From c59500f917e0f759102ddde87747668f1eefa65c Mon Sep 17 00:00:00 2001
From: Jennings Zhang <jenni_zh@protonmail.com>
Date: Fri, 13 Oct 2023 18:44:05 -0400
Subject: [PATCH] Rename to gifit in code

---
 {innerspfit => gifit}/__init__.py  |  0
 {innerspfit => gifit}/__main__.py  |  6 +++---
 {innerspfit => gifit}/gi.py        |  0
 {innerspfit => gifit}/helpers.py   |  2 +-
 {innerspfit => gifit}/model.py     |  0
 {innerspfit => gifit}/models/a.csv |  0
 {innerspfit => gifit}/models/b.csv |  0
 {innerspfit => gifit}/models/c.csv |  0
 setup.py                           | 10 +++++-----
 tests/test_helper.py               |  2 +-
 tests/test_join.py                 |  4 ++--
 tests/test_model.py                | 13 ++++++++++---
 12 files changed, 22 insertions(+), 15 deletions(-)
 rename {innerspfit => gifit}/__init__.py (100%)
 rename {innerspfit => gifit}/__main__.py (96%)
 rename {innerspfit => gifit}/gi.py (100%)
 rename {innerspfit => gifit}/helpers.py (92%)
 rename {innerspfit => gifit}/model.py (100%)
 rename {innerspfit => gifit}/models/a.csv (100%)
 rename {innerspfit => gifit}/models/b.csv (100%)
 rename {innerspfit => gifit}/models/c.csv (100%)

diff --git a/innerspfit/__init__.py b/gifit/__init__.py
similarity index 100%
rename from innerspfit/__init__.py
rename to gifit/__init__.py
diff --git a/innerspfit/__main__.py b/gifit/__main__.py
similarity index 96%
rename from innerspfit/__main__.py
rename to gifit/__main__.py
index 8266045..526f316 100644
--- a/innerspfit/__main__.py
+++ b/gifit/__main__.py
@@ -13,9 +13,9 @@
 from chris_plugin import chris_plugin, PathMapper
 from loguru import logger
 
-from innerspfit import __version__, DISPLAY_TITLE, helpers
-from innerspfit.gi import gyrification_index
-from innerspfit.model import Model
+from gifit import __version__, DISPLAY_TITLE, helpers
+from gifit.gi import gyrification_index
+from gifit.model import Model
 
 parser = ArgumentParser(description='surface_fit wrapper',
                         formatter_class=ArgumentDefaultsHelpFormatter)
diff --git a/innerspfit/gi.py b/gifit/gi.py
similarity index 100%
rename from innerspfit/gi.py
rename to gifit/gi.py
diff --git a/innerspfit/helpers.py b/gifit/helpers.py
similarity index 92%
rename from innerspfit/helpers.py
rename to gifit/helpers.py
index 5e8bb3d..f18b17b 100644
--- a/innerspfit/helpers.py
+++ b/gifit/helpers.py
@@ -2,7 +2,7 @@
 from pathlib import PurePath
 from typing import Iterable
 
-from innerspfit.model import SurfaceFitParams
+from gifit.model import SurfaceFitParams
 
 
 def to_cliargs(sched: Iterable[SurfaceFitParams]) -> Iterable[str]:
diff --git a/innerspfit/model.py b/gifit/model.py
similarity index 100%
rename from innerspfit/model.py
rename to gifit/model.py
diff --git a/innerspfit/models/a.csv b/gifit/models/a.csv
similarity index 100%
rename from innerspfit/models/a.csv
rename to gifit/models/a.csv
diff --git a/innerspfit/models/b.csv b/gifit/models/b.csv
similarity index 100%
rename from innerspfit/models/b.csv
rename to gifit/models/b.csv
diff --git a/innerspfit/models/c.csv b/gifit/models/c.csv
similarity index 100%
rename from innerspfit/models/c.csv
rename to gifit/models/c.csv
diff --git a/setup.py b/setup.py
index 344fd29..2f48a2d 100644
--- a/setup.py
+++ b/setup.py
@@ -26,18 +26,18 @@ def get_version(rel_path: str) -> str:
 
 
 setup(
-    name='innerspfit',
-    version=get_version('innerspfit/__init__.py'),
+    name='gifit',
+    version=get_version('gifit/__init__.py'),
     description='Outer to inner surface mesh deformation using a radial distance map for human fetal MRI',
     author='FNNDSC',
     author_email='Jennings.Zhang@childrens.harvard.edu',
     url='https://github.com/FNNDSC/pl-gifit',
-    packages=['innerspfit'],
+    packages=['gifit'],
     install_requires=['chris_plugin', 'pandas', 'loguru'],
     license='MIT',
     entry_points={
         'console_scripts': [
-            'innerspfit = innerspfit.__main__:main'
+            'gifit = gifit.__main__:main'
         ]
     },
     classifiers=[
@@ -53,7 +53,7 @@ def get_version(rel_path: str) -> str:
         ]
     },
     package_data={
-        'innerspfit': ['models']
+        'gifit': ['models']
     },
     scripts=scripts
 )
diff --git a/tests/test_helper.py b/tests/test_helper.py
index bf1a843..e7498f1 100644
--- a/tests/test_helper.py
+++ b/tests/test_helper.py
@@ -2,7 +2,7 @@
 
 import pytest
 
-from innerspfit import helpers
+from gifit import helpers
 
 
 @pytest.mark.parametrize(
diff --git a/tests/test_join.py b/tests/test_join.py
index 6bdc338..5c53e38 100644
--- a/tests/test_join.py
+++ b/tests/test_join.py
@@ -1,7 +1,7 @@
 from typing import Iterable
 
-from innerspfit import helpers
-from innerspfit.model import SurfaceFitParams
+from gifit import helpers
+from gifit.model import SurfaceFitParams
 import pytest
 
 PARAMS1 = SurfaceFitParams(
diff --git a/tests/test_model.py b/tests/test_model.py
index eee8718..f96ee52 100644
--- a/tests/test_model.py
+++ b/tests/test_model.py
@@ -1,11 +1,18 @@
+import importlib.resources
+
 import pytest
 
-from innerspfit.model import Model
+from gifit.model import Model
+
+
+@pytest.fixture(scope='session')
+def model_file() -> str:
+    return str(importlib.resources.files('gifit').joinpath('models').joinpath('a.csv'))
 
 
 @pytest.fixture(scope='session')
-def model() -> Model:
-    return Model()
+def model(model_file) -> Model:
+    return Model(model_file)
 
 
 @pytest.mark.parametrize(