Inquiry About Using PointFISH Model for Spatial Sequencing Data Analysis #1
Description
I am a second-year PhD student working on STARmap (an image-based spatial sequencing technology). I am very interested in the PointFISH model you have developed and would love to learn more about how to utilize it for my research.
Specifically, I am working with input data that includes 3D coordinates of points, as well as masks for cell boundaries and nuclear boundaries generated by Cellpose. I am hoping to use your model to produce a UMAP visualization of the eight patterns you have defined.
Could you please guide me on how to proceed with this? I would greatly appreciate any advice or resources you could share.