diff --git a/test_env.py b/test_env.py index 962297e..5ca2c6a 100644 --- a/test_env.py +++ b/test_env.py @@ -12,7 +12,7 @@ from src.LFBNet.utilities import train_valid_paths from src.LFBNet.preprocessing import preprocessing from src.run import trainer, parse_argument -from src.LFBNet.utilities.compute_surrogate_features import ComputesTMTVsDmaxFromnii +from src.LFBNet.utilities.compute_surrogate_features import ComputesTMTVsDmaxFromNii def main(): @@ -58,7 +58,7 @@ def main(): # If input directory path is not given use the default "/input_data" if input_dir is None: - input_dir = "/input_data" + input_dir = "/input" if not os.path.exists(input_dir): os.mkdir(input_dir) @@ -93,11 +93,11 @@ def main(): print("\n\n Computing the surrogate biomarkers ... \n\n") for identifier, data_path in zip( - ["prd", "gt"], [os.path.join(preprocessing_data_dir, "predicted_data"), + ["predicted", "ground_truth"], [os.path.join(preprocessing_data_dir, "predicted_data"), os.path.join(preprocessing_data_dir, "data_default_MIP_dir")] ): try: - csv_file = ComputesTMTVsDmaxFromnii(data_path=data_path, get_identifier=identifier) + csv_file = ComputesTMTVsDmaxFromNii(data_path=data_path, get_identifier=identifier) csv_file.compute_and_save_surrogate_features() except: continue