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_pkgdown.yml
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url: https://lmjl-alea.github.io/rgudhi/
template:
bootstrap: 5
reference:
- title: Persistence diagram generation
- subtitle: Data structures for cell complexes
- contents:
- CubicalComplex
- PeriodicCubicalComplex
- SimplexTree
- subtitle: Filtrations and reconstructions
- contents:
- AlphaComplex
- RipsComplex
- WitnessComplex
- StrongWitnessComplex
- TangentialComplex
- title: Persistence diagram class
- contents:
- as_persistence_diagram
- is_persistence_diagram
- plot.persistence_diagram
- autoplot.persistence_diagram
- title: Persistence diagram manipulation
- subtitle: Preprocessing
- contents:
- BirthPersistenceTransform
- DiagramScaler
- DiagramSelector
- Padding
- ProminentPoints
- subtitle: Vector representations
- contents:
- Atol
- BettiCurve
- ComplexPolynomial
- Entropy
- Landscape
- PersistenceImage
- Silhouette
- TopologicalVector
- subtitle: Kernel representations
- contents:
- PersistenceFisherKernel
- PersistenceScaleSpaceKernel
- PersistenceWeightedGaussianKernel
- PersistenceSlicedWassersteinKernel
- subtitle: Metrics
- contents:
- BottleneckDistance
- PersistenceFisherDistance
- SlicedWassersteinDistance
- WassersteinDistance
- title: Persistence diagram sample class
- contents:
- as_persistence_diagram_sample
- is_persistence_diagram_sample
- mean.persistence_diagram_sample
- title: Data Scalers
- contents:
- MaxAbsScaler
- MinMaxScaler
- RobustScaler
- StandardScaler
- title: Clustering
- contents:
- AffinityPropagation
- AgglomerativeClustering
- Birch
- DBSCAN
- FeatureAgglomeration
- KMeans
- BisectingKMeans
- MiniBatchKMeans
- MeanShift
- OPTICS
- SpectralClustering
- SpectralBiclustering
- SpectralCoclustering
- Tomato
- title: Data sets
- contents:
- seq_circle
- sphere
- torus
- fetch_bunny
- fetch_spiral_2d
- clear_data_home