From 48cd4a9a1feb0129cdaa3da181f6b2964d5188dc Mon Sep 17 00:00:00 2001 From: Brylie Christopher Oxley Date: Sat, 27 Jun 2026 13:06:34 +0300 Subject: [PATCH 1/7] Upgrade to Python 3.14 and switch pre-commit to prek Bumps the project to Python 3.14 across devcontainer, CI, mypy, ruff, and pyrefly configs, and upgrades the full dependency tree (langchain 1.x, gradio 6.x, pydantic 2.13, etc.) to versions with 3.14 wheels. - Replace pre-commit with prek (faster, drop-in compatible) as the git hook runner; bump the ruff/pyupgrade hook revs and pin default_language_version to python3.14 so hook environments match the project interpreter. - gradio 6 dropped Chatbot(type="messages") now that the messages format is the only one; remove the obsolete kwarg. - langchain 1.x removed the langchain.schema compat shim; switch to langchain_core.documents.Document. - langchain-huggingface now gates sentence-transformers/transformers behind a "full" extra; request it explicitly (including in the mypy hook's additional_dependencies) so HuggingFaceEmbeddings keeps working and type-checks cleanly. - click 8.2+ no longer mixes stderr into CliRunner stdout by default; update CLI exception-message assertions to check result.output. - Apply ruff's py314-target modernizations (PEP 604/758 syntax, simplified Generator[] hints). Co-Authored-By: Claude Sonnet 4.6 --- .devcontainer/Dockerfile | 2 +- .devcontainer/devcontainer.json | 5 +- .github/workflows/ci.yaml | 2 +- .pre-commit-config.yaml | 10 +- .python-version | 2 +- README.md | 2 +- mise.toml | 3 + mypy.ini | 2 +- pyproject.toml | 14 +- pyrefly.toml | 2 +- pytest.ini | 1 - tapio/app.py | 3 +- tapio/config/config_manager.py | 2 +- tapio/services/llm_service.py | 2 +- tapio/services/rag_orchestrator.py | 6 +- tapio/utils/markdown_utils.py | 2 +- tapio/vectorstore/vectorizer.py | 2 +- tests/integration/test_rag_pipeline.py | 3 +- tests/parser/test_parser.py | 8 +- tests/test_cli.py | 12 +- uv.lock | 4637 ++++++++++-------------- 21 files changed, 1974 insertions(+), 2748 deletions(-) diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile index 8fa5ed3..400655b 100644 --- a/.devcontainer/Dockerfile +++ b/.devcontainer/Dockerfile @@ -1,4 +1,4 @@ -FROM mcr.microsoft.com/devcontainers/python:1-3.12-bookworm +FROM mcr.microsoft.com/devcontainers/python:3.14-bookworm RUN rm -f /etc/apt/sources.list.d/yarn.list \ && apt-get update && apt-get install -y --no-install-recommends zstd \ diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 78655e2..e469024 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -7,14 +7,15 @@ "ghcr.io/va-h/devcontainers-features/uv:1": {}, "ghcr.io/prulloac/devcontainer-features/ollama:1": {} }, - "postCreateCommand": "uv sync --dev && uv run pre-commit install", + "postCreateCommand": "uv sync --dev && uv run prek install", "customizations": { "vscode": { "extensions": [ "ms-python.python", "GitHub.copilot", "GitHub.vscode-pull-request-github", - "charliermarsh.ruff" + "charliermarsh.ruff", + "Anthropic.claude-code" ], "settings": { "python.defaultInterpreter": "${containerWorkspaceFolder}/.venv/bin/python", diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 8ae554a..2c88f11 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -14,7 +14,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.10", "3.11", "3.12"] + python-version: ["3.14"] steps: - uses: actions/checkout@v4 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 41f5977..80576e6 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,3 +1,5 @@ +default_language_version: + python: python3.14 repos: - repo: https://github.com/pre-commit/pre-commit-hooks rev: v5.0.0 @@ -11,10 +13,10 @@ repos: - id: check-toml - id: check-merge-conflict - repo: https://github.com/asottile/pyupgrade - rev: v3.19.1 + rev: v3.21.2 hooks: - id: pyupgrade - args: [--py311-plus] + args: [--py313-plus] - repo: https://github.com/asottile/add-trailing-comma rev: v3.1.0 hooks: @@ -22,7 +24,7 @@ repos: args: [--py36-plus] - repo: https://github.com/astral-sh/ruff-pre-commit # Ruff version. - rev: v0.9.8 + rev: v0.15.20 hooks: # Run the linter. - id: ruff @@ -44,7 +46,7 @@ repos: - chromadb - langchain-chroma - langchain-core - - langchain-huggingface + - langchain-huggingface[full] - langchain-text-splitters - langchain-community - langchain diff --git a/.python-version b/.python-version index e4fba21..6324d40 100644 --- a/.python-version +++ b/.python-version @@ -1 +1 @@ -3.12 +3.14 diff --git a/README.md b/README.md index 8b31159..fee24b8 100644 --- a/README.md +++ b/README.md @@ -122,4 +122,4 @@ Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/d -This project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind welcome! \ No newline at end of file +This project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind welcome! diff --git a/mise.toml b/mise.toml index a2cd308..312c599 100644 --- a/mise.toml +++ b/mise.toml @@ -1,2 +1,5 @@ [tools] gh = "latest" +ollama = "latest" +python = "3.14" +uv = "latest" diff --git a/mypy.ini b/mypy.ini index 802aa7f..6416a09 100644 --- a/mypy.ini +++ b/mypy.ini @@ -1,5 +1,5 @@ [mypy] -python_version = 3.11 +python_version = 3.14 warn_redundant_casts = True warn_unreachable = True pretty = True diff --git a/pyproject.toml b/pyproject.toml index 1b7c3b3..6486ac4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3,7 +3,7 @@ name = "tapio" version = "2.0.0" description = "An assistant for Finnish immigrants" readme = "README.md" -requires-python = ">=3.10" +requires-python = ">=3.14" license = "MIT" authors = [ {name = "Finntegrate Team", email = "info@finntegrate.org"} @@ -18,10 +18,10 @@ dependencies = [ "langchain-community>=0.3.21", "langchain>=0.3.23", "langchain-chroma>=0.2.3", - "langchain-huggingface>=0.1.2", - "gradio>=5.25.2", + "langchain-huggingface[full]>=0.1.2", + "gradio>=6.0.0", "ollama>=0.4.8", - "pydantic>=2.11.3", + "pydantic>=2.13.4", "httpx>=0.28.1", "beautifulsoup4>=4.13.4", ] @@ -35,7 +35,7 @@ python_files = "test_*.py" [tool.ruff] line-length = 120 -target-version = "py310" +target-version = "py314" [tool.ruff.lint] select = ["E", "F", "I", "UP"] @@ -49,12 +49,12 @@ line-ending = "auto" [dependency-groups] dev = [ "mypy>=1.15.0", - "pre-commit>=4.2.0", + "prek>=0.2.3", "pyrefly>=0.17.0", "pytest>=8.3.5", "pytest-asyncio>=1.0.0", "pytest-cov>=6.1.1", - "ruff>=0.11.5", + "ruff>=0.13.1", "types-lxml>=2025.3.30", "types-pyyaml>=6.0.12.20250402", ] diff --git a/pyrefly.toml b/pyrefly.toml index dbecd83..67b3419 100644 --- a/pyrefly.toml +++ b/pyrefly.toml @@ -1,4 +1,4 @@ project_includes = ["tapio/", ] project_excludes = ["**/.[!/.]*", "**/*venv/**", ".venv/**", "tests/"] search_path = ["tapio/", "tests/"] -python_version = "3.11.0" +python_version = "3.14.0" diff --git a/pytest.ini b/pytest.ini index a6f4b03..192cdc6 100644 --- a/pytest.ini +++ b/pytest.ini @@ -8,4 +8,3 @@ filterwarnings = markers = integration: Integration tests that use real components (slower, may download models) - diff --git a/tapio/app.py b/tapio/app.py index c2fd10f..d862ce4 100644 --- a/tapio/app.py +++ b/tapio/app.py @@ -89,7 +89,7 @@ def respond_stream( self, message: str, chat_history: list[dict[str, str]], - ) -> Generator[tuple[str, list[dict[str, str]], str], None, None]: + ) -> Generator[tuple[str, list[dict[str, str]], str]]: """Process user message and stream the response. Args: @@ -235,7 +235,6 @@ def _build_interface(self) -> gr.Blocks: chatbot = gr.Chatbot( label="Conversation", height=500, - type="messages", ) msg = gr.Textbox( label="Your question", diff --git a/tapio/config/config_manager.py b/tapio/config/config_manager.py index 634a984..625f96f 100644 --- a/tapio/config/config_manager.py +++ b/tapio/config/config_manager.py @@ -106,7 +106,7 @@ def get_site_descriptions(self) -> dict[str, str]: } @classmethod - def from_file(cls, config_path: str) -> "ConfigManager": + def from_file(cls, config_path: str) -> ConfigManager: """ Create a ConfigManager instance from a specific configuration file. diff --git a/tapio/services/llm_service.py b/tapio/services/llm_service.py index 1c9e971..b7b0665 100644 --- a/tapio/services/llm_service.py +++ b/tapio/services/llm_service.py @@ -131,7 +131,7 @@ def generate_response(self, prompt: str, system_prompt: str | None = None) -> st f"Please check if Ollama is running with the {self.model_name} model." ) - def generate_response_stream(self, prompt: str, system_prompt: str | None = None) -> Generator[str, None, None]: + def generate_response_stream(self, prompt: str, system_prompt: str | None = None) -> Generator[str]: """Generate a streaming response from the LLM model. Args: diff --git a/tapio/services/rag_orchestrator.py b/tapio/services/rag_orchestrator.py index a345390..5834208 100644 --- a/tapio/services/rag_orchestrator.py +++ b/tapio/services/rag_orchestrator.py @@ -103,7 +103,7 @@ def query_stream( self, query_text: str, history: list[dict[str, Any]] | None = None, - ) -> tuple[Generator[str, None, None], list[Any]]: + ) -> tuple[Generator[str], list[Any]]: """Generate a streaming response using RAG. Args: @@ -136,7 +136,7 @@ def query_stream( # Step 4: Create the streaming generator logger.info("Generating streaming response with LLM") - def stream_generator() -> Generator[str, None, None]: + def stream_generator() -> Generator[str]: llm_response_stream = self.llm_service.generate_response_stream( prompt=user_prompt, system_prompt=system_prompt, @@ -159,7 +159,7 @@ def stream_generator() -> Generator[str, None, None]: except Exception: logger.exception("Error in query_stream setup") - def error_generator() -> Generator[str, None, None]: + def error_generator() -> Generator[str]: yield "I encountered an error while processing your query. Please try again." return error_generator(), [] diff --git a/tapio/utils/markdown_utils.py b/tapio/utils/markdown_utils.py index 46bd847..450a2f8 100644 --- a/tapio/utils/markdown_utils.py +++ b/tapio/utils/markdown_utils.py @@ -78,7 +78,7 @@ def find_markdown_files(directory: str, site_filter: str | None = None) -> list[ # Check if the first part of the path is the site name if len(path_parts) > 0 and path_parts[0] == site_filter: markdown_files.append(file_path) - except (ValueError, IndexError): + except ValueError, IndexError: # Skip files that don't match the site structure pass else: diff --git a/tapio/vectorstore/vectorizer.py b/tapio/vectorstore/vectorizer.py index 665ca74..889af08 100644 --- a/tapio/vectorstore/vectorizer.py +++ b/tapio/vectorstore/vectorizer.py @@ -4,8 +4,8 @@ import os from typing import Any -from langchain.schema.document import Document # type: ignore[import-not-found] from langchain_chroma import Chroma # type: ignore[import-not-found] +from langchain_core.documents import Document from langchain_text_splitters import MarkdownTextSplitter # type: ignore[import-not-found] from tapio.utils.markdown_utils import find_markdown_files, read_markdown_file diff --git a/tests/integration/test_rag_pipeline.py b/tests/integration/test_rag_pipeline.py index 51168c4..3c886ed 100644 --- a/tests/integration/test_rag_pipeline.py +++ b/tests/integration/test_rag_pipeline.py @@ -138,7 +138,8 @@ def test_document_retrieval_similarity_search(tmp_chroma_db, mock_embeddings): metadata={"source": "doc1.md", "topic": "residence"}, ), Document( - page_content="Tourist visas allow short visits to Finland.", metadata={"source": "doc2.md", "topic": "visa"} + page_content="Tourist visas allow short visits to Finland.", + metadata={"source": "doc2.md", "topic": "visa"}, ), Document( page_content="Permanent residence permits grant long-term stay rights.", diff --git a/tests/parser/test_parser.py b/tests/parser/test_parser.py index e97e880..a0a6054 100644 --- a/tests/parser/test_parser.py +++ b/tests/parser/test_parser.py @@ -234,10 +234,14 @@ def test_parse_html_without_fallback(self): # Prepare input/output directories for no_fallback site no_fallback_input_dir = os.path.join( - self.temp_dir, self.no_fallback_site_name, self.DEFAULT_DIRS["CRAWLED_DIR"] + self.temp_dir, + self.no_fallback_site_name, + self.DEFAULT_DIRS["CRAWLED_DIR"], ) no_fallback_output_dir = os.path.join( - self.temp_dir, self.no_fallback_site_name, self.DEFAULT_DIRS["PARSED_DIR"] + self.temp_dir, + self.no_fallback_site_name, + self.DEFAULT_DIRS["PARSED_DIR"], ) os.makedirs(no_fallback_input_dir, exist_ok=True) os.makedirs(no_fallback_output_dir, exist_ok=True) diff --git a/tests/test_cli.py b/tests/test_cli.py index 85f38b1..38288a8 100644 --- a/tests/test_cli.py +++ b/tests/test_cli.py @@ -160,7 +160,7 @@ def test_crawl_command_exception(self, mock_config_manager, mock_crawler_runner, # Check expected output in stdout assert "Starting web crawler for migri" in result.stdout - assert "Error during crawling: Test error" in result.stdout + assert "Error during crawling: Test error" in result.output @patch("tapio.cli.ConfigManager") def test_crawl_command_invalid_site(self, mock_config_manager, runner): @@ -269,7 +269,7 @@ def test_parse_command_exception(self, mock_parser, mock_config_manager, runner) # Check expected output in stdout assert "Starting HTML parsing" in result.stdout - assert "Error during parsing: Test error" in result.stdout + assert "Error during parsing: Test error" in result.output # Check that list_available_sites was called mock_config_instance.list_available_sites.assert_called_once() @@ -339,7 +339,7 @@ def test_vectorize_command_exception(self, mock_vectorizer, runner): # Check expected output in stdout assert "Starting vectorization" in result.stdout - assert "Error during vectorization: Test error" in result.stdout + assert "Error during vectorization: Test error" in result.output @patch("tapio.cli.tapio_app") def test_dev_command(self, mock_tapio_app, runner): @@ -446,7 +446,7 @@ def test_list_sites_command_exception(self, mock_config_manager, runner): assert result.exit_code == 1 # Check expected output in stdout - assert "Error listing site configurations: Test error" in result.stdout + assert "Error listing site configurations: Test error" in result.output @patch("tapio.cli.ConfigManager") @patch("tapio.cli.Parser") @@ -727,7 +727,7 @@ def test_parse_command_no_site_with_exception( ): """Test handling of exceptions in parse command when parsing all sites.""" # Setup mocks for directory structure - new structure uses content/site_name/crawled/ - mock_exists.side_effect = lambda path: (path == DEFAULT_CONTENT_DIR or "migri/crawled" in path) + mock_exists.side_effect = lambda path: path == DEFAULT_CONTENT_DIR or "migri/crawled" in path mock_listdir.return_value = ["migri"] mock_isdir.side_effect = lambda path: not path.endswith(".json") @@ -757,7 +757,7 @@ def 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upload-time = "2025-09-14T22:18:19.088Z" }, ] From aba113ce267f63720248ba7efa58db86fa1e605c Mon Sep 17 00:00:00 2001 From: Brylie Christopher Oxley Date: Sat, 27 Jun 2026 13:09:14 +0300 Subject: [PATCH 2/7] Add VSCode extensions recommendations for improved development experience --- .vscode/extensions.json | 8 ++++++++ 1 file changed, 8 insertions(+) create mode 100644 .vscode/extensions.json diff --git a/.vscode/extensions.json b/.vscode/extensions.json new file mode 100644 index 0000000..08a9ec6 --- /dev/null +++ b/.vscode/extensions.json @@ -0,0 +1,8 @@ +{ + "recommendations": [ + "anthropic.claude-code", + "ms-vscode-remote.remote-containers", + "github.vscode-pull-request-github", + "ms-python.python" + ] +} From 1798be9e154ed121d0998178e4ee3756acd6c92d Mon Sep 17 00:00:00 2001 From: Brylie Christopher Oxley Date: Sat, 27 Jun 2026 14:59:00 +0300 Subject: [PATCH 3/7] Enable a comprehensive ruff rule set and fix all resulting findings Expands ruff's lint selection from a minimal E/F/I/UP set to ~50 rule categories (bugbear, bandit, pathlib, pydocstyle, simplify, pylint, tryceratops, type-checking, and more), with every ignore -- global and per-file -- carrying an inline comment explaining why. Highlights beyond mechanical cleanup: - Logging: all f-string log calls converted to lazy %-formatting; bare root-logger calls replaced with named loggers; .error() -> .exception() in except blocks so tracebacks are actually captured. - Migrated ~176 os.path call sites to pathlib.Path across the crawler, parser, vectorizer, and config modules; updated tests to mock Path methods instead of os.* accordingly. - Reverted an initial attempt to move imports behind TYPE_CHECKING (TC001-003): it caused a real NameError because gradio's event-handler wiring eagerly resolves type hints, and this project has no `from __future__ import annotations` to make deferred imports safe. Documented and ignored instead. - Removed ChromaStore's reliance on langchain's private `_collection` attribute, rewriting query_with_embedding/get_document against the public Chroma API. - Implemented multi-turn chat history support in LLMService/ RAGOrchestrator: the `history` parameter was flagged as unused (ARG002) but was actually wired in from the Gradio app and simply never consumed. Threads it into the ollama messages list (capped via MAX_HISTORY_MESSAGES) and fixes a double-counting bug where respond_stream included the just-appended current message in history. - Reduced real complexity (C901/PLR0911/PLR0915) in check_model_availability, BaseCrawler._crawl_url, and the `parse` CLI command via extraction, rather than raising thresholds. Co-Authored-By: Claude Sonnet 4.6 --- pyproject.toml | 97 ++++++- tapio/app.py | 16 +- tapio/cli.py | 245 +++++++++-------- tapio/config/config_manager.py | 44 ++- tapio/config/config_models.py | 3 +- tapio/crawler/__init__.py | 3 +- tapio/crawler/crawler.py | 253 ++++++++++-------- tapio/crawler/runner.py | 27 +- tapio/factories.py | 2 +- tapio/models/__init__.py | 3 +- tapio/models/document.py | 15 +- tapio/parser/__init__.py | 3 +- tapio/parser/parser.py | 213 +++++++-------- tapio/prompts/__init__.py | 2 +- tapio/prompts/prompt_loader.py | 16 +- tapio/services/__init__.py | 4 +- tapio/services/document_retrieval_service.py | 17 +- tapio/services/llm_service.py | 164 +++++++----- tapio/services/rag_orchestrator.py | 6 +- tapio/utils/__init__.py | 7 +- tapio/utils/embedding_utils.py | 26 +- tapio/utils/markdown_utils.py | 62 ++--- tapio/utils/text_utils.py | 82 +++--- tapio/vectorstore/chroma_store.py | 89 +++--- tapio/vectorstore/vectorizer.py | 43 +-- tests/config/test_config_manager.py | 47 ++-- tests/crawler/test_crawler.py | 35 +-- tests/parser/test_parser.py | 3 +- tests/parser/test_relative_links.py | 8 - tests/prompts/test_prompt_loader.py | 12 +- .../test_document_retrieval_service.py | 3 +- tests/services/test_llm_service.py | 47 +++- tests/test_cli.py | 195 +++++++------- tests/test_gradio_app.py | 16 ++ tests/utils/test_markdown_utils.py | 8 +- tests/utils/test_text_utils.py | 2 +- tests/vectorstore/test_chroma_store.py | 34 +-- tests/vectorstore/test_vectorizer.py | 7 +- uv.lock | 2 +- 39 files changed, 991 insertions(+), 870 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 6486ac4..85e170c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -38,8 +38,99 @@ line-length = 120 target-version = "py314" [tool.ruff.lint] -select = ["E", "F", "I", "UP"] -ignore = [] +select = [ + "A", # flake8-builtins + "ANN", # flake8-annotations + "ARG", # flake8-unused-arguments + "ASYNC", # flake8-async + "B", # flake8-bugbear + "BLE", # flake8-blind-except + "C4", # flake8-comprehensions + "C90", # mccabe complexity + "D", # pydocstyle + "DTZ", # flake8-datetimez + "E", # pycodestyle errors + "EM", # flake8-errmsg + "EXE", # flake8-executable + "F", # pyflakes + "FA", # flake8-future-annotations + "FBT", # flake8-boolean-trap + "FIX", # flake8-fixme + "FLY", # flynt + "FURB", # refurb + "G", # flake8-logging-format + "I", # isort + "ICN", # flake8-import-conventions + "INP", # flake8-no-pep420 + "ISC", # flake8-implicit-str-concat + "LOG", # flake8-logging + "N", # pep8-naming + "PERF", # perflint + "PGH", # pygrep-hooks + "PIE", # flake8-pie + "PL", # pylint + "PT", # flake8-pytest-style + "PTH", # flake8-use-pathlib + "RET", # flake8-return + "RSE", # flake8-raise + "RUF", # ruff-specific rules + "S", # flake8-bandit + "SIM", # flake8-simplify + "SLF", # flake8-self + "SLOT", # flake8-slots + "T10", # flake8-debugger + "T20", # flake8-print + "TC", # flake8-type-checking + "TD", # flake8-todos + "TID", # flake8-tidy-imports + "TRY", # tryceratops + "UP", # pyupgrade + "W", # pycodestyle warnings + "YTT", # flake8-2020 +] +ignore = [ + "ANN401", # Any is used intentionally for flexible metadata dicts + "BLE001", # broad except-and-log-and-continue is intentional throughout the crawl/parse/vectorize pipelines + "COM812", # trailing-comma rules conflict with the ruff formatter + "FBT001", # bool positional params are idiomatic for typer.Option-based CLI flags + "FBT002", # bool default params are idiomatic for typer.Option-based CLI flags + "ISC001", # implicit-str-concat conflicts with the ruff formatter + "TC001", # moving first-party imports behind TYPE_CHECKING breaks at runtime: no + # `from __future__ import annotations` here, and Python 3.14's deferred + # annotations (PEP 649) only postpone evaluation -- anything that actually + # resolves them (e.g. gradio's event-handler introspection, already hit a + # NameError on this) still needs the name to exist at call time + "TC002", # same risk as TC001, for third-party imports + "TC003", # same risk as TC001, for standard-library imports + "TRY301", # raise typer.Exit(...) inside a try block is a deliberate CLI control-flow + # signal for validation failures, not an error needing a dedicated wrapper + # function -- tryceratops' heuristic doesn't fit this idiom +] + +[tool.ruff.lint.per-file-ignores] +"tests/*" = [ + "ANN", # tests are excluded from mypy and don't need type annotations + "ARG001", # unused fixture/mock arguments are normal in tests + "ARG002", # unused mock-override arguments are normal in tests + "D", # docstrings aren't required on test functions + "INP001", # tests intentionally use implicit namespace packages + "PLC0415", # local imports for mocking/patching timing are idiomatic in tests + "PLR0913", # test functions naturally take many fixture arguments + "PLR2004", # magic values in test assertions/fixtures are fine + "PT009", # some test classes intentionally use unittest.TestCase-style assertions + "PTH", # os.path-based temp file/dir handling in test fixtures is fine + "S101", # assert is the standard pytest idiom + "SLF001", # tests intentionally exercise private members +] +"tapio/cli.py" = [ + "FBT003", # typer.Option(False, ...) passes the default positionally by convention +] + +[tool.ruff.lint.pydocstyle] +convention = "google" + +[tool.ruff.lint.pylint] +max-args = 6 [tool.ruff.format] quote-style = "double" @@ -50,7 +141,7 @@ line-ending = "auto" dev = [ "mypy>=1.15.0", "prek>=0.2.3", - "pyrefly>=0.17.0", + "pyrefly>=1.1.1", "pytest>=8.3.5", "pytest-asyncio>=1.0.0", "pytest-cov>=6.1.1", diff --git a/tapio/app.py b/tapio/app.py index d862ce4..ca7c555 100644 --- a/tapio/app.py +++ b/tapio/app.py @@ -77,13 +77,14 @@ def generate_rag_response( retrieved_docs, ) - return response, formatted_docs - except Exception as e: - logger.error(f"Error generating response: {e}") + except Exception: + logger.exception("Error generating response") return ( "I encountered an error while processing your query. Please try again.", "Error retrieving documents.", ) + else: + return response, formatted_docs def respond_stream( self, @@ -112,9 +113,10 @@ def respond_stream( try: # Get streaming response and retrieved docs from the RAG orchestrator + # Exclude the just-appended current message; history should hold prior turns only response_stream, retrieved_docs = self.rag_orchestrator.query_stream( query_text=message, - history=chat_history, + history=chat_history[:-1], ) # Start building the assistant response and immediately start streaming @@ -134,7 +136,7 @@ def respond_stream( # Stream the response - start consuming immediately for chunk in response_stream: - logger.debug(f"App received chunk: '{chunk}'") + logger.debug("App received chunk: '%s'", chunk) # Replace the ellipsis with actual content on first meaningful chunk if first_chunk and chunk.strip(): # Only replace if chunk has content logger.info( @@ -174,8 +176,8 @@ def respond_stream( yield "", chat_history, formatted_docs - except Exception as e: - logger.error(f"Error in streaming response: {e}") + except Exception: + logger.exception("Error in streaming response") error_message = "I encountered an error while processing your query. Please try again." chat_history.append( {"role": "assistant", "content": error_message}, diff --git a/tapio/cli.py b/tapio/cli.py index 5a8795e..cac2bd5 100644 --- a/tapio/cli.py +++ b/tapio/cli.py @@ -1,5 +1,7 @@ +"""Command-line interface for the Tapio Assistant pipeline.""" + import logging -import os +from pathlib import Path import typer from langchain_chroma import Chroma # type: ignore[import-not-found] @@ -43,18 +45,18 @@ def find_sites_with_crawled_content(content_dir: str, crawled_subdir: str) -> li :return: List of site names that have crawled HTML content """ crawled_sites: list[str] = [] - if not os.path.exists(content_dir): + content_path = Path(content_dir) + if not content_path.exists(): return crawled_sites - for item in os.listdir(content_dir): - item_path = os.path.join(content_dir, item) - if os.path.isdir(item_path): - crawled_path = os.path.join(item_path, crawled_subdir) - if os.path.exists(crawled_path) and os.path.isdir(crawled_path): + for item_path in content_path.iterdir(): + if item_path.is_dir(): + crawled_path = item_path / crawled_subdir + if crawled_path.is_dir(): # Check if the crawled directory contains any HTML files - has_html = any(f.endswith(".html") for root, _, files in os.walk(crawled_path) for f in files) + has_html = any(crawled_path.rglob("*.html")) if has_html: - crawled_sites.append(item) + crawled_sites.append(item_path.name) return crawled_sites @@ -84,8 +86,7 @@ def crawl( help="Enable verbose output", ), ) -> None: - """ - Crawl a website to a configurable depth and save raw HTML content. + """Crawl a website to a configurable depth and save raw HTML content. This command takes a site identifier and uses the corresponding configuration from the site_configs.yaml file to determine the base URL for crawling. @@ -112,8 +113,8 @@ def crawl( # Get the site configuration site_config = config_manager.get_site_config(site) except ValueError as e: - typer.echo(f"❌ Error loading site configuration: {str(e)}") - raise typer.Exit(code=1) + typer.echo(f"❌ Error loading site configuration: {e!s}") + raise typer.Exit(code=1) from None # Get the base URL from the site configuration url = site_config.base_url @@ -126,7 +127,7 @@ def crawl( site_config.crawler_config.max_depth = depth # Construct the actual output directory path - crawled_dir = os.path.join(DEFAULT_CONTENT_DIR, site, DEFAULT_DIRS["CRAWLED_DIR"]) + crawled_dir = str(Path(DEFAULT_CONTENT_DIR) / site / DEFAULT_DIRS["CRAWLED_DIR"]) typer.echo(f"🕸️ Starting web crawler for {site} ({url}) with depth {site_config.crawler_config.max_depth}") typer.echo(f"💾 Saving HTML content to: {crawled_dir}") @@ -153,9 +154,95 @@ def crawl( typer.echo("✅ Partial results have been saved") typer.echo(f"💾 Crawled content saved to {crawled_dir}") except Exception as e: - typer.echo(f"❌ Error during crawling: {str(e)}", err=True) + typer.echo(f"❌ Error during crawling: {e!s}", err=True) + raise typer.Exit(code=1) from None + + +def _parse_single_site(config_manager: ConfigManager, site: str, available_sites: list[str]) -> None: + """Parse a single, named site. + + Args: + config_manager: Site configuration manager + site: Name of the site to parse + available_sites: Names of sites with known configurations + """ + if site not in available_sites: + typer.echo(f"❌ Unsupported site: {site}") + typer.echo(f"Available sites: {', '.join(available_sites)}") + raise typer.Exit(code=1) + + typer.echo(f"🔧 Using configuration for site: {site}") + + site_config = config_manager.get_site_config(site) + input_dir = str(Path(DEFAULT_CONTENT_DIR) / site / DEFAULT_DIRS["CRAWLED_DIR"]) + output_dir = str(Path(DEFAULT_CONTENT_DIR) / site / DEFAULT_DIRS["PARSED_DIR"]) + + parser = Parser( + site_name=site, + site_config=site_config, + input_dir=input_dir, + output_dir=output_dir, + ) + results = parser.parse_all() + + typer.echo(f"✅ Parsing completed! Processed {len(results)} files.") + parsed_dir = str(Path(DEFAULT_CONTENT_DIR) / site / DEFAULT_DIRS["PARSED_DIR"]) + typer.echo(f"📝 Content saved as Markdown files in {parsed_dir}") + typer.echo(f"📝 Index created at {parsed_dir}/index.md") + + +def _parse_all_crawled_sites(config_manager: ConfigManager, available_sites: list[str]) -> None: + """Parse every site that has crawled content and a matching configuration. + + Args: + config_manager: Site configuration manager + available_sites: Names of sites with known configurations + """ + typer.echo("🔧 No site specified, parsing all available sites with crawled content") + + content_dir = DEFAULT_CONTENT_DIR + if not Path(content_dir).exists(): + typer.echo(f"❌ Content directory not found: {content_dir}") + raise typer.Exit(code=1) + + crawled_sites = find_sites_with_crawled_content(content_dir, DEFAULT_DIRS["CRAWLED_DIR"]) + if not crawled_sites: + typer.echo("❌ No crawled content found to parse") raise typer.Exit(code=1) + typer.echo(f"📂 Found crawled content for sites: {', '.join(crawled_sites)}") + + sites_to_parse = [site_name for site_name in available_sites if site_name in crawled_sites] + if not sites_to_parse: + typer.echo("❌ No site configurations found matching crawled content") + typer.echo(f"Available sites: {', '.join(available_sites)}") + typer.echo(f"Crawled sites: {', '.join(crawled_sites)}") + raise typer.Exit(code=1) + + typer.echo(f"🎯 Parsing sites: {', '.join(sites_to_parse)}") + + total_results = [] + for site_name in sites_to_parse: + typer.echo(f"🔧 Parsing site: {site_name}") + site_config = config_manager.get_site_config(site_name) + input_dir = str(Path(DEFAULT_CONTENT_DIR) / site_name / DEFAULT_DIRS["CRAWLED_DIR"]) + output_dir = str(Path(DEFAULT_CONTENT_DIR) / site_name / DEFAULT_DIRS["PARSED_DIR"]) + + parser = Parser( + site_name=site_name, + site_config=site_config, + input_dir=input_dir, + output_dir=output_dir, + ) + + site_results = parser.parse_all() + total_results.extend(site_results) + typer.echo(f" ✅ {site_name}: Processed {len(site_results)} files") + + typer.echo(f"✅ All parsing completed! Processed {len(total_results)} files total.") + typer.echo(f"📝 Content saved as Markdown files in {DEFAULT_CONTENT_DIR}") + typer.echo(f"📊 Parsed {len(sites_to_parse)} sites: {', '.join(sites_to_parse)}") + @app.command() def parse( @@ -176,8 +263,7 @@ def parse( help="Enable verbose output", ), ) -> None: - """ - Parse HTML files previously crawled and convert to structured Markdown. + """Parse HTML files previously crawled and convert to structured Markdown. This command reads HTML files from the specified input directory, extracts meaningful content based on site-specific configurations, and saves it as Markdown files with YAML frontmatter. @@ -198,104 +284,17 @@ def parse( typer.echo(f"📄 Saving parsed content to: {DEFAULT_DIRS['PARSED_DIR']}") try: - # Use ConfigManager for site configuration management config_manager = ConfigManager(config_path) available_sites = config_manager.list_available_sites() if site is not None: - # Parse a specific site - if site in available_sites: - typer.echo(f"🔧 Using configuration for site: {site}") - - # Get site config from config manager - site_config = config_manager.get_site_config(site) - - # Determine input and output directories - input_dir = os.path.join(DEFAULT_CONTENT_DIR, site, DEFAULT_DIRS["CRAWLED_DIR"]) - output_dir = os.path.join(DEFAULT_CONTENT_DIR, site, DEFAULT_DIRS["PARSED_DIR"]) - - # Create parser with dependency injection - parser = Parser( - site_name=site, - site_config=site_config, - input_dir=input_dir, - output_dir=output_dir, - ) - results = parser.parse_all() - - # Output information - typer.echo(f"✅ Parsing completed! Processed {len(results)} files.") - parsed_dir = os.path.join(DEFAULT_CONTENT_DIR, site, DEFAULT_DIRS["PARSED_DIR"]) - typer.echo(f"📝 Content saved as Markdown files in {parsed_dir}") - typer.echo(f"📝 Index created at {parsed_dir}/index.md") - else: - typer.echo(f"❌ Unsupported site: {site}") - typer.echo(f"Available sites: {', '.join(available_sites)}") - raise typer.Exit(code=1) + _parse_single_site(config_manager, site, available_sites) else: - # Parse all sites that have crawled content - typer.echo("🔧 No site specified, parsing all available sites with crawled content") - - # Find which sites have crawled content by checking the content directory structure - content_dir = DEFAULT_CONTENT_DIR - if not os.path.exists(content_dir): - typer.echo(f"❌ Content directory not found: {content_dir}") - raise typer.Exit(code=1) - - # Get site directories that contain crawled content - crawled_sites = find_sites_with_crawled_content(content_dir, DEFAULT_DIRS["CRAWLED_DIR"]) - - if not crawled_sites: - typer.echo("❌ No crawled content found to parse") - raise typer.Exit(code=1) - - typer.echo(f"📂 Found crawled content for sites: {', '.join(crawled_sites)}") - - # Match crawled sites to available site configurations - sites_to_parse: list[str] = [] - for site_name in available_sites: - if site_name in crawled_sites: - sites_to_parse.append(site_name) - - if not sites_to_parse: - typer.echo("❌ No site configurations found matching crawled content") - typer.echo(f"Available sites: {', '.join(available_sites)}") - typer.echo(f"Crawled sites: {', '.join(crawled_sites)}") - raise typer.Exit(code=1) - - typer.echo(f"🎯 Parsing sites: {', '.join(sites_to_parse)}") - - # Parse each site - total_results = [] - for site_name in sites_to_parse: - typer.echo(f"🔧 Parsing site: {site_name}") - # Get site configuration - site_config = config_manager.get_site_config(site_name) - - # Build directory paths - input_dir = os.path.join(DEFAULT_CONTENT_DIR, site_name, DEFAULT_DIRS["CRAWLED_DIR"]) - output_dir = os.path.join(DEFAULT_CONTENT_DIR, site_name, DEFAULT_DIRS["PARSED_DIR"]) - - # Create parser with injected dependencies - parser = Parser( - site_name=site_name, - site_config=site_config, - input_dir=input_dir, - output_dir=output_dir, - ) - - site_results = parser.parse_all() - total_results.extend(site_results) - typer.echo(f" ✅ {site_name}: Processed {len(site_results)} files") - - # Output summary information - typer.echo(f"✅ All parsing completed! Processed {len(total_results)} files total.") - typer.echo(f"📝 Content saved as Markdown files in {DEFAULT_CONTENT_DIR}") - typer.echo(f"📊 Parsed {len(sites_to_parse)} sites: {', '.join(sites_to_parse)}") + _parse_all_crawled_sites(config_manager, available_sites) except Exception as e: - typer.echo(f"❌ Error during parsing: {str(e)}", err=True) - raise typer.Exit(code=1) + typer.echo(f"❌ Error during parsing: {e!s}", err=True) + raise typer.Exit(code=1) from None @app.command() @@ -323,8 +322,7 @@ def vectorize( help="Enable verbose output", ), ) -> None: - """ - Vectorize parsed Markdown files and store in a vector database (ChromaDB). + """Vectorize parsed Markdown files and store in a vector database (ChromaDB). This command reads parsed Markdown files with frontmatter, generates embeddings, and stores them in ChromaDB with associated metadata from the original source. @@ -343,8 +341,8 @@ def vectorize( # Determine input directory based on site parameter if site is not None: # Process a specific site - input_dir = os.path.join(DEFAULT_CONTENT_DIR, site, DEFAULT_DIRS["PARSED_DIR"]) - if not os.path.exists(input_dir): + input_dir = str(Path(DEFAULT_CONTENT_DIR) / site / DEFAULT_DIRS["PARSED_DIR"]) + if not Path(input_dir).exists(): typer.echo(f"❌ No parsed content found for site: {site}") typer.echo(f"Expected directory: {input_dir}") raise typer.Exit(code=1) @@ -391,8 +389,8 @@ def vectorize( typer.echo(f"🔍 Vector database is ready for similarity search in {db_dir}") except Exception as e: - typer.echo(f"❌ Error during vectorization: {str(e)}", err=True) - raise typer.Exit(code=1) + typer.echo(f"❌ Error during vectorization: {e!s}", err=True) + raise typer.Exit(code=1) from None @app.command() @@ -472,8 +470,8 @@ def tapio_app( ) -> None: """Launch the Tapio web interface for RAG-powered chatbot.""" try: - # Import the main function from the gradio_app module - from tapio.app import main as launch_app + # Deferred import: avoid loading gradio/torch unless this command actually runs + from tapio.app import main as launch_app # noqa: PLC0415 collection_name = DEFAULT_CHROMA_COLLECTION db_dir = DEFAULT_DIRS["CHROMA_DIR"] @@ -505,12 +503,12 @@ def tapio_app( ) except ImportError as e: - typer.echo(f"❌ Error importing Gradio: {str(e)}", err=True) + typer.echo(f"❌ Error importing Gradio: {e!s}", err=True) typer.echo("Make sure Gradio is installed with 'uv add gradio'") - raise typer.Exit(code=1) + raise typer.Exit(code=1) from None except Exception as e: - typer.echo(f"❌ Error launching Gradio app: {str(e)}", err=True) - raise typer.Exit(code=1) + typer.echo(f"❌ Error launching Gradio app: {e!s}", err=True) + raise typer.Exit(code=1) from None @app.command() @@ -539,8 +537,7 @@ def list_sites( help="Show detailed information about each site configuration", ), ) -> None: - """ - List available site configurations for the parser. + """List available site configurations for the parser. This command lists all the available sites that can be used with the parse command. Use the --verbose flag to see detailed information about each site's configuration. @@ -580,8 +577,8 @@ def list_sites( typer.echo(f" $ python -m tapio.cli parse {available_sites[0]}") except Exception as e: - typer.echo(f"❌ Error listing site configurations: {str(e)}", err=True) - raise typer.Exit(code=1) + typer.echo(f"❌ Error listing site configurations: {e!s}", err=True) + raise typer.Exit(code=1) from None def run_tapio_app() -> None: diff --git a/tapio/config/config_manager.py b/tapio/config/config_manager.py index 625f96f..88f90aa 100644 --- a/tapio/config/config_manager.py +++ b/tapio/config/config_manager.py @@ -5,7 +5,7 @@ """ import logging -import os +from pathlib import Path import yaml @@ -13,16 +13,14 @@ class ConfigManager: - """ - Manages configuration for the Tapio application. + """Manages configuration for the Tapio application. Loads site-specific configurations from YAML files and provides an interface to access them. """ - def __init__(self, config_path: str | None = None): - """ - Initialize the configuration manager. + def __init__(self, config_path: str | None = None) -> None: + """Initialize the configuration manager. Args: config_path: Optional path to a custom configuration file. @@ -32,8 +30,7 @@ def __init__(self, config_path: str | None = None): self._config_registry = self._load_config_registry(config_path) def _load_config_registry(self, config_path: str | None = None) -> ParserConfigRegistry: - """ - Load site configuration registry from YAML. + """Load site configuration registry from YAML. Args: config_path: Optional path to a custom configuration file. @@ -49,26 +46,25 @@ def _load_config_registry(self, config_path: str | None = None) -> ParserConfigR """ # Default config path is in the same directory as this file if not config_path: - config_dir = os.path.dirname(os.path.abspath(__file__)) - config_path = os.path.join(config_dir, "site_configs.yaml") + config_dir = Path(__file__).resolve().parent + config_path = str(config_dir / "site_configs.yaml") try: - with open(config_path, encoding="utf-8") as file: + with Path(config_path).open(encoding="utf-8") as file: config_data = yaml.safe_load(file) return ParserConfigRegistry(**config_data) except FileNotFoundError: - self.logger.error(f"Configuration file not found: {config_path}") + self.logger.exception("Configuration file not found: %s", config_path) raise - except yaml.YAMLError as e: - self.logger.error(f"Invalid YAML in configuration file: {e}") + except yaml.YAMLError: + self.logger.exception("Invalid YAML in configuration file") raise - except ValueError as e: - self.logger.error(f"Invalid configuration: {e}") + except ValueError: + self.logger.exception("Invalid configuration") raise def get_site_config(self, site: str) -> SiteConfig: - """ - Get configuration for a specific site. + """Get configuration for a specific site. Args: site: Site identifier to get configuration for @@ -80,13 +76,13 @@ def get_site_config(self, site: str) -> SiteConfig: ValueError: If the site doesn't exist in the configuration """ if site not in self._config_registry.sites: - raise ValueError(f"Site '{site}' not found in configuration") + msg = f"Site '{site}' not found in configuration" + raise ValueError(msg) return self._config_registry.sites[site] def list_available_sites(self) -> list[str]: - """ - List all available site configurations. + """List all available site configurations. Returns: List of site identifiers @@ -94,8 +90,7 @@ def list_available_sites(self) -> list[str]: return list(self._config_registry.sites.keys()) def get_site_descriptions(self) -> dict[str, str]: - """ - Get descriptions for all available sites. + """Get descriptions for all available sites. Returns: Dictionary mapping site identifiers to their descriptions @@ -107,8 +102,7 @@ def get_site_descriptions(self) -> dict[str, str]: @classmethod def from_file(cls, config_path: str) -> ConfigManager: - """ - Create a ConfigManager instance from a specific configuration file. + """Create a ConfigManager instance from a specific configuration file. Args: config_path: Path to the configuration file diff --git a/tapio/config/config_models.py b/tapio/config/config_models.py index 41ff39c..10c496f 100644 --- a/tapio/config/config_models.py +++ b/tapio/config/config_models.py @@ -107,7 +107,8 @@ def base_dir(self) -> str: # Use hostname to strip any port, and ensure a non-empty result host = parsed.hostname if not host: - raise ValueError(f"Invalid base_url: {url_str!r}") + msg = f"Invalid base_url: {url_str!r}" + raise ValueError(msg) return host def get_content_selector(self, tree: Any) -> Any | None: diff --git a/tapio/crawler/__init__.py b/tapio/crawler/__init__.py index ddb8b94..17826e6 100644 --- a/tapio/crawler/__init__.py +++ b/tapio/crawler/__init__.py @@ -1,5 +1,4 @@ -""" -Crawler module for migri-assistant. +"""Crawler module for migri-assistant. This module contains the base crawler class and runner for crawling websites and saving HTML content. The crawler focuses solely on retrieving and saving diff --git a/tapio/crawler/crawler.py b/tapio/crawler/crawler.py index bcb23e6..8189761 100644 --- a/tapio/crawler/crawler.py +++ b/tapio/crawler/crawler.py @@ -1,8 +1,11 @@ +"""Async web crawler for fetching and saving site content.""" + import asyncio import json import logging import os -from datetime import datetime +from datetime import UTC, datetime +from pathlib import Path from typing import TypedDict from urllib.parse import urljoin, urlparse @@ -12,6 +15,8 @@ from tapio.config.config_models import SiteConfig from tapio.config.settings import DEFAULT_CONTENT_DIR, DEFAULT_CRAWLER_TIMEOUT, DEFAULT_DIRS +logger = logging.getLogger(__name__) + class UrlMappingData(TypedDict): """Type definition for URL mapping data.""" @@ -32,8 +37,7 @@ class CrawlResult(TypedDict): class BaseCrawler: - """ - Base crawler implementation for web scraping using httpx and BeautifulSoup. + """Base crawler implementation for web scraping using httpx and BeautifulSoup. This crawler is responsible for fetching web pages, storing their content, and following links up to a specified depth using async/await patterns. @@ -44,8 +48,7 @@ def __init__( site_name: str, site_config: SiteConfig, ) -> None: - """ - Initialize the crawler with site configuration. + """Initialize the crawler with site configuration. Args: site_name: Name/identifier of the site being crawled. @@ -71,8 +74,8 @@ def __init__( self.timeout = DEFAULT_CRAWLER_TIMEOUT # Create output directory using centralized settings - self.output_dir = os.path.join(DEFAULT_CONTENT_DIR, self.site_name, DEFAULT_DIRS["CRAWLED_DIR"]) - os.makedirs(self.output_dir, exist_ok=True) + self.output_dir = str(Path(DEFAULT_CONTENT_DIR) / self.site_name / DEFAULT_DIRS["CRAWLED_DIR"]) + Path(self.output_dir).mkdir(parents=True, exist_ok=True) # Track visited URLs to avoid duplicates self.visited_urls: set[str] = set() @@ -81,26 +84,28 @@ def __init__( self.url_mappings: dict[str, UrlMappingData] = {} # Path for the URL mapping file - self.mapping_file = os.path.join(self.output_dir, "url_mappings.json") + self.mapping_file = str(Path(self.output_dir) / "url_mappings.json") # Semaphore will be created in async context self._semaphore: asyncio.Semaphore | None = None # Load existing mappings if they exist - if os.path.exists(self.mapping_file): + if Path(self.mapping_file).exists(): try: - with open(self.mapping_file, encoding="utf-8") as f: + with Path(self.mapping_file).open(encoding="utf-8") as f: self.url_mappings = json.load(f) - logging.info(f"Loaded {len(self.url_mappings)} existing URL mappings") - except Exception as e: - logging.error(f"Error loading URL mappings: {str(e)}") - - logging.info( - f"Starting crawler for site '{site_name}' with max depth {self.max_depth}", + logger.info("Loaded %d existing URL mappings", len(self.url_mappings)) + except Exception: + logger.exception("Error loading URL mappings") + + logger.info( + "Starting crawler for site '%s' with max depth %s", + site_name, + self.max_depth, ) - logging.info(f"Base URL: {base_url_str}") - logging.info(f"Allowed domains: {self.allowed_domains}") - logging.info(f"Output directory: {self.output_dir}") + logger.info("Base URL: %s", base_url_str) + logger.info("Allowed domains: %s", self.allowed_domains) + logger.info("Output directory: %s", self.output_dir) @property def semaphore(self) -> asyncio.Semaphore: @@ -110,8 +115,7 @@ def semaphore(self) -> asyncio.Semaphore: return self._semaphore async def crawl(self) -> list[CrawlResult]: - """ - Start the crawling process and return the results. + """Start the crawling process and return the results. Returns: List of CrawlResult dictionaries containing page data. @@ -130,10 +134,80 @@ async def crawl(self) -> list[CrawlResult]: # Save final URL mappings self._save_url_mappings() - logging.info(f"Crawling completed. Processed {len(results)} pages.") + logger.info("Crawling completed. Processed %d pages.", len(results)) return results + async def _fetch_and_process( + self, + client: httpx.AsyncClient, + url: str, + current_depth: int, + results: list[CrawlResult], + ) -> list[str]: + """Fetch a URL, save its content, and report which child links to follow next. + + Args: + client: httpx async client for making requests. + url: URL to fetch. + current_depth: Current crawling depth. + results: List to append the crawl result to. + + Returns: + Links discovered on the page that should be crawled next. Empty on any + handled fetch/parse error. + """ + try: + # Make HTTP request + response = await client.get(url) + response.raise_for_status() + + # Check content type + content_type = response.headers.get("content-type", "").lower() + if "text/html" not in content_type: + logger.info("Skipping non-HTML content type '%s' at %s", content_type, url) + return [] + + # Parse HTML content + html_content = response.text + soup = BeautifulSoup(html_content, "lxml") + + # Save the HTML content and store URL mapping + file_path = self._save_html_content(url, html_content) + rel_path = os.path.relpath(file_path, self.output_dir) # noqa: ASYNC240 (pure string computation, no I/O) + + self.url_mappings[rel_path] = UrlMappingData( + url=url, + timestamp=datetime.now(UTC).isoformat(), + content_type=content_type, + ) + + # Create crawl result + crawl_result: CrawlResult = { + "url": url, + "html": html_content, + "depth": current_depth, + "crawl_timestamp": datetime.now(UTC).isoformat(), + "content_type": content_type, + } + results.append(crawl_result) + + # Save URL mappings periodically + self._save_url_mappings() + + # Extract links for following if we haven't reached max depth + if current_depth < self.max_depth: + links = self._extract_links(soup, url) + return [link for link in links if link not in self.visited_urls] + except httpx.HTTPStatusError as e: + logger.warning("HTTP error for %s: %s", url, e.response.status_code) + except httpx.RequestError as e: + logger.warning("Request error for %s: %s", url, e) + except Exception: + logger.exception("Error processing %s", url) + + return [] + async def _crawl_url( self, client: httpx.AsyncClient, @@ -141,8 +215,7 @@ async def _crawl_url( current_depth: int, results: list[CrawlResult], ) -> None: - """ - Crawl a single URL and recursively crawl linked pages. + """Crawl a single URL and recursively crawl linked pages. Args: client: httpx async client for making requests. @@ -160,73 +233,21 @@ async def _crawl_url( # Check domain restrictions if not self._is_allowed_domain(url): - logging.debug(f"Skipping URL outside allowed domains: {url}") + logger.debug("Skipping URL outside allowed domains: %s", url) return # Use semaphore to limit concurrent requests async with self.semaphore: - try: - logging.info(f"Processing {url} at depth {current_depth}/{self.max_depth}") - - # Add delay between requests to avoid rate limiting - if self.delay_between_requests > 0: - await asyncio.sleep(self.delay_between_requests) - - # Mark URL as visited - self.visited_urls.add(url) - - # Make HTTP request - response = await client.get(url) - response.raise_for_status() - - # Check content type - content_type = response.headers.get("content-type", "").lower() - if "text/html" not in content_type: - logging.info(f"Skipping non-HTML content type '{content_type}' at {url}") - return - - # Parse HTML content - html_content = response.text - soup = BeautifulSoup(html_content, "lxml") - - # Save the HTML content and store URL mapping - file_path = self._save_html_content(url, html_content) - rel_path = os.path.relpath(file_path, self.output_dir) - - self.url_mappings[rel_path] = UrlMappingData( - url=url, - timestamp=datetime.now().isoformat(), - content_type=content_type, - ) - - # Create crawl result - crawl_result: CrawlResult = { - "url": url, - "html": html_content, - "depth": current_depth, - "crawl_timestamp": datetime.now().isoformat(), - "content_type": content_type, - } - results.append(crawl_result) - - # Save URL mappings periodically - self._save_url_mappings() - - # Extract links for following if we haven't reached max depth - links_to_follow = [] - if current_depth < self.max_depth: - links = self._extract_links(soup, url) - links_to_follow = [link for link in links if link not in self.visited_urls] - - except httpx.HTTPStatusError as e: - logging.warning(f"HTTP error for {url}: {e.response.status_code}") - return - except httpx.RequestError as e: - logging.warning(f"Request error for {url}: {str(e)}") - return - except Exception as e: - logging.error(f"Error processing {url}: {str(e)}") - return + logger.info("Processing %s at depth %s/%s", url, current_depth, self.max_depth) + + # Add delay between requests to avoid rate limiting + if self.delay_between_requests > 0: + await asyncio.sleep(self.delay_between_requests) + + # Mark URL as visited + self.visited_urls.add(url) + + links_to_follow = await self._fetch_and_process(client, url, current_depth, results) # Process child links OUTSIDE the semaphore context to avoid deadlock if links_to_follow: @@ -235,8 +256,7 @@ async def _crawl_url( await asyncio.gather(*link_tasks, return_exceptions=True) def _is_allowed_domain(self, url: str) -> bool: - """ - Check if a URL belongs to an allowed domain. + """Check if a URL belongs to an allowed domain. Args: url: URL to check. @@ -251,8 +271,7 @@ def _is_allowed_domain(self, url: str) -> bool: return parsed_url.netloc in self.allowed_domains def _save_html_content(self, url: str, html_content: str) -> str: - """ - Save the HTML content to a file. + """Save the HTML content to a file. Args: url: The URL of the page. @@ -265,19 +284,18 @@ def _save_html_content(self, url: str, html_content: str) -> str: file_path = self._get_file_path_from_url(url) # Create parent directories if needed - os.makedirs(os.path.dirname(file_path), exist_ok=True) + Path(file_path).parent.mkdir(parents=True, exist_ok=True) # Save the HTML content - with open(file_path, "w", encoding="utf-8") as f: + with Path(file_path).open("w", encoding="utf-8") as f: f.write(html_content) - logging.info(f"Saved HTML content to {file_path}") + logger.info("Saved HTML content to %s", file_path) return file_path def _get_file_path_from_url(self, url: str) -> str: - """ - Convert a URL to a file path. + """Convert a URL to a file path. Args: url: The URL to convert. @@ -308,34 +326,35 @@ def _get_file_path_from_url(self, url: str) -> str: # Create full path with domain subdirectory for organization parsed_url = urlparse(url) domain = parsed_url.netloc - full_path = os.path.join(self.output_dir, domain, path.lstrip("/")) + full_path = Path(self.output_dir) / domain / path.lstrip("/") # Ensure the path stays within output_dir (security check for path traversal) - abs_full_path = os.path.abspath(full_path) - abs_output_dir = os.path.abspath(self.output_dir) - if not abs_full_path.startswith(abs_output_dir): - raise ValueError(f"Invalid URL results in path outside output directory: {url}") + abs_full_path = full_path.resolve() + abs_output_dir = Path(self.output_dir).resolve() + if not str(abs_full_path).startswith(str(abs_output_dir)): + msg = f"Invalid URL results in path outside output directory: {url}" + raise ValueError(msg) - return full_path + return str(full_path) def _save_url_mappings(self) -> None: - """ - Save the URL mappings to a JSON file. + """Save the URL mappings to a JSON file. This allows future reference of which file corresponds to which URL. """ try: - with open(self.mapping_file, "w", encoding="utf-8") as f: + with Path(self.mapping_file).open("w", encoding="utf-8") as f: json.dump(self.url_mappings, f, indent=2, ensure_ascii=False) - logging.debug( - f"Saved {len(self.url_mappings)} URL mappings to {self.mapping_file}", + logger.debug( + "Saved %d URL mappings to %s", + len(self.url_mappings), + self.mapping_file, ) - except Exception as e: - logging.error(f"Error saving URL mappings: {str(e)}") + except Exception: + logger.exception("Error saving URL mappings") def _extract_links(self, soup: BeautifulSoup, base_url: str) -> list[str]: - """ - Extract valid links to follow from a BeautifulSoup object. + """Extract valid links to follow from a BeautifulSoup object. Args: soup: BeautifulSoup object of the parsed HTML. @@ -361,10 +380,12 @@ def _extract_links(self, soup: BeautifulSoup, base_url: str) -> list[str]: # Convert relative URLs to absolute URLs absolute_url = urljoin(base_url, href) - # Filter out non-http(s) schemes and fragments - if absolute_url.startswith(("http://", "https://")) and "#" not in absolute_url: - # Check if the domain is allowed - if self._is_allowed_domain(absolute_url): - links.append(absolute_url) + # Filter out non-http(s) schemes and fragments, and check if the domain is allowed + if ( + absolute_url.startswith(("http://", "https://")) + and "#" not in absolute_url + and self._is_allowed_domain(absolute_url) + ): + links.append(absolute_url) return links diff --git a/tapio/crawler/runner.py b/tapio/crawler/runner.py index 26b81fd..da26a4b 100644 --- a/tapio/crawler/runner.py +++ b/tapio/crawler/runner.py @@ -1,3 +1,5 @@ +"""Runner that wires configuration into the crawler.""" + import asyncio import logging @@ -6,24 +8,19 @@ class CrawlerRunner: - """ - Runs an async crawler process to crawl websites and save HTML content. + """Runs an async crawler process to crawl websites and save HTML content. This class provides a high-level interface to run a crawler using site configurations and collect the scraped results. """ def __init__(self) -> None: - """ - Initialize the crawler runner with logging configuration. - """ + """Initialize the crawler runner with logging configuration.""" self.logger = logging.getLogger(__name__) self.setup_logging() def setup_logging(self) -> None: - """ - Set up logging configuration for the crawler runner. - """ + """Set up logging configuration for the crawler runner.""" logging.basicConfig( level=logging.INFO, format="%(asctime)s [%(levelname)s] %(message)s", @@ -35,8 +32,7 @@ async def run_async( site_name: str, site_config: SiteConfig, ) -> list[CrawlResult]: - """ - Run the crawler asynchronously and return crawled page data. + """Run the crawler asynchronously and return crawled page data. Args: site_name: Name/identifier of the site being crawled. @@ -45,7 +41,11 @@ async def run_async( Returns: List of CrawlResult dictionaries containing page data. """ - self.logger.info(f"Starting async crawl for site '{site_name}' with URL: {site_config.base_url}") + self.logger.info( + "Starting async crawl for site '%s' with URL: %s", + site_name, + site_config.base_url, + ) # Create and configure the crawler crawler = BaseCrawler(site_name, site_config) @@ -53,7 +53,7 @@ async def run_async( # Run the crawler results = await crawler.crawl() - self.logger.info(f"Async crawling completed. Processed {len(results)} items.") + self.logger.info("Async crawling completed. Processed %d items.", len(results)) return results def run( @@ -61,8 +61,7 @@ def run( site_name: str, site_config: SiteConfig, ) -> list[CrawlResult]: - """ - Run the crawler synchronously and return crawled page data. + """Run the crawler synchronously and return crawled page data. This is a convenience method that wraps the async version. diff --git a/tapio/factories.py b/tapio/factories.py index 774ea0e..c147ce1 100644 --- a/tapio/factories.py +++ b/tapio/factories.py @@ -5,7 +5,7 @@ instances without tight coupling. """ -from langchain_core.embeddings import Embeddings # type: ignore[import-not-found] +from langchain_core.embeddings import Embeddings from langchain_huggingface import HuggingFaceEmbeddings from tapio.config.config_models import RAGConfig diff --git a/tapio/models/__init__.py b/tapio/models/__init__.py index a8d8f72..9f1010e 100644 --- a/tapio/models/__init__.py +++ b/tapio/models/__init__.py @@ -1,4 +1,5 @@ -# This file initializes the models module. +"""Data models for the Tapio Assistant.""" + from tapio.models.document import Document __all__ = ["Document"] diff --git a/tapio/models/document.py b/tapio/models/document.py index e9e01e8..117e1a0 100644 --- a/tapio/models/document.py +++ b/tapio/models/document.py @@ -1,10 +1,23 @@ +"""Plain document model used for simple URL/content/metadata grouping.""" + + class Document: - def __init__(self, url: str, content: str, metadata: dict): + """A piece of content fetched from a URL, with associated metadata.""" + + def __init__(self, url: str, content: str, metadata: dict) -> None: + """Initialize the document. + + Args: + url: Source URL of the document + content: Document content + metadata: Arbitrary metadata associated with the document + """ self.url = url self.content = content self.metadata = metadata def to_dict(self) -> dict[str, str | dict]: + """Convert the document to a plain dictionary.""" return { "url": self.url, "content": self.content, diff --git a/tapio/parser/__init__.py b/tapio/parser/__init__.py index fa177b8..0b97288 100644 --- a/tapio/parser/__init__.py +++ b/tapio/parser/__init__.py @@ -1,5 +1,4 @@ -""" -Parser module for tapio. +"""Parser module for tapio. This module contains the Parser class for extracting structured content from HTML files saved by the crawler module. diff --git a/tapio/parser/parser.py b/tapio/parser/parser.py index 93ed82e..3ff6b28 100644 --- a/tapio/parser/parser.py +++ b/tapio/parser/parser.py @@ -7,7 +7,7 @@ import json import logging import os -from datetime import datetime +from datetime import UTC, datetime from pathlib import Path from typing import Any from urllib.parse import urljoin @@ -21,18 +21,19 @@ ) from tapio.config.config_models import SiteConfig +# Minimum path parts (subdir + filename) to preserve directory structure in output +MIN_NESTED_PATH_PARTS = 2 + class DirectoryScope: - """ - Context manager for temporarily changing directory context without modifying instance state. + """Context manager for temporarily changing directory context without modifying instance state. This provides a thread-safe way to create a scoped directory context without directly modifying the instance's state. """ - def __init__(self, original_path: str, scoped_path: str): - """ - Initialize the directory scope context manager. + def __init__(self, original_path: str, scoped_path: str) -> None: + """Initialize the directory scope context manager. Args: original_path: The original directory path to preserve @@ -51,20 +52,17 @@ def __exit__( exc_val: BaseException | None, exc_tb: object, ) -> None: - """ - Exit the context, no cleanup needed as we don't modify state. + """Exit the context, no cleanup needed as we don't modify state. Args: exc_type: The exception type if an exception was raised in the context exc_val: The exception value if an exception was raised in the context exc_tb: The traceback if an exception was raised in the context """ - pass class Parser: - """ - HTML content parser that uses site-specific configurations. + """HTML content parser that uses site-specific configurations. This parser loads configurations for different websites and extracts content using the appropriate selectors for each site. Configuration @@ -111,12 +109,12 @@ def __init__( self._load_url_mappings() # Create output directory if it doesn't exist - os.makedirs(self.output_dir, exist_ok=True) + Path(self.output_dir).mkdir(parents=True, exist_ok=True) - self.logger.info(f"Initialized Parser for {self.site}") + self.logger.info("Initialized Parser for %s", self.site) def setup_logging(self) -> None: - """Set up logging configuration""" + """Set up logging configuration.""" logging.basicConfig( level=logging.INFO, format="%(asctime)s [%(levelname)s] %(message)s", @@ -124,22 +122,21 @@ def setup_logging(self) -> None: ) def _load_url_mappings(self) -> None: - """Load URL mappings from the JSON file""" - mapping_file = os.path.join(self.input_dir, "url_mappings.json") - if os.path.exists(mapping_file): + """Load URL mappings from the JSON file.""" + mapping_file = Path(self.input_dir) / "url_mappings.json" + if mapping_file.exists(): try: - with open(mapping_file, encoding="utf-8") as f: + with mapping_file.open(encoding="utf-8") as f: self.url_mappings = json.load(f) - self.logger.info(f"Loaded {len(self.url_mappings)} URL mappings") - except Exception as e: - self.logger.error(f"Error loading URL mappings: {str(e)}") + self.logger.info("Loaded %d URL mappings", len(self.url_mappings)) + except Exception: + self.logger.exception("Error loading URL mappings") else: - self.logger.warning(f"URL mapping file not found: {mapping_file}") + self.logger.warning("URL mapping file not found: %s", mapping_file) # Still continue processing - URL mappings are optional def _get_original_url(self, file_path: str | Path) -> str | None: - """ - Get the original URL for a file path from the URL mappings. + """Get the original URL for a file path from the URL mappings. Args: file_path: Path to the HTML file @@ -157,12 +154,11 @@ def _get_original_url(self, file_path: str | Path) -> str | None: ) if not url: - self.logger.debug(f"No URL mapping found for {file_path}") + self.logger.debug("No URL mapping found for %s", file_path) return url def _try_exact_match(self, file_path_str: str) -> str | None: - """ - Try exact match in URL mappings. + """Try exact match in URL mappings. Args: file_path_str: String representation of the file path @@ -176,8 +172,7 @@ def _try_exact_match(self, file_path_str: str) -> str | None: return None def _try_relative_path_match(self, file_path_str: str) -> str | None: - """ - Try relative path matching with OS compatibility. + """Try relative path matching with OS compatibility. Args: file_path_str: String representation of the file path @@ -192,12 +187,11 @@ def _try_relative_path_match(self, file_path_str: str) -> str | None: if path_variant in self.url_mappings: return self.url_mappings[path_variant].get("url") except Exception as e: - self.logger.debug(f"Error in relative path matching: {e}") + self.logger.debug("Error in relative path matching: %s", e) return None def _try_filename_match(self, file_path_str: str) -> str | None: - """ - Try matching by filename only. + """Try matching by filename only. Args: file_path_str: String representation of the file path @@ -206,20 +200,19 @@ def _try_filename_match(self, file_path_str: str) -> str | None: Original URL or None if not found """ try: - filename = os.path.basename(file_path_str) + filename = Path(file_path_str).name for key, value in self.url_mappings.items(): if key.endswith(filename): return value.get("url") except Exception as e: - self.logger.debug(f"Error in filename matching: {e}") + self.logger.debug("Error in filename matching: %s", e) return None # The _load_site_config and _load_config_registry methods have been replaced # by using the ConfigManager from tapio.config def _parse_html(self, html_content: str) -> tuple[str, str]: - """ - Parse HTML content using site-specific selectors. + """Parse HTML content using site-specific selectors. Args: html_content: Raw HTML content @@ -265,11 +258,11 @@ def _parse_html(self, html_content: str) -> tuple[str, str]: # Convert HTML to Markdown using site-specific settings markdown_content = self._html_to_markdown(content_html) - return title, markdown_content - except Exception as e: - self.logger.error(f"Error parsing HTML: {str(e)}") - return "Error Parsing Page", f"Error parsing the HTML content: {str(e)}" + self.logger.exception("Error parsing HTML") + return "Error Parsing Page", f"Error parsing the HTML content: {e!s}" + else: + return title, markdown_content @staticmethod def _convert_element_link_to_absolute( @@ -278,8 +271,7 @@ def _convert_element_link_to_absolute( base_url: str, absolute_prefixes: tuple[str, ...], ) -> bool: - """ - Convert a single element's link attribute to absolute URL if it's relative. + """Convert a single element's link attribute to absolute URL if it's relative. Args: element: HTML element to process @@ -299,8 +291,7 @@ def _convert_element_link_to_absolute( return True def _convert_relative_links_to_absolute(self, html_content: str) -> str: - """ - Convert relative links in HTML content to absolute URLs. + """Convert relative links in HTML content to absolute URLs. Args: html_content: HTML content with potentially relative links @@ -339,13 +330,12 @@ def _convert_relative_links_to_absolute(self, html_content: str) -> str: # Convert back to string return html.tostring(tree, encoding="unicode", pretty_print=True) - except Exception as e: - self.logger.error(f"Error converting relative links: {str(e)}") + except Exception: + self.logger.exception("Error converting relative links") return html_content # Return original content if there's an error def _html_to_markdown(self, html_content: str) -> str: - """ - Convert HTML to Markdown using site-specific configuration. + """Convert HTML to Markdown using site-specific configuration. Args: html_content: HTML content to convert @@ -364,13 +354,10 @@ def _html_to_markdown(self, html_content: str) -> str: text_maker.ignore_tables = config.ignore_tables # Convert HTML to Markdown - markdown_text = text_maker.handle(html_content) - - return markdown_text + return text_maker.handle(html_content) def _construct_base_url_from_path(self, file_path: str) -> str: - """ - Construct base URL from file path when no URL mapping exists. + """Construct base URL from file path when no URL mapping exists. Args: file_path: Path to the HTML file @@ -384,7 +371,7 @@ def _construct_base_url_from_path(self, file_path: str) -> str: if rel_path.startswith(".."): # File is outside input directory - self.logger.info(f"File outside input dir, using base URL: {self.config.base_url}") + self.logger.info("File outside input dir, using base URL: %s", self.config.base_url) return str(self.config.base_url) # Normalize path and construct URL @@ -392,18 +379,19 @@ def _construct_base_url_from_path(self, file_path: str) -> str: # Convert HttpUrl to string for urljoin base_url_str = str(self.config.base_url) constructed_url = urljoin(base_url_str, normalized_path) - self.logger.info(f"Constructed base URL: {constructed_url}") - return constructed_url + self.logger.info("Constructed base URL: %s", constructed_url) except ValueError: self.logger.warning( - f"Error constructing URL from path, using base URL: {self.config.base_url}", - ) # noqa: E501 + "Error constructing URL from path, using base URL: %s", + self.config.base_url, + ) return str(self.config.base_url) + else: + return constructed_url def _extract_domain_from_path(self, file_path: str | Path) -> str: - """ - Extract the first part of the path (typically a domain or language directory). + """Extract the first part of the path (typically a domain or language directory). Args: file_path: Path to the HTML file @@ -415,17 +403,14 @@ def _extract_domain_from_path(self, file_path: str | Path) -> str: # Get the path relative to the input directory rel_path = Path(file_path).relative_to(Path(self.input_dir)) path_parts = rel_path.parts - if len(path_parts) > 0: - first_part = path_parts[0] - else: - first_part = "unknown" - return first_part + first_part = path_parts[0] if len(path_parts) > 0 else "unknown" except ValueError: return "unknown" + else: + return first_part def _create_directory_scope(self) -> DirectoryScope: - """ - Create a directory scope for operations on the input directory. + """Create a directory scope for operations on the input directory. Returns: A DirectoryScope context manager that can be used in a with statement @@ -440,8 +425,7 @@ def _parse_file_with_context( self, html_file: str | Path, ) -> dict[str, Any] | None: - """ - Parse a single file with URL context preservation. + """Parse a single file with URL context preservation. Args: html_file: Path to the HTML file to parse @@ -453,8 +437,8 @@ def _parse_file_with_context( # Parse the file with URL context preservation return self.parse_file(html_file, preserve_url_context=True) - except Exception as e: - self.logger.error(f"Error parsing {html_file} with context: {str(e)}") + except Exception: + self.logger.exception("Error parsing %s with context", html_file) return None def parse_file( @@ -462,8 +446,7 @@ def parse_file( html_file: str | Path, preserve_url_context: bool = False, ) -> dict[str, Any] | None: - """ - Parse a single HTML file from the configured domain. + """Parse a single HTML file from the configured domain. Args: html_file: Path to the HTML file @@ -473,7 +456,6 @@ def parse_file( Returns: Dictionary containing information about the parsed file """ - # Get the original URL of this file from URL mappings if available original_url = self._get_original_url(html_file) @@ -490,11 +472,11 @@ def parse_file( # Parse the file html_file_path = Path(html_file) - self.logger.info(f"Parsing {html_file_path}") + self.logger.info("Parsing %s", html_file_path) try: # Read the HTML content - with open(html_file_path, encoding="utf-8") as f: + with html_file_path.open(encoding="utf-8") as f: html_content = f.read() # Extract the domain from the file path @@ -519,8 +501,8 @@ def parse_file( "domain": domain, } - except Exception as e: - self.logger.error(f"Error parsing {html_file_path}: {str(e)}") + except Exception: + self.logger.exception("Error parsing %s", html_file_path) return None finally: # Restore the original base URL only if not preserving context @@ -528,8 +510,7 @@ def parse_file( self.current_base_url = original_base_url def _create_metadata(self, file_path: str | Path, title: str) -> dict[str, Any]: - """ - Create metadata for the markdown file including the original URL. + """Create metadata for the markdown file including the original URL. Args: file_path: Path to the HTML file @@ -546,7 +527,7 @@ def _create_metadata(self, file_path: str | Path, title: str) -> dict[str, Any]: "source_file": str(file_path), "title": title, "domain": domain, - "parse_timestamp": datetime.now().isoformat(), + "parse_timestamp": datetime.now(UTC).isoformat(), "parser": self.__class__.__name__, } @@ -558,8 +539,8 @@ def _create_metadata(self, file_path: str | Path, title: str) -> dict[str, Any]: return metadata def _get_output_filename(self, html_file_path: Path) -> str: - """ - Generate an output filename for the parsed markdown file. + """Generate an output filename for the parsed markdown file. + Preserves the directory structure from the input directory. Args: @@ -574,16 +555,15 @@ def _get_output_filename(self, html_file_path: Path) -> str: parts = rel_path.parts # If there are multiple parts in the path, preserve the structure - if len(parts) >= 2: + if len(parts) >= MIN_NESTED_PATH_PARTS: # Preserve the original directory structure but replace .html extension - rel_output_path = str(rel_path).replace(".html", "") - return rel_output_path - else: - # Just use filename if there's only one part - return html_file_path.stem + return str(rel_path).replace(".html", "") except ValueError: # If the file is not in the input directory, just use its name return html_file_path.stem + else: + # Just use filename if there's only one part + return html_file_path.stem def _save_markdown( self, @@ -592,8 +572,7 @@ def _save_markdown( content: str, metadata: dict[str, Any], ) -> str: - """ - Save content as a markdown file with YAML frontmatter. + """Save content as a markdown file with YAML frontmatter. Args: filename: Base filename (without extension) @@ -609,25 +588,24 @@ def _save_markdown( filename = f"{filename}.md" # Create the full output path - output_path = os.path.join(self.output_dir, filename) + output_path = Path(self.output_dir) / filename # Create parent directories if needed - os.makedirs(os.path.dirname(output_path), exist_ok=True) + output_path.parent.mkdir(parents=True, exist_ok=True) # Prepare the markdown content with frontmatter frontmatter = yaml.dump(metadata, default_flow_style=False) markdown_content = f"---\n{frontmatter}---\n\n# {title}\n\n{content}\n" # Save the file - with open(output_path, "w", encoding="utf-8") as f: + with output_path.open("w", encoding="utf-8") as f: f.write(markdown_content) - self.logger.info(f"Saved markdown to {output_path}") - return output_path + self.logger.info("Saved markdown to %s", output_path) + return str(output_path) def parse_all(self) -> list[dict[str, Any]]: - """ - Parse all HTML files in the configured site's directory. + """Parse all HTML files in the configured site's directory. This parser is focused on processing only files within the specific domain directory defined in the configuration. @@ -636,7 +614,9 @@ def parse_all(self) -> list[dict[str, Any]]: List of dictionaries containing information about parsed files """ self.logger.info( - f"Parsing HTML files for site '{self.site}' from directory '{self.input_dir}'", + "Parsing HTML files for site '%s' from directory '%s'", + self.site, + self.input_dir, ) # Create a directory scope for processing only files in the site's directory @@ -647,13 +627,9 @@ def parse_all(self) -> list[dict[str, Any]]: html_dir = scoped_dir # Find all HTML files recursively - html_files = [] - for root, _, files in os.walk(html_dir): - for file in files: - if file.endswith(".html"): - html_files.append(os.path.join(root, file)) + html_files = list(Path(html_dir).rglob("*.html")) - self.logger.info(f"Found {len(html_files)} HTML files to parse") + self.logger.info("Found %d HTML files to parse", len(html_files)) # Parse each file with URL context preservation for html_file in html_files: @@ -661,19 +637,18 @@ def parse_all(self) -> list[dict[str, Any]]: result = self._parse_file_with_context(html_file) if result: results.append(result) - except Exception as e: - self.logger.error(f"Error parsing {html_file}: {str(e)}") + except Exception: + self.logger.exception("Error parsing %s", html_file) # Create an index file for all parsed files if results: self._create_index(results) - self.logger.info(f"Parsed {len(results)} files") + self.logger.info("Parsed %d files", len(results)) return results def _create_index(self, results: list[dict[str, Any]]) -> str: - """ - Create an index markdown file for all parsed content. + """Create an index markdown file for all parsed content. Args: results: List of parsing results @@ -681,9 +656,9 @@ def _create_index(self, results: list[dict[str, Any]]) -> str: Returns: Path to the index file """ - index_path = os.path.join(self.output_dir, "index.md") + index_path = Path(self.output_dir) / "index.md" - with open(index_path, "w", encoding="utf-8") as f: + with index_path.open("w", encoding="utf-8") as f: f.write(f"# {self.site or 'Site'} Parsed Content Index\n\n") f.write(f"Total pages parsed: {len(results)}\n\n") f.write("| Title | Source File | Output File |\n") @@ -691,19 +666,18 @@ def _create_index(self, results: list[dict[str, Any]]) -> str: for result in results: title = result.get("title", "Untitled") - source = os.path.basename(result.get("source_file", "")) - output = os.path.basename(result.get("output_file", "")) + source = Path(result.get("source_file", "")).name + output = Path(result.get("output_file", "")).name # Create relative links to the files f.write(f"| {title} | {source} | [{output}]({output}) |\n") - self.logger.info(f"Created index at {index_path}") - return index_path + self.logger.info("Created index at %s", index_path) + return str(index_path) @classmethod def list_available_site_configs(cls, config_path: str | None = None) -> list[str]: - """ - List all available site configurations. + """List all available site configurations. Args: config_path: Optional path to custom config file @@ -720,8 +694,7 @@ def get_site_config( site: str, config_path: str | None = None, ) -> SiteConfig | None: - """ - Get detailed information about a specific site configuration. + """Get detailed information about a specific site configuration. Args: site: Site to get configuration for diff --git a/tapio/prompts/__init__.py b/tapio/prompts/__init__.py index 3e985a9..5b64891 100644 --- a/tapio/prompts/__init__.py +++ b/tapio/prompts/__init__.py @@ -2,4 +2,4 @@ from tapio.prompts.prompt_loader import get_prompt_path, load_prompt -__all__ = ["load_prompt", "get_prompt_path"] +__all__ = ["get_prompt_path", "load_prompt"] diff --git a/tapio/prompts/prompt_loader.py b/tapio/prompts/prompt_loader.py index a25723b..9504b73 100644 --- a/tapio/prompts/prompt_loader.py +++ b/tapio/prompts/prompt_loader.py @@ -1,7 +1,6 @@ """Utility functions for loading prompt templates from files.""" import logging -import os from pathlib import Path from string import Template from typing import Any @@ -49,11 +48,12 @@ def load_prompt(prompt_name: str, **kwargs: Any) -> str: prompt_path = get_prompt_path(prompt_name) try: - if not os.path.exists(prompt_path): - logger.warning(f"Prompt template not found: {prompt_path}") + prompt_path_obj = Path(prompt_path) + if not prompt_path_obj.exists(): + logger.warning("Prompt template not found: %s", prompt_path) return "" - with open(prompt_path, encoding="utf-8") as file: + with prompt_path_obj.open(encoding="utf-8") as file: prompt_template = file.read() # If kwargs are provided, substitute them in the template @@ -61,8 +61,8 @@ def load_prompt(prompt_name: str, **kwargs: Any) -> str: template = Template(prompt_template) return template.safe_substitute(**kwargs) - return prompt_template - - except Exception as e: - logger.error(f"Error loading prompt template {prompt_name}: {e}") + except Exception: + logger.exception("Error loading prompt template %s", prompt_name) return "" + else: + return prompt_template diff --git a/tapio/services/__init__.py b/tapio/services/__init__.py index e1f1f18..3490d4e 100644 --- a/tapio/services/__init__.py +++ b/tapio/services/__init__.py @@ -1,4 +1,6 @@ +"""Service layer for document retrieval and LLM interaction.""" + from tapio.services.document_retrieval_service import DocumentRetrievalService from tapio.services.llm_service import LLMService -__all__ = ["LLMService", "DocumentRetrievalService"] +__all__ = ["DocumentRetrievalService", "LLMService"] diff --git a/tapio/services/document_retrieval_service.py b/tapio/services/document_retrieval_service.py index 73f1411..ac50545 100644 --- a/tapio/services/document_retrieval_service.py +++ b/tapio/services/document_retrieval_service.py @@ -53,16 +53,17 @@ def retrieve_documents(self, query_text: str) -> list[Any]: List of retrieved documents """ try: - logger.info(f"Retrieving documents for query: {query_text}") + logger.info("Retrieving documents for query: %s", query_text) retrieved_docs = self.vector_store.query( query_text=query_text, n_results=self.num_results, ) - logger.info(f"Retrieved {len(retrieved_docs)} documents") - return retrieved_docs - except Exception as e: - logger.error(f"Error retrieving documents: {e}") + logger.info("Retrieved %d documents", len(retrieved_docs)) + except Exception: + logger.exception("Error retrieving documents") return [] + else: + return retrieved_docs def format_documents_as_context(self, documents: list[Any]) -> str: """Format retrieved documents as context for LLM input. @@ -76,11 +77,7 @@ def format_documents_as_context(self, documents: list[Any]) -> str: if not documents: return "" - context_docs = [] - for doc in documents: - # Extract content for context - if hasattr(doc, "page_content"): - context_docs.append(doc.page_content) + context_docs = [doc.page_content for doc in documents if hasattr(doc, "page_content")] return "\n\n".join(context_docs) diff --git a/tapio/services/llm_service.py b/tapio/services/llm_service.py index b7b0665..9736a5f 100644 --- a/tapio/services/llm_service.py +++ b/tapio/services/llm_service.py @@ -2,12 +2,43 @@ import logging from collections.abc import Generator +from typing import Any import ollama # Configure logging logger = logging.getLogger(__name__) +# Cap on prior turns included as context, to avoid overflowing the model's context window +MAX_HISTORY_MESSAGES = 10 + + +def _build_messages( + prompt: str, + system_prompt: str | None, + history: list[dict[str, Any]] | None, +) -> list[dict[str, Any]]: + """Build the ollama chat messages list from a prompt, optional system prompt, and history. + + Args: + prompt: The current user prompt + system_prompt: Optional system prompt to set context + history: Optional prior conversation turns (role/content dicts) + + Returns: + Messages list ready to pass to `ollama.chat` + """ + messages: list[dict[str, Any]] = [] + + if system_prompt: + messages.append({"role": "system", "content": system_prompt}) + + if history: + messages.extend(history[-MAX_HISTORY_MESSAGES:]) + + messages.append({"role": "user", "content": prompt}) + return messages + class LLMService: """Service for interacting with LLM models through Ollama.""" @@ -17,7 +48,7 @@ def __init__( model_name: str = "llama3.2", max_tokens: int = 1024, temperature: float = 0.7, - ): + ) -> None: """Initialize the LLM service with the given model settings. Args: @@ -28,7 +59,35 @@ def __init__( self.model_name = model_name self.max_tokens = max_tokens self.temperature = temperature - logger.info(f"Initialized LLM service with model: {model_name}") + logger.info("Initialized LLM service with model: %s", model_name) + + def _describe_match(self, available_model_name: str) -> str | None: + """Describe how an available model matches the configured model, if at all. + + Handles exact matches and `:tag` variations (e.g. requesting "llama3.2" should + match an available "llama3.2:latest"). + + Args: + available_model_name: A model name reported by Ollama + + Returns: + A log-ready description of the match, or None if it doesn't match + """ + if available_model_name == self.model_name: + return f"Found exact matching model: {available_model_name}" + + # If user provided base name (no tag), match any variant with tags + if ":" not in self.model_name and available_model_name.startswith(f"{self.model_name}:"): + return f"Found matching model: {available_model_name} for base name {self.model_name}" + + # If user provided name with tag, check if base names match + if ":" in self.model_name and ":" in available_model_name: + user_base = self.model_name.split(":")[0] + model_base = available_model_name.split(":", maxsplit=1)[0] + if user_base == model_base: + return f"Found matching model: {available_model_name} for requested {self.model_name}" + + return None def check_model_availability(self) -> bool: """Check if Ollama is running and has the required model. @@ -43,77 +102,45 @@ def check_model_availability(self) -> bool: logger.warning("No models found in Ollama") return False - # Check if the model exists - allow for model name variations like llama3.2:latest - model_exists = False - # Extract model names from the Model objects - available_models = [] - for model_obj in models_response.models: - # Each model object has a 'model' attribute with the name - model_name = model_obj.model - if model_name: # Ensure we have a valid model name - available_models.append(model_name) - - # Log available models - logger.info( - f"Available Ollama models: {', '.join(available_models)}", - ) + available_models = [model_obj.model for model_obj in models_response.models if model_obj.model] + logger.info("Available Ollama models: %s", ", ".join(available_models)) - # Check for exact match or base name match (handle :tag variations) - for model_name in available_models: - # Exact match - if model_name == self.model_name: - model_exists = True - logger.info(f"Found exact matching model: {model_name}") - break - # If user provided base name (no tag), match any variant with tags - elif ":" not in self.model_name and model_name.startswith(f"{self.model_name}:"): - model_exists = True - logger.info( - f"Found matching model: {model_name} for base name {self.model_name}", - ) - break - # If user provided name with tag, check if base names match - elif ":" in self.model_name and ":" in model_name: - user_base = self.model_name.split(":")[0] - model_base = model_name.split(":")[0] - if user_base == model_base: - model_exists = True - logger.info( - f"Found matching model: {model_name} for requested {self.model_name}", - ) - break - - if not model_exists: + match_descriptions = (self._describe_match(m) for m in available_models) + match = next((description for description in match_descriptions if description), None) + if match is None: logger.warning( - f"{self.model_name} model not found in Ollama. Please pull it with 'ollama pull {self.model_name}'", + "%s model not found in Ollama. Please pull it with 'ollama pull %s'", + self.model_name, + self.model_name, ) return False - return True + logger.info(match) except Exception as e: - logger.warning(f"Could not connect to Ollama: {e}") + logger.warning("Could not connect to Ollama: %s", e) logger.warning("Make sure Ollama is running") return False + else: + return True - def generate_response(self, prompt: str, system_prompt: str | None = None) -> str | dict: + def generate_response( + self, + prompt: str, + system_prompt: str | None = None, + history: list[dict[str, Any]] | None = None, + ) -> str | dict: """Generate a response from the LLM model. Args: prompt: The prompt to generate a response for system_prompt: Optional system prompt to set context + history: Optional prior conversation turns to include as context Returns: str: The generated response """ try: - messages = [] - - # Add system message if provided - if system_prompt: - messages.append({"role": "system", "content": system_prompt}) - - # Add user message - messages.append({"role": "user", "content": prompt}) + messages = _build_messages(prompt, system_prompt, history) response = ollama.chat( model=self.model_name, @@ -124,32 +151,31 @@ def generate_response(self, prompt: str, system_prompt: str | None = None) -> st }, ) return response["message"]["content"] - except Exception as e: - logger.error(f"Error generating response: {e}") + except Exception: + logger.exception("Error generating response") return ( f"Error: Could not generate a response. " f"Please check if Ollama is running with the {self.model_name} model." ) - def generate_response_stream(self, prompt: str, system_prompt: str | None = None) -> Generator[str]: + def generate_response_stream( + self, + prompt: str, + system_prompt: str | None = None, + history: list[dict[str, Any]] | None = None, + ) -> Generator[str]: """Generate a streaming response from the LLM model. Args: prompt: The prompt to generate a response for system_prompt: Optional system prompt to set context + history: Optional prior conversation turns to include as context Yields: str: Chunks of the generated response """ try: - messages = [] - - # Add system message if provided - if system_prompt: - messages.append({"role": "system", "content": system_prompt}) - - # Add user message - messages.append({"role": "user", "content": prompt}) + messages = _build_messages(prompt, system_prompt, history) # Use streaming chat with optimized options for faster response logger.info("About to call ollama.chat with streaming") @@ -174,13 +200,11 @@ def generate_response_stream(self, prompt: str, system_prompt: str | None = None for chunk in stream: if "message" in chunk and "content" in chunk["message"]: content = chunk["message"]["content"] - logger.debug( - f"LLM yielding chunk of {len(content)} characters", - ) + logger.debug("LLM yielding chunk of %d characters", len(content)) yield content - except Exception as e: - logger.error(f"Error generating streaming response: {e}") + except Exception: + logger.exception("Error generating streaming response") yield ( f"Error: Could not generate a response. " f"Please check if Ollama is running with the {self.model_name} model." diff --git a/tapio/services/rag_orchestrator.py b/tapio/services/rag_orchestrator.py index 5834208..93a798f 100644 --- a/tapio/services/rag_orchestrator.py +++ b/tapio/services/rag_orchestrator.py @@ -89,11 +89,12 @@ def query( response = self.llm_service.generate_response( prompt=user_prompt, system_prompt=system_prompt, + history=history, ) return str(response), retrieved_docs - except Exception as e: - logger.error(f"Error generating RAG response: {e}") + except Exception: + logger.exception("Error generating RAG response") return ( "I encountered an error while processing your query. Please try again.", [], @@ -140,6 +141,7 @@ def stream_generator() -> Generator[str]: llm_response_stream = self.llm_service.generate_response_stream( prompt=user_prompt, system_prompt=system_prompt, + history=history, ) try: logger.info("Starting to consume LLM response stream") diff --git a/tapio/utils/__init__.py b/tapio/utils/__init__.py index 7a4710b..7b63b71 100644 --- a/tapio/utils/__init__.py +++ b/tapio/utils/__init__.py @@ -17,13 +17,10 @@ ) __all__ = [ - # Embedding utilities "EmbeddingGenerator", - # Markdown utilities - "read_markdown_file", - "find_markdown_files", - # Text utilities "chunk_html_content", + "find_markdown_files", "is_pdf_url", + "read_markdown_file", "remove_javascript", ] diff --git a/tapio/utils/embedding_utils.py b/tapio/utils/embedding_utils.py index 0e32842..07ac543 100644 --- a/tapio/utils/embedding_utils.py +++ b/tapio/utils/embedding_utils.py @@ -13,20 +13,18 @@ class EmbeddingGenerator: """Generate embeddings using LangChain's SentenceTransformerEmbeddings.""" - def __init__(self, model_name: str = "all-MiniLM-L6-v2"): - """ - Initialize the embedding generator. + def __init__(self, model_name: str = "all-MiniLM-L6-v2") -> None: + """Initialize the embedding generator. Args: model_name: Name of the embedding model to use """ self.model_name = model_name self.embedding_model = SentenceTransformerEmbeddings(model_name=model_name) - logger.info(f"Initialized embedding model: {model_name}") + logger.info("Initialized embedding model: %s", model_name) def generate(self, text: str) -> list[float] | None: - """ - Generate an embedding for a piece of text. + """Generate an embedding for a piece of text. Args: text: Text to generate an embedding for @@ -37,14 +35,14 @@ def generate(self, text: str) -> list[float] | None: try: # LangChain's embed_query returns a single embedding vector embedding = self.embedding_model.embed_query(text) - return embedding - except Exception as e: - logger.error(f"Error generating embedding: {e}") + except Exception: + logger.exception("Error generating embedding") return None + else: + return embedding def generate_batch(self, texts: list[str]) -> list[list[float] | None]: - """ - Generate embeddings for multiple texts. + """Generate embeddings for multiple texts. Args: texts: List of texts to generate embeddings for @@ -59,8 +57,8 @@ def generate_batch(self, texts: list[str]) -> list[list[float] | None]: # Cast the return type to match the expected signature # This is safe because we know embeddings is a list[list[float]] # which is a subtype of list[list[float] | None] - return cast(list[list[float] | None], embeddings) - except Exception as e: - logger.error(f"Error generating batch embeddings: {e}") + return cast("list[list[float] | None]", embeddings) + except Exception: + logger.exception("Error generating batch embeddings") # Return a list of Nones with the same length as the input return [None for _ in texts] diff --git a/tapio/utils/markdown_utils.py b/tapio/utils/markdown_utils.py index 450a2f8..bdfa705 100644 --- a/tapio/utils/markdown_utils.py +++ b/tapio/utils/markdown_utils.py @@ -1,7 +1,7 @@ """Utilities for working with markdown content.""" import logging -import os +from pathlib import Path import frontmatter # type: ignore[import-untyped] @@ -11,8 +11,7 @@ def read_markdown_file(file_path: str) -> tuple[dict, str]: - """ - Read a markdown file with frontmatter and return the metadata and content separately. + """Read a markdown file with frontmatter and return the metadata and content separately. Args: file_path: Path to the markdown file @@ -21,7 +20,7 @@ def read_markdown_file(file_path: str) -> tuple[dict, str]: Tuple containing the metadata dictionary and content string """ try: - with open(file_path, encoding="utf-8") as f: + with Path(file_path).open(encoding="utf-8") as f: post = frontmatter.load(f) metadata = post.metadata content = post.content @@ -37,14 +36,13 @@ def read_markdown_file(file_path: str) -> tuple[dict, str]: metadata["url"] = source_file.replace(f"{DEFAULT_DIRS['CRAWLED_DIR']}/", "") return metadata, content - except Exception as e: - logger.error(f"Error reading markdown file {file_path}: {e}") + except Exception: + logger.exception("Error reading markdown file %s", file_path) return {}, "" def find_markdown_files(directory: str, site_filter: str | None = None) -> list[str]: - """ - Find all markdown files in a directory, optionally filtering by site. + """Find all markdown files in a directory, optionally filtering by site. Args: directory: Directory to search for markdown files @@ -56,34 +54,26 @@ def find_markdown_files(directory: str, site_filter: str | None = None) -> list[ markdown_files = [] try: - for root, _, files in os.walk(directory): - for file in files: - if file.endswith(".md"): - file_path = os.path.join(root, file) - - # Apply site filter if specified - if site_filter: - # Check if the file is in the specified site's directory - try: - # Convert to Path for easier manipulation - from pathlib import Path - - root_path = Path(root) - directory_path = Path(directory) - - # Get relative path from the base directory - relative_path = root_path.relative_to(directory_path) - path_parts = relative_path.parts - - # Check if the first part of the path is the site name - if len(path_parts) > 0 and path_parts[0] == site_filter: - markdown_files.append(file_path) - except ValueError, IndexError: - # Skip files that don't match the site structure - pass - else: + for file_path_obj in Path(directory).rglob("*.md"): + file_path = str(file_path_obj) + + # Apply site filter if specified + if site_filter: + # Check if the file is in the specified site's directory + try: + # Get relative path of the containing directory from the base directory + relative_path = file_path_obj.parent.relative_to(directory) + path_parts = relative_path.parts + + # Check if the first part of the path is the site name + if len(path_parts) > 0 and path_parts[0] == site_filter: markdown_files.append(file_path) - except Exception as e: - logger.error(f"Error finding markdown files: {e}") + except ValueError, IndexError: + # Skip files that don't match the site structure + pass + else: + markdown_files.append(file_path) + except Exception: + logger.exception("Error finding markdown files") return markdown_files diff --git a/tapio/utils/text_utils.py b/tapio/utils/text_utils.py index 2addc2a..0b5b528 100644 --- a/tapio/utils/text_utils.py +++ b/tapio/utils/text_utils.py @@ -11,10 +11,14 @@ RecursiveCharacterTextSplitter, ) +logger = logging.getLogger(__name__) + +# Content shorter than this is treated as too small to be worth chunking +MIN_CHUNKABLE_CONTENT_LENGTH = 100 + def is_pdf_url(url: str) -> bool: - """ - Check if a URL points to a PDF file. + """Check if a URL points to a PDF file. Args: url: URL to check @@ -22,15 +26,8 @@ def is_pdf_url(url: str) -> bool: Returns: True if the URL points to a PDF, False otherwise """ - # Check if URL ends with .pdf (case insensitive) - if url.lower().endswith(".pdf"): - return True - - # Check for PDF in the URL path - if "pdf" in url.split("/")[-1].lower(): - return True - - return False + # Check if URL ends with .pdf (case insensitive), or has "pdf" in the URL path + return url.lower().endswith(".pdf") or "pdf" in url.rsplit("/", maxsplit=1)[-1].lower() def chunk_html_content( @@ -41,8 +38,7 @@ def chunk_html_content( splitter_type: str = "semantic", max_chunks: int = 50, # Add a safety limit to prevent infinite chunking ) -> list[dict[str, Any]]: - """ - Split HTML content into chunks using appropriate LangChain text splitters. + """Split HTML content into chunks using appropriate LangChain text splitters. Args: html_content: HTML content as string @@ -59,8 +55,8 @@ def chunk_html_content( html_content = remove_javascript(html_content) # Sanity check for empty content - if not html_content or len(html_content.strip()) < 100: - logging.warning("Content is too short or empty, not chunking") + if not html_content or len(html_content.strip()) < MIN_CHUNKABLE_CONTENT_LENGTH: + logger.warning("Content is too short or empty, not chunking") return [{"content": html_content.strip(), "metadata": {}}] # Extract plain text for size estimation @@ -69,16 +65,19 @@ def chunk_html_content( # If the content is already small, don't bother chunking if len(plain_text) <= chunk_size: - logging.info( - f"Content size ({len(plain_text)} chars) is smaller than chunk_size ({chunk_size}), skipping chunking", # noqa: E501 + logger.info( + "Content size (%d chars) is smaller than chunk_size (%d), skipping chunking", + len(plain_text), + chunk_size, ) return [{"content": plain_text, "metadata": {}}] # Estimate reasonable number of chunks based on content size estimated_chunks = len(plain_text) // (chunk_size - chunk_overlap) + 1 if estimated_chunks > max_chunks: - logging.warning( - f"Content would generate too many chunks ({estimated_chunks}). Using simpler chunking method.", # noqa: E501 + logger.warning( + "Content would generate too many chunks (%d). Using simpler chunking method.", + estimated_chunks, ) # Fall back to simple text splitting for very large content return _chunk_text_safely(plain_text, chunk_size, chunk_overlap, max_chunks) @@ -91,7 +90,7 @@ def chunk_html_content( try: if splitter_type == "header": # Use header-based chunking - logging.info("Using header-based HTML chunking") + logger.info("Using header-based HTML chunking") headers_to_split_on = [ ("h1", "Header 1"), ("h2", "Header 2"), @@ -104,7 +103,7 @@ def chunk_html_content( elif splitter_type == "section": # Use section-based chunking - logging.info("Using section-based HTML chunking") + logger.info("Using section-based HTML chunking") headers_to_split_on = [ ("h1", "Header 1"), ("h2", "Header 2"), @@ -113,12 +112,12 @@ def chunk_html_content( ("h5", "Header 5"), ] # Using HTMLSectionSplitter but var type should match the interface - section_splitter: HTMLHeaderTextSplitter = HTMLSectionSplitter(headers_to_split_on) # type: ignore + section_splitter: HTMLHeaderTextSplitter = HTMLSectionSplitter(headers_to_split_on) # type: ignore[assignment] split_docs = section_splitter.split_text(html_content) else: # For semantic chunking, try simpler approach first for better reliability - logging.info("Using recursive character-based text chunking for HTML") + logger.info("Using recursive character-based text chunking for HTML") # Extract text and chunk it, preserving some basic HTML structure cleaned_html = _basic_clean_html(html_content) text_splitter = RecursiveCharacterTextSplitter( @@ -130,25 +129,24 @@ def chunk_html_content( # Apply safety checks if len(split_docs) > max_chunks: - logging.warning( - f"HTML splitting produced too many chunks ({len(split_docs)}). Limiting to {max_chunks}.", # noqa: E501 + logger.warning( + "HTML splitting produced too many chunks (%d). Limiting to %d.", + len(split_docs), + max_chunks, ) split_docs = split_docs[:max_chunks] # Convert to our expected format return [{"content": doc.page_content, "metadata": doc.metadata} for doc in split_docs] - except Exception as e: - logging.warning( - f"Error using HTML splitter: {str(e)}. Falling back to default chunker.", - ) + except Exception: + logger.warning("Error using HTML splitter. Falling back to default chunker.", exc_info=True) # Fallback to basic text splitting return _chunk_text_safely(plain_text, chunk_size, chunk_overlap, max_chunks) def remove_javascript(html_content: str) -> str: - """ - Aggressively remove all JavaScript code from HTML. + """Aggressively remove all JavaScript code from HTML. Args: html_content: HTML content as string @@ -168,9 +166,7 @@ def remove_javascript(html_content: str) -> str: cleaned = re.sub(r"href='javascript:[^']*'", "href='#'", cleaned) # Remove inline JS that might have been missed - cleaned = re.sub(r"(\s)javascript:", r"\1", cleaned) - - return cleaned + return re.sub(r"(\s)javascript:", r"\1", cleaned) def _chunk_text_safely( @@ -179,7 +175,7 @@ def _chunk_text_safely( chunk_overlap: int = 200, max_chunks: int = 50, ) -> list[dict[str, Any]]: - """Safe text chunking with limits to prevent infinite loops""" + """Safe text chunking with limits to prevent infinite loops.""" text_splitter = RecursiveCharacterTextSplitter( chunk_size=chunk_size, chunk_overlap=chunk_overlap, @@ -191,14 +187,16 @@ def _chunk_text_safely( # Safety check for too many chunks if len(docs) > max_chunks: - logging.warning( - f"Generated too many chunks ({len(docs)}). Limiting to {max_chunks}.", + logger.warning( + "Generated too many chunks (%d). Limiting to %d.", + len(docs), + max_chunks, ) docs = docs[:max_chunks] return [{"content": doc.page_content, "metadata": {}} for doc in docs] - except Exception as e: - logging.error(f"Error chunking text: {str(e)}") + except Exception: + logger.exception("Error chunking text") # Last resort: manual chunking chunks = [] for i in range(0, len(text), chunk_size - chunk_overlap): @@ -210,9 +208,9 @@ def _chunk_text_safely( def _basic_clean_html(html_content: str) -> str: - """ - Perform basic HTML cleaning to make text chunking more reliable - while preserving important structural elements + """Perform basic HTML cleaning to make text chunking more reliable. + + Preserves important structural elements. """ # Remove script and style tags with their content cleaned = re.sub(r"]*>.*?", "", html_content, flags=re.DOTALL) diff --git a/tapio/vectorstore/chroma_store.py b/tapio/vectorstore/chroma_store.py index d6371ae..2184a00 100644 --- a/tapio/vectorstore/chroma_store.py +++ b/tapio/vectorstore/chroma_store.py @@ -3,7 +3,6 @@ import logging from typing import Any -from chromadb import GetResult, QueryResult # type: ignore[import-not-found] from langchain_chroma import Chroma # type: ignore[import-not-found] from langchain_core.documents import Document # type: ignore[import-not-found] from langchain_core.embeddings import Embeddings # type: ignore[import-not-found] @@ -49,23 +48,20 @@ def __init__( persist_directory=persist_directory, ) - logger.debug(f"Initialized ChromaStore with collection: {collection_name}") + logger.debug("Initialized ChromaStore with collection: %s", collection_name) def add_document( self, document_id: str, - embedding: list[float] | None = None, metadata: dict[str, Any] | None = None, ) -> None: - """ - Add a document to the vector store. + """Add a document to the vector store. This method is maintained for backward compatibility but uses the langchain Chroma implementation internally. Args: document_id: Unique identifier for the document - embedding: Optional pre-computed embedding vector metadata: Document metadata """ try: @@ -82,7 +78,7 @@ def add_document( # Ensure we have some text content if not document_text: - logger.warning(f"No content found for document {document_id}") + logger.warning("No content found for document %s", document_id) document_text = f"Empty document: {document_id}" # Create document dictionary with IDs @@ -93,15 +89,14 @@ def add_document( ids=[document_id], ) - logger.debug(f"Added document {document_id} to vector store") + logger.debug("Added document %s to vector store", document_id) - except Exception as e: - logger.error(f"Failed to add document {document_id}: {e}") + except Exception: + logger.exception("Failed to add document %s", document_id) raise def query(self, query_text: str, n_results: int = 5) -> list[Document]: - """ - Query the vector store by text. + """Query the vector store by text. Args: query_text: Text to search for @@ -116,55 +111,43 @@ def query(self, query_text: str, n_results: int = 5) -> list[Document]: # Enhance results with citation information for doc in results: self._enhance_document_with_citation(doc) - - return results - except Exception as e: - logger.error(f"Failed to query vector store: {e}") + except Exception: + logger.exception("Failed to query vector store") return [] + else: + return results def query_with_embedding( self, embedding: list[float], n_results: int = 5, - ) -> QueryResult | None: - """ - Query the vector store by embedding. + ) -> list[tuple[Document, float]]: + """Query the vector store by embedding. Args: embedding: Embedding vector to search with n_results: Number of results to return Returns: - List of documents most similar to the query + List of (document, relevance score) pairs most similar to the query """ try: - # Use the underlying Chroma client for this more specialized query - collection = self.vector_db._collection - results = collection.query( - query_embeddings=[embedding], # type: ignore - n_results=n_results, - include=["documents", "metadatas", "distances"], # type: ignore + results = self.vector_db.similarity_search_by_vector_with_relevance_scores( + embedding, + k=n_results, ) - # Add source URLs to metadata if available - if results and "metadatas" in results and results.get("metadatas"): - metadatas = results["metadatas"] - if metadatas and len(metadatas) > 0: - for metadata in metadatas[0]: - if isinstance(metadata, dict): - if "source_url" in metadata: - metadata["citation_url"] = metadata["source_url"] # type: ignore - elif "url" in metadata: - metadata["citation_url"] = metadata["url"] # type: ignore - + # Enhance results with citation information + for doc, _score in results: + self._enhance_document_with_citation(doc) + except Exception: + logger.exception("Failed to query vector store with embedding") + return [] + else: return results - except Exception as e: - logger.error(f"Failed to query vector store with embedding: {e}") - return None - def get_document(self, document_id: str) -> GetResult | None: - """ - Get a document by ID. + def get_document(self, document_id: str) -> dict[str, Any] | None: + """Get a document by ID. Args: document_id: ID of the document to retrieve @@ -173,11 +156,9 @@ def get_document(self, document_id: str) -> GetResult | None: The document if found """ try: - # Use the underlying Chroma collection - collection = self.vector_db._collection - result = collection.get( + result = self.vector_db.get( ids=[document_id], - include=["documents", "metadatas"], # type: ignore + include=["documents", "metadatas"], ) # Add citation information @@ -185,18 +166,18 @@ def get_document(self, document_id: str) -> GetResult | None: for metadata in result["metadatas"]: if isinstance(metadata, dict): if "source_url" in metadata: - metadata["citation_url"] = metadata["source_url"] # type: ignore + metadata["citation_url"] = metadata["source_url"] elif "url" in metadata: - metadata["citation_url"] = metadata["url"] # type: ignore + metadata["citation_url"] = metadata["url"] - return result - except Exception as e: - logger.error(f"Failed to get document {document_id}: {e}") + except Exception: + logger.exception("Failed to get document %s", document_id) return None + else: + return result def _enhance_document_with_citation(self, doc: Any) -> None: - """ - Enhance a document with citation information. + """Enhance a document with citation information. Args: doc: LangChain document object to enhance diff --git a/tapio/vectorstore/vectorizer.py b/tapio/vectorstore/vectorizer.py index 889af08..f0698f2 100644 --- a/tapio/vectorstore/vectorizer.py +++ b/tapio/vectorstore/vectorizer.py @@ -1,7 +1,7 @@ """Vectorize markdown content into ChromaDB using LangChain components.""" import logging -import os +from pathlib import Path from typing import Any from langchain_chroma import Chroma # type: ignore[import-not-found] @@ -57,8 +57,7 @@ def process_directory( site_filter: str | None = None, batch_size: int = 20, ) -> int: - """ - Process all markdown files in a directory. + """Process all markdown files in a directory. Args: input_dir: Directory containing markdown files @@ -72,7 +71,7 @@ def process_directory( markdown_files = find_markdown_files(input_dir, site_filter) total_files = len(markdown_files) - logger.info(f"Found {total_files} markdown files to process") + logger.info("Found %d markdown files to process", total_files) # Process files in batches processed_count = 0 @@ -83,14 +82,16 @@ def process_directory( processed_count += len(batch) chunk_count += new_chunks logger.info( - f"Processed {processed_count}/{total_files} files ({chunk_count} chunks)", + "Processed %d/%d files (%d chunks)", + processed_count, + total_files, + chunk_count, ) return processed_count def _process_batch(self, file_paths: list[str]) -> int: - """ - Process a batch of markdown files. + """Process a batch of markdown files. Args: file_paths: List of paths to markdown files @@ -106,7 +107,7 @@ def _process_batch(self, file_paths: list[str]) -> int: metadata, content = read_markdown_file(file_path) if not content: - logger.warning(f"Empty content in {file_path}") + logger.warning("Empty content in %s", file_path) continue # Create a LangChain Document with metadata @@ -126,11 +127,12 @@ def _process_batch(self, file_paths: list[str]) -> int: all_documents.extend(chunks) logger.debug( - f"Added document {os.path.basename(file_path)} with embeddings", + "Added document %s with embeddings", + Path(file_path).name, ) - except Exception as e: - logger.error(f"Error processing file {file_path}: {e}") + except Exception: + logger.exception("Error processing file %s", file_path) # Add all documents to the vector store if all_documents: @@ -143,8 +145,7 @@ def _prepare_metadata( metadata: dict[str, Any], file_path: str, ) -> dict[str, Any]: - """ - Prepare metadata for the document. + """Prepare metadata for the document. Args: metadata: Original metadata from the markdown file @@ -154,7 +155,7 @@ def _prepare_metadata( Enhanced metadata dictionary """ # Extract document ID from filename - doc_id = os.path.splitext(os.path.basename(file_path))[0] + doc_id = Path(file_path).stem # Start with the metadata from the markdown frontmatter enriched_metadata = metadata.copy() @@ -162,7 +163,7 @@ def _prepare_metadata( # Add additional useful metadata enriched_metadata["source_id"] = doc_id enriched_metadata["source_path"] = file_path - enriched_metadata["file_name"] = os.path.basename(file_path) + enriched_metadata["file_name"] = Path(file_path).name # Ensure source URL is preserved for citation purposes if "source_url" in metadata: @@ -182,8 +183,7 @@ def _prepare_metadata( return enriched_metadata def process_file(self, file_path: str) -> int: - """ - Process a single markdown file. + """Process a single markdown file. Args: file_path: Path to markdown file @@ -196,7 +196,7 @@ def process_file(self, file_path: str) -> int: metadata, content = read_markdown_file(file_path) if not content: - logger.warning(f"Empty content in {file_path}") + logger.warning("Empty content in %s", file_path) return 0 # Create a LangChain Document @@ -218,11 +218,12 @@ def process_file(self, file_path: str) -> int: # No need to explicitly persist as ChromaDB 0.4.x+ automatically persists documents logger.debug( - f"Added document {os.path.basename(file_path)} with embeddings", + "Added document %s with embeddings", + Path(file_path).name, ) return len(chunks) - except Exception as e: - logger.error(f"Error processing file {file_path}: {e}") + except Exception: + logger.exception("Error processing file %s", file_path) return 0 diff --git a/tests/config/test_config_manager.py b/tests/config/test_config_manager.py index 920d586..24df6d2 100644 --- a/tests/config/test_config_manager.py +++ b/tests/config/test_config_manager.py @@ -89,7 +89,7 @@ def invalid_url_config_yaml(self): def test_init_default_path(self, basic_config_yaml): """Test initialization with default config path.""" with patch( - "tapio.config.config_manager.open", + "pathlib.Path.open", mock_open(read_data=basic_config_yaml), ) as mock_file: config_manager = ConfigManager() @@ -116,9 +116,9 @@ def test_init_custom_path(self, custom_site_config_yaml): """Test initialization with custom config path.""" test_config_path = "/path/to/custom/config.yaml" - with patch("tapio.config.config_manager.open", mock_open(read_data=custom_site_config_yaml)) as mock_file: + with patch("pathlib.Path.open", mock_open(read_data=custom_site_config_yaml)) as mock_file: config_manager = ConfigManager(config_path=test_config_path) - mock_file.assert_called_with(test_config_path, encoding="utf-8") + mock_file.assert_called_with(encoding="utf-8") # Test the loaded site data assert "custom_site" in config_manager.list_available_sites() @@ -127,34 +127,34 @@ def test_from_file_class_method(self, basic_config_yaml): """Test the from_file class method.""" test_config_path = "/path/to/custom/config.yaml" - with patch("tapio.config.config_manager.open", mock_open(read_data=basic_config_yaml)): + with patch("pathlib.Path.open", mock_open(read_data=basic_config_yaml)): config_manager = ConfigManager.from_file(test_config_path) assert isinstance(config_manager, ConfigManager) assert "test_site" in config_manager.list_available_sites() def test_file_not_found(self): """Test handling of non-existent configuration file.""" - with patch("tapio.config.config_manager.open", side_effect=FileNotFoundError()): - with pytest.raises(FileNotFoundError): - ConfigManager(config_path="nonexistent_file.yaml") + with patch("pathlib.Path.open", side_effect=FileNotFoundError()), pytest.raises(FileNotFoundError): + ConfigManager(config_path="nonexistent_file.yaml") def test_invalid_yaml(self): """Test handling of invalid YAML file.""" - with patch("tapio.config.config_manager.open", mock_open(read_data=": invalid: yaml: content")): - with patch("yaml.safe_load", side_effect=yaml.YAMLError("Invalid YAML")): - with pytest.raises(yaml.YAMLError): - ConfigManager(config_path="invalid_yaml.yaml") + with ( + patch("pathlib.Path.open", mock_open(read_data=": invalid: yaml: content")), + patch("yaml.safe_load", side_effect=yaml.YAMLError("Invalid YAML")), + pytest.raises(yaml.YAMLError), + ): + ConfigManager(config_path="invalid_yaml.yaml") def test_invalid_config_structure(self): """Test handling of invalid configuration structure.""" - with patch("tapio.config.config_manager.open", mock_open(read_data="not_sites: {}")): - with pytest.raises(ValidationError): - ConfigManager(config_path="invalid_structure.yaml") + with patch("pathlib.Path.open", mock_open(read_data="not_sites: {}")), pytest.raises(ValidationError): + ConfigManager(config_path="invalid_structure.yaml") def test_get_site_config(self, basic_config_yaml): """Test retrieving a specific site configuration.""" with patch( - "tapio.config.config_manager.open", + "pathlib.Path.open", mock_open(read_data=basic_config_yaml), ): config_manager = ConfigManager() @@ -166,7 +166,7 @@ def test_get_site_config(self, basic_config_yaml): def test_get_nonexistent_site_config(self, basic_config_yaml): """Test retrieving a non-existent site configuration.""" with patch( - "tapio.config.config_manager.open", + "pathlib.Path.open", mock_open(read_data=basic_config_yaml), ): config_manager = ConfigManager() @@ -175,17 +175,16 @@ def test_get_nonexistent_site_config(self, basic_config_yaml): def test_get_site_with_invalid_url(self, invalid_url_config_yaml): """Test retrieving site configuration with invalid base_url.""" - with patch( - "tapio.config.config_manager.open", - mock_open(read_data=invalid_url_config_yaml), + # Now the validation happens at model creation time via Pydantic + with ( + patch("pathlib.Path.open", mock_open(read_data=invalid_url_config_yaml)), + pytest.raises(ValidationError), ): - # Now the validation happens at model creation time via Pydantic - with pytest.raises(ValidationError): - _ = ConfigManager() + _ = ConfigManager() def test_list_available_sites(self, multi_site_config_yaml): """Test listing all available site configurations.""" - with patch("tapio.config.config_manager.open", mock_open(read_data=multi_site_config_yaml)): + with patch("pathlib.Path.open", mock_open(read_data=multi_site_config_yaml)): config_manager = ConfigManager() available_sites = config_manager.list_available_sites() assert len(available_sites) == 3 @@ -195,7 +194,7 @@ def test_list_available_sites(self, multi_site_config_yaml): def test_get_site_descriptions(self, site_with_descriptions_yaml): """Test getting descriptions for all site configurations.""" - with patch("tapio.config.config_manager.open", mock_open(read_data=site_with_descriptions_yaml)): + with patch("pathlib.Path.open", mock_open(read_data=site_with_descriptions_yaml)): config_manager = ConfigManager() site_descriptions = config_manager.get_site_descriptions() diff --git a/tests/crawler/test_crawler.py b/tests/crawler/test_crawler.py index ba8faa9..341477f 100644 --- a/tests/crawler/test_crawler.py +++ b/tests/crawler/test_crawler.py @@ -160,10 +160,11 @@ def test_save_url_mappings(self): }, } - with patch("builtins.open", mock_open()) as mock_file: + with patch("pathlib.Path.open", mock_open()) as mock_file: crawler._save_url_mappings() expected_path = os.path.join(crawler.output_dir, "url_mappings.json") - mock_file.assert_called_once_with(expected_path, "w", encoding="utf-8") + assert crawler.mapping_file == expected_path + mock_file.assert_called_once_with("w", encoding="utf-8") def test_save_url_mappings_exception(self): """Test handling exceptions when saving URL mappings.""" @@ -179,11 +180,11 @@ def test_save_url_mappings_exception(self): } with ( - patch("builtins.open", side_effect=Exception("Test error")), - patch("logging.error") as mock_log, + patch("pathlib.Path.open", side_effect=Exception("Test error")), + patch("tapio.crawler.crawler.logger.exception") as mock_log, ): crawler._save_url_mappings() - mock_log.assert_called_once_with("Error saving URL mappings: Test error") + mock_log.assert_called_once_with("Error saving URL mappings") @pytest.mark.asyncio async def test_crawl_url_success(self): @@ -245,7 +246,7 @@ async def test_crawl_url_http_error(self): crawler._semaphore = mock_semaphore results = [] - with patch("logging.warning") as mock_log: + with patch("tapio.crawler.crawler.logger.warning") as mock_log: await crawler._crawl_url(mock_client, "https://example.com/404", 0, results) mock_log.assert_called() @@ -586,18 +587,20 @@ async def test_crawl_full_integration(self): mock_client_context.__aenter__ = AsyncMock(return_value=mock_client) mock_client_context.__aexit__ = AsyncMock(return_value=None) - with patch("httpx.AsyncClient", return_value=mock_client_context): - with patch.object(crawler, "_save_html_content"): - # Mock the _semaphore attribute to avoid async context issues - mock_semaphore = AsyncMock() - mock_semaphore.__aenter__ = AsyncMock(return_value=None) - mock_semaphore.__aexit__ = AsyncMock(return_value=None) - crawler._semaphore = mock_semaphore + with ( + patch("httpx.AsyncClient", return_value=mock_client_context), + patch.object(crawler, "_save_html_content"), + ): + # Mock the _semaphore attribute to avoid async context issues + mock_semaphore = AsyncMock() + mock_semaphore.__aenter__ = AsyncMock(return_value=None) + mock_semaphore.__aexit__ = AsyncMock(return_value=None) + crawler._semaphore = mock_semaphore - results = await crawler.crawl() + results = await crawler.crawl() - assert len(results) > 0 - assert results[0]["url"] == "https://example.com/" # URLs are normalized + assert len(results) > 0 + assert results[0]["url"] == "https://example.com/" # URLs are normalized def test_get_file_path_from_url_path_traversal_protection(self): """Test that path traversal attacks are prevented.""" diff --git a/tests/parser/test_parser.py b/tests/parser/test_parser.py index a0a6054..04775fc 100644 --- a/tests/parser/test_parser.py +++ b/tests/parser/test_parser.py @@ -6,6 +6,7 @@ import unittest from unittest.mock import MagicMock +import pytest import yaml from tapio.config.config_manager import ConfigManager @@ -188,7 +189,7 @@ def test_init(self): def test_init_with_invalid_site(self): """Test initialization with invalid site.""" config_manager = ConfigManager(self.config_path) - with self.assertRaises(ValueError): + with pytest.raises(ValueError, match="nonexistent"): config_manager.get_site_config("nonexistent") def test_parse_html_with_main_content(self): diff --git a/tests/parser/test_relative_links.py b/tests/parser/test_relative_links.py index 8f4ef81..c284075 100644 --- a/tests/parser/test_relative_links.py +++ b/tests/parser/test_relative_links.py @@ -218,14 +218,6 @@ def test_domain_specific_url_handling(self): # Parse the file result = parser.parse_file(domain_file_path) - # Debug: If result is None, print file path and parser input_dir for troubleshooting - if result is None: - print(f"parse_file returned None for {domain_file_path}") - print(f"parser.input_dir: {parser.input_dir}") - print(f"File exists: {os.path.exists(domain_file_path)}") - print(f"Files in domain dir: {os.listdir(os.path.dirname(domain_file_path))}") - print(f"parser.config: {parser.config}") - return # Stop test here to avoid further errors self.assertIsNotNone(result, f"parse_file returned None for {domain_file_path}") self.assertIsNotNone(parser.current_base_url, "current_base_url is None after parsing") self.assertTrue(parser.current_base_url and parser.current_base_url.startswith(f"https://{self.domain}")) diff --git a/tests/prompts/test_prompt_loader.py b/tests/prompts/test_prompt_loader.py index 9aa8dc4..80f7f98 100644 --- a/tests/prompts/test_prompt_loader.py +++ b/tests/prompts/test_prompt_loader.py @@ -71,14 +71,16 @@ def test_load_prompt_without_variables(): def test_load_nonexistent_prompt(): """Test loading a nonexistent prompt file returns empty string.""" - with mock.patch("os.path.exists", return_value=False): + with mock.patch("pathlib.Path.exists", return_value=False): result = load_prompt("nonexistent_prompt") assert result == "" def test_load_prompt_file_error(): """Test handling of file errors when loading prompt.""" - with mock.patch("os.path.exists", return_value=True): - with mock.patch("builtins.open", side_effect=OSError("Mock error")): - result = load_prompt("error_prompt") - assert result == "" + with ( + mock.patch("pathlib.Path.exists", return_value=True), + mock.patch("pathlib.Path.open", side_effect=OSError("Mock error")), + ): + result = load_prompt("error_prompt") + assert result == "" diff --git a/tests/services/test_document_retrieval_service.py b/tests/services/test_document_retrieval_service.py index e05ee0b..be486dd 100644 --- a/tests/services/test_document_retrieval_service.py +++ b/tests/services/test_document_retrieval_service.py @@ -11,11 +11,10 @@ def doc_retrieval_service(mock_chroma_store): """Create a document retrieval service with mocked dependencies for testing.""" # Create DocumentRetrievalService with injected mock ChromaStore - service = DocumentRetrievalService( + return DocumentRetrievalService( vector_store=mock_chroma_store, num_results=3, ) - return service def test_document_retrieval_service_retrieves_documents(doc_retrieval_service): diff --git a/tests/services/test_llm_service.py b/tests/services/test_llm_service.py index 6f0a510..d4a5a89 100644 --- a/tests/services/test_llm_service.py +++ b/tests/services/test_llm_service.py @@ -62,7 +62,7 @@ def test_check_model_availability_ollama_not_running(self, mock_list): mock_list.assert_called_once() @pytest.mark.parametrize( - "requested_model,available_models,expected_result,expected_log_message", + ("requested_model", "available_models", "expected_result", "expected_log_message"), [ # Exact matches ( @@ -282,6 +282,51 @@ def test_generate_response_with_system_prompt(self, mock_chat): }, ) + @patch("tapio.services.llm_service.ollama.chat") + def test_generate_response_with_history(self, mock_chat): + """Test response generation includes prior conversation turns.""" + mock_chat.return_value = {"message": {"content": "Sure, following up."}} + + service = LLMService("llama3.2:latest") + history = [ + {"role": "user", "content": "What is a residence permit?"}, + {"role": "assistant", "content": "It's a document allowing you to live in Finland."}, + ] + result = service.generate_response( + prompt="How do I apply for one?", + system_prompt="You are a helpful assistant.", + history=history, + ) + + assert result == "Sure, following up." + mock_chat.assert_called_once_with( + model="llama3.2:latest", + messages=[ + {"role": "system", "content": "You are a helpful assistant."}, + {"role": "user", "content": "What is a residence permit?"}, + {"role": "assistant", "content": "It's a document allowing you to live in Finland."}, + {"role": "user", "content": "How do I apply for one?"}, + ], + options={ + "temperature": 0.7, + "num_predict": 1024, + }, + ) + + @patch("tapio.services.llm_service.ollama.chat") + def test_generate_response_history_is_truncated(self, mock_chat): + """Test that only the most recent MAX_HISTORY_MESSAGES turns are kept.""" + mock_chat.return_value = {"message": {"content": "ok"}} + + service = LLMService("llama3.2:latest") + history = [{"role": "user", "content": f"message {i}"} for i in range(20)] + service.generate_response(prompt="latest question", history=history) + + sent_messages = mock_chat.call_args[1]["messages"] + # All but the final appended user prompt should come from the tail of history + assert sent_messages[:-1] == history[-10:] + assert sent_messages[-1] == {"role": "user", "content": "latest question"} + @patch("tapio.services.llm_service.ollama.chat") def test_generate_response_error(self, mock_chat): """Test response generation when an error occurs.""" diff --git a/tests/test_cli.py b/tests/test_cli.py index 38288a8..78d2fb6 100644 --- a/tests/test_cli.py +++ b/tests/test_cli.py @@ -2,6 +2,7 @@ import os import tempfile +from pathlib import Path from unittest.mock import MagicMock, patch import pytest @@ -450,15 +451,15 @@ def test_list_sites_command_exception(self, mock_config_manager, runner): @patch("tapio.cli.ConfigManager") @patch("tapio.cli.Parser") - @patch("os.path.exists") - @patch("os.listdir") - @patch("os.path.isdir") - @patch("os.walk") + @patch("pathlib.Path.exists", autospec=True) + @patch("pathlib.Path.iterdir", autospec=True) + @patch("pathlib.Path.is_dir", autospec=True) + @patch("pathlib.Path.rglob", autospec=True) def test_parse_command_no_site_specified( self, - mock_walk, - mock_isdir, - mock_listdir, + mock_rglob, + mock_is_dir, + mock_iterdir, mock_exists, mock_parser, mock_config_manager, @@ -466,23 +467,22 @@ def test_parse_command_no_site_specified( ): """Test the parse command when no site is specified - should parse all available sites with crawled content.""" # Setup mocks for directory structure - new structure uses content/site_name/crawled/ - mock_exists.side_effect = lambda path: ( - path == DEFAULT_CONTENT_DIR or "migri/crawled" in path or "kela/crawled" in path or "vero/crawled" in path - ) - mock_listdir.return_value = ["migri", "kela", "vero", "parsed"] - mock_isdir.side_effect = lambda path: not path.endswith(".json") - - # Mock os.walk to return HTML files for each site's crawled directory - def mock_walk_side_effect(path): - if "migri/crawled" in path: - return [("/content/migri/crawled", [], ["page1.html", "page2.html"])] - elif "kela/crawled" in path: - return [("/content/kela/crawled", [], ["page3.html"])] - elif "vero/crawled" in path: - return [("/content/vero/crawled", [], ["page4.html", "page5.html"])] - return [] - - mock_walk.side_effect = mock_walk_side_effect + mock_exists.return_value = True + mock_iterdir.return_value = [Path("migri"), Path("kela"), Path("vero"), Path("parsed")] + mock_is_dir.side_effect = lambda self: not str(self).endswith(".json") + + # Mock Path.rglob to return HTML files for each site's crawled directory + def mock_rglob_side_effect(self, _pattern): + path_str = str(self) + if "migri/crawled" in path_str: + return iter([Path("page1.html"), Path("page2.html")]) + if "kela/crawled" in path_str: + return iter([Path("page3.html")]) + if "vero/crawled" in path_str: + return iter([Path("page4.html"), Path("page5.html")]) + return iter([]) + + mock_rglob.side_effect = mock_rglob_side_effect # Set up mock parser instances mock_parser_instances = [] @@ -532,7 +532,7 @@ def mock_walk_side_effect(path): assert "Parsed 3 sites: migri, kela, vero" in result.stdout @patch("tapio.cli.ConfigManager") - @patch("os.path.exists") + @patch("pathlib.Path.exists", autospec=True) def test_parse_command_no_site_crawled_dir_not_found(self, mock_exists, mock_config_manager, runner): """Test the parse command when no site is specified and crawled directory doesn't exist.""" # Setup mocks @@ -553,15 +553,15 @@ def test_parse_command_no_site_crawled_dir_not_found(self, mock_exists, mock_con assert f"Content directory not found: {DEFAULT_CONTENT_DIR}" in result.stdout @patch("tapio.cli.ConfigManager") - @patch("os.path.exists") - @patch("os.listdir") - @patch("os.path.isdir") - @patch("os.walk") + @patch("pathlib.Path.exists", autospec=True) + @patch("pathlib.Path.iterdir", autospec=True) + @patch("pathlib.Path.is_dir", autospec=True) + @patch("pathlib.Path.rglob", autospec=True) def test_parse_command_no_site_no_crawled_content( self, - mock_walk, - mock_isdir, - mock_listdir, + mock_rglob, + mock_is_dir, + mock_iterdir, mock_exists, mock_config_manager, runner, @@ -569,11 +569,11 @@ def test_parse_command_no_site_no_crawled_content( """Test the parse command when no site is specified and no crawled content is found.""" # Setup mocks - directory exists but contains no HTML files mock_exists.return_value = True - mock_listdir.return_value = ["url_mappings.json", "empty_dir"] - mock_isdir.side_effect = lambda path: path.endswith("empty_dir") + mock_iterdir.return_value = [Path("url_mappings.json"), Path("empty_dir")] + mock_is_dir.side_effect = lambda self: not str(self).endswith(".json") - # Mock os.walk to return no HTML files - mock_walk.return_value = [("/content/crawled/empty_dir", [], ["text_file.txt"])] + # Mock Path.rglob to return no HTML files + mock_rglob.return_value = iter([]) mock_config_instance = MagicMock() mock_config_instance.list_available_sites.return_value = ["migri", "kela"] @@ -590,36 +590,35 @@ def test_parse_command_no_site_no_crawled_content( assert "No crawled content found to parse" in result.stdout @patch("tapio.cli.ConfigManager") - @patch("os.path.exists") - @patch("os.listdir") - @patch("os.path.isdir") - @patch("os.walk") + @patch("pathlib.Path.exists", autospec=True) + @patch("pathlib.Path.iterdir", autospec=True) + @patch("pathlib.Path.is_dir", autospec=True) + @patch("pathlib.Path.rglob", autospec=True) def test_parse_command_no_site_no_matching_configs( self, - mock_walk, - mock_isdir, - mock_listdir, + mock_rglob, + mock_is_dir, + mock_iterdir, mock_exists, mock_config_manager, runner, ): """Test the parse command when crawled content exists but no site configs match.""" # Setup mocks for new directory structure - content/site_name/crawled/ - mock_exists.side_effect = lambda path: ( - path == DEFAULT_CONTENT_DIR or "unknown_site/crawled" in path or "another_unknown/crawled" in path - ) - mock_listdir.return_value = ["unknown_site", "another_unknown"] - mock_isdir.side_effect = lambda path: not path.endswith(".json") + mock_exists.return_value = True + mock_iterdir.return_value = [Path("unknown_site"), Path("another_unknown")] + mock_is_dir.side_effect = lambda self: not str(self).endswith(".json") - # Mock os.walk to return HTML files for unknown sites - def mock_walk_side_effect(path): - if "unknown_site/crawled" in path: - return [("/content/unknown_site/crawled", [], ["page1.html"])] - elif "another_unknown/crawled" in path: - return [("/content/another_unknown/crawled", [], ["page2.html"])] - return [] + # Mock Path.rglob to return HTML files for unknown sites + def mock_rglob_side_effect(self, _pattern): + path_str = str(self) + if "unknown_site/crawled" in path_str: + return iter([Path("page1.html")]) + if "another_unknown/crawled" in path_str: + return iter([Path("page2.html")]) + return iter([]) - mock_walk.side_effect = mock_walk_side_effect + mock_rglob.side_effect = mock_rglob_side_effect # Set up mock config manager with sites that don't match the crawled sites mock_config_instance = MagicMock() @@ -642,15 +641,15 @@ def mock_walk_side_effect(path): @patch("tapio.cli.ConfigManager") @patch("tapio.cli.Parser") - @patch("os.path.exists") - @patch("os.listdir") - @patch("os.path.isdir") - @patch("os.walk") + @patch("pathlib.Path.exists", autospec=True) + @patch("pathlib.Path.iterdir", autospec=True) + @patch("pathlib.Path.is_dir", autospec=True) + @patch("pathlib.Path.rglob", autospec=True) def test_parse_command_no_site_partial_match( self, - mock_walk, - mock_isdir, - mock_listdir, + mock_rglob, + mock_is_dir, + mock_iterdir, mock_exists, mock_parser, mock_config_manager, @@ -658,26 +657,22 @@ def test_parse_command_no_site_partial_match( ): """Test the parse command when only some crawled sites have matching site configs.""" # Setup mocks for directory structure - new structure uses content/site_name/crawled/ - mock_exists.side_effect = lambda path: ( - path == DEFAULT_CONTENT_DIR - or "migri/crawled" in path - or "unknown/crawled" in path - or "kela/crawled" in path - ) - mock_listdir.return_value = ["migri", "unknown", "kela"] - mock_isdir.side_effect = lambda path: not path.endswith(".json") - - # Mock os.walk to return HTML files - def mock_walk_side_effect(path): - if "migri/crawled" in path: - return [("/content/migri/crawled", [], ["page1.html"])] - elif "kela/crawled" in path: - return [("/content/kela/crawled", [], ["page2.html"])] - elif "unknown/crawled" in path: - return [("/content/unknown/crawled", [], ["page3.html"])] - return [] - - mock_walk.side_effect = mock_walk_side_effect + mock_exists.return_value = True + mock_iterdir.return_value = [Path("migri"), Path("unknown"), Path("kela")] + mock_is_dir.side_effect = lambda self: not str(self).endswith(".json") + + # Mock Path.rglob to return HTML files + def mock_rglob_side_effect(self, _pattern): + path_str = str(self) + if "migri/crawled" in path_str: + return iter([Path("page1.html")]) + if "kela/crawled" in path_str: + return iter([Path("page2.html")]) + if "unknown/crawled" in path_str: + return iter([Path("page3.html")]) + return iter([]) + + mock_rglob.side_effect = mock_rglob_side_effect # Set up mock parser instances for 2 matching sites mock_parser_instances = [] @@ -711,15 +706,15 @@ def mock_walk_side_effect(path): @patch("tapio.cli.ConfigManager") @patch("tapio.cli.Parser") - @patch("os.path.exists") - @patch("os.listdir") - @patch("os.path.isdir") - @patch("os.walk") + @patch("pathlib.Path.exists", autospec=True) + @patch("pathlib.Path.iterdir", autospec=True) + @patch("pathlib.Path.is_dir", autospec=True) + @patch("pathlib.Path.rglob", autospec=True) def test_parse_command_no_site_with_exception( self, - mock_walk, - mock_isdir, - mock_listdir, + mock_rglob, + mock_is_dir, + mock_iterdir, mock_exists, mock_parser, mock_config_manager, @@ -727,16 +722,16 @@ def test_parse_command_no_site_with_exception( ): """Test handling of exceptions in parse command when parsing all sites.""" # Setup mocks for directory structure - new structure uses content/site_name/crawled/ - mock_exists.side_effect = lambda path: path == DEFAULT_CONTENT_DIR or "migri/crawled" in path - mock_listdir.return_value = ["migri"] - mock_isdir.side_effect = lambda path: not path.endswith(".json") + mock_exists.return_value = True + mock_iterdir.return_value = [Path("migri")] + mock_is_dir.side_effect = lambda self: not str(self).endswith(".json") - def mock_walk_side_effect(path): - if "migri/crawled" in path: - return [("/content/migri/crawled", [], ["page.html"])] - return [] + def mock_rglob_side_effect(self, _pattern): + if "migri/crawled" in str(self): + return iter([Path("page.html")]) + return iter([]) - mock_walk.side_effect = mock_walk_side_effect + mock_rglob.side_effect = mock_rglob_side_effect # Set up mock parser that raises an exception mock_parser_instance = MagicMock() @@ -762,8 +757,8 @@ def mock_walk_side_effect(path): @patch("tapio.cli.MarkdownVectorizer") def test_vectorize_command_with_nonexistent_site(self, mock_vectorizer, runner): """Test the vectorize command with a non-existent site.""" - # Mock os.path.exists to return False for the site directory - with patch("tapio.cli.os.path.exists", return_value=False): + # Mock Path.exists to return False for the site directory + with patch("pathlib.Path.exists", return_value=False): # Run the command with non-existent site result = runner.invoke(app, ["vectorize", "nonexistent"]) diff --git a/tests/test_gradio_app.py b/tests/test_gradio_app.py index f13527c..078ea26 100644 --- a/tests/test_gradio_app.py +++ b/tests/test_gradio_app.py @@ -41,6 +41,22 @@ def test_generate_rag_response(self, test_app): assert response == "Test response" assert formatted_docs == "Formatted docs" + def test_respond_stream_passes_prior_history_only(self, test_app): + """Test that respond_stream excludes the just-added current message from history.""" + prior_turns = [ + {"role": "user", "content": "What is a residence permit?"}, + {"role": "assistant", "content": "It's a document allowing you to live in Finland."}, + ] + chat_history = list(prior_turns) + + # Consume the generator to trigger the call to the orchestrator + list(test_app.respond_stream("How do I apply for one?", chat_history)) + + test_app.rag_orchestrator.query_stream.assert_called_once_with( + query_text="How do I apply for one?", + history=prior_turns, + ) + def test_generate_rag_response_with_error(self, test_app): """Test error handling in generate_rag_response.""" # Setup diff --git a/tests/utils/test_markdown_utils.py b/tests/utils/test_markdown_utils.py index dca1f36..d2d563d 100644 --- a/tests/utils/test_markdown_utils.py +++ b/tests/utils/test_markdown_utils.py @@ -21,7 +21,7 @@ def test_read_markdown_file_with_source_url(self): This is test content. """ - with patch("builtins.open", mock_open(read_data=mock_file_content)): + with patch("pathlib.Path.open", mock_open(read_data=mock_file_content)): metadata, content = read_markdown_file("test_file.md") assert metadata["title"] == "Test Document" @@ -39,7 +39,7 @@ def test_read_markdown_file_with_source_file(self): This is test content. """ - with patch("builtins.open", mock_open(read_data=mock_file_content)): + with patch("pathlib.Path.open", mock_open(read_data=mock_file_content)): metadata, content = read_markdown_file("test_file.md") assert metadata["title"] == "Test Document" @@ -49,7 +49,7 @@ def test_read_markdown_file_with_source_file(self): def test_read_markdown_file_error(self): """Test error handling when reading a markdown file.""" - with patch("builtins.open", side_effect=FileNotFoundError("File not found")): + with patch("pathlib.Path.open", side_effect=FileNotFoundError("File not found")): metadata, content = read_markdown_file("non_existent.md") assert metadata == {} @@ -143,7 +143,7 @@ def test_find_markdown_files_with_unparseable_file(self): def test_find_markdown_files_error(self): """Test error handling when finding markdown files.""" - with patch("os.walk", side_effect=PermissionError("Permission denied")): + with patch("pathlib.Path.rglob", side_effect=PermissionError("Permission denied")): markdown_files = find_markdown_files("non_existent_dir") assert markdown_files == [] diff --git a/tests/utils/test_text_utils.py b/tests/utils/test_text_utils.py index a5aa4d4..64a7f2b 100644 --- a/tests/utils/test_text_utils.py +++ b/tests/utils/test_text_utils.py @@ -211,7 +211,7 @@ def test_chunk_text_safely_error(self): # Mock the manual chunking as well to ensure we get results with patch( - "tapio.utils.text_utils.logging.error", + "tapio.utils.text_utils.logger.exception", ) as mock_logging: # Create long enough text to trigger chunking text = "Test content " * 100 diff --git a/tests/vectorstore/test_chroma_store.py b/tests/vectorstore/test_chroma_store.py index 6e94302..c1f5eb5 100644 --- a/tests/vectorstore/test_chroma_store.py +++ b/tests/vectorstore/test_chroma_store.py @@ -3,6 +3,7 @@ from unittest.mock import Mock, patch import pytest +from langchain_core.documents import Document from tapio.vectorstore.chroma_store import ChromaStore @@ -176,14 +177,9 @@ def test_query_exception(self, mock_chroma, mock_embeddings): def test_query_with_embedding(self, mock_chroma, mock_embeddings): """Test querying the vector store with embedding.""" # Set up mocks - mock_collection = Mock() - mock_collection.query.return_value = { - "documents": [["Test content"]], - "metadatas": [[{"source_url": "https://example.com/doc"}]], - "distances": [[0.1]], - } + mock_doc = Document(page_content="Test content", metadata={"source_url": "https://example.com/doc"}) mock_vector_db = Mock() - mock_vector_db._collection = mock_collection + mock_vector_db.similarity_search_by_vector_with_relevance_scores.return_value = [(mock_doc, 0.1)] mock_chroma.return_value = mock_vector_db # Initialize ChromaStore with injected embeddings @@ -196,28 +192,26 @@ def test_query_with_embedding(self, mock_chroma, mock_embeddings): embedding = [0.1, 0.2, 0.3] results = store.query_with_embedding(embedding=embedding, n_results=3) - # Check if query was called with correct arguments - mock_collection.query.assert_called_once_with( - query_embeddings=[embedding], - n_results=3, - include=["documents", "metadatas", "distances"], + # Check if the public similarity search API was called with correct arguments + mock_vector_db.similarity_search_by_vector_with_relevance_scores.assert_called_once_with( + embedding, + k=3, ) # Check if citation URL was added - assert "citation_url" in results["metadatas"][0][0] - assert results["metadatas"][0][0]["citation_url"] == "https://example.com/doc" + doc, score = results[0] + assert doc.metadata["citation_url"] == "https://example.com/doc" + assert score == 0.1 @patch("tapio.vectorstore.chroma_store.Chroma") def test_get_document(self, mock_chroma, mock_embeddings): """Test getting a document by ID.""" # Set up mocks - mock_collection = Mock() - mock_collection.get.return_value = { + mock_vector_db = Mock() + mock_vector_db.get.return_value = { "documents": ["Test content"], "metadatas": [{"url": "https://example.com/doc"}], } - mock_vector_db = Mock() - mock_vector_db._collection = mock_collection mock_chroma.return_value = mock_vector_db # Initialize ChromaStore with injected embeddings @@ -229,8 +223,8 @@ def test_get_document(self, mock_chroma, mock_embeddings): # Test get document result = store.get_document(document_id="test_doc") - # Check if get was called with correct arguments - mock_collection.get.assert_called_once_with( + # Check if the public get API was called with correct arguments + mock_vector_db.get.assert_called_once_with( ids=["test_doc"], include=["documents", "metadatas"], ) diff --git a/tests/vectorstore/test_vectorizer.py b/tests/vectorstore/test_vectorizer.py index a9f9ce3..b3a8ec6 100644 --- a/tests/vectorstore/test_vectorizer.py +++ b/tests/vectorstore/test_vectorizer.py @@ -234,13 +234,8 @@ def test_process_file( # Verify correct number of chunks was returned assert chunk_count == 2 - @patch("tapio.vectorstore.vectorizer.os.path.basename") - @patch("tapio.vectorstore.vectorizer.os.path.splitext") - def test_prepare_metadata(self, mock_splitext, mock_basename): + def test_prepare_metadata(self): """Test preparing metadata for a document.""" - # Set up mocks - mock_basename.return_value = "file.md" - mock_splitext.return_value = ("file", ".md") mock_vector_db = Mock() mock_text_splitter = Mock() diff --git a/uv.lock b/uv.lock index 3afefc3..1eb7435 100644 --- a/uv.lock +++ b/uv.lock @@ -2813,7 +2813,7 @@ requires-dist = [ dev = [ { name = "mypy", specifier = ">=1.15.0" }, { name = "prek", specifier = ">=0.2.3" }, - { name = "pyrefly", specifier = ">=0.17.0" }, + { name = "pyrefly", specifier = ">=1.1.1" }, { name = "pytest", specifier = ">=8.3.5" }, { name = "pytest-asyncio", specifier = ">=1.0.0" }, { name = "pytest-cov", specifier = ">=6.1.1" }, From 4207f2fd5b29be73c837d5797bf77bc63b5a5434 Mon Sep 17 00:00:00 2001 From: Brylie Christopher Oxley Date: Sat, 27 Jun 2026 15:02:02 +0300 Subject: [PATCH 4/7] Run prek pre-commit checks in CI, not just on local commits The previous CI lint steps used `ruff check --fix` and `ruff format`, which mutate files in place instead of failing the build -- a PR with unformatted or lint-violating code would pass CI silently. Since not every contributor runs the local prek hook, replace those steps with `prek run --all-files`, which fails on any finding (including the yaml/json/toml checks, pyupgrade, and trailing-comma hooks that weren't being run in CI at all). mypy and pyrefly stay as separate steps against the project's own already-synced venv, rather than have prek spin up a second, duplicate dependency set just for those two hooks. Co-Authored-By: Claude Sonnet 4.6 --- .github/workflows/ci.yaml | 19 +++++++++++-------- 1 file changed, 11 insertions(+), 8 deletions(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 2c88f11..c1d2658 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -31,16 +31,19 @@ jobs: - name: Install package in development mode run: uv pip install -e . - - name: Lint and format with Ruff - uses: astral-sh/ruff-action@v3 + - name: Cache prek hook environments + uses: actions/cache@v4 with: - version: latest + path: ~/.cache/prek + key: prek-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }} - - name: Run Ruff linter with fixes - run: uv run ruff check --fix . - - - name: Run Ruff formatter - run: uv run ruff format . + # Runs the same checks as the local pre-commit hook (yaml/json/toml checks, + # pyupgrade, trailing commas, ruff lint+format, keep-sorted) so CI fails on + # anything a contributor's local hook would have caught. mypy and pyrefly are + # skipped here and run as separate steps below against the project's own venv, + # instead of letting prek build a second, duplicate dependency set for them. + - name: Run pre-commit checks (prek) + run: SKIP=mypy,pyrefly uv run prek run --all-files - name: Run type checking with Mypy run: uv run mypy tapio From c19b70ff6907c6509b74efe197189a140ca0ab0a Mon Sep 17 00:00:00 2001 From: Brylie Christopher Oxley Date: Sat, 27 Jun 2026 15:05:59 +0300 Subject: [PATCH 5/7] Surface CI results in the PR UI instead of requiring log digging Contributors unfamiliar with GitHub Actions shouldn't need to open raw step logs to see what failed. Adds three native GitHub Actions features for in-PR visibility: - Ruff findings now also run with --output-format=github, producing inline annotations on the "Files changed" tab. - Every check (prek, mypy, pyrefly, pytest, coverage) now runs with continue-on-error so a single push surfaces all problems at once, instead of stopping at the first failure and requiring a fix/push/fail cycle to discover the next one. - A job summary step renders a pass/fail table for all checks plus the coverage percentage on the workflow run's Summary tab. - A final gating step explicitly fails the job if any check's outcome wasn't "success", preserving correct CI enforcement despite the continue-on-error used to let every check run independently. Co-Authored-By: Claude Sonnet 4.6 --- .github/workflows/ci.yaml | 50 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index c1d2658..49983b9 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -37,26 +37,47 @@ jobs: path: ~/.cache/prek key: prek-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }} + # Inline annotations on the "Files changed" tab for any lint finding, independent + # of whether prek below also catches it -- this is just for in-PR visibility. + - name: Annotate Ruff findings + if: always() + continue-on-error: true + run: uv run ruff check --output-format=github . + # Runs the same checks as the local pre-commit hook (yaml/json/toml checks, # pyupgrade, trailing commas, ruff lint+format, keep-sorted) so CI fails on # anything a contributor's local hook would have caught. mypy and pyrefly are # skipped here and run as separate steps below against the project's own venv, # instead of letting prek build a second, duplicate dependency set for them. + # continue-on-error lets every check below run even if this one fails, so a + # single push surfaces all problems instead of just the first one encountered; + # the "Fail if any check failed" step at the end still gates the job overall. - name: Run pre-commit checks (prek) + id: prek + continue-on-error: true run: SKIP=mypy,pyrefly uv run prek run --all-files - name: Run type checking with Mypy + id: mypy + continue-on-error: true run: uv run mypy tapio - name: Run Pyrefly code check + id: pyrefly + continue-on-error: true run: uv run pyrefly check - name: Test with pytest and coverage + id: pytest + continue-on-error: true run: uv run pytest --cov=tapio --cov-report=xml --cov-report=term - name: Check coverage threshold + id: coverage + continue-on-error: true run: | coverage_result=$(uv run coverage report | tail -1 | awk '{print $NF}' | sed 's/%//') + echo "coverage_pct=$coverage_result" >> "$GITHUB_OUTPUT" echo "Coverage: $coverage_result%" if (( $(echo "$coverage_result < 80" | bc -l) )); then echo "❌ Coverage threshold not met: $coverage_result% is less than 80%" @@ -65,6 +86,35 @@ jobs: echo "✅ Coverage threshold met: $coverage_result% is greater than or equal to 80%" fi + # Aggregated pass/fail dashboard rendered on the workflow run's Summary tab, + # so contributors don't need to open individual step logs to see what failed. + - name: Write job summary + if: always() + run: | + { + echo "## CI Results" + echo + echo "| Check | Result |" + echo "|-------|--------|" + echo "| prek (lint, format, yaml/json/toml, etc.) | ${{ steps.prek.outcome == 'success' && '✅ Passed' || '❌ Failed' }} |" + echo "| mypy | ${{ steps.mypy.outcome == 'success' && '✅ Passed' || '❌ Failed' }} |" + echo "| pyrefly | ${{ steps.pyrefly.outcome == 'success' && '✅ Passed' || '❌ Failed' }} |" + echo "| pytest | ${{ steps.pytest.outcome == 'success' && '✅ Passed' || '❌ Failed' }} |" + echo "| coverage (≥80%) | ${{ steps.coverage.outcome == 'success' && '✅ Passed' || '❌ Failed' }} (${{ steps.coverage.outputs.coverage_pct }}%) |" + } >> "$GITHUB_STEP_SUMMARY" + + - name: Fail if any check failed + if: always() + run: | + if [ "${{ steps.prek.outcome }}" != "success" ] || \ + [ "${{ steps.mypy.outcome }}" != "success" ] || \ + [ "${{ steps.pyrefly.outcome }}" != "success" ] || \ + [ "${{ steps.pytest.outcome }}" != "success" ] || \ + [ "${{ steps.coverage.outcome }}" != "success" ]; then + echo "One or more checks failed. See the job summary above and the failing step's log for details." + exit 1 + fi + # - name: Upload coverage to Codecov # uses: codecov/codecov-action@v4 # with: From b09d58e2509be80f8f5a58dc3a09d634f1e103c2 Mon Sep 17 00:00:00 2001 From: Brylie Christopher Oxley Date: Sat, 27 Jun 2026 15:12:34 +0300 Subject: [PATCH 6/7] Use pytest.approx for float comparison in test_chroma_store Direct equality comparisons of floats are fragile in general, even though this particular value passes through a mock unchanged. Use the idiomatic pytest.approx instead. --- tests/vectorstore/test_chroma_store.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/vectorstore/test_chroma_store.py b/tests/vectorstore/test_chroma_store.py index c1f5eb5..35a0a2e 100644 --- a/tests/vectorstore/test_chroma_store.py +++ b/tests/vectorstore/test_chroma_store.py @@ -201,7 +201,7 @@ def test_query_with_embedding(self, mock_chroma, mock_embeddings): # Check if citation URL was added doc, score = results[0] assert doc.metadata["citation_url"] == "https://example.com/doc" - assert score == 0.1 + assert score == pytest.approx(0.1) @patch("tapio.vectorstore.chroma_store.Chroma") def test_get_document(self, mock_chroma, mock_embeddings): From fc537951d9beb95bb12dd41bb637f04b66c8851c Mon Sep 17 00:00:00 2001 From: Brylie Christopher Oxley Date: Sat, 27 Jun 2026 15:30:06 +0300 Subject: [PATCH 7/7] Address code review findings: path security, PII logging, CI pinning - crawler.py: fix path-traversal check that used string-prefix matching on resolved paths (abs_full_path.startswith(abs_output_dir)), which a sibling directory sharing the same prefix could bypass. Use Path.is_relative_to() instead. - parser.py: stop replacing every ".html" substring in the output path with str.replace(); strip only the trailing extension via Path.with_suffix(""). - document_retrieval_service.py: stop logging raw user query text at INFO level; log only its length. - text_utils.py: fail fast with ValueError when chunk_overlap >= chunk_size, instead of letting it produce a zero/negative chunking step size downstream. - ci.yaml: pin third-party actions (checkout, setup-uv, cache) to full commit SHAs instead of floating version tags, for supply-chain stability. - README.md: fix awkward grammar in the all-contributors sentence. - .vscode/extensions.json: recommend the Ruff extension, matching the linter this project now standardizes on. Verified and left unchanged (false positives / not actionable): - pyproject.toml per-file-ignores "tests/*": empirically confirmed this already matches nested test files (e.g. tests/config/test_*.py) -- ruff's glob matching for per-file-ignores isn't shell-glob semantics. - markdown_utils.py "except ValueError, IndexError:": valid Python 3.14 syntax (PEP 758 parenthesis-free multi-exception except), not Python 2-style. Confirmed the module imports and the test suite exercises it successfully; this project requires Python >=3.14. - .pre-commit-config.yaml pyupgrade --py313-plus: the pinned pyupgrade version (3.21.2) has no --py314-plus flag yet; --py313-plus is its highest supported target. - test_chroma_store.py float comparison: already fixed in a prior commit (uses pytest.approx). --- .github/workflows/ci.yaml | 6 +++--- .vscode/extensions.json | 3 ++- README.md | 2 +- tapio/crawler/crawler.py | 2 +- tapio/parser/parser.py | 4 ++-- tapio/services/document_retrieval_service.py | 3 ++- tapio/utils/text_utils.py | 4 ++++ 7 files changed, 15 insertions(+), 9 deletions(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 49983b9..e917437 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -17,10 +17,10 @@ jobs: python-version: ["3.14"] steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1 - name: Install uv and set Python version - uses: astral-sh/setup-uv@v5 + uses: astral-sh/setup-uv@d4b2f3b6ecc6e67c4457f6d3e41ec42d3d0fcb86 # v5.4.2 with: enable-cache: true python-version: ${{ matrix.python-version }} @@ -32,7 +32,7 @@ jobs: run: uv pip install -e . - name: Cache prek hook environments - uses: actions/cache@v4 + uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0 with: path: ~/.cache/prek key: prek-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }} diff --git a/.vscode/extensions.json b/.vscode/extensions.json index 08a9ec6..d747643 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -3,6 +3,7 @@ "anthropic.claude-code", "ms-vscode-remote.remote-containers", "github.vscode-pull-request-github", - "ms-python.python" + "ms-python.python", + "charliermarsh.ruff" ] } diff --git a/README.md b/README.md index fee24b8..80864f7 100644 --- a/README.md +++ b/README.md @@ -122,4 +122,4 @@ Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/d -This project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind welcome! +This project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind are welcome! diff --git a/tapio/crawler/crawler.py b/tapio/crawler/crawler.py index 8189761..3574c6c 100644 --- a/tapio/crawler/crawler.py +++ b/tapio/crawler/crawler.py @@ -331,7 +331,7 @@ def _get_file_path_from_url(self, url: str) -> str: # Ensure the path stays within output_dir (security check for path traversal) abs_full_path = full_path.resolve() abs_output_dir = Path(self.output_dir).resolve() - if not str(abs_full_path).startswith(str(abs_output_dir)): + if not abs_full_path.is_relative_to(abs_output_dir): msg = f"Invalid URL results in path outside output directory: {url}" raise ValueError(msg) diff --git a/tapio/parser/parser.py b/tapio/parser/parser.py index 3ff6b28..5320bbe 100644 --- a/tapio/parser/parser.py +++ b/tapio/parser/parser.py @@ -556,8 +556,8 @@ def _get_output_filename(self, html_file_path: Path) -> str: # If there are multiple parts in the path, preserve the structure if len(parts) >= MIN_NESTED_PATH_PARTS: - # Preserve the original directory structure but replace .html extension - return str(rel_path).replace(".html", "") + # Preserve the original directory structure but strip the .html extension + return str(rel_path.with_suffix("")) except ValueError: # If the file is not in the input directory, just use its name return html_file_path.stem diff --git a/tapio/services/document_retrieval_service.py b/tapio/services/document_retrieval_service.py index ac50545..81f2eb1 100644 --- a/tapio/services/document_retrieval_service.py +++ b/tapio/services/document_retrieval_service.py @@ -53,7 +53,8 @@ def retrieve_documents(self, query_text: str) -> list[Any]: List of retrieved documents """ try: - logger.info("Retrieving documents for query: %s", query_text) + # Avoid logging raw query text, which may contain personal information + logger.info("Retrieving documents for query (%d chars)", len(query_text)) retrieved_docs = self.vector_store.query( query_text=query_text, n_results=self.num_results, diff --git a/tapio/utils/text_utils.py b/tapio/utils/text_utils.py index 0b5b528..f2e30f2 100644 --- a/tapio/utils/text_utils.py +++ b/tapio/utils/text_utils.py @@ -51,6 +51,10 @@ def chunk_html_content( Returns: List of dictionaries with chunks and their metadata """ + if chunk_overlap >= chunk_size: + msg = f"chunk_overlap ({chunk_overlap}) must be smaller than chunk_size ({chunk_size})" + raise ValueError(msg) + # First, aggressively remove JavaScript code from HTML html_content = remove_javascript(html_content)