 !important + line-height: 0 !important; } diff --git a/src/components/PipelinesCopy/index.tsx b/src/components/PipelinesCopy/index.tsx index debc8d237..62eb05c06 100644 --- a/src/components/PipelinesCopy/index.tsx +++ b/src/components/PipelinesCopy/index.tsx @@ -5,25 +5,32 @@ import { MenuToggle, Pagination, TextInput, + Button, } from "@patternfly/react-core"; import SearchIcon from "@patternfly/react-icons/dist/esm/icons/search-icon"; import { useQuery, useQueryClient } from "@tanstack/react-query"; -import { Alert, Collapse } from "../Antd"; import { useContext, useState } from "react"; import { fetchPipelines, fetchResources } from "../../api/common"; +import { Alert, Collapse } from "../Antd"; import { EmptyStateComponent, SpinContainer } from "../Common"; import { ThemeContext } from "../DarkTheme/useTheme"; import { usePaginate } from "../Feeds/usePaginate"; import "./Pipelines.css"; -import PipelinesComponent from "./PipelinesComponent"; import PipelineUpload from "./PipelineUpload"; +import PipelinesComponent from "./PipelinesComponent"; import { PIPELINEQueryTypes, type PerPipelinePayload, PipelineContext, Types, } from "./context"; -import { useAppSelector } from "../../store/hooks"; +import { DownloadIcon } from "@patternfly/react-icons"; +import ChrisAPIClient from "../../api/chrisapiclient"; +import type { + PipelineSourceFile, + PipelineSourceFileList, +} from "@fnndsc/chrisapi"; +import { useDownloadSource } from "./useDownloadSource"; type LoadingResources = { [key: string]: boolean; @@ -170,6 +177,10 @@ const PipelinesCopy = () => { handlePipelineSearch(""); }; + /* Code to Download Pipeline Source Files */ + + const downloadPipelineMutation = useDownloadSource(); + return ( <div> <div @@ -238,7 +249,11 @@ const PipelinesCopy = () => { key: id, label: ( <div - style={{ display: "flex", justifyContent: "space-between" }} + style={{ + display: "flex", + justifyContent: "space-between", + alignItems: "center", + }} > <div style={{ display: "flex", flexDirection: "column" }}> <span>{name}</span> @@ -251,6 +266,19 @@ const PipelinesCopy = () => { {description} </span> </div> + <Button + variant="tertiary" + size="sm" + style={{ + padding: "0.5em", + }} + onClick={async (e) => { + e.stopPropagation(); + + downloadPipelineMutation.mutate(pipeline); + }} + icon={<DownloadIcon />} + /> </div> ), children: ( diff --git a/src/components/PipelinesCopy/useDownloadSource.tsx b/src/components/PipelinesCopy/useDownloadSource.tsx new file mode 100644 index 000000000..85497625b --- /dev/null +++ b/src/components/PipelinesCopy/useDownloadSource.tsx @@ -0,0 +1,80 @@ +// hooks/useDownloadPipeline.ts +import { useMutation } from "@tanstack/react-query"; +import { notification } from "antd"; +import ChrisAPIClient from "../../api/chrisapiclient"; +import type { + PipelineSourceFileList, + PipelineSourceFile, + Pipeline, +} from "@fnndsc/chrisapi"; + +const fetchPipelineSourceFiles = async (pipeline: Pipeline) => { + const client = ChrisAPIClient.getClient(); + const response: PipelineSourceFileList = await client.getPipelineSourceFiles({ + //@ts-ignore + pipeline_id: pipeline.data.id, + pipeline_name: pipeline.data.fname, + }); + + const arrayOfPipelines = response.getItems() as PipelineSourceFile[]; + + if (arrayOfPipelines.length === 0) { + throw new Error("Failed to find a source file"); + } + const neededPipeline = arrayOfPipelines.find( + (currentPipeline) => + currentPipeline.data.pipeline_name === pipeline.data.name, + ); + + if (!neededPipeline) { + throw new Error("Failed to find a source file"); + } + + // Get the file type (ftype) from the response + const fileType = neededPipeline.data.ftype || "txt"; // Default to 'txt' if ftype is undefined + + // Get the pipeline name and construct the file name with extension + const fileName = `${pipeline.data.name}.${fileType}`; + + // Get the file blob + const blob = await neededPipeline.getFileBlob(); + + // Create a URL for the blob + const url = window.URL.createObjectURL(blob); + + // Create a temporary anchor element + const a = document.createElement("a"); + a.href = url; + a.download = fileName; // Use the constructed file name + document.body.appendChild(a); + a.click(); + + // Clean up + document.body.removeChild(a); + window.URL.revokeObjectURL(url); + + return fileName; +}; + +export const useDownloadSource = () => { + const data = useMutation({ + mutationFn: fetchPipelineSourceFiles, + onError: (error: any) => { + notification.error({ + message: "Download Failed", + description: + error instanceof Error + ? error.message + : "An error occurred during download.", + }); + }, + onSuccess: (fileName: string) => { + notification.success({ + message: "Download Successful", + description: `The file "${fileName}" has been downloaded successfully.`, + }); + data.reset(); + }, + }); + return data; +}; diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 4347c21b3..81176bd44 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -195,6 +195,7 @@ const DcmDisplay = (props: DcmImageProps) => { queryKey: ["cornerstone-preview", fname], queryFn: previewFile, enabled: !!selectedFile && !!elementRef.current, + retry: false, }); useEffect(() => { From e82e70e98048658baed3b7dba9e4bd6a8e6ea515 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 25 Oct 2024 12:08:37 -0400 Subject: [PATCH 323/337] feat: Fix loading state --- src/components/Preview/displays/DcmDisplay.tsx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 81176bd44..9fa2b1163 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -313,7 +313,7 @@ const DcmDisplay = (props: DcmImageProps) => { ); // Check if the first frame is still loading - const loadingFirstFrame = isLoading || !data; + const loadingFirstFrame = isLoading && !data; /** * Load more images when scrolling near the end. From 44640c3172b6825fd5a033068dbb03e8c7dc701c Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 25 Oct 2024 12:19:41 -0400 Subject: [PATCH 324/337] feat: debugging --- src/components/Preview/displays/DcmDisplay.tsx | 2 ++ 1 file changed, 2 insertions(+) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 9fa2b1163..664a31508 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -315,6 +315,8 @@ const DcmDisplay = (props: DcmImageProps) => { // Check if the first frame is still loading const loadingFirstFrame = isLoading && !data; + console.log("isError", isError); + /** * Load more images when scrolling near the end. * Also handles loading multi-frame images. From 3914af1741816a7e96ce32d144f547fc5c348b79 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 25 Oct 2024 14:12:54 -0400 Subject: [PATCH 325/337] feat: Update Dcm Display for ultrasounds --- package.json | 7 +- pnpm-lock.yaml | 1308 ++++++++--------- .../Preview/displays/DcmDisplay.tsx | 32 +- .../Preview/displays/dicomUtils/utils.ts | 70 +- 4 files changed, 650 insertions(+), 767 deletions(-) diff --git a/package.json b/package.json index 0903d470e..94385127a 100644 --- a/package.json +++ b/package.json @@ -39,10 +39,9 @@ }, "dependencies": { "@ant-design/icons": "^5.5.1", - "@cornerstonejs/core": "^1.84.4", - "@cornerstonejs/dicom-image-loader": "^1.84.4", - "@cornerstonejs/streaming-image-volume-loader": "^1.84.4", - "@cornerstonejs/tools": "^1.84.4", + "@cornerstonejs/core": "^1.86.0", + "@cornerstonejs/dicom-image-loader": "^1.86.0", + "@cornerstonejs/tools": "^1.86.0", "@fnndsc/chrisapi": "^1.22.0", "@niivue/niivue": "0.44.2", "@patternfly/react-catalog-view-extension": "^5.0.0", diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index 16df9a696..4678904ea 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -12,17 +12,14 @@ importers: specifier: ^5.5.1 version: 5.5.1(react-dom@18.3.1(react@18.3.1))(react@18.3.1) '@cornerstonejs/core': - 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'@babel/helper-plugin-utils': 7.24.8 - '@babel/types': 7.25.6 + '@babel/helper-plugin-utils': 7.25.9 + '@babel/types': 7.25.4 esutils: 2.0.3 - '@babel/regjsgen@0.8.0': {} - '@babel/runtime-corejs3@7.25.9': dependencies: core-js-pure: 3.38.1 @@ -5197,6 +5129,12 @@ snapshots: '@babel/parser': 7.25.4 '@babel/types': 7.25.4 + '@babel/template@7.25.9': + dependencies: + '@babel/code-frame': 7.26.0 + '@babel/parser': 7.26.0 + '@babel/types': 7.26.0 + '@babel/traverse@7.25.4': dependencies: '@babel/code-frame': 7.24.7 @@ -5209,13 +5147,13 @@ snapshots: transitivePeerDependencies: - supports-color - '@babel/traverse@7.25.6': + '@babel/traverse@7.25.9': dependencies: - '@babel/code-frame': 7.24.7 - '@babel/generator': 7.25.6 - '@babel/parser': 7.25.6 - '@babel/template': 7.25.0 - '@babel/types': 7.25.6 + '@babel/code-frame': 7.26.0 + '@babel/generator': 7.26.0 + '@babel/parser': 7.26.0 + '@babel/template': 7.25.9 + '@babel/types': 7.26.0 debug: 4.3.7 globals: 11.12.0 transitivePeerDependencies: @@ -5227,11 +5165,10 @@ snapshots: '@babel/helper-validator-identifier': 7.24.7 to-fast-properties: 2.0.0 - '@babel/types@7.25.6': + '@babel/types@7.26.0': dependencies: - '@babel/helper-string-parser': 7.24.8 - '@babel/helper-validator-identifier': 7.24.7 - to-fast-properties: 2.0.0 + '@babel/helper-string-parser': 7.25.9 + '@babel/helper-validator-identifier': 7.25.9 '@bcoe/v8-coverage@0.2.3': {} @@ -5278,11 +5215,11 @@ snapshots: '@cornerstonejs/codec-openjph@2.4.5': {} - '@cornerstonejs/core@1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1)': + '@cornerstonejs/core@1.86.0(@babel/preset-env@7.26.0(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.95.0)(wslink@2.2.1)': dependencies: - '@kitware/vtk.js': 30.4.1(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1) + '@kitware/vtk.js': 30.4.1(@babel/preset-env@7.26.0(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.95.0)(wslink@2.2.1) comlink: 4.4.1 - detect-gpu: 5.0.45 + detect-gpu: 5.0.53 gl-matrix: 3.4.3 lodash.clonedeep: 4.5.0 transitivePeerDependencies: @@ -5291,13 +5228,13 @@ snapshots: - webpack - wslink - '@cornerstonejs/dicom-image-loader@1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1)': + '@cornerstonejs/dicom-image-loader@1.86.0(@babel/preset-env@7.26.0(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.95.0)(wslink@2.2.1)': dependencies: '@cornerstonejs/codec-charls': 1.2.3 '@cornerstonejs/codec-libjpeg-turbo-8bit': 1.2.2 '@cornerstonejs/codec-openjpeg': 1.2.4 '@cornerstonejs/codec-openjph': 2.4.5 - '@cornerstonejs/core': 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1) + '@cornerstonejs/core': 1.86.0(@babel/preset-env@7.26.0(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.95.0)(wslink@2.2.1) dicom-parser: 1.8.21 pako: 2.1.0 uuid: 9.0.1 @@ -5307,21 +5244,11 @@ snapshots: - webpack - wslink - '@cornerstonejs/streaming-image-volume-loader@1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1)': + '@cornerstonejs/tools@1.86.0(@babel/preset-env@7.26.0(@babel/core@7.25.2))(@icr/polyseg-wasm@0.4.0)(@kitware/vtk.js@30.4.1(@babel/preset-env@7.26.0(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.95.0)(wslink@2.2.1))(@types/d3-array@3.2.1)(@types/d3-interpolate@3.0.4)(autoprefixer@10.4.20(postcss@8.4.47))(d3-array@3.2.4)(d3-interpolate@3.0.1)(gl-matrix@3.4.3)(webpack@5.95.0)(wslink@2.2.1)': dependencies: - '@cornerstonejs/core': 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1) - comlink: 4.4.1 - transitivePeerDependencies: - - '@babel/preset-env' - - autoprefixer - - webpack - - wslink - - '@cornerstonejs/tools@1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(@icr/polyseg-wasm@0.4.0)(@kitware/vtk.js@30.4.1(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1))(@types/d3-array@3.2.1)(@types/d3-interpolate@3.0.4)(autoprefixer@10.4.20(postcss@8.4.47))(d3-array@3.2.4)(d3-interpolate@3.0.1)(gl-matrix@3.4.3)(webpack@5.94.0)(wslink@2.2.1)': - dependencies: - '@cornerstonejs/core': 1.84.4(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1) + '@cornerstonejs/core': 1.86.0(@babel/preset-env@7.26.0(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.95.0)(wslink@2.2.1) '@icr/polyseg-wasm': 0.4.0 - '@kitware/vtk.js': 30.4.1(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1) + '@kitware/vtk.js': 30.4.1(@babel/preset-env@7.26.0(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.95.0)(wslink@2.2.1) '@types/d3-array': 3.2.1 '@types/d3-interpolate': 3.0.4 '@types/offscreencanvas': 2019.7.3 @@ -5464,9 +5391,9 @@ snapshots: '@jridgewell/resolve-uri': 3.1.2 '@jridgewell/sourcemap-codec': 1.5.0 - '@kitware/vtk.js@30.4.1(@babel/preset-env@7.25.4(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.94.0)(wslink@2.2.1)': + '@kitware/vtk.js@30.4.1(@babel/preset-env@7.26.0(@babel/core@7.25.2))(autoprefixer@10.4.20(postcss@8.4.47))(webpack@5.95.0)(wslink@2.2.1)': dependencies: - '@babel/preset-env': 7.25.4(@babel/core@7.25.2) + '@babel/preset-env': 7.26.0(@babel/core@7.25.2) '@babel/runtime': 7.22.11 '@types/webxr': 0.5.20 autoprefixer: 10.4.20(postcss@8.4.47) @@ -5482,7 +5409,7 @@ snapshots: spark-md5: 3.0.2 stream-browserify: 3.0.0 webworker-promise: 0.5.0 - worker-loader: 3.0.8(webpack@5.94.0) + worker-loader: 3.0.8(webpack@5.95.0) wslink: 2.2.1 xmlbuilder2: 3.0.2 transitivePeerDependencies: @@ -5961,10 +5888,6 @@ snapshots: dependencies: undici-types: 6.19.8 - '@types/node@22.6.1': - dependencies: - undici-types: 6.19.8 - '@types/offscreencanvas@2019.7.3': {} '@types/parse-json@4.0.2': {} @@ -6280,7 +6203,7 @@ snapshots: autoprefixer@10.4.20(postcss@8.4.47): dependencies: browserslist: 4.23.3 - caniuse-lite: 1.0.30001663 + caniuse-lite: 1.0.30001653 fraction.js: 4.3.7 normalize-range: 0.1.2 picocolors: 1.1.0 @@ -6303,7 +6226,7 @@ snapshots: babel-plugin-polyfill-corejs2@0.4.11(@babel/core@7.25.2): dependencies: - '@babel/compat-data': 7.25.4 + '@babel/compat-data': 7.26.0 '@babel/core': 7.25.2 '@babel/helper-define-polyfill-provider': 0.6.2(@babel/core@7.25.2) semver: 6.3.1 @@ -6356,6 +6279,13 @@ snapshots: node-releases: 2.0.18 update-browserslist-db: 1.1.0(browserslist@4.23.3) + browserslist@4.24.2: + dependencies: + caniuse-lite: 1.0.30001669 + electron-to-chromium: 1.5.46 + node-releases: 2.0.18 + update-browserslist-db: 1.1.1(browserslist@4.24.2) + buffer-from@1.1.2: {} cac@6.7.14: {} @@ -6373,7 +6303,7 @@ snapshots: caniuse-lite@1.0.30001653: {} - caniuse-lite@1.0.30001663: {} + caniuse-lite@1.0.30001669: {} canvas-color-tracker@1.2.2: dependencies: @@ -6648,7 +6578,7 @@ snapshots: dequal@2.0.3: {} - detect-gpu@5.0.45: + detect-gpu@5.0.53: dependencies: webgl-constants: 1.1.1 @@ -6689,6 +6619,8 @@ snapshots: electron-to-chromium@1.5.13: {} + electron-to-chromium@1.5.46: {} + email-validator@2.0.4: {} emoji-regex@8.0.0: {} @@ -6746,6 +6678,8 @@ snapshots: escalade@3.1.2: {} + escalade@3.2.0: {} + escape-string-regexp@1.0.5: {} escape-string-regexp@4.0.0: {} @@ -7097,7 +7031,7 @@ snapshots: jest-worker@27.5.1: dependencies: - '@types/node': 22.6.1 + '@types/node': 22.5.5 merge-stream: 2.0.0 supports-color: 8.1.1 @@ -7115,10 +7049,10 @@ snapshots: argparse: 1.0.10 esprima: 4.0.1 - jsesc@0.5.0: {} - jsesc@2.5.2: {} + jsesc@3.0.2: {} + json-parse-even-better-errors@2.3.1: {} json-schema-traverse@0.4.1: {} @@ -8169,7 +8103,7 @@ snapshots: readable-stream@3.6.2: dependencies: inherits: 2.0.4 - string_decoder: 1.1.1 + string_decoder: 1.3.0 util-deprecate: 1.0.2 rechoir@0.6.2: @@ -8207,18 +8141,20 @@ snapshots: dependencies: '@babel/runtime': 7.25.6 - regexpu-core@5.3.2: + regexpu-core@6.1.1: dependencies: - '@babel/regjsgen': 0.8.0 regenerate: 1.4.2 regenerate-unicode-properties: 10.2.0 - regjsparser: 0.9.1 + regjsgen: 0.8.0 + regjsparser: 0.11.1 unicode-match-property-ecmascript: 2.0.0 unicode-match-property-value-ecmascript: 2.2.0 - regjsparser@0.9.1: + regjsgen@0.8.0: {} + + regjsparser@0.11.1: dependencies: - jsesc: 0.5.0 + jsesc: 3.0.2 release-zalgo@1.0.0: dependencies: @@ -8276,8 +8212,6 @@ snapshots: dependencies: tslib: 2.7.0 - safe-buffer@5.1.2: {} - safe-buffer@5.2.1: {} sanitize-html@2.13.0: @@ -8394,9 +8328,9 @@ snapshots: emoji-regex: 9.2.2 strip-ansi: 7.1.0 - string_decoder@1.1.1: + string_decoder@1.3.0: dependencies: - safe-buffer: 5.1.2 + safe-buffer: 5.2.1 strip-ansi@6.0.1: dependencies: @@ -8432,14 +8366,14 @@ snapshots: tapable@2.2.1: {} - terser-webpack-plugin@5.3.10(webpack@5.94.0): + terser-webpack-plugin@5.3.10(webpack@5.95.0): dependencies: '@jridgewell/trace-mapping': 0.3.25 jest-worker: 27.5.1 schema-utils: 3.3.0 serialize-javascript: 6.0.2 terser: 5.33.0 - webpack: 5.94.0 + webpack: 5.95.0 terser@5.33.0: dependencies: @@ -8534,6 +8468,12 @@ snapshots: escalade: 3.1.2 picocolors: 1.0.1 + update-browserslist-db@1.1.1(browserslist@4.24.2): + dependencies: + browserslist: 4.24.2 + escalade: 3.2.0 + picocolors: 1.1.0 + uri-js@4.4.1: dependencies: punycode: 2.3.1 @@ -8853,7 +8793,7 @@ snapshots: webpack-sources@3.2.3: {} - webpack@5.94.0: + webpack@5.95.0: dependencies: '@types/estree': 1.0.6 '@webassemblyjs/ast': 1.12.1 @@ -8875,7 +8815,7 @@ snapshots: neo-async: 2.6.2 schema-utils: 3.3.0 tapable: 2.2.1 - terser-webpack-plugin: 5.3.10(webpack@5.94.0) + terser-webpack-plugin: 5.3.10(webpack@5.95.0) watchpack: 2.4.2 webpack-sources: 3.2.3 transitivePeerDependencies: @@ -8903,11 +8843,11 @@ snapshots: siginfo: 2.0.0 stackback: 0.0.2 - worker-loader@3.0.8(webpack@5.94.0): + worker-loader@3.0.8(webpack@5.95.0): dependencies: loader-utils: 2.0.4 schema-utils: 3.3.0 - webpack: 5.94.0 + webpack: 5.95.0 wrap-ansi@6.2.0: dependencies: diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 664a31508..c25c2de29 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -122,7 +122,7 @@ const DcmDisplay = (props: DcmImageProps) => { * If the image is already cached, it uses the cached data. * Otherwise, it loads the image and caches it. */ - const previewFile = useCallback(async () => { + const previewFile = async () => { try { if (!elementRef.current) return {}; const existingImageEntry = cacheStack?.[fname]; @@ -162,7 +162,7 @@ const DcmDisplay = (props: DcmImageProps) => { framesCount > 1 ? Array.from( { length: framesCount }, - (_, i) => `${imageID}?frame=${i}`, + (_, i) => `${imageID}#frame=${i + 1}`, ) : imageID; @@ -173,7 +173,7 @@ const DcmDisplay = (props: DcmImageProps) => { const elementId = `cornerstone-element-${fname}`; const { viewport, renderingEngine } = await displayDicomImage( elementRef.current, - framesCount > 1 ? framesList[0] : imageID, + framesCount > 1 ? framesList : [imageID], elementId, ); @@ -188,7 +188,7 @@ const DcmDisplay = (props: DcmImageProps) => { // biome-ignore lint/complexity/noUselessCatch: <explanation> throw e; } - }, [selectedFile, cacheStack, fname, currentImageIndex, selectedIndex]); + }; // Use React Query to fetch and cache the preview data const { isLoading, data, isError, error } = useQuery({ @@ -240,18 +240,6 @@ const DcmDisplay = (props: DcmImageProps) => { }; }, [stopCinePlay]); - /** - * Load multi-frame images into the viewport. - */ - const loadMultiFrames = useCallback(async () => { - if (activeViewportRef.current) { - const currentIndex = activeViewportRef.current.getCurrentImageIdIndex(); - const imageIDs = imageStack[fname] as string[]; - await activeViewportRef.current.setStack(imageIDs, currentIndex); - activeViewportRef.current.render(); - } - }, [imageStack, fname]); - /** * Generator function to yield image files starting from a specific index. */ @@ -315,8 +303,6 @@ const DcmDisplay = (props: DcmImageProps) => { // Check if the first frame is still loading const loadingFirstFrame = isLoading && !data; - console.log("isError", isError); - /** * Load more images when scrolling near the end. * Also handles loading multi-frame images. @@ -324,17 +310,14 @@ const DcmDisplay = (props: DcmImageProps) => { useEffect(() => { if ( !loadingFirstFrame && - !Array.isArray(data?.[selectedFile.data.fname]) && + data && + !Array.isArray(data[fname]) && filteredList.length > lastLoadedIndex && Object.keys(cacheStack).length !== filteredList.length && !multiFrameDisplay ) { loadMoreImages(filteredList); } - - if (!loadingFirstFrame && multiFrameDisplay) { - loadMultiFrames(); - } }, [ loadingFirstFrame, filteredList, @@ -342,9 +325,8 @@ const DcmDisplay = (props: DcmImageProps) => { cacheStack, multiFrameDisplay, loadMoreImages, - loadMultiFrames, data, - selectedFile, + fname, ]); /** diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index d6210bf72..cc609aabf 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -5,13 +5,8 @@ import { RenderingEngine, type Types, init, - volumeLoader, } from "@cornerstonejs/core"; import cornerstonejsDICOMImageLoader from "@cornerstonejs/dicom-image-loader"; -import { - cornerstoneStreamingDynamicImageVolumeLoader, - cornerstoneStreamingImageVolumeLoader, -} from "@cornerstonejs/streaming-image-volume-loader"; import * as cornerstoneTools from "@cornerstonejs/tools"; import { type Types as CornerstoneToolTypes, @@ -142,28 +137,11 @@ export const initializeCornerstoneForDicoms = () => { cornerstonejsDICOMImageLoader.webWorkerManager.initialize(config); }; -function initVolumeLoader() { - volumeLoader.registerUnknownVolumeLoader( - //@ts-ignore - cornerstoneStreamingImageVolumeLoader, - ); - volumeLoader.registerVolumeLoader( - "cornerstoneStreamingImageVolume", - //@ts-ignore - cornerstoneStreamingImageVolumeLoader, - ); - volumeLoader.registerVolumeLoader( - "cornerstoneStreamingDynamicImageVolume", - //@ts-ignore - cornerstoneStreamingDynamicImageVolumeLoader, - ); -} - export const basicInit = async () => { cornerstone.setUseSharedArrayBuffer(Enums.SharedArrayBufferModes.FALSE); initProviders(); initializeCornerstoneForDicoms(); - initVolumeLoader(); + await init(); csToolsInit(); }; @@ -196,43 +174,28 @@ export const handleEvents = ( export const loadDicomImage = async (blob: Blob) => { try { + // Generate a unique file ID for the blob const imageID = cornerstonejsDICOMImageLoader.wadouri.fileManager.add(blob); + // Load the image using Cornerstone; this ensures the image and metadata are available + await cornerstone.imageLoader.loadImage(imageID); - let bufferSize = 256 * 1024; // Start with 256 KB - const maxBufferSize = 5 * 1024 * 1024; // Maximum 5 MB + // Retrieve metadata using the metadata provider + const generalImageModule = await cornerstone.metaData.get( + "multiframeModule", + imageID, + ); - let arrayBuffer: ArrayBuffer; - let dataSet: dicomParser.DataSet | undefined = undefined; + // Extract the Number of Frames; default to 1 if not available + const framesCount = generalImageModule?.NumberOfFrames + ? Number.parseInt(generalImageModule.NumberOfFrames, 10) + : 1; - while (bufferSize <= maxBufferSize) { - arrayBuffer = await blob.slice(0, bufferSize).arrayBuffer(); - try { - dataSet = dicomParser.parseDicom(new Uint8Array(arrayBuffer), { - untilTag: "x00280008", - }); - break; // Parsing succeeded, exit the loop - } catch (error: any) { - if (error?.exception?.includes("buffer overrun")) { - // Increase the buffer size and try again - bufferSize *= 2; // Double the buffer size - } else { - // Other parsing error - throw error; - } - } - } - if (!dataSet) { - throw new Error("Unable to parse DICOM file within buffer size limit."); - } - // Get the Number of Frames - const numberOfFramesString = dataSet.string("x00280008") || "1"; - const framesCount = Number.parseInt(numberOfFramesString, 10); return { imageID, framesCount, }; } catch (e) { - throw new Error("Error parsing the DICOM file"); + throw new Error(`Error loading the DICOM image: ${(e as Error).message}`); } }; @@ -281,7 +244,7 @@ function createDisplayArea( export const displayDicomImage = async ( element: HTMLDivElement, - imageId: string, + imageIds: string[], uniqueId: string, ): Promise<{ viewport: Types.IStackViewport; @@ -290,7 +253,6 @@ export const displayDicomImage = async ( try { const viewportId = uniqueId; const renderingEngineId = `myRenderingEngine_${uniqueId}`; - const imageIds = [imageId]; const renderingEngine = new RenderingEngine(renderingEngineId); const viewportInput = { viewportId, @@ -307,9 +269,9 @@ export const displayDicomImage = async ( viewport.setProperties(displayArea); await viewport.setStack(imageIds); cornerstoneTools.utilities.stackPrefetch.enable(viewport.element); - viewport.render(); // Set the stack scroll mouse wheel tool toolGroup?.setToolActive(StackScrollMouseWheelTool.toolName); + viewport.render(); return { viewport, renderingEngine, From fd5b1e9e23a6d2ff43af0bce1c16105613c91cae Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 25 Oct 2024 15:30:06 -0400 Subject: [PATCH 326/337] feat: Use cine tools from cornerstone instead of custom implementation --- .../Preview/displays/DcmDisplay.tsx | 86 +++++++++---------- .../Preview/displays/dicomUtils/utils.ts | 4 + 2 files changed, 46 insertions(+), 44 deletions(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index c25c2de29..126be85fb 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -12,7 +12,9 @@ import { displayDicomImage, handleEvents, loadDicomImage, + playClip, setUpTooling, + stopClip, } from "./dicomUtils/utils"; import type { IStackViewport } from "./dicomUtils/utils"; @@ -59,7 +61,6 @@ const DcmDisplay = (props: DcmImageProps) => { const cacheRef = useRef<{ [key: string]: ImageStackType }>({ [CACHE_KEY]: {}, }); - const cineIntervalIdRef = useRef<NodeJS.Timeout | null>(null); // Derived values const size = useSize(dicomImageRef); @@ -213,9 +214,8 @@ const DcmDisplay = (props: DcmImageProps) => { * Stop cine playback. */ const stopCinePlay = useCallback(() => { - if (cineIntervalIdRef.current) { - clearInterval(cineIntervalIdRef.current); - cineIntervalIdRef.current = null; + if (elementRef.current) { + stopClip(elementRef.current); } }, []); @@ -240,6 +240,44 @@ const DcmDisplay = (props: DcmImageProps) => { }; }, [stopCinePlay]); + /** + * Start cine playback. + */ + + const startCinePlay = useCallback(() => { + if (elementRef.current) { + const clipOptions = { + framesPerSecond: 24, + loop: true, + }; + + try { + playClip(elementRef.current, clipOptions); + } catch (error) { + notification.error({ message: "Failed to play this clip" }); + } + } else { + notification.error({ + message: "Cine playback cannot start: conditions not met.", + }); + } + }, []); + + /** + * Manage cine playback based on `actionState["Play"]` state. + */ + useEffect(() => { + const isPlaying = actionState.Play === true; + if (isPlaying) { + startCinePlay(); + } else { + stopCinePlay(); + } + return () => { + stopCinePlay(); + }; + }, [actionState.Play, startCinePlay, stopCinePlay]); + /** * Generator function to yield image files starting from a specific index. */ @@ -396,46 +434,6 @@ const DcmDisplay = (props: DcmImageProps) => { .padStart(totalDigits, "0"); const imageCountDisplay = imageCount.toString().padStart(totalDigits, "0"); - /** - * Start cine playback. - */ - const startCinePlay = useCallback(() => { - if ( - cineIntervalIdRef.current || - !activeViewportRef.current || - !imageStack[fname] || - imageCount <= 1 - ) - return; - - const defaultPlaybackSpeed = 24; // Default playback speed (fps) - const frameDuration = 1000 / defaultPlaybackSpeed; // Frame duration in milliseconds - - cineIntervalIdRef.current = setInterval(() => { - if (activeViewportRef.current) { - let currentIndex = activeViewportRef.current.getCurrentImageIdIndex(); - currentIndex = (currentIndex + 1) % imageCount; - activeViewportRef.current.setImageIdIndex(currentIndex); - setCurrentImageIndex(currentIndex); - } - }, frameDuration); - }, [imageStack, fname, imageCount]); - - /** - * Manage cine playback based on `actionState["Play"]` state. - */ - useEffect(() => { - const isPlaying = actionState.Play === true; - if (isPlaying && imageCount > 1) { - startCinePlay(); - } else { - stopCinePlay(); - } - return () => { - stopCinePlay(); - }; - }, [actionState.Play, startCinePlay, stopCinePlay, imageCount]); - /* Manage Tooling */ useEffect(() => { if (actionState && activeViewportRef.current) { diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index cc609aabf..7ee3b5bc3 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -33,12 +33,16 @@ const { LengthTool, ToolGroupManager, Enums: csToolsEnums, + utilities, } = cornerstoneTools; const { MouseBindings } = csToolsEnums; export const events = EVENTS; let toolGroup: CornerstoneToolTypes.IToolGroup | undefined; +export const stopClip = utilities.cine.stopClip; +export const playClip = utilities.cine.playClip; + function initProviders() { cornerstone.metaData.addProvider( ptScalingMetaDataProvider.get.bind(ptScalingMetaDataProvider), From e5dfd6f94ff2c3a0172ee12645505ddf4fc4bb9b Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Fri, 25 Oct 2024 16:53:58 -0400 Subject: [PATCH 327/337] feat: minor bug fix --- src/components/PipelinesCopy/useDownloadSource.tsx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/components/PipelinesCopy/useDownloadSource.tsx b/src/components/PipelinesCopy/useDownloadSource.tsx index 85497625b..4469ab506 100644 --- a/src/components/PipelinesCopy/useDownloadSource.tsx +++ b/src/components/PipelinesCopy/useDownloadSource.tsx @@ -71,7 +71,7 @@ export const useDownloadSource = () => { onSuccess: (fileName: string) => { notification.success({ message: "Download Successful", - description: `The file "${fileName}" has been downloaded successfully.`, + description: `The pipeline "${fileName}" has been downloaded successfully.`, }); data.reset(); }, From 1ba5094f5bcc9781ff7c3064b2f12213df7b260e Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Tue, 29 Oct 2024 16:27:02 -0400 Subject: [PATCH 328/337] feat: Add progress bar to dicom display --- .../FeedOutputBrowser/FileBrowser.tsx | 2 +- src/components/Feeds/FeedListView.tsx | 30 +++++++------ .../Preview/displays/DcmDisplay.tsx | 43 ++++++++++++++++--- .../Preview/displays/NiiVueDisplay.tsx | 19 +------- .../Preview/displays/dicomUtils/utils.ts | 19 ++++++++ 5 files changed, 75 insertions(+), 38 deletions(-) diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 56363f868..9036a9057 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -74,7 +74,7 @@ const FileBrowser = (props: FileBrowserProps) => { const selectedFile = useAppSelector((state) => state.explorer.selectedFile); const drawerState = useAppSelector((state) => state.drawers); const username = useAppSelector((state) => state.user.username); - const { subFoldersMap, linkFilesMap, filesMap, filesPagination, folderList } = + const { subFoldersMap, linkFilesMap, filesMap, folderList } = pluginFilesPayload; const breadcrumb = additionalKey.split("/"); const currentPath = `home/${username}/feeds/feed_${feed?.data.id}/${selected?.data.plugin_name}_${selected?.data.id}/data`; diff --git a/src/components/Feeds/FeedListView.tsx b/src/components/Feeds/FeedListView.tsx index 4fb0675a6..68877cc05 100644 --- a/src/components/Feeds/FeedListView.tsx +++ b/src/components/Feeds/FeedListView.tsx @@ -305,20 +305,22 @@ const TableSelectable: React.FC = () => { </div> </div> - <Operations - origin={{ - type: OperationContext.FEEDS, - additionalKeys: [perPage, page, type, search, searchType], - }} - customStyle={{ - toolbarItem: { paddingInlineStart: "0" }, - toolbar: { - paddingTop: "0", - paddingBottom: "0", - background: "inherit", - }, - }} - /> + {isLoggedIn && ( + <Operations + origin={{ + type: OperationContext.FEEDS, + additionalKeys: [perPage, page, type, search, searchType], + }} + customStyle={{ + toolbarItem: { paddingInlineStart: "0" }, + toolbar: { + paddingTop: "0", + paddingBottom: "0", + background: "inherit", + }, + }} + /> + )} </PageSection> <PageSection style={{ paddingBlockStart: "0.5em" }}> {loadingFeedState ? ( diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 126be85fb..fb42614aa 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -1,5 +1,6 @@ import type { RenderingEngine } from "@cornerstonejs/core"; import { useQuery } from "@tanstack/react-query"; +import axios, { type AxiosProgressEvent } from "axios"; import { useCallback, useEffect, useMemo, useRef, useState } from "react"; import { type IFileBlob, getFileExtension } from "../../../api/model"; import { notification } from "../../Antd"; @@ -8,6 +9,7 @@ import useSize from "../../FeedTree/useSize"; import type { ActionState } from "../FileDetailView"; import { events, + type IStackViewport, basicInit, displayDicomImage, handleEvents, @@ -15,8 +17,9 @@ import { playClip, setUpTooling, stopClip, + stupidlyGetFileResourceUrl, } from "./dicomUtils/utils"; -import type { IStackViewport } from "./dicomUtils/utils"; +import { Progress } from "antd"; export type DcmImageProps = { selectedFile: IFileBlob; @@ -52,6 +55,7 @@ const DcmDisplay = (props: DcmImageProps) => { const [multiFrameDisplay, setMultiFrameDisplay] = useState(false); const [isLoadingMore, setIsLoadingMore] = useState(false); const [lastLoadedIndex, setLastLoadedIndex] = useState(0); + const [downloadProgress, setDownloadProgress] = useState(0); // Refs const dicomImageRef = useRef<HTMLDivElement>(null); @@ -118,6 +122,31 @@ const DcmDisplay = (props: DcmImageProps) => { [filteredList, selectedFile.data.id], ); + /** Fetch File Blob */ + + const downloadDicomFile = async (url: string, token: string) => { + try { + const response = await axios.get(url, { + responseType: "blob", + headers: { + Authorization: `Token ${token}`, + }, + onDownloadProgress: (progressEvent: AxiosProgressEvent) => { + if (progressEvent.total) { + const percentCompleted = Math.round( + (progressEvent.loaded * 100) / progressEvent.total, + ); + setDownloadProgress(percentCompleted); + } + }, + }); + return response.data; // This is the Blob + } catch (e) { + // biome-ignore lint/complexity/noUselessCatch: <explanation> + throw e; + } + }; + /** * Preview the selected DICOM file. * If the image is already cached, it uses the cached data. @@ -155,7 +184,9 @@ const DcmDisplay = (props: DcmImageProps) => { } // Load new image if not in cache - const blob = await selectedFile.getFileBlob(); + + const url = stupidlyGetFileResourceUrl(selectedFile); + const blob = await downloadDicomFile(url, selectedFile.auth.token); const imageData = await loadDicomImage(blob); const { framesCount, imageID } = imageData; @@ -186,8 +217,7 @@ const DcmDisplay = (props: DcmImageProps) => { cacheRef.current[CACHE_KEY] = newImageStack; return newImageStack; } catch (e) { - // biome-ignore lint/complexity/noUselessCatch: <explanation> - throw e; + throw new Error("Failed to load the dicom image"); } }; @@ -201,6 +231,7 @@ const DcmDisplay = (props: DcmImageProps) => { useEffect(() => { if (isError) { + console.log("Error", error); notification.error({ message: "Error Loading DICOM Image", description: @@ -443,7 +474,9 @@ const DcmDisplay = (props: DcmImageProps) => { return ( <> - {loadingFirstFrame && <SpinContainer title="Displaying image..." />} + {downloadProgress > 0 && downloadProgress < 100 && ( + <Progress percent={downloadProgress} /> + )} <div id="content" ref={dicomImageRef} diff --git a/src/components/Preview/displays/NiiVueDisplay.tsx b/src/components/Preview/displays/NiiVueDisplay.tsx index d1a58e797..75e5facf4 100644 --- a/src/components/Preview/displays/NiiVueDisplay.tsx +++ b/src/components/Preview/displays/NiiVueDisplay.tsx @@ -1,4 +1,3 @@ -import { Collection } from "@fnndsc/chrisapi"; import { SLICE_TYPE } from "@niivue/niivue"; import { FreeSurferColorLUT, @@ -9,6 +8,7 @@ import React from "react"; import type { IFileBlob } from "../../../api/model.ts"; import SizedNiivueCanvas from "../../SizedNiivueCanvas"; import styles from "./NiiVueDisplay.module.css"; +import { stupidlyGetFileResourceUrl } from "./dicomUtils/utils.ts"; type NiiVueDisplayProps = { selectedFile?: IFileBlob; @@ -97,22 +97,5 @@ const NiiVueDisplay: React.FC<NiiVueDisplayProps> = ({ selectedFile }) => { ); }; -/** - * Get the `file_resource` URL. (Collection+JSON is very annoying). - * - * FIXME: there is a huge inefficiency here. - * Prior to the rendering of the {@link NiiVueDisplay} component, the file - * data was already retrieved by ChRIS_ui, and its blob data are stored in - * the props. But for NiiVue to work (well) it wants the file's URL to - * retrieve the file itself. So the file is retrieved a total of two times, - * even though it should only be retrieved once. - */ -function stupidlyGetFileResourceUrl(file: IFileBlob): string { - return Collection.getLinkRelationUrls( - file?.collection.items[0], - "file_resource", - )[0]; -} - const MemoedNiiVueDisplay = React.memo(NiiVueDisplay); export default MemoedNiiVueDisplay; diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index 7ee3b5bc3..e9418b231 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -14,6 +14,8 @@ import { } from "@cornerstonejs/tools"; import dicomParser from "dicom-parser"; import ptScalingMetaDataProvider from "./ptScalingMetaDataProvider"; +import type { IFileBlob } from "../../../../api/model"; +import { Collection } from "@fnndsc/chrisapi"; //@ts-ignore window.cornerstone = cornerstone; @@ -284,3 +286,20 @@ export const displayDicomImage = async ( throw new Error(e as string); } }; + +/** + * Get the `file_resource` URL. (Collection+JSON is very annoying). + * + * FIXME: there is a huge inefficiency here. + * Prior to the rendering of the {@link NiiVueDisplay} component, the file + * data was already retrieved by ChRIS_ui, and its blob data are stored in + * the props. But for NiiVue to work (well) it wants the file's URL to + * retrieve the file itself. So the file is retrieved a total of two times, + * even though it should only be retrieved once. + */ +export function stupidlyGetFileResourceUrl(file: IFileBlob): string { + return Collection.getLinkRelationUrls( + file?.collection.items[0], + "file_resource", + )[0]; +} From 73e40f6dd2ce6a01e19a109772071cb398a284b5 Mon Sep 17 00:00:00 2001 From: PintoGideon <gideonpinto123@gmail.com> Date: Wed, 30 Oct 2024 11:37:06 -0400 Subject: [PATCH 329/337] feat: Update the ui to show file upload progress indicators --- src/components/NewLibrary/components/Cart.tsx | 150 +++++++++++------- .../NewLibrary/components/RadialProgress.tsx | 31 ---- src/components/NewLibrary/utils/longpress.tsx | 10 ++ .../Preview/displays/DcmDisplay.tsx | 10 +- src/store/cart/cartSlice.ts | 16 +- src/store/cart/types.ts | 2 + src/store/cart/uploadSaga.ts | 15 +- 7 files changed, 139 insertions(+), 95 deletions(-) delete mode 100644 src/components/NewLibrary/components/RadialProgress.tsx diff --git a/src/components/NewLibrary/components/Cart.tsx b/src/components/NewLibrary/components/Cart.tsx index 17fb0eb2e..819d3948c 100644 --- a/src/components/NewLibrary/components/Cart.tsx +++ b/src/components/NewLibrary/components/Cart.tsx @@ -21,9 +21,13 @@ import { useAppDispatch, useAppSelector } from "../../../store/hooks"; import { Drawer, List, Popconfirm, Space } from "../../Antd"; import { DotsIndicator, EmptyStateComponent } from "../../Common"; import { CheckCircleIcon, CloseIcon, FileIcon, FolderIcon } from "../../Icons"; -import { ShowInFolder, TitleNameClipped, elipses } from "../utils/longpress"; +import { + ShowInFolder, + TitleNameClipped, + elipses, + formatBytesWithPadding, +} from "../utils/longpress"; import "./Cart.css"; -import ProgressRing from "./RadialProgress"; const Cart = () => { const dispatch = useAppDispatch(); @@ -274,6 +278,7 @@ interface UploadStatusProps { name: string; dispatch: AppDispatch; } + const UploadStatus: React.FC<UploadStatusProps> = ({ status, type, @@ -283,13 +288,13 @@ const UploadStatus: React.FC<UploadStatusProps> = ({ const isError = status.currentStep.includes("Cancelled") || status.currentStep.startsWith("Error"); - const isComplete = - type === "file" - ? (status as FileUploadObject).progress === 100 && - status.currentStep === "Upload Complete" - : (status as FolderUploadObject).done === - (status as FolderUploadObject).total && - status.currentStep === "Upload Complete"; + + // Determine if the upload is complete + const isComplete = status.currentStep === "Upload Complete"; + + // Determine when to show the status text + const showStatusText = + status.currentStep === "Server Processing..." || isError || isComplete; const handleAction = () => { if (status.currentStep === "Uploading...") { @@ -299,53 +304,88 @@ const UploadStatus: React.FC<UploadStatusProps> = ({ } }; - return ( - <List.Item - key={name} - actions={[ - <div key={`status-${name}`}> - <TitleNameClipped value={35} name={status.currentStep} /> - </div>, - isComplete ? ( - <CheckCircleIcon - key={`anon-${name}-progress`} - color="#3E8635" - width="2em" - height="2em" - /> - ) : isError ? ( - <CloseIcon - color="red" - width="2em" - height="2em" - key={`anon-${name}-cancel`} - /> - ) : type === "file" ? ( - <ProgressRing - key={`anon-${name}-progress`} - value={(status as FileUploadObject).progress} - /> - ) : ( - <div key={`anon-${name}-progress`}> - {(status as FolderUploadObject).done}/ - {(status as FolderUploadObject).total} - </div> - ), - <ShowInFolder - isError={isError} - key={`anon-${name}-show`} - path={status.path} - />, - <Button - onClick={handleAction} - variant="secondary" - size="sm" - key={`a-${name}`} - > - {status.currentStep === "Uploading..." ? "Cancel" : "Clear"} - </Button>, - ]} + const loadedBytes = formatBytesWithPadding( + (status as FileUploadObject).loaded || 0, + ); + const totalBytes = formatBytesWithPadding( + (status as FileUploadObject).total || 0, + ); + + // Build the actions array based on the current status + const actions = []; + + if (showStatusText) { + // Conditionally add the status text (e.g., "Server Processing...", errors, completion) + actions.push( + <div key={`status-${name}`}> + <TitleNameClipped value={35} name={status.currentStep} /> + </div>, + ); + } + + if (isComplete) { + // Add the appropriate icon or progress + actions.push( + <CheckCircleIcon + key={`anon-${name}-progress`} + color="#3E8635" + width="2em" + height="2em" + />, + ); + } else if (isError) { + actions.push( + <CloseIcon + color="red" + width="2em" + height="2em" + key={`anon-${name}-cancel`} + />, + ); + } else if (type === "file" && !showStatusText) { + // Show progress during upload + actions.push( + <div + key={`anon-${name}-bytes`} + style={{ + fontFamily: "monospace", + }} + > + {loadedBytes}/{totalBytes} + </div>, + ); + } else if (type === "folder") { + actions.push( + <div key={`anon-${name}-progress`}> + {(status as FolderUploadObject).done}/ + {(status as FolderUploadObject).total} + </div>, + ); + } + + // Add the "Show in Folder" component + actions.push( + <ShowInFolder + isError={isError} + key={`anon-${name}-show`} + path={status.path} + />, + ); + + // Add the action button ("Cancel" or "Clear") + actions.push( + <Button + onClick={handleAction} + variant="secondary" + size="sm" + key={`a-${name}`} > + {status.currentStep === "Uploading..." ? "Cancel" : "Clear"} + </Button>, + ); + + return ( + <List.Item key={name} actions={actions}> <List.Item.Meta avatar={type === "file" ? <FileIcon /> : <FolderIcon />} title={<TitleNameClipped name={name} value={30} />} diff --git a/src/components/NewLibrary/components/RadialProgress.tsx b/src/components/NewLibrary/components/RadialProgress.tsx deleted file mode 100644 index f6caac3da..000000000 --- a/src/components/NewLibrary/components/RadialProgress.tsx +++ /dev/null @@ -1,31 +0,0 @@ -interface ProgressRingProps { - value: number; -} - -const ProgressRing: React.FC<ProgressRingProps> = ({ value }) => { - const radius = 6; - const circumference = radius * 2 * Math.PI; - - // Calculate dashoffset based on progress - const dashoffset = circumference - (value / 100) * circumference; - - return ( - <svg className="progress-ring"> - <title>File Upload Progress - - - ); -}; - -export default ProgressRing; diff --git a/src/components/NewLibrary/utils/longpress.tsx b/src/components/NewLibrary/utils/longpress.tsx index 67e10af56..744329b68 100644 --- a/src/components/NewLibrary/utils/longpress.tsx +++ b/src/components/NewLibrary/utils/longpress.tsx @@ -241,3 +241,13 @@ export const useAssociatedFeed = (folderPath: string) => { enabled: Boolean(feedMatches?.length), }); }; + +export function formatBytesWithPadding(bytes: number): string { + if (bytes === 0) return " 0.00 B "; + const k = 1024; + const dm = 2; // Decimal places + const sizes = [" B ", "KB", "MB", "GB", "TB"]; + const i = Math.floor(Math.log(bytes) / Math.log(k)); + const formattedNumber = (bytes / k ** i).toFixed(dm).padStart(6, " "); + return `${formattedNumber} ${sizes[i]}`; +} diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index fb42614aa..d89a5f003 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -1,10 +1,10 @@ import type { RenderingEngine } from "@cornerstonejs/core"; import { useQuery } from "@tanstack/react-query"; +import { Progress } from "antd"; import axios, { type AxiosProgressEvent } from "axios"; import { useCallback, useEffect, useMemo, useRef, useState } from "react"; import { type IFileBlob, getFileExtension } from "../../../api/model"; import { notification } from "../../Antd"; -import { SpinContainer } from "../../Common"; import useSize from "../../FeedTree/useSize"; import type { ActionState } from "../FileDetailView"; import { @@ -19,7 +19,6 @@ import { stopClip, stupidlyGetFileResourceUrl, } from "./dicomUtils/utils"; -import { Progress } from "antd"; export type DcmImageProps = { selectedFile: IFileBlob; @@ -474,9 +473,6 @@ const DcmDisplay = (props: DcmImageProps) => { return ( <> - {downloadProgress > 0 && downloadProgress < 100 && ( - - )}
{ )}
+ {downloadProgress > 0 && downloadProgress < 100 && ( + + )} + {/* DICOM Image Display */}
, ) { - const { step, fileName, progress, controller, path, type } = - action.payload; + const { + step, + fileName, + progress, + loaded, + total, + controller, + path, + type, + } = action.payload; state.fileUploadStatus[fileName] = { currentStep: step, progress, + loaded, + total, controller, path, type, diff --git a/src/store/cart/types.ts b/src/store/cart/types.ts index 732472710..41aa2db83 100644 --- a/src/store/cart/types.ts +++ b/src/store/cart/types.ts @@ -28,6 +28,8 @@ export type FolderUploadObject = { export type FileUploadObject = { currentStep: string; progress: number; + loaded: number; + total: number; controller: AbortController | null; path: string; type: string; diff --git a/src/store/cart/uploadSaga.ts b/src/store/cart/uploadSaga.ts index 79232e902..530f24583 100644 --- a/src/store/cart/uploadSaga.ts +++ b/src/store/cart/uploadSaga.ts @@ -22,8 +22,9 @@ function createUploadChannel(config: any) { return eventChannel((emitter) => { const onUploadProgress = (progressEvent: AxiosProgressEvent) => { if (progressEvent.progress) { + const { loaded, total } = progressEvent; const progress = Math.round(progressEvent.progress * 100); - emitter({ progress }); + emitter({ progress, loaded, total }); } }; @@ -113,7 +114,7 @@ function* uploadFileBatch( return call(function* () { try { while (true) { - const { progress, response, error, cancelled } = + const { progress, loaded, total, response, error, cancelled } = yield take(uploadChannel); if (cancelled) { @@ -156,6 +157,8 @@ function* uploadFileBatch( updateFileUploadStatus, name, progress, + loaded, + total, response, currentPath, controller, @@ -215,6 +218,8 @@ function* uploadFileBatch( step: "Error: Failed to create a feed", fileName: nameForFeed as string, progress: 0, + loaded: 0, + total: 0, controller: null, path: currentPath, type: "file", @@ -325,6 +330,8 @@ function* handleUploadError( step, fileName: name, progress: 0, + loaded: 0, + total: 0, controller: null, path: currentPath, type: "file", @@ -335,6 +342,8 @@ function* handleUploadError( function* updateFileUploadStatus( name: string, progress: number, + loaded: number, + total: number, response: any, currentPath: string, controller: AbortController, @@ -357,6 +366,8 @@ function* updateFileUploadStatus( step, fileName: name, progress, + loaded, + total, controller, path: currentPath, type: "file", From d447c029ee68e92583bdd663fcd0fac080590ffd Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 1 Nov 2024 13:55:55 -0400 Subject: [PATCH 330/337] feat: Add the 'Install All' button to the Store Page --- .../FeedOutputBrowser/FileBrowser.tsx | 21 ++- .../NewLibrary/components/LibraryTable.tsx | 22 ++- .../Preview/displays/DcmDisplay.tsx | 72 +++++--- .../Preview/displays/DicomCacheContext.tsx | 38 ++++ .../Preview/displays/ViewerDisplay.tsx | 4 +- .../Preview/displays/dicomUtils/utils.ts | 5 +- src/components/Store/index.tsx | 163 +++++++++++++++++- 7 files changed, 268 insertions(+), 57 deletions(-) create mode 100644 src/components/Preview/displays/DicomCacheContext.tsx diff --git a/src/components/FeedOutputBrowser/FileBrowser.tsx b/src/components/FeedOutputBrowser/FileBrowser.tsx index 9036a9057..de4c1420d 100644 --- a/src/components/FeedOutputBrowser/FileBrowser.tsx +++ b/src/components/FeedOutputBrowser/FileBrowser.tsx @@ -40,6 +40,7 @@ import { OperationContext } from "../NewLibrary/context"; import FileDetailView from "../Preview/FileDetailView"; import XtkViewer from "../XtkViewer/XtkViewer"; import type { FileBrowserProps } from "./types"; +import { DicomCacheProvider } from "../Preview/displays/DicomCacheContext"; const previewAnimation = [{ opacity: "0.0" }, { opacity: "1.0" }]; @@ -354,15 +355,17 @@ const FileBrowser = (props: FileBrowserProps) => { {drawerState.preview.currentlyActive === "preview" && selectedFile && ( - + + + )} {drawerState.preview.currentlyActive === "xtk" && } diff --git a/src/components/NewLibrary/components/LibraryTable.tsx b/src/components/NewLibrary/components/LibraryTable.tsx index 34d4f5b77..39e3095e8 100644 --- a/src/components/NewLibrary/components/LibraryTable.tsx +++ b/src/components/NewLibrary/components/LibraryTable.tsx @@ -35,6 +35,7 @@ import { FolderContextMenu } from "./ContextMenu"; import { getFileName, getLinkFileName } from "./FileCard"; import { getFolderName } from "./FolderCard"; import TruncatedText from "./TruncatedText"; +import { DicomCacheProvider } from "../../Preview/displays/DicomCacheContext"; interface TableProps { data: { @@ -297,15 +298,17 @@ const LibraryTable: React.FC = ({ placement="right" > {selectedFile && ( - + + + )} = ({ origin={origin} /> ))} + {data.files.map((resource: FileBrowserFolderFile, index) => ( { filesLoading, actionState, } = props; + const { cache, setCache } = useDicomCache(); // State variables const [currentImageIndex, setCurrentImageIndex] = useState(0); @@ -61,13 +63,10 @@ const DcmDisplay = (props: DcmImageProps) => { const elementRef = useRef(null); const renderingEngineRef = useRef(null); const activeViewportRef = useRef(null); - const cacheRef = useRef<{ [key: string]: ImageStackType }>({ - [CACHE_KEY]: {}, - }); // Derived values const size = useSize(dicomImageRef); - const cacheStack = cacheRef.current[CACHE_KEY]; + const cacheStack = cache[CACHE_KEY] || {}; const fname = selectedFile.data.fname; /** @@ -173,10 +172,12 @@ const DcmDisplay = (props: DcmImageProps) => { setMultiFrameDisplay(false); } - await activeViewportRef.current.setStack( - imageIDs, - index !== -1 ? index : 0, - ); + // Ensure index is valid + if (index < 0 || index >= imageIDs.length) { + index = 0; + } + + await activeViewportRef.current.setStack(imageIDs, index); activeViewportRef.current.render(); setCurrentImageIndex(index); return cacheStack; @@ -212,11 +213,18 @@ const DcmDisplay = (props: DcmImageProps) => { activeViewportRef.current = viewport; renderingEngineRef.current = renderingEngine; setImageStack(newImageStack); - setCurrentImageIndex(selectedIndex); - cacheRef.current[CACHE_KEY] = newImageStack; + setCurrentImageIndex(selectedIndex || 0); + // Update the cache using the context + setCache(() => { + const updatedCache = { + [CACHE_KEY]: newImageStack, + }; + return updatedCache; + }); return newImageStack; } catch (e) { - throw new Error("Failed to load the dicom image"); + // biome-ignore lint/complexity/noUselessCatch: + throw e; } }; @@ -230,12 +238,9 @@ const DcmDisplay = (props: DcmImageProps) => { useEffect(() => { if (isError) { - console.log("Error", error); notification.error({ - message: "Error Loading DICOM Image", - description: - (error as Error)?.message || - "An error occurred while loading the DICOM Image", + message: error.name, + description: (error as Error)?.message, }); } }, [isError, error]); @@ -251,12 +256,12 @@ const DcmDisplay = (props: DcmImageProps) => { /** * Clean up when the component unmounts. - * Destroys the rendering engine and clears caches and intervals. + * Destroys the rendering engine and clears intervals. */ useEffect(() => { return () => { renderingEngineRef.current?.destroy(); - cacheRef.current = { [CACHE_KEY]: {} }; + setIsLoadingMore(false); setLastLoadedIndex(0); setImageStack({}); @@ -273,7 +278,6 @@ const DcmDisplay = (props: DcmImageProps) => { /** * Start cine playback. */ - const startCinePlay = useCallback(() => { if (elementRef.current) { const clipOptions = { @@ -331,8 +335,11 @@ const DcmDisplay = (props: DcmImageProps) => { setImageStack(cacheStack); if (activeViewportRef.current) { const imageIDs = Object.values(cacheStack).flat() as string[]; - await activeViewportRef.current.setStack(imageIDs, selectedIndex); + // Ensure currentImageIndex is within bounds + const index = Math.min(currentImageIndex, imageIDs.length - 1); + await activeViewportRef.current.setStack(imageIDs, index); activeViewportRef.current.render(); + setCurrentImageIndex(index); } return; } @@ -340,32 +347,38 @@ const DcmDisplay = (props: DcmImageProps) => { setIsLoadingMore(true); const generator = imageFileGenerator(filteredList, lastLoadedIndex); const newImages: ImageStackType = {}; - for (let next = generator.next(); !next.done; next = generator.next()) { const file = next.value; if (cacheStack[file.data.fname]) { continue; // Skip if already in cache } - const blob = await file.getFileBlob(); const imageData = await loadDicomImage(blob); newImages[file.data.fname] = imageData.imageID; } - const updatedImageStack = { ...cacheStack, ...newImages }; setImageStack(updatedImageStack); - cacheRef.current[CACHE_KEY] = updatedImageStack; + // Update the cache using the context + setCache(() => { + const updatedCache = { + [CACHE_KEY]: updatedImageStack, + }; + return updatedCache; + }); if (activeViewportRef.current) { const imageIDs = Object.values(updatedImageStack).flat() as string[]; - await activeViewportRef.current.setStack(imageIDs, selectedIndex); + // Ensure currentImageIndex is within bounds + const index = Math.min(currentImageIndex, imageIDs.length - 1); + await activeViewportRef.current.setStack(imageIDs, index); activeViewportRef.current.render(); + setCurrentImageIndex(index); } setLastLoadedIndex(lastLoadedIndex + Object.keys(newImages).length); setIsLoadingMore(false); }, - [cacheStack, lastLoadedIndex, selectedIndex, loadDicomImage], + [cacheStack, lastLoadedIndex, currentImageIndex, loadDicomImage], ); // Check if the first frame is still loading @@ -408,7 +421,9 @@ const DcmDisplay = (props: DcmImageProps) => { (!multiFrameDisplay && Object.keys(imageStack).length > 1) ) { const newIndex = activeViewportRef.current.getCurrentImageIdIndex(); - setCurrentImageIndex(newIndex); + if (newIndex !== currentImageIndex) { + setCurrentImageIndex(newIndex); + } } if ( @@ -429,6 +444,7 @@ const DcmDisplay = (props: DcmImageProps) => { filesLoading, loadingFirstFrame, handlePagination, + currentImageIndex, ]); // Add event listener for image rendered event @@ -504,7 +520,7 @@ const DcmDisplay = (props: DcmImageProps) => { {/* Loading More Indicator */} {isLoadingMore && (
- Loading more... + More Files are being loaded...
)} diff --git a/src/components/Preview/displays/DicomCacheContext.tsx b/src/components/Preview/displays/DicomCacheContext.tsx new file mode 100644 index 000000000..6d356ba99 --- /dev/null +++ b/src/components/Preview/displays/DicomCacheContext.tsx @@ -0,0 +1,38 @@ +// DicomCacheContext.tsx + +import type React from "react"; +import { createContext, useContext, useState } from "react"; + +type ImageStackType = { + [key: string]: string | string[]; +}; + +type DicomCacheContextType = { + cache: { [key: string]: ImageStackType }; + setCache: React.Dispatch< + React.SetStateAction<{ [key: string]: ImageStackType }> + >; +}; + +const DicomCacheContext = createContext( + undefined, +); + +export const useDicomCache = () => { + const context = useContext(DicomCacheContext); + if (!context) { + throw new Error("useDicomCache must be used within a DicomCacheProvider"); + } + return context; +}; + +export const DicomCacheProvider = ({ + children, +}: { children: React.ReactNode }) => { + const [cache, setCache] = useState<{ [key: string]: ImageStackType }>({}); + return ( + + {children} + + ); +}; diff --git a/src/components/Preview/displays/ViewerDisplay.tsx b/src/components/Preview/displays/ViewerDisplay.tsx index f33537dc7..b85fa80e3 100644 --- a/src/components/Preview/displays/ViewerDisplay.tsx +++ b/src/components/Preview/displays/ViewerDisplay.tsx @@ -1,4 +1,6 @@ +import type { FileBrowserFolderFile, PACSFile } from "@fnndsc/chrisapi"; import type * as React from "react"; +import type { IFileBlob } from "../../../api/model"; import type { ActionState } from "../FileDetailView"; import { CatchallDisplay, @@ -12,8 +14,6 @@ import { VideoDisplay, XtkDisplay, } from "./index"; -import type { FileBrowserFolderFile, PACSFile } from "@fnndsc/chrisapi"; -import type { IFileBlob } from "../../../api/model"; const components = { JsonDisplay, diff --git a/src/components/Preview/displays/dicomUtils/utils.ts b/src/components/Preview/displays/dicomUtils/utils.ts index e9418b231..1048f3d1b 100644 --- a/src/components/Preview/displays/dicomUtils/utils.ts +++ b/src/components/Preview/displays/dicomUtils/utils.ts @@ -200,8 +200,9 @@ export const loadDicomImage = async (blob: Blob) => { imageID, framesCount, }; - } catch (e) { - throw new Error(`Error loading the DICOM image: ${(e as Error).message}`); + } catch (e: any) { + const error_message = e?.error?.message || "Failed to load"; + throw new Error(`${error_message}`); } }; diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index 1231d68e3..6fc815173 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -32,7 +32,7 @@ import { } from "@patternfly/react-core"; import { useMutation, useQuery, useQueryClient } from "@tanstack/react-query"; import { format } from "date-fns"; -import { type Ref, useEffect, useState, useCallback, useMemo } from "react"; +import { type Ref, useCallback, useEffect, useMemo, useState } from "react"; import { Cookies, useCookies } from "react-cookie"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useAppSelector } from "../../store/hooks"; @@ -40,6 +40,7 @@ import { Alert, Spin, notification } from "../Antd"; import { SpinContainer } from "../Common"; import { CheckCircleIcon, SearchIcon } from "../Icons"; import "../SinglePlugin/singlePlugin.css"; +import { useMediaQuery } from "react-responsive"; import { InfoSection } from "../Common"; import { fetchPluginForMeta, @@ -67,6 +68,15 @@ const Store: React.FC = () => { >([]); const [dropdown, setDropdown] = useState(false); + // New state variables + const [installingPluginInfo, setInstallingPluginInfo] = useState<{ + name: string; + version: string; + } | null>(null); + const [installationErrors, setInstallationErrors] = useState([]); + + const isMobile = useMediaQuery({ maxWidth: 768 }); + const defaultStoreURL = import.meta.env.VITE_CHRIS_STORE_URL; const localCubeURL = import.meta.env.VITE_CHRIS_UI_URL; const cookies = new Cookies(); @@ -218,6 +228,105 @@ const Store: React.FC = () => { } }; + const bulkInstallPlugins = async (pluginsWithVersions: Plugin[]) => { + const failedPlugins = []; + const installedPlugins = []; + + const notificationKey = "installing-plugins"; + for (const selectedPlugin of pluginsWithVersions) { + if (selectedPlugin) { + try { + // Update the state to indicate which plugin is being installed + setInstallingPluginInfo({ + name: selectedPlugin.data.name, + version: selectedPlugin.data.version, + }); + + if (isMobile) { + api.info({ + key: notificationKey, + message: "Installing Plugins", + description: ( + + Installing plugin: {selectedPlugin.data.name} version:{" "} + {selectedPlugin.data.version} + + ), + duration: 0, + }); + } + + await handleInstall(selectedPlugin); + installedPlugins.push(selectedPlugin.data.name); + } catch (error: any) { + failedPlugins.push({ + name: selectedPlugin.data.name, + error: error.message, + }); + api.destroy(notificationKey); + } + } + } + // After installation is complete, reset the installingPluginInfo + setInstallingPluginInfo(null); + api.destroy(notificationKey); + if (failedPlugins.length > 0) { + // Update the installationErrors state + setInstallationErrors( + failedPlugins.map((fp) => `${fp.name}: ${fp.error}`), + ); + throw new Error("Failed to install some plugins"); + } + + return installedPlugins; + }; + + const bulkInstallMutation = useMutation({ + mutationFn: bulkInstallPlugins, + onSuccess: () => { + api.success({ + message: "All selected plugins were successfully installed.", + }); + // Invalidate queries to refresh installed plugins + queryClient.invalidateQueries({ queryKey: ["existingStorePlugins"] }); + }, + onError: () => { + api.error({ + message: "Failed to install the plugins", + description: ( +
    + {installationErrors.map((error, index) => ( + // biome-ignore lint/suspicious/noArrayIndexKey: +
  • {error}
    • + ))} +
+ ), + }); + }, + }); + + const handleInstallAll = async () => { + // Ensure configuration is set + if (!username || !password || !computeResource || !configureURL) { + setIsConfigModalOpen(true); + return; + } + + const pluginsToInstall = data?.pluginMetaList || []; + + // For each plugin, determine the selected version or default version + const pluginsWithVersions = pluginsToInstall.map((plugin) => { + const selectedVersion = version[plugin.data.id] || plugin.data.version; + const selectedPlugin = plugin.data.plugins.find( + (p: any) => p.data.version === selectedVersion, + ); + return selectedPlugin; + }); + + // Trigger the mutation + bulkInstallMutation.mutate(pluginsWithVersions); + }; + const handleInstallMutation = useMutation({ mutationFn: (selectedPlugin: Plugin) => handleInstall(selectedPlugin), onSuccess: (_data) => { @@ -277,10 +386,14 @@ const Store: React.FC = () => { description: "Your configuration has been saved successfully.", duration: 1, }); - // If there is a plugin pending installation, proceed to install if (installingPlugin) { + // If there is a plugin pending installation, proceed to install handleSave(); } + + if (bulkInstallMutation.isIdle) { + handleInstallAll(); + } }; const TitleComponent = useMemo( @@ -393,17 +506,53 @@ const Store: React.FC = () => { -
- - You are currently viewing plugins fetched from {configureURL} - + + You are currently viewing plugins fetched from {configureURL} + +
+ + {/* Display installation progress */} + + {bulkInstallMutation.isPending && + installingPluginInfo && + !isMobile && ( + + {" "} + Installing plugin: {installingPluginInfo.name} version:{" "} + {installingPluginInfo.version} + + } + style={{ height: "100%", padding: "0.75em" }} + /> + )}
From 807990ad7fad721cd77733074e389d102262c251 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 1 Nov 2024 14:53:09 -0400 Subject: [PATCH 331/337] feat: Add filters to the store page --- src/api/common.ts | 10 +-- .../PipelinesCopy/PipelineUpload.tsx | 2 +- src/components/PipelinesCopy/TitleChange.tsx | 4 +- src/components/PipelinesCopy/index.tsx | 5 -- .../PipelinesCopy/useDownloadSource.tsx | 10 +-- src/components/PipelinesCopy/utils.ts | 9 +-- src/components/Store/index.tsx | 78 +++++++++++++------ 7 files changed, 66 insertions(+), 52 deletions(-) diff --git a/src/api/common.ts b/src/api/common.ts index 561dc2cd3..d5bb7a3b1 100644 --- a/src/api/common.ts +++ b/src/api/common.ts @@ -16,13 +16,6 @@ export function elipses(str: string, len: number) { return `${str.slice(0, len - 3)}...`; } -interface FetchParams { - limit: number; - offset: number; - fname_icontains?: string; - fname_nslashes?: string; -} - export interface TreeType { id: number; plugin_id: number; @@ -174,8 +167,7 @@ export const fetchResource = async ( // Type Definitions interface FetchParams { - limit: number; - offset: number; + [key: string]: string | number; } interface FetchResourcesResult { diff --git a/src/components/PipelinesCopy/PipelineUpload.tsx b/src/components/PipelinesCopy/PipelineUpload.tsx index 71cf47de0..ae28c97b3 100644 --- a/src/components/PipelinesCopy/PipelineUpload.tsx +++ b/src/components/PipelinesCopy/PipelineUpload.tsx @@ -5,6 +5,7 @@ import { isEmpty } from "lodash"; import { useRef, useState } from "react"; import { Cookies } from "react-cookie"; import ChrisAPIClient from "../../api/chrisapiclient"; +import { useAppSelector } from "../../store/hooks"; import { Alert } from "../Antd"; import { fetchPluginMetasFromStore, @@ -12,7 +13,6 @@ import { } from "../PipelinesCopy/utils"; import { uploadPipelineSourceFile } from "./utils"; import { extractPluginInfo } from "./utils"; -import { useAppSelector } from "../../store/hooks"; interface Notification { type: "warning" | "success" | "info" | "error" | undefined; description: string; diff --git a/src/components/PipelinesCopy/TitleChange.tsx b/src/components/PipelinesCopy/TitleChange.tsx index 76f6049b3..ad6e78517 100644 --- a/src/components/PipelinesCopy/TitleChange.tsx +++ b/src/components/PipelinesCopy/TitleChange.tsx @@ -1,8 +1,8 @@ import type { Pipeline, PluginPiping } from "@fnndsc/chrisapi"; -import { Alert, Form, Space } from "../Antd"; +import { Button, TextInput } from "@patternfly/react-core"; import { useContext, useEffect, useState } from "react"; +import { Alert, Form, Space } from "../Antd"; import { PipelineContext, Types } from "./context"; -import { TextInput, Button } from "@patternfly/react-core"; type OwnProps = { currentPipeline: Pipeline; diff --git a/src/components/PipelinesCopy/index.tsx b/src/components/PipelinesCopy/index.tsx index 62eb05c06..6609c6b63 100644 --- a/src/components/PipelinesCopy/index.tsx +++ b/src/components/PipelinesCopy/index.tsx @@ -25,11 +25,6 @@ import { Types, } from "./context"; import { DownloadIcon } from "@patternfly/react-icons"; -import ChrisAPIClient from "../../api/chrisapiclient"; -import type { - PipelineSourceFile, - PipelineSourceFileList, -} from "@fnndsc/chrisapi"; import { useDownloadSource } from "./useDownloadSource"; type LoadingResources = { diff --git a/src/components/PipelinesCopy/useDownloadSource.tsx b/src/components/PipelinesCopy/useDownloadSource.tsx index 4469ab506..ed60a1a80 100644 --- a/src/components/PipelinesCopy/useDownloadSource.tsx +++ b/src/components/PipelinesCopy/useDownloadSource.tsx @@ -1,12 +1,12 @@ +import type { + Pipeline, + PipelineSourceFile, + PipelineSourceFileList, +} from "@fnndsc/chrisapi"; // hooks/useDownloadPipeline.ts import { useMutation } from "@tanstack/react-query"; import { notification } from "antd"; import ChrisAPIClient from "../../api/chrisapiclient"; -import type { - PipelineSourceFileList, - PipelineSourceFile, - Pipeline, -} from "@fnndsc/chrisapi"; const fetchPipelineSourceFiles = async (pipeline: Pipeline) => { const client = ChrisAPIClient.getClient(); diff --git a/src/components/PipelinesCopy/utils.ts b/src/components/PipelinesCopy/utils.ts index b5b1e78cb..c04b9b478 100644 --- a/src/components/PipelinesCopy/utils.ts +++ b/src/components/PipelinesCopy/utils.ts @@ -3,12 +3,9 @@ import type Client from "@fnndsc/chrisapi"; import axios from "axios"; import { fetchResource } from "../../api/common"; -interface Params { - limit: number; - offset: number; - name?: string; - name_exact?: string; -} +type Params = { + [key: string]: string | number; +}; /** * Fetches plugin metadata from the ChRIS store. diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index 6fc815173..2ec6d15d5 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -6,7 +6,7 @@ import Client, { import { ActionGroup, Badge, - Button, + Button as PFButton, Card, CardBody, Form, @@ -20,7 +20,7 @@ import { type MenuToggleElement, Modal, PageSection, - Select, + Select as PFSelect, SelectOption, Split, SplitItem, @@ -36,7 +36,7 @@ import { type Ref, useCallback, useEffect, useMemo, useState } from "react"; import { Cookies, useCookies } from "react-cookie"; import ChrisAPIClient from "../../api/chrisapiclient"; import { useAppSelector } from "../../store/hooks"; -import { Alert, Spin, notification } from "../Antd"; +import { Alert, Spin, notification, Dropdown, type MenuProps } from "antd"; // Imported Menu and Dropdown from antd import { SpinContainer } from "../Common"; import { CheckCircleIcon, SearchIcon } from "../Icons"; import "../SinglePlugin/singlePlugin.css"; @@ -48,6 +48,7 @@ import { handleInstallPlugin, } from "../PipelinesCopy/utils"; import WrapperConnect from "../Wrapper"; +import { DownOutlined } from "@ant-design/icons"; // Imported DownOutlined icon const Store: React.FC = () => { const isStaff = useAppSelector((state) => state.user.isStaff); @@ -67,6 +68,9 @@ const Store: React.FC = () => { string[] >([]); const [dropdown, setDropdown] = useState(false); + const [searchField, setSearchField] = useState< + "name" | "category" | "authors" + >("name"); // New state variables const [installingPluginInfo, setInstallingPluginInfo] = useState<{ @@ -155,17 +159,21 @@ const Store: React.FC = () => { document.title = "Store Catalog"; setTempURLValue(configure_url || defaultStoreURL); setConfigureURL(configure_url || defaultStoreURL); - }, [isStaff, configure_url, defaultStoreURL, isLoggedIn]); + }, [configure_url]); const fetchPlugins = useCallback( async (search: string) => { const client = new Client(configureURL); try { - const params = { + const params: { + [key: string]: number | string; + } = { limit: 20, offset: 0, - name: search.trim().toLowerCase(), }; + if (search.trim() !== "") { + params[searchField] = search.trim().toLowerCase(); + } const pluginMetas = await fetchPluginMetas(client, params); const newPluginPayload = await Promise.all( @@ -181,7 +189,7 @@ const Store: React.FC = () => { throw error; } }, - [configureURL], + [configureURL, searchField], ); const fetchExistingPlugins = useCallback(async () => { @@ -344,7 +352,7 @@ const Store: React.FC = () => { }); const { data, isLoading, isError, error } = useQuery({ - queryKey: ["storePlugins", search, configureURL], + queryKey: ["storePlugins", search, configureURL, searchField], queryFn: () => fetchPlugins(search), retry: false, }); @@ -406,6 +414,18 @@ const Store: React.FC = () => { [], ); + const items: MenuProps["items"] = [ + { + key: "name", + label: "Name", + }, + { key: "category", label: "Category" }, + { + key: "authors", + label: "Author", + }, + ]; + return ( {contextHolder} @@ -451,7 +471,7 @@ const Store: React.FC = () => { {computeResourceOptions.length > 0 ? ( - + ) : ( { )} - - + @@ -518,14 +541,14 @@ const Store: React.FC = () => { height: "40px", }} > - - + {/* Display installation progress */} {bulkInstallMutation.isPending && @@ -556,16 +579,23 @@ const Store: React.FC = () => {
- + setSearch(value)} icon={} - placeholder="Search for plugins by name" + placeholder={`Search for plugins by ${searchField}`} /> + + + + {`Filter by: ${searchField}`} + + + {isLoading && } @@ -639,7 +669,7 @@ const Store: React.FC = () => {
Installed
) : ( - + )} @@ -714,7 +744,7 @@ const VersionSelect = ({ ); return ( - + ); }; From 33edd2853ac1967f206bfe3ccc3f8774f89480a6 Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 1 Nov 2024 15:01:25 -0400 Subject: [PATCH 332/337] feat: Add a loading spinner to Dcm Display --- src/components/Preview/displays/DcmDisplay.tsx | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/src/components/Preview/displays/DcmDisplay.tsx b/src/components/Preview/displays/DcmDisplay.tsx index 4c03c4ea8..9a24a99fb 100644 --- a/src/components/Preview/displays/DcmDisplay.tsx +++ b/src/components/Preview/displays/DcmDisplay.tsx @@ -5,8 +5,10 @@ import axios, { type AxiosProgressEvent } from "axios"; import { useCallback, useEffect, useMemo, useRef, useState } from "react"; import { type IFileBlob, getFileExtension } from "../../../api/model"; import { notification } from "../../Antd"; +import { SpinContainer } from "../../Common"; import useSize from "../../FeedTree/useSize"; import type { ActionState } from "../FileDetailView"; +import { useDicomCache } from "./DicomCacheContext"; import { events, type IStackViewport, @@ -19,7 +21,6 @@ import { stopClip, stupidlyGetFileResourceUrl, } from "./dicomUtils/utils"; -import { useDicomCache } from "./DicomCacheContext"; export type DcmImageProps = { selectedFile: IFileBlob; @@ -487,6 +488,8 @@ const DcmDisplay = (props: DcmImageProps) => { } }, [actionState]); + const showProgress = downloadProgress > 0 && downloadProgress < 100; + return ( <>
{
)} - - {downloadProgress > 0 && downloadProgress < 100 && ( - + {isLoading && !showProgress && ( + )} + {showProgress && } {/* DICOM Image Display */}
Date: Fri, 1 Nov 2024 15:21:51 -0400 Subject: [PATCH 333/337] fix: Filtering bug --- src/components/Store/index.tsx | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/src/components/Store/index.tsx b/src/components/Store/index.tsx index 2ec6d15d5..dcdbb1510 100644 --- a/src/components/Store/index.tsx +++ b/src/components/Store/index.tsx @@ -418,11 +418,17 @@ const Store: React.FC = () => { { key: "name", label: "Name", + onClick: () => setSearchField("name"), + }, + { + key: "category", + label: "Category", + onClick: () => setSearchField("category"), }, - { key: "category", label: "Category" }, { key: "authors", label: "Author", + onClick: () => setSearchField("authors"), }, ]; From 68c6794ad11eda26e735181af06c8acde1a49c67 Mon Sep 17 00:00:00 2001 From: Rudolph Pienaar Date: Mon, 4 Nov 2024 13:40:09 -0500 Subject: [PATCH 334/337] Add CITATION.cffwq --- CITATION.cff | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 CITATION.cff diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 000000000..ec49e5230 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,32 @@ +cff-version: 1.2.0 +message: If you use this software, please cite it as below. +title: ChRIS User Interface +version: 2.0.0 +date-released: 2024-11-04 +repository-code: https://github.com/FNNDSC/ChRIS_ui +license: MIT +type: software +authors: + - family-names: Gideon + given-names: Pinto + - family-names: Zhang + given-names: Jennings + orcid: https://orcid.org/0000-0001-6473-3316 + - family-names: Pienaar + given-names: Rudolph + orcid: https://orcid.org/0000-0002-8684-3185 +keywords: + - ChRIS + - web-based user interface + - medical imaging + - DICOM + - PACS +abstract: | + ChRIS_ui is the reference user interface for the ChRIS project. This interface is a web-based + and communicates with the core underlying backend (CUBE) to provide a full and rich interface + experience, including an internal filesystem browser, many built-in image file type rendering + support, management of computational workflows, sharing of data and results, and much more. +references: + - type: software + title: "ChRIS Backend" + url: "https://github.com/FNNDSC/ChRIS_ultron_backEnd" From a6b6506df50919215349efca58569b6fa9dd1e8a Mon Sep 17 00:00:00 2001 From: Rudolph Pienaar Date: Mon, 4 Nov 2024 13:43:59 -0500 Subject: [PATCH 335/337] Update authors --- CITATION.cff | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index ec49e5230..e38df16ca 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -7,8 +7,12 @@ repository-code: https://github.com/FNNDSC/ChRIS_ui license: MIT type: software authors: - - family-names: Gideon - given-names: Pinto + - family-names: Pinto + given-names: Gideon + - family-names: Samal + given-names: Sandip + - family-names: Ruisel-Bernal + given-names: Jorge - family-names: Zhang given-names: Jennings orcid: https://orcid.org/0000-0001-6473-3316 From dd045b3e678bd5338567aeea4eaa4551a27bb63f Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Tue, 5 Nov 2024 12:58:57 -0500 Subject: [PATCH 336/337] feat: Update SignUp and SimpleLoginPage components to use updated useSignUpAllowed hook --- src/components/Login/index.tsx | 84 +++++++++++++++------------------ src/components/Signup/index.tsx | 66 +++++++++++++++++++++++++- src/store/hooks.ts | 69 ++++++++++++++++++++++++++- 3 files changed, 170 insertions(+), 49 deletions(-) diff --git a/src/components/Login/index.tsx b/src/components/Login/index.tsx index 467684f73..72ae1eff3 100644 --- a/src/components/Login/index.tsx +++ b/src/components/Login/index.tsx @@ -1,7 +1,5 @@ import ChrisApiClient from "@fnndsc/chrisapi"; import { - HelperText, - HelperTextItem, ListItem, ListVariant, LoginFooterItem, @@ -9,34 +7,37 @@ import { LoginMainFooterBandItem, LoginPage, } from "@patternfly/react-core"; +import { App } from "antd"; import queryString from "query-string"; -import React from "react"; +// src/components/LoginPage/SimpleLoginPage.tsx +import type React from "react"; +import { useState } from "react"; import { useCookies } from "react-cookie"; import { Link, useLocation, useNavigate } from "react-router-dom"; import ChrisAPIClient from "../../api/chrisapiclient"; import ChRIS_Logo_Inline from "../../assets/chris-logo-inline.png"; import ChRIS_Logo from "../../assets/chris-logo.png"; +import { useAppDispatch } from "../../store/hooks.ts"; import { setAuthTokenSuccess } from "../../store/user/userSlice"; -import { ExclamationCircleIcon } from "../Icons"; import "./Login.css"; -import { useAppDispatch } from "../../store/hooks.ts"; +import { useSignUpAllowed } from "../../store/hooks.ts"; + +type Status = "idle" | "loading" | "success" | "error"; export const SimpleLoginPage: React.FunctionComponent = () => { const navigate = useNavigate(); const location = useLocation(); const dispatch = useAppDispatch(); const [_cookies, setCookie] = useCookies([""]); - const [showHelperText, setShowHelperText] = React.useState(false); - const [username, setUsername] = React.useState(""); - const [isValidUsername, setIsValidUsername] = React.useState(true); - const [password, setPassword] = React.useState(""); - const [isValidPassword, setIsValidPassword] = React.useState(true); - const [errorMessage, setErrorMessage] = React.useState(""); - - enum LoginErrorMessage { - invalidCredentials = "Invalid Credentials", - serverError = "There was a problem connecting to the server!", - } + const [username, setUsername] = useState(""); + const [password, setPassword] = useState(""); + const [status, setStatus] = useState("idle"); + + // Use the custom hook + const { signUpAllowed } = useSignUpAllowed(); + + // Use the message API from Ant Design + const { message } = App.useApp(); async function handleSubmit( event: @@ -46,10 +47,15 @@ export const SimpleLoginPage: React.FunctionComponent = () => { event.preventDefault(); const authURL = import.meta.env.VITE_CHRIS_UI_AUTH_URL; - let token: string; + + setStatus("loading"); try { - token = await ChrisApiClient.getAuthToken(authURL, username, password); + const token = await ChrisApiClient.getAuthToken( + authURL, + username, + password, + ); if (token && username) { const oneDayToSeconds = 24 * 60 * 60; setCookie(`${username}_token`, token, { @@ -74,6 +80,8 @@ export const SimpleLoginPage: React.FunctionComponent = () => { }), ); + setStatus("success"); + const { redirectTo } = queryString.parse(location.search) as { redirectTo: string; }; @@ -93,17 +101,13 @@ export const SimpleLoginPage: React.FunctionComponent = () => { navigate("/"); } } - } catch (error: unknown) { - setShowHelperText(true); - // Allows error message to be displayed in red - setIsValidUsername(false); - setIsValidPassword(false); - - setErrorMessage(() => - //@ts-ignore + } catch (error: any) { + setStatus("error"); + message.error( error.response - ? LoginErrorMessage.invalidCredentials - : LoginErrorMessage.serverError, + ? "Invalid Credentials" + : "There was a problem connecting to the server!", + 3, ); } } @@ -122,20 +126,12 @@ export const SimpleLoginPage: React.FunctionComponent = () => { setPassword(value); }; - let helperText: React.ReactNode = null; - if (showHelperText) { - helperText = ( - - {errorMessage} - - ); - } - - const signUpForAccountMessage = ( + // Conditionally render the "Sign up" link based on signUpAllowed state + const signUpForAccountMessage = signUpAllowed ? ( Need an account? Sign up. - ); + ) : null; const forgotCredentials = ( @@ -144,7 +140,7 @@ export const SimpleLoginPage: React.FunctionComponent = () => { ); const listItem = ( - + <> Terms of Use{" "} @@ -160,24 +156,20 @@ export const SimpleLoginPage: React.FunctionComponent = () => { Privacy Policy - + ); const loginForm = ( } usernameLabel="Username" usernameValue={username} onChangeUsername={handleUsernameChange} - isValidUsername={isValidUsername} passwordLabel="Password" passwordValue={password} onChangePassword={handlePasswordChange} - isValidPassword={isValidPassword} onLoginButtonClick={handleSubmit} loginButtonLabel="Log in" + isLoginButtonDisabled={status === "loading"} /> ); diff --git a/src/components/Signup/index.tsx b/src/components/Signup/index.tsx index 05491624e..a681245fb 100644 --- a/src/components/Signup/index.tsx +++ b/src/components/Signup/index.tsx @@ -1,13 +1,75 @@ import { LoginPage } from "@patternfly/react-core"; +import { App, Spin } from "antd"; +import React from "react"; +import { useNavigate } from "react-router-dom"; +import { useSignUpAllowed } from "../../store/hooks"; import SignUpForm from "./SignUpForm"; -const SignUp = () => { +const SignUp: React.FunctionComponent = () => { + const { signUpAllowed, isLoading, isError } = useSignUpAllowed(); + const navigate = useNavigate(); + + // Use the message API from Ant Design + const { message } = App.useApp(); + + React.useEffect(() => { + let timer: NodeJS.Timeout; + + if (!isLoading && !signUpAllowed) { + // If sign-ups are not allowed, show error and redirect after delay + message.error( + "Anonymous sign-ups are not allowed on this platform. Redirecting to login page...", + 3, // Duration in seconds + ); + timer = setTimeout(() => { + navigate("/login"); + }, 3000); // Redirect after 3 seconds + } else if (isError) { + // If there was an error checking sign-up availability + message.error( + "Failed to check sign-up availability. Please try again later. Redirecting to login page...", + 3, + ); + timer = setTimeout(() => { + navigate("/login"); + }, 3000); + } + + // Cleanup the timer if the component unmounts + return () => { + if (timer) { + clearTimeout(timer); + } + }; + }, [signUpAllowed, isLoading, isError, navigate, message]); + + // Determine what content to render inside the LoginPage + let content: React.ReactNode; + if (isLoading) { + // Display a loading spinner while checking sign-up availability + content = ( +
+ +
+ ); + } else if ((!isLoading && !signUpAllowed) || isError) { + // Show a message indicating redirecting + content = ( +
+

Redirecting to the login page...

+
+ ); + } else { + // If sign-ups are allowed, render the sign-up form + content = ; + } + return ( - + {content} ); }; diff --git a/src/store/hooks.ts b/src/store/hooks.ts index ba719d930..75a768996 100644 --- a/src/store/hooks.ts +++ b/src/store/hooks.ts @@ -1,5 +1,11 @@ import type { Feed, FileBrowserFolderFile } from "@fnndsc/chrisapi"; -import { useMutation } from "@tanstack/react-query"; +import { + type UseQueryOptions, + useMutation, + useQuery, +} from "@tanstack/react-query"; +import { App } from "antd"; +import { useEffect } from "react"; import { useDispatch, useSelector } from "react-redux"; import ChrisAPIClient from "../api/chrisapiclient"; import { getFileName } from "../api/common"; @@ -70,3 +76,64 @@ const useDownload = (feed?: Feed) => { }; export default useDownload; + +// src/hooks/useSignUpAllowed.ts + +export const useSignUpAllowed = () => { + // Use the message API from Ant Design + const { message } = App.useApp(); + + const fetchSignUpAllowed = async (): Promise => { + const apiUrl = import.meta.env.VITE_CHRIS_UI_USERS_URL; + + if (!apiUrl) { + throw new Error("URL for fetching the users is not set correctly"); + } + + // Make an unauthenticated GET request to api/v1/users/ + const response = await fetch(apiUrl, { + method: "GET", + }); + + if (!response.ok) { + throw new Error(`Server responded with status ${response.status}`); + } + + // Get the Allow header from the response + const allowHeader = response.headers.get("Allow"); + + return allowHeader?.includes("POST") || false; + }; + + // Explicitly define the type for options + const queryOptions: UseQueryOptions< + boolean, + Error, + boolean, + ["signUpAllowed"] + > = { + queryKey: ["signUpAllowed"], + queryFn: fetchSignUpAllowed, + retry: false, + }; + + const { + data: signUpAllowed, + isLoading, + isError, + error, + } = useQuery(queryOptions); + + // Handle errors using useEffect + useEffect(() => { + if (isError && error) { + message.error( + error.message || + "Failed to check sign-up availability. Please try again later.", + 3, // Duration in seconds + ); + } + }, [isError, error, message]); + + return { signUpAllowed, isLoading, isError, error }; +}; From 36f2dcb927fd246cc9589091ed97dfc0b6466a4d Mon Sep 17 00:00:00 2001 From: PintoGideon Date: Fri, 8 Nov 2024 15:37:26 -0500 Subject: [PATCH 337/337] feat: Update Sign Up --- src/components/Wrapper/Toolbar.tsx | 24 +++++++++++++++--------- 1 file changed, 15 insertions(+), 9 deletions(-) diff --git a/src/components/Wrapper/Toolbar.tsx b/src/components/Wrapper/Toolbar.tsx index 386b27f5d..67ee593b7 100644 --- a/src/components/Wrapper/Toolbar.tsx +++ b/src/components/Wrapper/Toolbar.tsx @@ -18,7 +18,11 @@ import { useMediaQuery } from "react-responsive"; import { useLocation, useNavigate } from "react-router"; import ChrisAPIClient from "../../api/chrisapiclient"; import { clearCartOnLogout } from "../../store/cart/cartSlice"; -import { useAppDispatch, useAppSelector } from "../../store/hooks"; +import { + useAppDispatch, + useAppSelector, + useSignUpAllowed, +} from "../../store/hooks"; import { setLogoutSuccess } from "../../store/user/userSlice"; import { ThemeContext } from "../DarkTheme/useTheme"; import FeedDetails from "../FeedDetails"; @@ -34,7 +38,7 @@ const ToolbarComponent: React.FC = ( props: ToolbarComponentProps, ) => { const isSmallerScreen = useMediaQuery({ maxWidth: 1224 }); - + const { signUpAllowed } = useSignUpAllowed(); const { token, titleComponent } = props; const dispatch = useAppDispatch(); const navigate = useNavigate(); @@ -164,13 +168,15 @@ const ToolbarComponent: React.FC = ( > Login - + {signUpAllowed && ( + + )} )}