From 45af50b4c8b270a6cba9ee52ba75b985e7615dc5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Fahri=20K=C3=BC=C3=A7=C3=BCkali?= Date: Tue, 25 Apr 2023 13:07:22 +0200 Subject: [PATCH] Typo correction for "HapCUT22VCF" on line 81 Typo correction for "HapCUT22VCF" on line 81 to "HapCut2VCF" --- scripts/make_new_vcf.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/make_new_vcf.sh b/scripts/make_new_vcf.sh index d3b107b..ef69d5a 100644 --- a/scripts/make_new_vcf.sh +++ b/scripts/make_new_vcf.sh @@ -78,7 +78,7 @@ NAME="$(basename ${BAM} $(extension ${BAM}))" (set -x; HAPCUT2 --fragments ${NAME}.extractHairs.txt --VCF ${VCF} --output ${NAME}.hapcut.txt --nf 1) -(set -x; python HapCUT22VCF.py ${NAME}.hapcut.txt ${NAME}.vcf ${VCF}) +(set -x; python HapCUT2VCF.py ${NAME}.hapcut.txt ${NAME}.vcf ${VCF}) (set -x; bgzip -c ${NAME}.vcf > ${NAME}.vcf.gz) (set -x; tabix -p vcf ${NAME}.vcf.gz)