diff --git a/ComponentsInitialization.js b/ComponentsInitialization.js
new file mode 100644
index 0000000..9652aa2
--- /dev/null
+++ b/ComponentsInitialization.js
@@ -0,0 +1,68 @@
+define(function (require) {
+    return function (GEPPETTO) {
+        var ReactDOM = require('react-dom');
+        var React = require('react');
+        var getMuiTheme = require('material-ui/styles/getMuiTheme').default;
+        var MuiThemeProvider = require('material-ui/styles/MuiThemeProvider').default;
+        var NetPyNE = require('./NetPyNE').default;
+        var injectTapEventPlugin = require('react-tap-event-plugin');
+
+        var Utils = require('./Utils').default;
+        var Console = require('../../js/components/interface/console/Console');
+        var TabbedDrawer = require('../../js/components/interface/drawer/TabbedDrawer');
+        var PythonConsole = require('../../js/components/interface/pythonConsole/PythonConsole');
+        
+        require('./css/netpyne.less');
+        require('./css/material.less');
+        require('./css/traceback.less');
+
+        injectTapEventPlugin();
+
+        const customTheme = {
+            palette: {
+                primary1Color: '#543a73',
+                primary2Color: '#eb557a',
+                primary3Color: '#ebd07a'
+            }
+        };
+        
+        const theme = getMuiTheme(customTheme);
+
+        function App(data = {}) {
+            return (
+                <div>
+                    <MuiThemeProvider muiTheme={theme}>
+                        <NetPyNE {...data}></NetPyNE>
+                    </MuiThemeProvider>
+
+                    <div id="footer">
+                        <div id="footerHeader">
+                            <TabbedDrawer labels={["Console", "Python"]} iconClass={["fa fa-terminal", "fa fa-flask"]} >
+                                <Console />
+                                <PythonConsole pythonNotebookPath={"notebooks/notebook.ipynb"} />
+                            </TabbedDrawer>
+                        </div>
+                    </div>
+                </div>
+            );
+        }
+        ReactDOM.render(<App />, document.querySelector('#mainContainer'));
+
+        GEPPETTO.G.setIdleTimeOut(-1);
+        GEPPETTO.G.debug(false); //Change this to true to see messages on the Geppetto console while loading
+        GEPPETTO.Resources.COLORS.DEFAULT = "#6f54aa";
+        GEPPETTO.trigger(GEPPETTO.Events.Show_spinner, "Initialising NetPyNE");
+
+        GEPPETTO.on('jupyter_geppetto_extension_ready',  (data) => {
+            let project = { id: 1, name: 'Project', experiments: [{ "id": 1, "name": 'Experiment', "status": 'DESIGN' }] }
+            GEPPETTO.Manager.loadProject(project, false);
+            GEPPETTO.Manager.loadExperiment(1, [], []);
+            Utils.execPythonMessage('from netpyne_ui.netpyne_geppetto import netpyne_geppetto');
+            Utils.evalPythonMessage('netpyne_geppetto.getData',[]).then((response) => {
+                var data = Utils.convertToJSON(response)
+                ReactDOM.render(<App data={data} />, document.querySelector('#mainContainer'));
+                GEPPETTO.trigger("spinner:hide");
+            })
+        });
+    };
+});
diff --git a/GeppettoConfiguration.json b/GeppettoConfiguration.json
index 1fddffa..54e3cc2 100644
--- a/GeppettoConfiguration.json
+++ b/GeppettoConfiguration.json
@@ -1,18 +1,22 @@
 {
-  "_README" : "http://docs.geppetto.org/en/latest/build.html",
-  "contextPath": "org.geppetto.frontend",
-  "useSsl": false,
-  "embedded": false,
-  "embedderURL": ["/"],
-  "rootRedirect":"",
-  "noTest": false,
-  "themes": "css/colors",
-  "properties": {
-    "title" : "geppetto",
-    "description": "Geppetto is an open-source platform to build web-based tools to visualize and simulate neuroscience data and models. This is a live deployment to showcase its functionalities.",
-    "type": "website",
-    "url": "http://live.geppetto.org",
-    "icon" :"geppetto/style/favicon.png",
-    "image": "http://www.geppetto.org/images/logo.png"
-  }
-}
\ No newline at end of file
+    "_README" : "http://docs.geppetto.org/en/latest/build.html",
+    "contextPath": "org.geppetto.frontend",
+    "useSsl": false,
+    "embedded": false,
+    "embedderURL": ["/"],
+    "rootRedirect":"",
+    "noTest": false,
+    "extensions": {
+        "geppetto-default/ComponentsInitialization": false,
+        "geppetto-netpyne/ComponentsInitialization": true
+    },
+    "themes": "css/colors",
+    "properties": {
+        "title" : "NetPyNE",
+        "description": "NetPyNE-UI is a user interface for building, visualizing and simulationg neuronal network models using NetPyNE.",
+        "type": "website",
+        "url": "https://github.com/MetaCell/NetPyNE-UI",
+        "icon" :"https://d30y9cdsu7xlg0.cloudfront.net/png/38902-200.png",
+        "image": "http://www.geppetto.org/images/logo.png"
+    }
+}
diff --git a/LICENSE b/LICENSE
deleted file mode 100644
index 80f65a0..0000000
--- a/LICENSE
+++ /dev/null
@@ -1,30 +0,0 @@
-The MIT License (MIT)
-
-Copyright © 2011, 2017 Geppetto authors
-http://geppetto.org
-
-All rights reserved. This program and the accompanying materials
-are made available under the terms of the MIT License
-which accompanies this distribution, and is available at
-http://opensource.org/licenses/MIT
-
-Contributors:
-     Geppetto - http://contributors.geppetto.org
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
-IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
-DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
-OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE
-USE OR OTHER DEALINGS IN THE SOFTWARE.
diff --git a/Main.js b/Main.js
deleted file mode 100644
index ec80a63..0000000
--- a/Main.js
+++ /dev/null
@@ -1,87 +0,0 @@
-global.jQuery = require("jquery");
-global.GEPPETTO_CONFIGURATION = require('./GeppettoConfiguration.json');
-
-jQuery(function () {
-  require('geppetto-client-initialization');
-  var ReactDOM = require('react-dom');
-  var React = require('react');
-  var getMuiTheme = require('@material-ui/core/styles/createMuiTheme').default;
-  var MuiThemeProvider = require('@material-ui/core/styles/MuiThemeProvider').default;
-  var NetPyNE = require('./NetPyNE').default;
-
-
-  var Utils = require('./Utils').default;
-  var Console = require('geppetto-client/js/components/interface/console/Console');
-  var TabbedDrawer = require('geppetto-client/js/components/interface/drawer/TabbedDrawer');
-  var PythonConsole = require('geppetto-client/js/components/interface/pythonConsole/PythonConsole');
-        
-  require('./css/netpyne.less');
-  require('./css/material.less');
-  require('./css/traceback.less');
-
-
-  const customTheme = {
-    palette: {
-      type: 'light',
-      primary: {
-        main: '#543a73',
-        light: '#634587',
-        dark: '#5e4081',
-        contrastText: '#fff'
-      },
-      secondary: {
-        main: '#eb557a',
-        light: '#66d2e2',
-        contrastText: '#fff'
-      },
-      text: {
-        primary: '#333',
-        secondary: '#333'
-      }
-      
-    },
-    typography: {
-      htmlFontSize: 16,
-      fontFamily: ["Roboto", "Helvetica", "Arial", "sans-serif"]
-    }
-  };
-        
-  const theme = getMuiTheme(customTheme);
-
-  function App (data = {}) {
-    return (
-      <div>
-        <MuiThemeProvider theme={theme}>
-          <NetPyNE {...data}></NetPyNE>
-        </MuiThemeProvider>
-
-        <div id="footer">
-          <div id="footerHeader">
-            <TabbedDrawer labels={["Console", "Python"]} iconClass={["fa fa-terminal", "fa fa-flask"]} >
-              <Console />
-              <PythonConsole pythonNotebookPath={"../notebooks/notebook.ipynb"} />
-            </TabbedDrawer>
-          </div>
-        </div>
-      </div>
-    );
-  }
-  ReactDOM.render(<App />, document.querySelector('#mainContainer'));
-
-  GEPPETTO.G.setIdleTimeOut(-1);
-  GEPPETTO.G.debug(false); // Change this to true to see messages on the Geppetto console while loading
-  GEPPETTO.Resources.COLORS.DEFAULT = "#6f54aa";
-  GEPPETTO.trigger(GEPPETTO.Events.Show_spinner, "Initialising NetPyNE");
-
-  GEPPETTO.on('jupyter_geppetto_extension_ready', data => {
-    let project = { id: 1, name: 'Project', experiments: [{ "id": 1, "name": 'Experiment', "status": 'DESIGN' }] }
-    GEPPETTO.Manager.loadProject(project, false);
-    GEPPETTO.Manager.loadExperiment(1, [], []);
-    Utils.execPythonMessage('from netpyne_ui.netpyne_geppetto import netpyne_geppetto');
-    Utils.evalPythonMessage('netpyne_geppetto.getData',[]).then(response => {
-      var data = Utils.convertToJSON(response)
-      ReactDOM.render(<App data={data} />, document.querySelector('#mainContainer'));
-      GEPPETTO.trigger("spinner:hide");
-    })
-  });
-});
\ No newline at end of file
diff --git a/NetPyNE.js b/NetPyNE.js
index 7ab45a4..a401579 100644
--- a/NetPyNE.js
+++ b/NetPyNE.js
@@ -1,9 +1,5 @@
 import React from 'react';
 import Toolbar from '@material-ui/core/Toolbar';
-import { ExpansionPanel, ExpansionPanelSummary, ExpansionPanelDetails } from '@material-ui/core';
-import ExpandMoreIcon from '@material-ui/icons/ExpandMore';
-import Typography from '@material-ui/core/Typography';
-
 import Transition from './components/transition/Transition';
 import NetPyNEPopulations from './components/definition/populations/NetPyNEPopulations';
 import NetPyNECellRules from './components/definition/cellRules/NetPyNECellRules';
@@ -46,7 +42,7 @@ export default class NetPyNE extends React.Component {
     this.handleTabChangedByToolBar = this.handleTabChangedByToolBar.bind(this)
   }
  
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     if (this.props.data != nextProps.data) {
       console.log("Initialising NetPyNE Tabs")
       
@@ -104,11 +100,11 @@ export default class NetPyNE extends React.Component {
       }))
     };
 
-  handleTransitionOptionsChange = (e, v) => {
+  handleTransitionOptionsChange = value => {
     var state = { fastForwardInstantiation: false, fastForwardSimulation: false }
-    if (v == 'Create and Simulate Network') {
+    if (value == 'Create and Simulate Network') {
       state = { fastForwardInstantiation: true, fastForwardSimulation: true }
-    } else if (v == 'Create Network') {
+    } else if (value == 'Create Network') {
       state = { fastForwardInstantiation: true, fastForwardSimulation: false }
     }
     this.setState(state)
@@ -144,7 +140,16 @@ export default class NetPyNE extends React.Component {
       return <div></div>
     } else {
       if (this.state.value == 'define'){
-        var content = this.renderModelConfiguration()
+        var content = <div>
+          <PythonControlledNetPyNEPopulations model={"netParams.popParams"} />
+          <PythonControlledNetPyNECellRules model={"netParams.cellParams"} />
+          <PythonControlledNetPyNESynapses model={"netParams.synMechParams"} />
+          <PythonControlledNetPyNEConnectivity model={"netParams.connParams"} />
+          <PythonControlledNetPyNEStimulationSources model={"netParams.stimSourceParams"} />
+          <PythonControlledNetPyNEStimulationTargets model={"netParams.stimTargetParams"} />
+          <NetPyNESimConfig model={this.state.model.simConfig} />
+          <PythonControlledNetPyNEPlots model={"simConfig.analysis"} />
+        </div>
       } else {
         var content = <NetPyNEInstantiated key={this.state.freezeInstance ? "FIXME" : "PLEASE"} ref={"simulate"} model={this.state.model} page={"simulate"} />
       }
@@ -157,7 +162,10 @@ export default class NetPyNE extends React.Component {
                 <NetPyNEToolBar changeTab={this.handleTabChangedByToolBar} />
               </div>
               <div style={{ display: 'flex', flexFlow: 'rows', width:'100%', marginRight: -10 }}>
-                <NetPyNETabs label={this.state.value} handleChange={this.handleChange} handleTransitionOptionsChange={this.handleTransitionOptionsChange}/>
+                <NetPyNETabs 
+                  label={this.state.value} 
+                  handleChange={this.handleChange} 
+                  handleTransitionOptionsChange={this.handleTransitionOptionsChange}/>
               </div>
             </Toolbar>
           </div>
@@ -178,50 +186,4 @@ export default class NetPyNE extends React.Component {
       )
     }
   }
-
-
-  renderModelConfiguration () {
-    const Expandable = ({ title, subtitle, children }) => <ExpansionPanel key={title} style={{ clear: 'both' }}>
-      <ExpansionPanelSummary
-        id="CellRules"
-        expandIcon={<ExpandMoreIcon />}
-      >
-        <div>
-          <Typography variant="h2">{title}</Typography>
-          <Typography variant="subtitle1">{subtitle}</Typography>
-        </div>
-      </ExpansionPanelSummary>
-      {children}
-    </ExpansionPanel>;
-    
-
-    return <div>
-      <Expandable title="Populations" subtitle="Define here the populations of your network">
-        <PythonControlledNetPyNEPopulations model={"netParams.popParams"} />
-      </Expandable>
-      <Expandable title="Cell rules" subtitle="Define here the rules to set the biophysics and morphology of the cells in your network">
-        <PythonControlledNetPyNECellRules model={"netParams.cellParams"} />
-      </Expandable>
-      <Expandable title="Synaptic mechanisms" subtitle="Define here the synaptic mechanisms available in your network">
-        <PythonControlledNetPyNESynapses model={"netParams.synMechParams"} />
-      </Expandable>
-      <Expandable title="Connectivity rules" subtitle="Define here the rules to generate the connections in your network">
-        <PythonControlledNetPyNEConnectivity model={"netParams.connParams"} />
-      </Expandable>
-      <Expandable title="Stimulation sources" subtitle="Define here the sources of stimulation in your network">
-        <PythonControlledNetPyNEStimulationSources model={"netParams.stimSourceParams"} />
-      </Expandable>
-      <Expandable title="Stimulation target rules" subtitle="Define here the rules to connect stimulation sources to targets in your network">
-        <PythonControlledNetPyNEStimulationTargets model={"netParams.stimTargetParams"} />
-      </Expandable>
-      <Expandable title="Simulation configuration" subtitle="Define here the configuration options for the simulation">
-        <NetPyNESimConfig model={this.state.model.simConfig} />
-      </Expandable> 
-      <Expandable title="Plots configuration" subtitle="Define here the options to customize the plots">
-        <PythonControlledNetPyNEPlots model={"simConfig.analysis"} />
-      </Expandable> 
-
-      
-    </div>;
-  }
 }
diff --git a/PULL_REQUEST_TEMPLATE b/PULL_REQUEST_TEMPLATE
deleted file mode 100644
index f654a60..0000000
--- a/PULL_REQUEST_TEMPLATE
+++ /dev/null
@@ -1,2 +0,0 @@
-- [ ] Add coverage for whatever new functionality, to a JUnit test if it's backend, to a Casper Test if it's frontend
-- [ ] Make sure both push and pr travis builds are passing before asking for a review
diff --git a/Utils.js b/Utils.js
index dbc9eed..2e6bbbd 100644
--- a/Utils.js
+++ b/Utils.js
@@ -132,11 +132,11 @@ const Utils = {
 
   getErrorResponse (data){
     var parsedData = this.convertToJSON(data)
-    if (parsedData['type'] == 'ERROR'){
+    if (parsedData.type && parsedData['type'] == 'ERROR') {
       const error = { details: parsedData['details'] }
-      if (parsedData.message) {
+      if (Object.prototype.hasOwnProperty.call(parsedData, "message")) {
         error["message"] = parsedData['message']
-      } else if (parsedData.websocket) {
+      } else if (Object.prototype.hasOwnProperty.call(parsedData, "websocket")) {
         error["message"] = parsedData['websocket']
       }
       return error
@@ -144,7 +144,6 @@ const Utils = {
     return null;
   },
 
-
   parsePythonException (exception){
     return <pre dangerouslySetInnerHTML={{ __html: IPython.utils.fixConsole(exception) }}></pre>
   },
diff --git a/WEB-INF/shiro.ini b/WEB-INF/shiro.ini
deleted file mode 100644
index ad1c16b..0000000
--- a/WEB-INF/shiro.ini
+++ /dev/null
@@ -1,16 +0,0 @@
-[main]
-
-shiro.loginUrl = /login
-
-cacheManager = org.apache.shiro.cache.MemoryConstrainedCacheManager
-securityManager.cacheManager = $cacheManager
-
-# Configure a Realm to connect to a user datastore.
-myRealm = org.geppetto.frontend.controllers.GeppettoRealm
-
-securityManager.realm = $myRealm
-
-[urls]
-#/logout = logout
-/login = authc
-/simulator = authc
\ No newline at end of file
diff --git a/WEB-INF/spring/app-config.xml b/WEB-INF/spring/app-config.xml
deleted file mode 100644
index a57575c..0000000
--- a/WEB-INF/spring/app-config.xml
+++ /dev/null
@@ -1,105 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<beans xmlns="http://www.springframework.org/schema/beans"
-       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-       xmlns:context="http://www.springframework.org/schema/context"
-       xmlns:mvc="http://www.springframework.org/schema/mvc"
-       xmlns:aop="http://www.springframework.org/schema/aop"
-       xsi:schemaLocation="http://www.springframework.org/schema/beans
-http://www.springframework.org/schema/beans/spring-beans.xsd
-http://www.springframework.org/schema/context
-http://www.springframework.org/schema/context/spring-context.xsd
-http://www.springframework.org/schema/aop
-http://www.springframework.org/schema/aop/spring-aop.xsd
-http://www.springframework.org/schema/mvc
-http://www.springframework.org/schema/mvc/spring-mvc.xsd
-http://www.eclipse.org/gemini/blueprint/schema/blueprint
-http://www.eclipse.org/gemini/blueprint/schema/blueprint/gemini-blueprint.xsd
-http://www.eclipse.org/gemini/blueprint/schema/blueprint-compendium
-http://www.eclipse.org/gemini/blueprint/schema/blueprint-compendium/gemini-blueprint-compendium.xsd">
-
-	<mvc:annotation-driven />
-	
-	<!-- Map static resources to /assets/* url -->
-	<mvc:resources mapping="/geppetto/node_modules/**" location="/node_modules/" order="-1" />
-	<mvc:resources mapping="/geppetto/build/**" location="/build/" order="-1" />
-
-	<mvc:resources mapping="/jsdocs/**" location="/jsdocs/" />
-
-	<mvc:resources mapping="/**" location="/dashboard/" />
-
-	<mvc:resources mapping="/api/**" location="/dashboard/api/" />
-
-	<context:component-scan base-package="org.geppetto.frontend" />
-
-	<bean id="velocityConfig"
-		class="org.springframework.web.servlet.view.velocity.VelocityConfigurer">
-		<property name="resourceLoaderPath">
-			<value>/</value>
-		</property>
-	</bean>
-
-	<bean id="viewResolver"
-		class="org.springframework.web.servlet.view.velocity.VelocityViewResolver">
-		<property name="prefix">
-			<value>/build/</value>
-		</property>
-		<property name="suffix">
-			<value>.vm</value>
-		</property>
-		<property name="exposeSpringMacroHelpers">
-			<value>true</value>
-		</property>
-	</bean>
-
-
-	<!-- Add flag for Simulation Run Mode -->
-	<bean id="config"
-		class="org.geppetto.frontend.controllers.SimulationServerConfig">
-		<property name="serverBehaviorMode" value="MULTIUSER" />
-		<!-- Flags used for observer mode -->
-		<property name="loadedScene" value="#{ null }" />
-		<property name="isSimulationLoaded" value="false" />
-	</bean>
-
-	<bean id="geppettoManager" scope="session"
-		class="org.geppetto.simulation.manager.GeppettoManager">
-		<aop:scoped-proxy />
-	</bean>
-	
-	<bean id="geppettoManagerConfiguration"
-		class="org.geppetto.simulation.GeppettoManagerConfiguration">
-		<property name="allowVolatileProjectsSimulation" value="false" />
-	</bean>
-
-	<!-- Configuration for the default message sender. queuingEnabled: If true 
-		then use worker threads for processing and transmission. If false then do 
-		everything on calling thread. maxQueueSize: The maximum size of a processing 
-		or transmission queue. If the queue is full and discardMessagesIfQueueFull 
-		is true then the oldest item is removed from the queue to make space for 
-		the new item. If discardMessagesIfQueueFull is false then the calling thread 
-		runs the task itself. discardMessagesIfQueueFull: If true and a queue is 
-		full then discard the oldest task to make room for the new task. If false 
-		then run the task in the calling thread. compressionEnabled: If true then 
-		compress messages. minMessageLengthForCompression: The minimum message size 
-		for compression. Messages smaller than this size are not compressed. queuedMessageTypes: 
-		Message types that should be queued - and thus handled across multiple threads. 
-		All other message types are handled on the calling thread. -->
-	<bean id="defaultMessageSenderConfig"
-		class="org.geppetto.frontend.messaging.DefaultMessageSenderFactory">
-
-		<property name="queuingEnabled" value="true" />
-		<property name="maxQueueSize" value="5" />
-		<property name="discardMessagesIfQueueFull" value="false" />
-		<property name="compressionEnabled" value="true" />
-		<property name="minMessageLengthForCompression" value="20000" />
-
-		<!-- <property name="queuedMessageTypes"> <set> <value type="org.geppetto.frontend.messages.OutboundMessages">EXPERIMENT_UPDATE</value> 
-			</set> </property> -->
-
-	</bean>
-
-
-
-
-
-</beans>
diff --git a/WEB-INF/spring/osgi-config.xml b/WEB-INF/spring/osgi-config.xml
deleted file mode 100644
index 48eb0e3..0000000
--- a/WEB-INF/spring/osgi-config.xml
+++ /dev/null
@@ -1,23 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<beans xmlns="http://www.springframework.org/schema/beans"
-       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-       xmlns:context="http://www.springframework.org/schema/context"
-       xmlns:mvc="http://www.springframework.org/schema/mvc"
-       xmlns:aop="http://www.springframework.org/schema/aop"
-       xmlns:osgi="http://www.springframework.org/schema/osgi"
-       xmlns:cm="http://www.eclipse.org/gemini/blueprint/schema/blueprint-compendium"
-       xsi:schemaLocation="http://www.springframework.org/schema/beans
-http://www.springframework.org/schema/beans/spring-beans.xsd
-http://www.springframework.org/schema/osgi
-http://www.springframework.org/schema/osgi/spring-osgi.xsd
-http://www.springframework.org/schema/context
-http://www.springframework.org/schema/context/spring-context.xsd
-http://www.springframework.org/schema/aop
-http://www.springframework.org/schema/aop/spring-aop.xsd
-http://www.springframework.org/schema/mvc
-http://www.springframework.org/schema/mvc/spring-mvc.xsd">
-    
-    <bean id="eventListenerBean" class="org.geppetto.frontend.ApplicationListenerBean" />
-
-	<osgi:reference bean-name="authService" id="AuthService" interface="org.geppetto.core.auth.IAuthService"/>
-</beans>
diff --git a/WEB-INF/web.ejs b/WEB-INF/web.ejs
deleted file mode 100644
index 7643e91..0000000
--- a/WEB-INF/web.ejs
+++ /dev/null
@@ -1,104 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<web-app xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://java.sun.com/xml/ns/javaee"
-         xmlns:web="http://java.sun.com/xml/ns/javaee/web-app_3_0.xsd"
-         xsi:schemaLocation="http://java.sun.com/xml/ns/javaee http://java.sun.com/xml/ns/javaee/web-app_3_0.xsd"
-         id="WebApp_ID" version="3.0">
-
-    <display-name>org.geppetto.frontend</display-name>
-
-    <context-param>
-        <param-name>contextClass</param-name>
-        <param-value>org.eclipse.virgo.web.dm.ServerOsgiBundleXmlWebApplicationContext</param-value>
-    </context-param>
-    <context-param>
-        <param-name>contextConfigLocation</param-name>
-        <param-value>/WEB-INF/spring/*.xml</param-value>
-    </context-param>
-
-    <listener>
-		<listener-class>org.springframework.web.context.request.RequestContextListener</listener-class>
-	</listener>
-    <listener>
-        <listener-class>org.springframework.web.context.ContextLoaderListener</listener-class>
-    </listener>
-    <listener>
-        <listener-class>org.apache.shiro.web.env.EnvironmentLoaderListener</listener-class>
-    </listener>
-
-    <servlet>
-        <servlet-name>springdispatcher</servlet-name>
-        <servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class>
-        <init-param>
-            <param-name>contextClass</param-name>
-            <param-value>org.eclipse.virgo.web.dm.ServerOsgiBundleXmlWebApplicationContext</param-value>
-        </init-param>
-        <init-param>
-            <param-name>contextConfigLocation</param-name>
-            <param-value>/WEB-INF/spring/*.xml</param-value>
-        </init-param>
-        <load-on-startup>1</load-on-startup>
-    </servlet>
-
-    <servlet-mapping>
-        <servlet-name>springdispatcher</servlet-name>
-        <url-pattern>/</url-pattern>
-    </servlet-mapping>
-
-    <mime-mapping>
-   		<extension>json</extension>
-    	<mime-type>application/json</mime-type>
-	</mime-mapping>
-    <servlet>
-        <description></description>
-        <display-name>TestServlet</display-name>
-        <servlet-name>TestServlet</servlet-name>
-        <servlet-class>org.geppetto.frontend.TestServlet</servlet-class>
-    </servlet>
-    <servlet-mapping>
-        <servlet-name>TestServlet</servlet-name>
-        <url-pattern>/TestServlet</url-pattern>
-    </servlet-mapping>
-
-    <filter>
-        <filter-name>ShiroFilter</filter-name>
-        <filter-class>org.apache.shiro.web.servlet.ShiroFilter</filter-class>
-    </filter>
-
-    <filter-mapping>
-        <filter-name>ShiroFilter</filter-name>
-        <url-pattern>/*</url-pattern>
-        <dispatcher>REQUEST</dispatcher>
-        <dispatcher>FORWARD</dispatcher>
-        <dispatcher>INCLUDE</dispatcher>
-        <dispatcher>ERROR</dispatcher>
-    </filter-mapping>
-
-    <% if ((htmlWebpackPlugin.options.GEPPETTO_CONFIGURATION.embedded == true) && (htmlWebpackPlugin.options.GEPPETTO_CONFIGURATION.embedderURL != "/")) { %>
-    <filter>
-	  <filter-name>CorsFilter</filter-name>
-	  <filter-class>org.apache.catalina.filters.CorsFilter</filter-class>
-	  <init-param>
-		<param-name>cors.allowed.origins</param-name>
-		<param-value><%= htmlWebpackPlugin.options.GEPPETTO_CONFIGURATION.embedderURL %></param-value>
-	  </init-param>
-	</filter>
-	<filter-mapping>
-	  <filter-name>CorsFilter</filter-name>
-	  <url-pattern>/*</url-pattern>
-	</filter-mapping>
-	<% } %>
-
-
-    <% if (htmlWebpackPlugin.options.GEPPETTO_CONFIGURATION.useSsl == true) { %>
-    <security-constraint>
-        <web-resource-collection>
-            <web-resource-name>securedapp</web-resource-name>
-            <url-pattern>/*</url-pattern>
-        </web-resource-collection>
-        <user-data-constraint>
-            <transport-guarantee>NONE</transport-guarantee>
-        </user-data-constraint>
-    </security-constraint>
-    <% } %>
-
-</web-app>
diff --git a/WEB-INF/web.xml b/WEB-INF/web.xml
index 0c7a30e..1250132 100644
--- a/WEB-INF/web.xml
+++ b/WEB-INF/web.xml
@@ -1,81 +1,85 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<web-app xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://java.sun.com/xml/ns/javaee"
-         xmlns:web="http://java.sun.com/xml/ns/javaee/web-app_3_0.xsd"
-         xsi:schemaLocation="http://java.sun.com/xml/ns/javaee http://java.sun.com/xml/ns/javaee/web-app_3_0.xsd"
-         id="WebApp_ID" version="3.0">
-
-    <display-name>org.geppetto.frontend</display-name>
-
-    <context-param>
-        <param-name>contextClass</param-name>
-        <param-value>org.eclipse.virgo.web.dm.ServerOsgiBundleXmlWebApplicationContext</param-value>
-    </context-param>
-    <context-param>
-        <param-name>contextConfigLocation</param-name>
-        <param-value>/WEB-INF/spring/*.xml</param-value>
-    </context-param>
-
-    <listener>
-		<listener-class>org.springframework.web.context.request.RequestContextListener</listener-class>
-	</listener>
-    <listener>
-        <listener-class>org.springframework.web.context.ContextLoaderListener</listener-class>
-    </listener>
-    <listener>
-        <listener-class>org.apache.shiro.web.env.EnvironmentLoaderListener</listener-class>
-    </listener>
-
-    <servlet>
-        <servlet-name>springdispatcher</servlet-name>
-        <servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class>
-        <init-param>
-            <param-name>contextClass</param-name>
-            <param-value>org.eclipse.virgo.web.dm.ServerOsgiBundleXmlWebApplicationContext</param-value>
-        </init-param>
-        <init-param>
-            <param-name>contextConfigLocation</param-name>
-            <param-value>/WEB-INF/spring/*.xml</param-value>
-        </init-param>
-        <load-on-startup>1</load-on-startup>
-    </servlet>
-
-    <servlet-mapping>
-        <servlet-name>springdispatcher</servlet-name>
-        <url-pattern>/</url-pattern>
-    </servlet-mapping>
-
-    <mime-mapping>
-   		<extension>json</extension>
-    	<mime-type>application/json</mime-type>
-	</mime-mapping>
-    <servlet>
-        <description></description>
-        <display-name>TestServlet</display-name>
-        <servlet-name>TestServlet</servlet-name>
-        <servlet-class>org.geppetto.frontend.TestServlet</servlet-class>
-    </servlet>
-    <servlet-mapping>
-        <servlet-name>TestServlet</servlet-name>
-        <url-pattern>/TestServlet</url-pattern>
-    </servlet-mapping>
-
-    <filter>
-        <filter-name>ShiroFilter</filter-name>
-        <filter-class>org.apache.shiro.web.servlet.ShiroFilter</filter-class>
-    </filter>
-
-    <filter-mapping>
-        <filter-name>ShiroFilter</filter-name>
-        <url-pattern>/*</url-pattern>
-        <dispatcher>REQUEST</dispatcher>
-        <dispatcher>FORWARD</dispatcher>
-        <dispatcher>INCLUDE</dispatcher>
-        <dispatcher>ERROR</dispatcher>
-    </filter-mapping>
-
-    
-
-
-    
-
-</web-app>
+Html Webpack Plugin:
+<pre>
+  Error: Child compilation failed:
+  Module build failed (from ./node_modules/html-webpack-plugin/lib/loader.js):
+  Error: ENOENT: no such file or directory, open '/home/user/netpyne/webapp/WEB-  INF/web.ejs':
+  Error: ENOENT: no such file or directory, open '/home/user/netpyne/webapp/WEB-  INF/web.ejs'
+  
+  - compiler.js:79 
+    [webapp]/[html-webpack-plugin]/lib/compiler.js:79:16
+  
+  - Compiler.js:339 
+    [webapp]/[webpack]/lib/Compiler.js:339:11
+  
+  - Compiler.js:664 
+    [webapp]/[webpack]/lib/Compiler.js:664:15
+  
+  
+  - Hook.js:154 AsyncSeriesHook.lazyCompileHook
+    [webapp]/[webpack]/[tapable]/lib/Hook.js:154:20
+  
+  - Compiler.js:661 
+    [webapp]/[webpack]/lib/Compiler.js:661:31
+  
+  
+  - Hook.js:154 AsyncSeriesHook.lazyCompileHook
+    [webapp]/[webpack]/[tapable]/lib/Hook.js:154:20
+  
+  - Compilation.js:1395 
+    [webapp]/[webpack]/lib/Compilation.js:1395:35
+  
+  
+  - Hook.js:154 AsyncSeriesHook.lazyCompileHook
+    [webapp]/[webpack]/[tapable]/lib/Hook.js:154:20
+  
+  - Compilation.js:1386 
+    [webapp]/[webpack]/lib/Compilation.js:1386:32
+  
+  
+  - Hook.js:154 AsyncSeriesHook.lazyCompileHook
+    [webapp]/[webpack]/[tapable]/lib/Hook.js:154:20
+  
+  - Compilation.js:1381 
+    [webapp]/[webpack]/lib/Compilation.js:1381:36
+  
+  
+  - Hook.js:154 AsyncSeriesHook.lazyCompileHook
+    [webapp]/[webpack]/[tapable]/lib/Hook.js:154:20
+  
+  - Compilation.js:1377 
+    [webapp]/[webpack]/lib/Compilation.js:1377:32
+  
+  
+  - Hook.js:154 AsyncSeriesHook.lazyCompileHook
+    [webapp]/[webpack]/[tapable]/lib/Hook.js:154:20
+  
+  - Compilation.js:1314 Compilation.seal
+    [webapp]/[webpack]/lib/Compilation.js:1314:27
+  
+  - Compiler.js:658 
+    [webapp]/[webpack]/lib/Compiler.js:658:18
+  
+  - Compilation.js:1234 
+    [webapp]/[webpack]/lib/Compilation.js:1234:4
+  
+  
+  - Hook.js:154 AsyncSeriesHook.lazyCompileHook
+    [webapp]/[webpack]/[tapable]/lib/Hook.js:154:20
+  
+  - Compilation.js:1226 Compilation.finish
+    [webapp]/[webpack]/lib/Compilation.js:1226:28
+  
+  - Compiler.js:655 
+    [webapp]/[webpack]/lib/Compiler.js:655:17
+  
+  
+  - Compilation.js:1158 
+    [webapp]/[webpack]/lib/Compilation.js:1158:12
+  
+  - Compilation.js:1070 
+    [webapp]/[webpack]/lib/Compilation.js:1070:9
+  
+  - task_queues.js:79 processTicksAndRejections
+    internal/process/task_queues.js:79:11
+  
+</pre>
\ No newline at end of file
diff --git a/components/Application.js b/components/Application.js
deleted file mode 100644
index 8153bd6..0000000
--- a/components/Application.js
+++ /dev/null
@@ -1,144 +0,0 @@
-import React, { Component } from 'react';
-import Logo from 'geppetto-client/js/components/interface/logo/Logo';
-import Share from 'geppetto-client/js/components/interface/share/Share';
-import Canvas from 'geppetto-client/js/components/interface/3dCanvas/Canvas';
-import SpotLight from 'geppetto-client/js/components/interface/spotlight/spotlight';
-import LinkButton from 'geppetto-client/js/components/interface/linkButton/LinkButton';
-import TabbedDrawer from 'geppetto-client/js/components/interface/drawer/TabbedDrawer';
-import ControlPanel from 'geppetto-client/js/components/interface/controlPanel/controlpanel';
-import SimulationControls from 'geppetto-client/js/components/interface/simulationControls/ExperimentControls';
-import ForegroundControls from 'geppetto-client/js/components/interface/foregroundControls/ForegroundControls';
-
-const Home = require('geppetto-client/js/components/interface/home/HomeButton');
-const Console = require('geppetto-client/js/components/interface/console/Console');
-const SaveControl = require('geppetto-client/js/components/interface/save/SaveControl');
-const ExperimentsTable = require('geppetto-client/js/components/interface/experimentsTable/ExperimentsTable');
-
-var $ = require('jquery');
-var GEPPETTO = require('geppetto');
-
-require('../css/Application.less');
-
-export default class Application extends Component {
-
-  constructor (props) {
-    super(props);
-
-    this.state = {};
-
-    this.voltage_color = this.voltage_color.bind(this);
-
-    this.passThroughDataFilter = function (entities) {
-      return entities;
-    };
-  }
-
-  voltage_color (x) {
-    x = (x + 0.07) / 0.1; // normalization
-    if (x < 0) {
-      x = 0; 
-    }
-    if (x > 1) {
-      x = 1; 
-    }
-    if (x < 0.25) {
-      return [0, x * 4, 1];
-    } else if (x < 0.5) {
-      return [0, 1, (1 - (x - 0.25) * 4)];
-    } else if (x < 0.75) {
-      return [(x - 0.5) * 4, 1, 0];
-    } else {
-      return [1, (1 - (x - 0.75) * 4), 0];
-    }
-  }
-
-  /* React functions */
-
-  componentWillMount () {
-    window.voltage_color = function (x) {
-      return this.voltage_color(x);
-    }.bind(this);
-  }
-
-  componentDidMount () {
-    GEPPETTO.G.setIdleTimeOut(-1);
-    GEPPETTO.G.enableLocalStorage(false);
-
-    if (this.refs.canvasRef !== undefined) {
-      this.refs.canvasRef.displayAllInstances();
-    }
-
-    if (this.refs.controlPanelRef !== undefined) {
-      this.refs.controlPanelRef.setDataFilter(this.passThroughDataFilter);
-    }
-
-    if (this.refs.spotlightRef !== undefined) {
-      this.refs.spotlightRef.addSuggestion(GEPPETTO.Spotlight.plotSample, GEPPETTO.Resources.PLAY_FLOW);
-    }
-  }
-
-  render () {
-
-    return (
-      <div id='controls' style={{ height: '100%', width: '100%' }}>
-
-        <Logo
-          logo='gpt-gpt_logo'
-          id="geppettologo" />
-
-        <div id="github-logo">
-          <LinkButton
-            left={41}
-            top={390}
-            icon='fa fa-github' 
-            url='https://github.com/openworm/org.geppetto' />
-        </div>
-
-        <div id="HomeButton">
-          <Home />
-        </div>
-
-        <div id="share-button">
-          <Share />
-        </div>
-
-        <div id="SaveButton">
-          <SaveControl />
-        </div>
-
-        <div id="sim-toolbar">
-          <SimulationControls />
-        </div>
-
-        <div id="foreground-toolbar">
-          <ForegroundControls dropDown={false} />
-        </div>
-
-        <div id="sim">
-          <Canvas
-            id="Canvas1"
-            name={"Canvas"}
-            ref="canvasRef" />
-        </div>
-
-        <div id="spotlight" style={{ top: 0 }}>
-          <SpotLight ref="spotlightRef" icon={"styles.Modal"} />
-        </div>
-
-        <div id="controlpanel" style={{ top: 0 }}>
-          <ControlPanel ref="controlPanelRef" icon={"styles.Modal"} enableInfiniteScroll={true}
-            useBuiltInFilters={true} resultsPerPage={10} enablePagination={true} />
-        </div>
-
-        <div id="footer">
-          <div id="footerHeader">
-            <TabbedDrawer labels={["Console", "Experiments"]} iconClass={["fa fa-terminal", "fa fa-flask"]} >
-              <Console />
-              <ExperimentsTable />
-            </TabbedDrawer>
-          </div>
-        </div>
-      </div>
-    );
-  }
-}
diff --git a/components/base/SelectField.js b/components/base/SelectField.js
deleted file mode 100644
index 9b770a6..0000000
--- a/components/base/SelectField.js
+++ /dev/null
@@ -1,31 +0,0 @@
-import React, { Component } from 'react';
-import InputLabel from '@material-ui/core/InputLabel';
-import FormHelperText from '@material-ui/core/FormHelperText';
-import FormControl from '@material-ui/core/FormControl';
-import Select from '@material-ui/core/Select';
-
-export default class SelectField extends Component{
-  constructor (props){
-    super(props);
-  }
-
-  render () {
-    const { id, label, children, ...selectProps } = this.props;
-    return <FormControl>
-      <InputLabel id={id + '-label'}>{label}</InputLabel>
-      <Select
-        labelId={id + '-label'}
-        id={id}
-        error = { !!selectProps.errorText }
-        {...selectProps}
-      >
-        {children}
-      </Select>
-      {
-        selectProps.errorText ? <FormHelperText error> {selectProps.errorText } </FormHelperText> : ''
-      }
-
-    </FormControl>;
-  }
-  
-}
diff --git a/components/definition/cellRules/NetPyNECellRule.js b/components/definition/cellRules/NetPyNECellRule.js
index 730752a..1eeb3c7 100644
--- a/components/definition/cellRules/NetPyNECellRule.js
+++ b/components/definition/cellRules/NetPyNECellRule.js
@@ -1,19 +1,16 @@
 import React from 'react';
 import MenuItem from '@material-ui/core/MenuItem';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../base/SelectField';
+
 import Button from '@material-ui/core/Button';
 import Utils from '../../../Utils';
 import NetPyNEField from '../../general/NetPyNEField';
+import Select from '../../general/Select';
 import NetPyNECoordsRange from '../../general/NetPyNECoordsRange';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
-var PythonMethodControlledSelectField = PythonControlledCapability.createPythonControlledControlWithPythonDataFetch(SelectField);
+var PythonMethodControlledSelectField = PythonControlledCapability.createPythonControlledControlWithPythonDataFetch(Select);
 
 export default class NetPyNECellRule extends React.Component {
 
@@ -69,7 +66,7 @@ export default class NetPyNECellRule extends React.Component {
     this.updateTimer = setTimeout(updateMethod, 1000);
   }
 
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     this.setState({ currentName: nextProps.name });
   }
 
@@ -78,10 +75,11 @@ export default class NetPyNECellRule extends React.Component {
       <MenuItem
         id={name + "MenuItem"}
         key={name}
-        insetChildren={true}
-        checked={selected && selected.indexOf(name) > -1}
+        checked={selected.indexOf(name) > -1}
         value={name}
-      >{name}</MenuItem>
+      >
+        {name}
+      </MenuItem>
     ));
   }
 
@@ -97,18 +95,12 @@ export default class NetPyNECellRule extends React.Component {
     var title = this.state.errorMessage;
     var children = this.state.errorDetails;
     var dialogPop = (this.state.errorMessage != undefined ? <Dialog
+      title={title}
       open={true}
+      actions={actions}
+      bodyStyle={{ overflow: 'auto' }}
       style={{ whiteSpace: "pre-wrap" }}>
-      <DialogTitle id="alert-dialog-title">{title}</DialogTitle>
-      <DialogContent style={{ overflow: "auto" }}>
-        <DialogContentText id="alert-dialog-description">
-          {children}
-        </DialogContentText>
-      </DialogContent>
-      <DialogActions>
-        { actions }
-      </DialogActions>
-      
+      {children}
     </Dialog> 
       : undefined
     )
diff --git a/components/definition/cellRules/NetPyNECellRules.js b/components/definition/cellRules/NetPyNECellRules.js
index 418f377..3bb9c75 100644
--- a/components/definition/cellRules/NetPyNECellRules.js
+++ b/components/definition/cellRules/NetPyNECellRules.js
@@ -2,7 +2,7 @@ import React from 'react';
 import Button from '@material-ui/core/Button';
 import ContentAdd from '@material-ui/icons/Add';
 import NavigationMoreHoriz from '@material-ui/icons/MoreHoriz';
-
+import { Card, CardHeader, CardContent } from '@material-ui/core';
 import FloatingActionButton from '@material-ui/core/Fab';
 import NetPyNECellRule from './NetPyNECellRule';
 import NetPyNEThumbnail from '../../general/NetPyNEThumbnail';
@@ -13,10 +13,6 @@ import NetPyNENewMechanism from './sections/mechanisms/NetPyNENewMechanism';
 import NetPyNEMechanismThumbnail from './sections/mechanisms/NetPyNEMechanismThumbnail';
 import NavigationChevronRight from '@material-ui/icons/ChevronRight';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 
 import Utils from '../../../Utils';
 import NetPyNEHome from '../../general/NetPyNEHome';
@@ -38,9 +34,8 @@ const styles = {
       marginLeft: '15px',
       float: 'left',
       borderRadius: 25,
-      boxShadow: '0 1px 2px 0 rgba(0, 0, 0, 0.2), 0 3px 6px 0 rgba(0, 0, 0, 0.19)'
-    },
-    icon: { borderRadius: 25 }
+      boxShadow: '0 1px 2px 0 rgba(0, 0, 0, 0.2), 0 3px 6px 0 rgba(0, 0, 0, 0.19)',
+    }
   }
 }
 
@@ -475,13 +470,13 @@ export default class NetPyNECellRules extends React.Component {
         }
       } else {
         if (page == "sections" ) {
-          return <ContentAdd style={{ height: '100%' }} color="white"/>
+          return <ContentAdd style={{ height: '100%' }}/>
         } else {
           if (selectedCellRule) {
             if (!!model && !!model[selectedCellRule] && Object.keys(model[selectedCellRule]['secs']).length > 0){
-              return <NavigationMoreHoriz style={{ height: '100%' }} color="white"/>
+              return <NavigationMoreHoriz style={{ height: '100%' }}/>
             } else {
-              return <ContentAdd style={{ height: '100%' }} color="white"/>
+              return <ContentAdd style={{ height: '100%' }} />
             }
           } else {
             return ''
@@ -497,21 +492,23 @@ export default class NetPyNECellRules extends React.Component {
     let selection = null;
     let container = null;
 
-    const actions = <Button variant="contained" color="primary" label={"BACK"} onTouchTap={() => this.setState({ errorMessage: undefined, errorDetails: undefined })}/>
+    const actions = (
+      <Button 
+        variant="contained"
+        color="primary"
+        label={"BACK"}
+        onTouchTap={() => this.setState({ errorMessage: undefined, errorDetails: undefined })}
+      />
+    )
 
     const dialogPop = (errorMessage != undefined 
       ? <Dialog
+        title={errorMessage}
         open={true}
+        actions={actions}
+        bodyStyle={{ overflow: 'auto' }}
         style={{ whiteSpace: "pre-wrap" }}>
-        <DialogTitle id="alert-dialog-title">{errorMessage}</DialogTitle>
-        <DialogContent style={{ overflow: 'auto' }}>
-          <DialogContentText id="alert-dialog-description">
-            {errorDetails}
-          </DialogContentText>
-        </DialogContent>
-        <DialogActions>
-          { actions }
-        </DialogActions>
+        {errorDetails}
       </Dialog> 
       : undefined
     );
@@ -585,8 +582,8 @@ export default class NetPyNECellRules extends React.Component {
       )
     }
     
-    return (
-      <React.Fragment>
+    const content = (
+      <CardContent className={"tabContainer"}>
         <div className={"thumbnails"}>
           <div className="breadcrumb">
             <NetPyNEHome
@@ -595,10 +592,9 @@ export default class NetPyNECellRules extends React.Component {
             />
 
             <FloatingActionButton
-              style={{ "zIndex": 1 }}
               id="newCellRuleButton"
               style={styles.cellRule}
-              color ={ page != 'main' ? 'secondary' : 'primary' }
+              color={ page == 'main' ? 'primary' : 'secondary'}
               data-tooltip={ this.createTooltip('cellRule')}
               className={"actionButton smallActionButton"}
               onClick={() => this.handleHierarchyClick('main')}
@@ -611,15 +607,15 @@ export default class NetPyNECellRules extends React.Component {
             <Button
               id="newSectionButton"
               variant="contained"
-              style={{ ...styles.sections.container, ...styles.sections.icon }}
-              color={ page != 'mechanisms' ? "primary" : "secondary"}
+              style={styles.sections.container}
+              color={ page === 'mechanisms' ? 'secondary' : 'primary'}
               disabled={ selectedCellRule == undefined }
               onClick={ () => this.handleHierarchyClick('sections') }
               data-tooltip={ this.createTooltip('section')}
             >
-              <div style={{ color: 'white', height: '100%' }}>
+              <p style={{ color: 'white', height: '100%' }}>
                 {this.createLabel('sections')}
-              </div>
+              </p>
             </Button>
 
             <NavigationChevronRight style={styles.rightArrow}/>
@@ -637,9 +633,19 @@ export default class NetPyNECellRules extends React.Component {
         <div className="details">
           { selection }
         </div>
-        {dialogPop}
-      </React.Fragment>
+      </CardContent>
     );
 
+    return (
+      <Card style={{ clear: 'both' }}>
+        <CardHeader
+          id="CellRules"
+          title="Cell rules"
+          subheader="Define here the rules to set the biophysics and morphology of the cells in your network"
+        />
+        {content}
+        {dialogPop}
+      </Card>
+    );
   }
 }
diff --git a/components/definition/cellRules/sections/NetPyNESection.js b/components/definition/cellRules/sections/NetPyNESection.js
index 302fb16..7ff89e8 100644
--- a/components/definition/cellRules/sections/NetPyNESection.js
+++ b/components/definition/cellRules/sections/NetPyNESection.js
@@ -1,17 +1,13 @@
 import React from 'react';
 import MenuItem from '@material-ui/core/MenuItem';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../../base/SelectField';
 import FontIcon from '@material-ui/core/Icon';
 import CardContent from '@material-ui/core/CardContent';
 import { BottomNavigation, BottomNavigationAction } from '@material-ui/core';
+import Select from '../../../general/Select';
 import ListComponent from '../../../general/List';
 import NetPyNEField from '../../../general/NetPyNEField';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import Button from '@material-ui/core/Button';
 
 import Utils from '../../../../Utils';
@@ -19,7 +15,10 @@ import Utils from '../../../../Utils';
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
 var PythonControlledTextField = PythonControlledCapability.createPythonControlledControl(TextField);
 var PythonControlledListComponent = PythonControlledCapability.createPythonControlledControl(ListComponent);
-var PythonMethodControlledSelectField = PythonControlledCapability.createPythonControlledControlWithPythonDataFetch(SelectField);
+var PythonMethodControlledSelectField = PythonControlledCapability.createPythonControlledControlWithPythonDataFetch(Select);
+
+const hoverColor = '#66d2e2';
+const changeColor = 'rgb(0, 188, 212)';
 
 export default class NetPyNESection extends React.Component {
 
@@ -69,14 +68,13 @@ export default class NetPyNESection extends React.Component {
 
     return <BottomNavigationAction
       id={id}
-      key={index}
-      value={index}
+      key={sectionId}
       label={label}
       icon={(<FontIcon className={"fa " + icon}></FontIcon>)}
       onClick={() => this.select(index, sectionId)}
     />
   }
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     this.setState({ currentName: nextProps.name });
   }
   
@@ -87,7 +85,6 @@ export default class NetPyNESection extends React.Component {
           id={name + "MenuItem"}
           key={name}
           value={name}
-          primaryText={name}
         >
           {name}
         </MenuItem>
@@ -108,23 +105,17 @@ export default class NetPyNESection extends React.Component {
     var children = this.state.errorDetails;
     var dialogPop = (this.state.errorMessage != undefined
       ? <Dialog
+        title={title}
         open={true}
-        
+        actions={actions}
+        bodyStyle={{ overflow: 'auto' }}
         style={{ whiteSpace: "pre-wrap" }}>
-        <DialogTitle id="alert-dialog-title">{title}</DialogTitle>
-        <DialogContent style={{ overflow: 'auto' }}>
-          <DialogContentText id="alert-dialog-description">
-            {children}
-          </DialogContentText>
-        </DialogContent>
-        <DialogActions>
-          { actions }
-        </DialogActions>
+        {children}
       </Dialog> 
       : undefined
     );
 
-    var content;
+    var content = <div/>;
     var that = this;
     if (this.state.sectionId == "General") {
       content = (
@@ -200,8 +191,8 @@ export default class NetPyNESection extends React.Component {
     return (
       <div>
 
-        <CardContent style={{ "zIndex": 0 }}>
-          <BottomNavigation value={this.state.selectedIndex} showLabels>
+        <CardContent>
+          <BottomNavigation value={this.state.selectedIndex}>
             {bottomNavigationItems}
           </BottomNavigation>
         </CardContent>
diff --git a/components/definition/cellRules/sections/NetPyNESectionThumbnail.js b/components/definition/cellRules/sections/NetPyNESectionThumbnail.js
index e2e8a55..b1171f2 100644
--- a/components/definition/cellRules/sections/NetPyNESectionThumbnail.js
+++ b/components/definition/cellRules/sections/NetPyNESectionThumbnail.js
@@ -37,7 +37,7 @@ export default class NetPyNESectionThumbnail extends React.Component {
 
     let label;
     if (isHovered && selected) {
-      label = <FontIcon className="fa fa-trash-o" style={{ color: "white" }}/> 
+      label = <FontIcon className="fa fa-trash-o"/> 
     } else {
       label = name.length > 14 ? `${name.slice(0,10)}...` : name
     }
@@ -46,7 +46,7 @@ export default class NetPyNESectionThumbnail extends React.Component {
         <Button
           variant="contained"
           id={name}
-          color="primary" 
+          color="primary"
           style={ styles.btn }
           onMouseEnter={ () => this.setState({ isHovered: true }) }
           onMouseLeave={ () => this.setState({ isHovered: false }) }
diff --git a/components/definition/cellRules/sections/mechanisms/NetPyNEMechanism.js b/components/definition/cellRules/sections/mechanisms/NetPyNEMechanism.js
index de7b471..e44ad97 100644
--- a/components/definition/cellRules/sections/mechanisms/NetPyNEMechanism.js
+++ b/components/definition/cellRules/sections/mechanisms/NetPyNEMechanism.js
@@ -15,7 +15,7 @@ export default class NetPyNEMechanism extends React.Component {
     };
   }
   
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     this.setState({ currentName: nextProps.name });
   }
   
diff --git a/components/definition/cellRules/sections/mechanisms/NetPyNEMechanismThumbnail.js b/components/definition/cellRules/sections/mechanisms/NetPyNEMechanismThumbnail.js
index 5a0da12..82fde63 100644
--- a/components/definition/cellRules/sections/mechanisms/NetPyNEMechanismThumbnail.js
+++ b/components/definition/cellRules/sections/mechanisms/NetPyNEMechanismThumbnail.js
@@ -50,7 +50,7 @@ export default class NetPyNEMechanismThumbnail extends React.Component {
     const { dialogOpen, isHovered } = this.state;
     let label;
     if (isHovered && selected) {
-      label = <FontIcon className="fa fa-trash-o" color="white" hoverColor="white" style={styles.trash}/> 
+      label = <FontIcon className="fa fa-trash-o" style={styles.trash}/> 
     } else {
       label = (
         <span className={"gearThumbLabel"}>
@@ -70,7 +70,7 @@ export default class NetPyNEMechanismThumbnail extends React.Component {
         >
           <div>
             { label }
-            <FontIcon style={{ color: changeColor, '&:hover': { color: hoverColor } }} className="gpt-fullgear"/>
+            <FontIcon color="primary" className="gpt-fullgear"/>
           </div>
         </IconButton>
         <DeleteDialogBox
diff --git a/components/definition/cellRules/sections/mechanisms/NetPyNENewMechanism.js b/components/definition/cellRules/sections/mechanisms/NetPyNENewMechanism.js
index 357a606..a22e014 100644
--- a/components/definition/cellRules/sections/mechanisms/NetPyNENewMechanism.js
+++ b/components/definition/cellRules/sections/mechanisms/NetPyNENewMechanism.js
@@ -28,8 +28,8 @@ export default class NetPyNENewMechanism extends React.Component {
   constructor (props) {
     super(props);
     this.state = {
-      mechanisms: [],
-      anchorEl: null
+      open: false,
+      mechanisms: []
     };
   }
   
@@ -40,9 +40,9 @@ export default class NetPyNENewMechanism extends React.Component {
       })
   }
   
-  handleClick = value => {
-    this.setState({ anchorEl: null });
-    this.props.handleClick(value);
+  handleClick = event => {
+    this.setState({ open: false });
+    this.props.handleClick(event.target.innerText);
   };
 
   handleButtonClick = anchor => {
@@ -80,31 +80,39 @@ export default class NetPyNENewMechanism extends React.Component {
   }
   render () {
     const { disabled } = this.props;
-    const { anchorEl, mechanisms } = this.state;
+    const { open, anchorEl, mechanisms } = this.state;
     
     return <div>
       <IconButton
         data-tooltip={this.createTooltip()}
         id="newMechButton"
         className="gearAddButton"
+        color='primary'
         disabled={disabled}
         onClick={ e => this.handleButtonClick(e.currentTarget) }
       >
         <i 
-          style={{ position: 'absolute', color: changeColor, '&:hover': { color: hoverColor } }}
+          style={{ position: 'absolute', color: changeColor }}
           className="gpt-fullgear"
         />
         { this.createLabel() }
       </IconButton>
 
-      <Menu onClose={ e => this.setState({ anchorEl: null }) } 
-        open={Boolean(anchorEl)} 
-        anchorEl={anchorEl}>
+      <Menu 
+        open={open} 
+        anchorEl={anchorEl}
+        onClose={ () => this.setState({ open: false }) }
+      >
         {mechanisms.map( mechLabel => 
-          <MenuItem id={mechLabel} key={mechLabel} value={mechLabel} onClick={e => this.handleClick(mechLabel)}>
+          <MenuItem 
+            id={mechLabel}
+            key={mechLabel}
+            value={mechLabel}
+            onClick={ (event, index) => this.handleClick(event) }
+          >
             {mechLabel}
-          </MenuItem>)
-        }
+          </MenuItem>
+        )}
       </Menu>
     </div>
   }
diff --git a/components/definition/configuration/NetPyNESimConfig.js b/components/definition/configuration/NetPyNESimConfig.js
index 99dfa86..d3e9619 100644
--- a/components/definition/configuration/NetPyNESimConfig.js
+++ b/components/definition/configuration/NetPyNESimConfig.js
@@ -1,14 +1,15 @@
 import React, { Component } from 'react';
 import FontIcon from '@material-ui/core/Icon';
-import Checkbox from '@material-ui/core/Checkbox';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../base/SelectField';
+import Select from '@material-ui/core/Select';
+import { Card, CardHeader, CardContent } from '@material-ui/core';
 import { BottomNavigation, BottomNavigationAction } from '@material-ui/core';
 import ListComponent from '../../general/List';
 import NetPyNEField from '../../general/NetPyNEField';
+import Checkbox from '../../general/Checkbox';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
-var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(SelectField);
+var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(Select);
 var PythonControlledTextField = PythonControlledCapability.createPythonControlledControl(TextField);
 var PythonControlledCheckbox = PythonControlledCapability.createPythonControlledControl(Checkbox);
 var PythonControlledListComponent = PythonControlledCapability.createPythonControlledControl(ListComponent);
@@ -24,17 +25,17 @@ export default class NetPyNESimConfig extends React.Component {
     };
   }
 
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     this.setState({ model: nextProps.model });
   }
 
   select = (index, sectionId) => this.setState({ selectedIndex: index, sectionId: sectionId });
 
   render () {
-    var content;
+    var content = <div/>;
     if (this.state.sectionId == 'General') {
-      content
-        = <div style={{ float: 'left', width: '100%' }}>
+      content = (
+        <div style={{ float: 'left', width: '100%' }}>
           <div style={{ float: 'left', width: '45%' }}>
 
             <NetPyNEField id="simConfig.duration" >
@@ -114,9 +115,10 @@ export default class NetPyNESimConfig extends React.Component {
             </NetPyNEField>
           </div>
         </div>
+      )
     } else if (this.state.sectionId == 'SaveConfiguration') {
-      content
-        = <div style={{ float: 'left', width: '100%' }}>
+      content = (
+        <div style={{ float: 'left', width: '100%' }}>
           <div style={{ float: 'left', width: '45%' }}>
             <NetPyNEField id="simConfig.simLabel" >
               <PythonControlledTextField model={"simConfig.simLabel"} />
@@ -189,9 +191,10 @@ export default class NetPyNESimConfig extends React.Component {
             </NetPyNEField>
           </div>
         </div>
+      )
     } else if (this.state.sectionId == 'Record') {
-      content
-        = <div style={{ float: 'left', width: '100%' }}>
+      content = (
+        <div style={{ float: 'left', width: '100%' }}>
           <div style={{ float: 'left', width: '45%' }}>
             <NetPyNEField id="simConfig.recordCells" className={"listStyle"} >
               <PythonControlledListComponent model={"simConfig.recordCells"} />
@@ -221,9 +224,10 @@ export default class NetPyNESimConfig extends React.Component {
             </NetPyNEField>
           </div>
         </div >
+      )
     } else if (this.state.sectionId == 'ErrorChecking') {
-      content
-      = <div style={{ float: 'left', width: '100%' }}>
+      content = (
+        <div style={{ float: 'left', width: '100%' }}>
           <div style={{ float: 'left', width: '45%' }}>
             <NetPyNEField id="simConfig.checkErrors" className={"netpyneCheckbox"} >
               <PythonControlledCheckbox model={"simConfig.checkErrors"} />
@@ -235,9 +239,10 @@ export default class NetPyNESimConfig extends React.Component {
             </NetPyNEField>
           </div>
         </div >
+      )
     } else if (this.state.sectionId == 'netParams') {
-      var content
-        = <div style={{ float: 'left', width: '100%' }}>
+      var content = (
+        <div style={{ float: 'left', width: '100%' }}>
           <div style={{ float: 'left', width: '45%' }}>
             <NetPyNEField id="netParams.scale" >
               <PythonControlledTextField model={"netParams.scale"} />
@@ -292,22 +297,31 @@ export default class NetPyNESimConfig extends React.Component {
 
           </div>
         </div>
+      )
     }
 
     return (
-
-      <div>
-        <BottomNavigation value={this.state.selectedIndex} showLabels>
-          <BottomNavigationAction id={"configGeneral"} key={'General'} label={'General'} icon={<FontIcon className={"fa fa-bars"} />} onClick={() => this.select(0, 'General')} />
-          <BottomNavigationAction id={"configRecord"} key={'Record'} label={'Record'} icon={<FontIcon className={"fa fa-circle"} />} onClick={() => this.select(1, 'Record')} />
-          <BottomNavigationAction id={"configSaveConfiguration"} key={'SaveConfiguration'} label={'Save Configuration'} icon={<FontIcon className={"fa fa-floppy-o"} />} onClick={() => this.select(2, 'SaveConfiguration')} />
-          <BottomNavigationAction id={"configErrorChecking"} key={'ErrorChecking'} label={'Error Checking'} icon={<FontIcon className={"fa fa-exclamation"} />} onClick={() => this.select(3, 'ErrorChecking')} />
-          <BottomNavigationAction id={"confignetParams"} key={'netParams'} label={'Network Attributes'} icon={<FontIcon className={"fa fa-cog"} />} onClick={() => this.select(4, 'netParams')} />
-        </BottomNavigation>
-        <br />
-        {content}
-      </div>
-
+      <Card style={{ clear: 'both' }}>
+        <CardHeader
+          title="Simulation configuration"
+          subheader="Define here the configuration options for the simulation"
+          id={"Configuration"}
+        />
+
+        <CardContent className={"tabContainer"}>
+          <div>
+            <BottomNavigation value={this.state.selectedIndex}>
+              <BottomNavigationAction id={"configGeneral"} key={'General'} label={'General'} icon={<FontIcon className={"fa fa-bars"} />} onClick={() => this.select(0, 'General')} />
+              <BottomNavigationAction id={"configRecord"} key={'Record'} label={'Record'} icon={<FontIcon className={"fa fa-circle"} />} onClick={() => this.select(1, 'Record')} />
+              <BottomNavigationAction id={"configSaveConfiguration"} key={'SaveConfiguration'} label={'Save Configuration'} icon={<FontIcon className={"fa fa-floppy-o"} />} onClick={() => this.select(2, 'SaveConfiguration')} />
+              <BottomNavigationAction id={"configErrorChecking"} key={'ErrorChecking'} label={'Error Checking'} icon={<FontIcon className={"fa fa-exclamation"} />} onClick={() => this.select(3, 'ErrorChecking')} />
+              <BottomNavigationAction id={"confignetParams"} key={'netParams'} label={'Network Attributes'} icon={<FontIcon className={"fa fa-cog"} />} onClick={() => this.select(4, 'netParams')} />
+            </BottomNavigation>
+            <br />
+            {content}
+          </div>
+        </CardContent >
+      </Card >
     );
   }
 }
diff --git a/components/definition/connectivity/NetPyNEConnectivityRule.js b/components/definition/connectivity/NetPyNEConnectivityRule.js
index aaedc5f..e6368e5 100644
--- a/components/definition/connectivity/NetPyNEConnectivityRule.js
+++ b/components/definition/connectivity/NetPyNEConnectivityRule.js
@@ -1,5 +1,4 @@
 import React from 'react';
-import SelectField from '../../base/SelectField';
 import MenuItem from '@material-ui/core/MenuItem';
 import TextField from '@material-ui/core/TextField';
 import Utils from '../../../Utils';
@@ -8,17 +7,14 @@ import CardContent from '@material-ui/core/CardContent';
 import { BottomNavigation, BottomNavigationAction } from '@material-ui/core';
 import NetPyNEField from '../../general/NetPyNEField';
 import ListComponent from '../../general/List';
+import Select from '../../general/Select';
 import NetPyNECoordsRange from '../../general/NetPyNECoordsRange';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import Button from '@material-ui/core/Button';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
 var PythonControlledTextField = PythonControlledCapability.createPythonControlledControl(TextField);
-var PythonMethodControlledSelectField = PythonControlledCapability.createPythonControlledControlWithPythonDataFetch(SelectField);
+var PythonMethodControlledSelectField = PythonControlledCapability.createPythonControlledControlWithPythonDataFetch(Select);
 var PythonControlledListComponent = PythonControlledCapability.createPythonControlledControl(ListComponent);
 
 export default class NetPyNEConnectivityRule extends React.Component {
@@ -95,16 +91,15 @@ export default class NetPyNEConnectivityRule extends React.Component {
       <MenuItem
         id={name + "MenuItem"}
         key={name}
-        insetChildren={true}
         checked={selected.indexOf(name) > -1}
         value={name}
       >
         {name}
-      </MenuItem>)
-    );
+      </MenuItem>
+    ));
   }
 
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     this.setState({ currentName: nextProps.name });
   }
 
@@ -120,30 +115,24 @@ export default class NetPyNEConnectivityRule extends React.Component {
     var title = this.state.errorMessage;
     var children = this.state.errorDetails;
     var dialogPop = (this.state.errorMessage != undefined) ? <Dialog
+      title={title}
       open={true}
-      
+      actions={actions}
+      bodyStyle={{ overflow: 'auto' }}
       style={{ whiteSpace: "pre-wrap" }}>
-      <DialogTitle id="alert-dialog-title">{title}</DialogTitle>
-      <DialogContent style={{ overflow: 'auto' }}>
-        <DialogContentText id="alert-dialog-description">
-          {children}
-        </DialogContentText>
-      </DialogContent>
-      <DialogActions>
-        { actions }
-      </DialogActions>
+      {children}
     </Dialog> : undefined;
 
     if (this.state.sectionId == "General") {
-      var content
-        = <div>
+      var content = (
+        <div>
           <TextField
             id={"ConnectivityName"}
             onChange={this.handleRenameChange}
             value={this.state.currentName}
             disabled={this.renaming}
             label="The name of the connectivity rule"
-            className={"netpyneField"}
+            className="netpyneField"
           />
 
           <NetPyNEField id="netParams.connParams.sec" className="listStyle">
@@ -162,9 +151,15 @@ export default class NetPyNEConnectivityRule extends React.Component {
             <PythonMethodControlledSelectField
               model={"netParams.connParams['" + this.props.name + "']['synMech']"}
               method={"netpyne_geppetto.getAvailableSynMech"}
-              postProcessItems={(pythonData, selected) => pythonData.map(name => (<MenuItem id={name + "MenuItem"}key={name} value={name} >
-                {name}
-              </MenuItem>))}
+              postProcessItems={(pythonData, selected) => pythonData.map(name => (
+                <MenuItem 
+                  id={name + "MenuItem"}
+                  key={name}
+                  value={name}
+                >
+                  {name} 
+                </MenuItem>
+              ))}
             />
           </NetPyNEField>
 
@@ -211,6 +206,7 @@ export default class NetPyNEConnectivityRule extends React.Component {
           </NetPyNEField>
           {dialogPop}
         </div>
+      )
     } else if (this.state.sectionId == "Pre Conditions") {
       var content = <div>
         <NetPyNEField id={"netParams.connParams.preConds.pop"} >
@@ -218,7 +214,7 @@ export default class NetPyNEConnectivityRule extends React.Component {
             model={"netParams.connParams['" + this.props.name + "']['preConds']['pop']"}
             method={"netpyne_geppetto.getAvailablePops"}
             postProcessItems={this.postProcessMenuItems}
-            multiple={true}
+            multiple
           />
         </NetPyNEField>
         <NetPyNEField id={"netParams.connParams.preConds.cellModel"} >
@@ -226,7 +222,7 @@ export default class NetPyNEConnectivityRule extends React.Component {
             model={"netParams.connParams['" + this.props.name + "']['preConds']['cellModel']"}
             method={"netpyne_geppetto.getAvailableCellModels"}
             postProcessItems={this.postProcessMenuItems}
-            multiple={true}
+            multiple
           />
         </NetPyNEField>
         <NetPyNEField id={"netParams.connParams.preConds.cellType"} >
@@ -234,7 +230,7 @@ export default class NetPyNEConnectivityRule extends React.Component {
             model={"netParams.connParams['" + this.props.name + "']['preConds']['cellType']"}
             method={"netpyne_geppetto.getAvailableCellTypes"}
             postProcessItems={this.postProcessMenuItems}
-            multiple={true}
+            multiple
           />
         </NetPyNEField>
 
@@ -279,7 +275,7 @@ export default class NetPyNEConnectivityRule extends React.Component {
             model={"netParams.connParams['" + this.props.name + "']['postConds']['pop']"}
             method={"netpyne_geppetto.getAvailablePops"}
             postProcessItems={this.postProcessMenuItems}
-            multiple={true}
+            multiple
           />
         </NetPyNEField>
         <NetPyNEField id={"netParams.connParams.postConds.cellModel"} >
@@ -287,7 +283,7 @@ export default class NetPyNEConnectivityRule extends React.Component {
             model={"netParams.connParams['" + this.props.name + "']['postConds']['cellModel']"}
             method={"netpyne_geppetto.getAvailableCellModels"}
             postProcessItems={this.postProcessMenuItems}
-            multiple={true}
+            multiple
           />
         </NetPyNEField>
         <NetPyNEField id={"netParams.connParams.postConds.cellType"} >
@@ -295,7 +291,7 @@ export default class NetPyNEConnectivityRule extends React.Component {
             model={"netParams.connParams['" + this.props.name + "']['postConds']['cellType']"}
             method={"netpyne_geppetto.getAvailableCellTypes"}
             postProcessItems={this.postProcessMenuItems}
-            multiple={true}
+            multiple
           />
         </NetPyNEField>
 
@@ -357,6 +353,6 @@ export default class NetPyNEConnectivityRule extends React.Component {
 
   }
 
-  handleChange = event => this.setState({ value: event.target.value });
+  handleChange = (event, index, values) => this.setState({ values });
 
 }
diff --git a/components/definition/connectivity/NetPyNEConnectivityRules.js b/components/definition/connectivity/NetPyNEConnectivityRules.js
index 275d86a..d7ffa3a 100644
--- a/components/definition/connectivity/NetPyNEConnectivityRules.js
+++ b/components/definition/connectivity/NetPyNEConnectivityRules.js
@@ -1,9 +1,6 @@
 import React, { Component } from 'react';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
+import { Card, CardHeader, CardContent } from '@material-ui/core';
 import Button from '@material-ui/core/Button';
 import Utils from '../../../Utils';
 import NetPyNEHome from '../../general/NetPyNEHome';
@@ -172,21 +169,17 @@ export default class NetPyNEConnectivityRules extends Component {
     var title = this.state.errorMessage;
     var children = this.state.errorDetails;
     var dialogPop = (this.state.errorMessage != undefined) ? <Dialog
+      title={title}
       open={true}
-      
+      actions={actions}
+      bodyStyle={{ overflow: 'auto' }}
       style={{ whiteSpace: "pre-wrap" }}>
-      <DialogTitle id="alert-dialog-title">{title}</DialogTitle>
-      <DialogContent style={{ overflow: 'auto' }}>
-        <DialogContentText id="alert-dialog-description">
-          {children}
-        </DialogContentText>
-      </DialogContent>
-      <DialogActions>
-        { actions }
-      </DialogActions>
+      {children}
     </Dialog> : undefined;
 
+    var that = this;
     var model = this.state.value;
+    var content;
     if (this.state.page == 'main') {
 
       var ConnectivityRules = [];
@@ -203,8 +196,9 @@ export default class NetPyNEConnectivityRules extends Component {
         selectedConnectivityRule = <NetPyNEConnectivityRule name={this.state.selectedConnectivityRule} model={this.state.value[this.state.selectedConnectivityRule]} selectPage={this.selectPage} renameHandler={this.handleRenameChildren} />;
       }
 
-      return (
-        <React.Fragment>
+      content = (
+
+        <CardContent className={"tabContainer"}>
           <div className={"thumbnails"}>
             <div className="breadcrumb">
               <NetPyNEHome
@@ -222,8 +216,17 @@ export default class NetPyNEConnectivityRules extends Component {
             {selectedConnectivityRule}
             {dialogPop}
           </div>
-        </React.Fragment>
-      );
+        </CardContent>);
     }
+
+    return (
+      <Card style={{ clear: 'both' }}>
+        <CardHeader
+          title="Connectivity rules"
+          subheader="Define here the rules to generate the connections in your network"
+          id="Connections"
+        />
+        {content}
+      </Card>);
   }
 }
\ No newline at end of file
diff --git a/components/definition/plots/NetPyNEInclude.js b/components/definition/plots/NetPyNEInclude.js
index d1ddb35..398f63d 100644
--- a/components/definition/plots/NetPyNEInclude.js
+++ b/components/definition/plots/NetPyNEInclude.js
@@ -3,9 +3,15 @@ import Menu from '@material-ui/core/Menu';
 import Divider from '@material-ui/core/Divider';
 import MenuItem from '@material-ui/core/MenuItem';
 import TextField from '@material-ui/core/TextField';
+import Popover from '@material-ui/core/Popover/Popover';
 import Utils from '../../../Utils';
 import NetPyNEField from '../../general/NetPyNEField';
 
+import ListItem from '@material-ui/core/ListItem';
+import ListItemIcon from '@material-ui/core/ListItemIcon';
+import CheckIcon from '@material-ui/icons/Check';
+import List from '@material-ui/core/List';
+import ListItemText from '@material-ui/core/ListItemText';
 export default class NetPyNEInclude extends Component {
  
   constructor (props) {
@@ -208,52 +214,66 @@ export default class NetPyNEInclude extends Component {
   
   defaultMenus = () => {
     // [all, allCells,  allNetStims]
-    var mainMenus = this.props.defaultOptions.map(name => <MenuItem  
-      key={name}
-      value={name} 
-      insetChildren={true}
-      onClick={e => this.handleMainMenusClick(name, name == 'all' ? 'exclusive' : 'groups')}
-      checked={!!(this.state.include.exclusive == name || this.state.include.groups.indexOf(name) > -1)}
-      onMouseEnter={e => this.closeSecondPopover()}
-    >
-      {name}
-    </MenuItem>);
-    return mainMenus;
+    var mainMenus = this.props.defaultOptions.map(name => (
+      <MenuItem  
+        key={name}
+        value={name} 
+        onClick={e => this.handleMainMenusClick(name, name == 'all' ? 'exclusive' : 'groups')}
+        checked={!!(this.state.include.exclusive == name || this.state.include.groups.indexOf(name) > -1)}
+        onMouseEnter={e => this.closeSecondPopover()}
+      >
+        {name}
+      </MenuItem>
+    ))
+    return mainMenus
   }
   
   variableMenus = (name, size) => {
     // size: how many sub-menuItems does the menuItem has
-    var menuItems = Array.from(Array(size).keys()).map(index => <MenuItem 
-      key={name + index} 
-      value={index}
-      insetChildren={true}
-      onClick={e => this.handleSecondaryMenusClick(name == 'gids' ? 'gids' : 'popids', name, index)}
-      checked={this.IsSecondaryMenuChecked(name == 'gids' ? 'gids' : 'popids', name, index)}
-    >
-      {"cell " + index}
-    </MenuItem>);
+    var menuItems = Array.from(Array(size).keys()).map(index => (
+      <ListItem 
+        key={name + index} 
+        value={index}
+        button
+        onClick={e => this.handleSecondaryMenusClick(name == 'gids' ? 'gids' : 'popids', name, index)}
+        checked={this.IsSecondaryMenuChecked(name == 'gids' ? 'gids' : 'popids', name, index)}
+      >
+        {this.IsSecondaryMenuChecked(name == 'gids' ? 'gids' : 'popids', name, index) 
+          ? <ListItemIcon>
+            <CheckIcon/>
+          </ListItemIcon>
+          : <ListItemIcon><span/></ListItemIcon>
+        }
+        <ListItemText>{'cell ' + index}</ListItemText>
+        
+      </ListItem>
+    ))
     return <div key={name + "div"}>
       <MenuItem 
         key={name} 
         value={name}
-        insetChildren={true}
         checked={name != 'gids' ? this.state.include['groups'].indexOf(name) > -1 : false}
         onClick={name != 'gids' ? e => this.handleMainMenusClick(name, 'groups') : e => {}}
         onMouseEnter={e => this.handleSecondPopoverOpen(name, true, e.preventDefault(), e.currentTarget)}
       >
         {name}
       </MenuItem>
-      <Menu
-        style={{ height: size < 6 ? 48 * size : 240, width:170 }}
+      <Popover
+        style={{ height: size < 6 ? 48 * size : 240, width:200 }}
         key={name + "Popover"}
-        useLayerForClickAway={false}
-        open={Boolean(this.state.anchorEl2) && size > 0}
+        elevarion={1}
+        hideBackdrop
+        open={this.state.secondPopoverOpen ? this.state.secondPopoverOpen[name] : false}
         anchorEl={this.state.anchorEl2}
         anchorOrigin={{ "horizontal":"right", "vertical":"top" }}
         transformOrigin={{ "horizontal":"left", "vertical":"top" }}
+        onClose={() => this.closeSecondPopover()}
+        onMouseLeave={() => this.closeSecondPopover()}
       >
-        {menuItems}
-      </Menu>
+        <List style={{ width: 200 }}>
+          {menuItems}
+        </List>
+      </Popover>
     </div>
   }
   
@@ -299,7 +319,7 @@ export default class NetPyNEInclude extends Component {
     if (clone['groups'].indexOf('allCells') > -1 && name != 'allNetStims') {
       clone['groups'].splice( clone['groups'].indexOf('allCells'), 1 );
     }
-    this.setState({ include: clone, anchorEl2: null })
+    this.setState({ include: clone })
   }
   
   IsSecondaryMenuChecked = (group, name, index) => {
@@ -333,7 +353,7 @@ export default class NetPyNEInclude extends Component {
           onClick={e => this.handleMainPopoverOpen(true, e.preventDefault(), e.currentTarget)} 
         />
       </NetPyNEField >
-      <Menu 
+      <Popover 
         open={this.state.mainPopoverOpen}
         anchorEl={this.state.anchorEl}
         onClose={e => this.handleMainPopoverOpen(false)}
@@ -345,7 +365,7 @@ export default class NetPyNEInclude extends Component {
         {this.variableMenus('gids', this.state.data ? this.state.data.gids : 0, true)}
         <Divider/>
         {this.otherMenus()}
-      </Menu>
+      </Popover>
     </div>
   }
 }
diff --git a/components/definition/plots/NetPyNENewPlot.js b/components/definition/plots/NetPyNENewPlot.js
index b22617e..1e33212 100644
--- a/components/definition/plots/NetPyNENewPlot.js
+++ b/components/definition/plots/NetPyNENewPlot.js
@@ -1,9 +1,8 @@
 import React, { Component } from 'react';
 import Menu from '@material-ui/core/Menu';
-import Popover from '@material-ui/core/Popover';
 import MenuItem from '@material-ui/core/MenuItem';
 import ContentAdd from '@material-ui/icons/Add';
-import FloatingActionButton from '@material-ui/core/Fab';
+import Fab from '@material-ui/core/Fab';
 
 export default class NetPyNENewPlot extends React.Component {
 
@@ -20,55 +19,93 @@ export default class NetPyNENewPlot extends React.Component {
     this.setState({ anchorEl: event.currentTarget, });
   };
 
-  handleRequestClose = () => {
-    this.setState({ anchorEl: null, });
-  };
-
-  handleClick (value) {
-    this.handleRequestClose();
-    this.props.handleClick(value );
+ 
+  handleClick (plotName) {
+    this.props.handleClick(plotName);
+    this.setState({ anchorEl: null })
   }
   
   render () {
     return <div>
-      <FloatingActionButton color="primary" size="small" style={{ margin: 10, float: 'left' }} onClick={this.handleButtonClick}>
+      <Fab size='small' style={{ margin: 10, float: 'left' }} onClick={this.handleButtonClick}>
         <ContentAdd />
-      </FloatingActionButton>
-
-      <Menu onClose={this.props.onClose} open={Boolean(this.state.anchorEl)}
-        anchorEl={this.state.anchorEl}>
-        <MenuItem key={"plotTraces"} value={"plotTraces"} onClick={e => this.handleClick("plotTraces")} >
-        Traces Plot
+      </Fab>
+      <Menu 
+        open={Boolean(this.state.anchorEl)}
+        anchorEl={this.state.anchorEl}
+        onClose={() => this.setState({ anchorEl: null })}
+      >
+        <MenuItem 
+          key={"plotTraces"} 
+          value={"plotTraces"}
+          onClick={() => this.handleClick("plotTraces")} 
+        >
+            Traces Plot
         </MenuItem>
-        <MenuItem key={"plotRaster"} value={"plotRaster"} onClick={e => this.handleClick("plotRaster")}>
-        Raster Plot
+        <MenuItem 
+          key={"plotRaster"} 
+          value={"plotRaster"}
+          onClick={() => this.handleClick("plotRaster")} 
+        >
+            Raster Plot
         </MenuItem>
-        <MenuItem key={"plotSpikeHist"} value={"plotSpikeHist"} onClick={e => this.handleClick("plotSpikeHist")}>
-        Spike Histogram Plot
+        <MenuItem 
+          key={"plotSpikeHist"}
+          value={"plotSpikeHist"}
+          onClick={() => this.handleClick("plotSpikeHist")} 
+        >
+            Spike Histogram Plot
         </MenuItem>
-        <MenuItem key={"plotSpikeStats"} value={"plotSpikeStats"} onClick={e => this.handleClick("plotSpikeStats")}>
-        Spike Stats Plot
+        <MenuItem 
+          key={"plotSpikeStats"} 
+          value={"plotSpikeStats"}
+          onClick={() => this.handleClick("plotSpikeStats")} 
+        >
+            Spike Stats Plot
         </MenuItem>
-        <MenuItem key={"plotRatePSD"} value={"plotRatePSD"} onClick={e => this.handleClick("plotRatePSD")}>
-        PSD Rate Plot
+        <MenuItem 
+          key={"plotRatePSD"} 
+          value={"plotRatePSD"}
+          onClick={() => this.handleClick("plotRatePSD")} 
+        >
+            PSD Rate Plot
         </MenuItem>
-        <MenuItem key={"plotLFP"} value={"plotLFP"} onClick={e => this.handleClick("plotLFP")}>
-        LFP Plot
+        <MenuItem 
+          key={"plotLFP"} 
+          value={"plotLFP"}
+          onClick={() => this.handleClick("plotLFP")} 
+        >
+            LFP Plot
         </MenuItem>
-        <MenuItem key={"plotShape"} value={"plotShape"} onClick={e => this.handleClick("plotShape")}>
-        3D Cell Shape Plot
+        <MenuItem 
+          key={"plotShape"} 
+          value={"plotShape"}
+          onClick={() => this.handleClick("plotShape")} 
+        >
+            3D Cell Shape Plot
         </MenuItem>
-        <MenuItem key={"plot2Dnet"} value={"plot2Dnet"} onClick={e => this.handleClick("plot2Dnet")}>
-        2D Network Plot
+        <MenuItem 
+          key={"plot2Dnet"} 
+          value={"plot2Dnet"}
+          onClick={() => this.handleClick("plot2Dnet")} 
+        >
+            2D Network Plot
         </MenuItem>
-        <MenuItem key={"plotConn"} value={"plotConn"} onClick={e => this.handleClick("plotConn")}>
-        Network Connectivity Plot
+        <MenuItem 
+          key={"plotConn"} 
+          value={"plotConn"}
+          onClick={() => this.handleClick("plotConn")} 
+        >
+            Network Connectivity Plot
         </MenuItem>
-        <MenuItem key={"granger"} value={"granger"} onClick={e => this.handleClick("granger")}>
-        Granger Causality Plot
+        <MenuItem 
+          key={"granger"} 
+          value={"granger"}
+          onClick={() => this.handleClick("granger")} 
+        >
+            Granger Causality Plot
         </MenuItem>
       </Menu>
-
     </div>
   }
 }
diff --git a/components/definition/plots/NetPyNEPlotThumbnail.js b/components/definition/plots/NetPyNEPlotThumbnail.js
index 8ee241e..a298be6 100644
--- a/components/definition/plots/NetPyNEPlotThumbnail.js
+++ b/components/definition/plots/NetPyNEPlotThumbnail.js
@@ -2,9 +2,6 @@ import React, { Component } from 'react';
 import IconButton from '@material-ui/core/IconButton';
 import FontIcon from '@material-ui/core/Icon';
 
-const hoverColor = '#66d2e2';
-const changeColor = 'rgb(0, 188, 212)';
-
 export default class NetPyNEPlotThumbnail extends React.Component {
   constructor (props) {
     super(props);
@@ -21,7 +18,7 @@ export default class NetPyNEPlotThumbnail extends React.Component {
         className={"gearThumbButton " + (this.props.selected ? "selectedGearButton" : "")}
         onClick={this.handleClick}
       >
-        <FontIcon style={{ color: changeColor, '&:hover': { color: hoverColor } }} className="gpt-fullgear" />
+        <FontIcon color="primary" className="gpt-fullgear" />
         <span className={"gearThumbLabel"}>{this.props.name}</span>
       </IconButton>
     );
diff --git a/components/definition/plots/NetPyNEPlots.js b/components/definition/plots/NetPyNEPlots.js
index 1d98284..e0a2094 100644
--- a/components/definition/plots/NetPyNEPlots.js
+++ b/components/definition/plots/NetPyNEPlots.js
@@ -1,4 +1,5 @@
 import React, { Component } from 'react';
+import { Card, CardHeader, CardContent } from '@material-ui/core';
 import Utils from '../../../Utils';
 import PlotLFP from './plotTypes/PlotLFP';
 import PlotConn from './plotTypes/PlotConn';
@@ -115,19 +116,30 @@ export default class NetPyNEPlots extends React.Component {
     }
 
     return (
-      <React.Fragment>
-        <div className={"thumbnails"}>
-          <div className="breadcrumb">
-            <NetPyNENewPlot style={{ float: 'left', marginTop: "12px", marginLeft: "18px" }}
-              handleClick={this.handleNewPlot} />
+      <Card style={{ clear: 'both' }}>
+        <CardHeader
+          title="Plots configuration"
+          subheader="Define here the options to customize the plots"
+          id="Plots"
+        />
+        <CardContent className={"tabContainer"} >
+          <div className={"thumbnails"}>
+            <div className="breadcrumb">
+              <NetPyNENewPlot 
+                style={{ float: 'left', marginTop: "12px", marginLeft: "18px" }}
+                handleClick={this.handleNewPlot} 
+              />
+            />
+
+            </div>
+            <div style={{ clear: "both" }}></div>
+            {plots}
+          </div>
+          <div className={"details"}>
+            {selectedPlot}
           </div>
-          <div style={{ clear: "both" }}></div>
-          {plots}
-        </div>
-        <div className={"details"}>
-          {selectedPlot}
-        </div>
-      </React.Fragment>
+        </CardContent>
+      </Card>
     );
   }
 }
diff --git a/components/definition/plots/plotTypes/Plot2Dnet.js b/components/definition/plots/plotTypes/Plot2Dnet.js
index 517f8ed..20f138e 100644
--- a/components/definition/plots/plotTypes/Plot2Dnet.js
+++ b/components/definition/plots/plotTypes/Plot2Dnet.js
@@ -1,12 +1,12 @@
 import React, { Component } from 'react';
-import Checkbox from '@material-ui/core/Checkbox';
-import SelectField from '../../../base/SelectField';
+import Checkbox from '../../../general/Checkbox';
+import Select from '../../../general/Select';
 import NetPyNEInclude from '../NetPyNEInclude';
 import NetPyNEField from '../../../general/NetPyNEField';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
 var PythonControlledCheckbox = PythonControlledCapability.createPythonControlledControl(Checkbox);
-var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(SelectField);
+var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(Select);
 
 export default class Plot2Dnet extends React.Component {
 
diff --git a/components/definition/plots/plotTypes/PlotConn.js b/components/definition/plots/plotTypes/PlotConn.js
index bf55eb1..f322003 100644
--- a/components/definition/plots/plotTypes/PlotConn.js
+++ b/components/definition/plots/plotTypes/PlotConn.js
@@ -1,10 +1,10 @@
 import React, { Component } from 'react';
-import SelectField from '../../../base/SelectField';
+import Select from '../../../general/Select';
 import NetPyNEInclude from '../NetPyNEInclude';
 import NetPyNEField from '../../../general/NetPyNEField';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
-var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(SelectField);
+var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(Select);
 
 export default class plotConn extends React.Component {
 
diff --git a/components/definition/plots/plotTypes/PlotLFP.js b/components/definition/plots/plotTypes/PlotLFP.js
index ec8b065..6d6c523 100644
--- a/components/definition/plots/plotTypes/PlotLFP.js
+++ b/components/definition/plots/plotTypes/PlotLFP.js
@@ -1,7 +1,7 @@
 import React from 'react';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../../../general/Checkbox';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../../base/SelectField';
+import Select from '../../../general/Select';
 import TimeRange from '../TimeRange'
 import ListComponent from '../../../general/List';
 import NetPyNEField from '../../../general/NetPyNEField';
@@ -10,7 +10,7 @@ var PythonControlledCapability = require('geppetto-client/js/communication/geppe
 var PythonControlledCheckbox = PythonControlledCapability.createPythonControlledControl(Checkbox);
 var PythonControlledTextField = PythonControlledCapability.createPythonControlledControl(TextField);
 var PythonControlledListComponent = PythonControlledCapability.createPythonControlledControl(ListComponent);
-var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(SelectField);
+var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(Select);
 
 export default class PlotLFP extends React.Component {
 
diff --git a/components/definition/plots/plotTypes/PlotRaster.js b/components/definition/plots/plotTypes/PlotRaster.js
index e765d62..320cc0d 100644
--- a/components/definition/plots/plotTypes/PlotRaster.js
+++ b/components/definition/plots/plotTypes/PlotRaster.js
@@ -1,7 +1,7 @@
 import React, { Component } from 'react';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../../../general/Checkbox';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../../base/SelectField';
+import Select from '../../../general/Select';
 import TimeRange from '../TimeRange'
 import NetPyNEInclude from '../NetPyNEInclude';
 import NetPyNEField from '../../../general/NetPyNEField';
@@ -9,7 +9,7 @@ import NetPyNEField from '../../../general/NetPyNEField';
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
 var PythonControlledCheckbox = PythonControlledCapability.createPythonControlledControl(Checkbox);
 var PythonControlledTextField = PythonControlledCapability.createPythonControlledControl(TextField);
-var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(SelectField);
+var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(Select);
 
 export default class PlotRaster extends React.Component {
 
diff --git a/components/definition/plots/plotTypes/PlotRatePSD.js b/components/definition/plots/plotTypes/PlotRatePSD.js
index a8e4023..2c0a6f1 100644
--- a/components/definition/plots/plotTypes/PlotRatePSD.js
+++ b/components/definition/plots/plotTypes/PlotRatePSD.js
@@ -1,5 +1,5 @@
 import React, { Component } from 'react';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../../../general/Checkbox';
 import TextField from '@material-ui/core/TextField';
 import TimeRange from '../TimeRange'
 import NetPyNEInclude from '../NetPyNEInclude';
diff --git a/components/definition/plots/plotTypes/PlotShape.js b/components/definition/plots/plotTypes/PlotShape.js
index 3817a80..c720e68 100644
--- a/components/definition/plots/plotTypes/PlotShape.js
+++ b/components/definition/plots/plotTypes/PlotShape.js
@@ -1,14 +1,14 @@
 import React, { Component } from 'react';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../../../general/Checkbox';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../../base/SelectField';
+import Select from '../../../general/Select';
 import ListComponent from '../../../general/List'; 
 import NetPyNEField from '../../../general/NetPyNEField';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
 var PythonControlledCheckbox = PythonControlledCapability.createPythonControlledControl(Checkbox);
 var PythonControlledTextField = PythonControlledCapability.createPythonControlledControl(TextField);
-var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(SelectField);
+var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(Select);
 var PythonControlledListComponent = PythonControlledCapability.createPythonControlledControl(ListComponent);
 
 export default class PlotShape extends React.Component {
diff --git a/components/definition/plots/plotTypes/PlotSpikeHist.js b/components/definition/plots/plotTypes/PlotSpikeHist.js
index ab18659..4b8853b 100644
--- a/components/definition/plots/plotTypes/PlotSpikeHist.js
+++ b/components/definition/plots/plotTypes/PlotSpikeHist.js
@@ -1,7 +1,7 @@
 import React, { Component } from 'react';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../../../general/Checkbox';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../../base/SelectField';
+import Select from '../../../general/Select';
 import TimeRange from '../TimeRange'
 import NetPyNEInclude from '../NetPyNEInclude';
 import NetPyNEField from '../../../general/NetPyNEField';
@@ -9,7 +9,7 @@ import NetPyNEField from '../../../general/NetPyNEField';
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
 var PythonControlledCheckbox = PythonControlledCapability.createPythonControlledControl(Checkbox);
 var PythonControlledTextField = PythonControlledCapability.createPythonControlledControl(TextField);
-var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(SelectField);
+var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(Select);
 
 export default class PlotSpikeHist extends React.Component {
 
diff --git a/components/definition/plots/plotTypes/PlotSpikeStats.js b/components/definition/plots/plotTypes/PlotSpikeStats.js
index 65ccef2..32fc1c3 100644
--- a/components/definition/plots/plotTypes/PlotSpikeStats.js
+++ b/components/definition/plots/plotTypes/PlotSpikeStats.js
@@ -1,6 +1,6 @@
 import React, { Component } from 'react';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../../base/SelectField';
+import Select from '../../../general/Select';
 import TimeRange from '../TimeRange'
 import NetPyNEInclude from '../NetPyNEInclude';
 import ListComponent from '../../../general/List';
@@ -8,7 +8,7 @@ import NetPyNEField from '../../../general/NetPyNEField';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
 var PythonControlledTextField = PythonControlledCapability.createPythonControlledControl(TextField);
-var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(SelectField);
+var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(Select);
 var PythonControlledListComponent = PythonControlledCapability.createPythonControlledControl(ListComponent);
 
 export default class PlotSpikeStats extends React.Component {
diff --git a/components/definition/plots/plotTypes/PlotTraces.js b/components/definition/plots/plotTypes/PlotTraces.js
index f08ddf5..cd15f69 100644
--- a/components/definition/plots/plotTypes/PlotTraces.js
+++ b/components/definition/plots/plotTypes/PlotTraces.js
@@ -1,7 +1,7 @@
 import React, { Component } from 'react';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../../../general/Checkbox';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../../base/SelectField';
+import Select from '../../../general/Select';
 import TimeRange from '../TimeRange'
 import NetPyNEInclude from '../NetPyNEInclude';
 import NetPyNEField from '../../../general/NetPyNEField';
@@ -9,7 +9,7 @@ import NetPyNEField from '../../../general/NetPyNEField';
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
 var PythonControlledCheckbox = PythonControlledCapability.createPythonControlledControl(Checkbox);
 var PythonControlledTextField = PythonControlledCapability.createPythonControlledControl(TextField);
-var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(SelectField);
+var PythonControlledSelectField = PythonControlledCapability.createPythonControlledControl(Select);
 
 export default class PlotTraces extends React.Component {
 
diff --git a/components/definition/populations/Dimensions.js b/components/definition/populations/Dimensions.js
index 70a4e52..c8dd78b 100644
--- a/components/definition/populations/Dimensions.js
+++ b/components/definition/populations/Dimensions.js
@@ -1,6 +1,6 @@
 import React, { Component } from 'react';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../base/SelectField';
+import Select from '@material-ui/core/Select';
 import MenuItem from '@material-ui/core/MenuItem';
 import Utils from '../../../Utils';
 
@@ -18,7 +18,7 @@ export default class DimensionsComponent extends Component {
     super(props);
     this.state = {
       modelName: props.modelName,
-      dimension: null
+      dimension: 'numCells'
     };
     this.popDimensionsOptions = [{ label: 'Number of cells', value: 'numCells' }, { label: 'Density', value: 'density' }, { label: 'Grid spacing', value: 'gridSpacing' }];
 
@@ -35,9 +35,9 @@ export default class DimensionsComponent extends Component {
     this.updateLayout();
   }
 
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     if (this.state.modelName != nextProps.modelName) {
-      this.setState({ modelName: nextProps.modelName, dimension: null });
+      this.setState({ modelName: nextProps.modelName, dimension: 'numCells' });
     }
   }
 
@@ -53,47 +53,58 @@ export default class DimensionsComponent extends Component {
     Promise.all(requests).then(values => {
       var index = values.indexOf(true);
       if (index == -1) {
-        this.setState({ dimension: null });
+        this.setState({ dimension: 'numCells' });
       } else {
         this.setState({ dimension: this.popDimensionsOptions[index].value });
       }
     });
   }
 
+  handleDimValueChange (event) {
+    var newValue = (event.target.type == 'number') ? parseFloat(event.target.value) : event.target.value;
+    // Update State
+    if (Object.is(newValue, NaN)) {
+      newValue = 0
+    }
+    this.setState({ value: newValue });
+    this.triggerUpdate(() => {
+      // Set Population Dimension Python Side
+      Utils
+        .evalPythonMessage('netpyne_geppetto.netParams.popParams.setParam', [this.props.modelName, this.props.dimensionType, newValue])
+        .then(function (response) {
+          GEPPETTO.trigger("population_update_dimension")
+        });
+    });
+  }
+
   render () {
 
     return (
       <div>
         <NetPyNEField id="netParams.popParams.numCells" className={"netpyneFieldNoWidth"} noStyle>
-          <SelectField
+          <Select
             id={"popParamsDimensionsSelect"}
             value={this.state.dimension}
             onChange={event => this.setState({ dimension: event.target.value })}
           >
             {(this.popDimensionsOptions != undefined)
-              ? this.popDimensionsOptions.map(function (popDimensionsOption) {
-                return (<MenuItem id={"popParamS" + popDimensionsOption.value} key={popDimensionsOption.value} value={popDimensionsOption.value} >{popDimensionsOption.label}</MenuItem>)
-              }) : null}
-          </SelectField>
+              ? this.popDimensionsOptions.map(popDimensionsOption => (
+                <MenuItem 
+                  id={"popParamS" + popDimensionsOption.value} 
+                  key={popDimensionsOption.value}
+                  value={popDimensionsOption.value}
+                >
+                  {popDimensionsOption.label}
+                </MenuItem>
+              )) : null}
+          </Select>
         </NetPyNEField>
         {
           this.state.dimension != undefined && this.state.dimension != ""
             ? <NetPyNEField id={"netParams.popParams." + this.state.dimension} className={"netpyneRightField"} noStyle>
               <PythonControlledTextField
                 id={"popParamsDimensions"}
-                handleChange={function (event) {
-                  var newValue = (event.target.type == 'number') ? parseFloat(event.target.value) : event.target.value;
-                  // Update State
-                  this.setState({ value: newValue });
-                  this.triggerUpdate(() => {
-                    // Set Population Dimension Python Side
-                    Utils
-                      .evalPythonMessage('netpyne_geppetto.netParams.popParams.setParam', [this.props.modelName, this.props.dimensionType, newValue])
-                      .then(function (response) {
-                        GEPPETTO.trigger("population_update_dimension")
-                      });
-                  });
-                }}
+                handleChange={this.handleDimValueChange}
                 model={"netParams.popParams['" + this.state.modelName + "']['" + this.state.dimension + "']"}
                 modelName={this.state.modelName}
                 dimensionType={this.state.dimension}
diff --git a/components/definition/populations/NetPyNEPopulation.js b/components/definition/populations/NetPyNEPopulation.js
index deb707b..955473e 100644
--- a/components/definition/populations/NetPyNEPopulation.js
+++ b/components/definition/populations/NetPyNEPopulation.js
@@ -8,10 +8,6 @@ import NetPyNEField from '../../general/NetPyNEField';
 import DimensionsComponent from './Dimensions';
 import NetPyNECoordsRange from '../../general/NetPyNECoordsRange';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import Button from '@material-ui/core/Button';
 
 
@@ -32,7 +28,7 @@ export default class NetPyNEPopulation extends React.Component {
     };
   }
 
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     this.setState({ currentName: nextProps.name, selectedIndex: 0, sectionId: "General" });
   }
 
@@ -123,18 +119,12 @@ export default class NetPyNEPopulation extends React.Component {
     var title = this.state.errorMessage;
     var children = this.state.errorDetails;
     var dialogPop = (this.state.errorMessage != undefined) ? <Dialog
+      title={title}
       open={true}
-      
+      actions={actions}
+      bodyStyle={{ overflow: 'auto' }}
       style={{ whiteSpace: "pre-wrap" }}>
-      <DialogTitle id="alert-dialog-title">{title}</DialogTitle>
-      <DialogContent style={{ overflow: 'auto' }}>
-        <DialogContentText id="alert-dialog-description">
-          {children}
-        </DialogContentText>
-      </DialogContent>
-      <DialogActions>
-        { actions }
-      </DialogActions>
+      {children}
     </Dialog> : undefined;
     if (this.state.sectionId == "General") {
       var content
@@ -213,7 +203,7 @@ export default class NetPyNEPopulation extends React.Component {
     return (
       <div>
         <CardContent>
-          <BottomNavigation value={this.state.selectedIndex} showLabels>
+          <BottomNavigation value={this.state.selectedIndex}>
             {this.getModelParameters()}
           </BottomNavigation>
         </CardContent>
diff --git a/components/definition/populations/NetPyNEPopulations.js b/components/definition/populations/NetPyNEPopulations.js
index 4dd9429..8969524 100644
--- a/components/definition/populations/NetPyNEPopulations.js
+++ b/components/definition/populations/NetPyNEPopulations.js
@@ -6,10 +6,6 @@ import NetPyNEPopulation from './NetPyNEPopulation';
 import NetPyNEAddNew from '../../general/NetPyNEAddNew';
 import NetPyNEThumbnail from '../../general/NetPyNEThumbnail';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import Button from '@material-ui/core/Button';
 
 export default class NetPyNEPopulations extends React.Component {
@@ -168,18 +164,12 @@ export default class NetPyNEPopulations extends React.Component {
     var title = this.state.errorMessage;
     var children = this.state.errorDetails;
     var dialogPop = (this.state.errorMessage != undefined) ? <Dialog
+      title={title}
       open={true}
-      
+      actions={actions}
+      bodyStyle={{ overflow: 'auto' }}
       style={{ whiteSpace: "pre-wrap" }}>
-      <DialogTitle id="alert-dialog-title">{title}</DialogTitle>
-      <DialogContent style={{ overflow: 'auto' }}>
-        <DialogContentText id="alert-dialog-description">
-          {children}
-        </DialogContentText>
-      </DialogContent>
-      <DialogActions>
-        { actions }
-      </DialogActions>
+      {children}
     </Dialog> : undefined;
 
     if (this.state.value != undefined && this.state.value !== '') {
@@ -202,29 +192,35 @@ export default class NetPyNEPopulations extends React.Component {
     }
 
     return (
-      <React.Fragment>
-        <div className={"details"}>
-          {selectedPopulation}
-        </div>
-        <div className={"thumbnails"}>
-          <div className="breadcrumb">
-            <NetPyNEHome
-              selection={this.state.selectedPopulation}
-              handleClick={() => this.setState({ selectedPopulation: undefined })}
-            />
-
-            <NetPyNEAddNew 
-              id={"newPopulationButton"} 
-              handleClick={this.handleNewPopulation}
-            />
-
+      <Card style={{ clear: 'both' }}>
+        <CardHeader
+          title="Populations"
+          subheader="Define here the populations of your network"
+          id={"Populations"}
+        />
+        <CardContent className={"tabContainer"} >
+          <div className={"details"}>
+            {selectedPopulation}
+          </div>
+          <div className={"thumbnails"}>
+            <div className="breadcrumb">
+              <NetPyNEHome
+                selection={this.state.selectedPopulation}
+                handleClick={() => this.setState({ selectedPopulation: undefined })}
+              />
+
+              <NetPyNEAddNew 
+                id={"newPopulationButton"} 
+                handleClick={this.handleNewPopulation}
+              />
+
+            </div>
+            <div style={{ clear: "both" }}></div>
+            {populations}
           </div>
-          <div style={{ clear: "both" }}></div>
-          {populations}
-        </div>
-       
+        </CardContent>
         {dialogPop}
-      </React.Fragment>
+      </Card>
 
     );
   }
diff --git a/components/definition/stimulationSources/NetPyNEStimulationSource.js b/components/definition/stimulationSources/NetPyNEStimulationSource.js
index 6bc1381..59027e4 100644
--- a/components/definition/stimulationSources/NetPyNEStimulationSource.js
+++ b/components/definition/stimulationSources/NetPyNEStimulationSource.js
@@ -1,15 +1,11 @@
 import React from 'react';
 import MenuItem from '@material-ui/core/MenuItem';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../base/SelectField';
 import Utils from '../../../Utils';
+import Select from '../../general/Select';
 import ListComponent from '../../general/List';
 import NetPyNEField from '../../general/NetPyNEField';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import Button from '@material-ui/core/Button';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
@@ -22,7 +18,7 @@ export default class NetPyNEStimulationSource extends React.Component {
     super(props);
     this.state = {
       currentName: props.name,
-      sourceType: '',
+      sourceType: 'IClamp',
       errorMessage: undefined,
       errorDetails: undefined
     };
@@ -36,9 +32,9 @@ export default class NetPyNEStimulationSource extends React.Component {
     this.handleStimSourceTypeChange = this.handleStimSourceTypeChange.bind(this);
   }
 
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     if (this.state.currentName != nextProps.name) {
-      this.setState({ currentName: nextProps.name, sourceType: null });
+      this.setState({ currentName: nextProps.name, sourceType: '' });
     }
   }
 
@@ -107,20 +103,17 @@ export default class NetPyNEStimulationSource extends React.Component {
     ];
     var title = this.state.errorMessage;
     var children = this.state.errorDetails;
-    var dialogPop = (this.state.errorMessage != undefined) ? <Dialog
-      open={true}
-      
-      style={{ whiteSpace: "pre-wrap" }}>
-      <DialogTitle id="alert-dialog-title">{title}</DialogTitle>
-      <DialogContent style={{ overflow: 'auto' }}>
-        <DialogContentText id="alert-dialog-description">
-          {children}
-        </DialogContentText>
-      </DialogContent>
-      <DialogActions>
-        { actions }
-      </DialogActions>
-    </Dialog> : undefined;
+    var dialogPop = (this.state.errorMessage != undefined) ? (
+      <Dialog
+        title={title}
+        open={true}
+        actions={actions}
+        bodyStyle={{ overflow: 'auto' }}
+        style={{ whiteSpace: "pre-wrap" }}>
+        {children}
+      </Dialog> 
+    )
+      : undefined;
 
     if (this.state.sourceType == 'IClamp') {
       var variableContent = (
@@ -284,11 +277,12 @@ export default class NetPyNEStimulationSource extends React.Component {
             disabled={this.renaming}
             className={"netpyneField"}
             id={"sourceName"}
+            label="Stimulation source name"
           />
           <br />
 
           <NetPyNEField id="netParams.stimSourceParams.type" className={"netpyneFieldNoWidth"} noStyle>
-            <SelectField
+            <Select
               id={"stimSourceSelect"}
               label="stimulation type"
               value={this.state.sourceType}
@@ -296,12 +290,18 @@ export default class NetPyNEStimulationSource extends React.Component {
             >
               {(this.stimSourceTypeOptions != undefined)
                 ? this.stimSourceTypeOptions.map(function (stimSourceTypeOption) {
-                  return (<MenuItem id={stimSourceTypeOption.type + "MenuItem"} key={stimSourceTypeOption.type} value={stimSourceTypeOption.type}>
-                    {stimSourceTypeOption.type}
-                  </MenuItem>)
+                  return (
+                    <MenuItem
+                      id={stimSourceTypeOption.type + "MenuItem"}
+                      key={stimSourceTypeOption.type}
+                      value={stimSourceTypeOption.type}
+                    >
+                      {stimSourceTypeOption.type}
+                    </MenuItem>
+                  )
                 }) : null
               }
-            </SelectField>
+            </Select>
           </NetPyNEField>
         </div>
         {variableContent}
diff --git a/components/definition/stimulationSources/NetPyNEStimulationSources.js b/components/definition/stimulationSources/NetPyNEStimulationSources.js
index d8b7b24..0f440b6 100644
--- a/components/definition/stimulationSources/NetPyNEStimulationSources.js
+++ b/components/definition/stimulationSources/NetPyNEStimulationSources.js
@@ -1,14 +1,12 @@
 import React, { Component } from 'react';
+import { Card, CardHeader, CardContent } from '@material-ui/core';
+
 import Utils from '../../../Utils';
 import NetPyNEHome from '../../general/NetPyNEHome';
 import NetPyNEAddNew from '../../general/NetPyNEAddNew';
 import NetPyNEThumbnail from '../../general/NetPyNEThumbnail';
 import NetPyNEStimulationSource from './NetPyNEStimulationSource';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import Button from '@material-ui/core/Button';
 
 export default class NetPyNEStimulationSources extends Component {
@@ -149,17 +147,9 @@ export default class NetPyNEStimulationSources extends Component {
       title={title}
       open={true}
       actions={actions}
-      
+      bodyStyle={{ overflow: 'auto' }}
       style={{ whiteSpace: "pre-wrap" }}>
-      <DialogTitle id="alert-dialog-title">{title}</DialogTitle>
-      <DialogContent style={{ overflow: 'auto' }}>
-        <DialogContentText id="alert-dialog-description">
-          {children}
-        </DialogContentText>
-      </DialogContent>
-      <DialogActions>
-        { actions }
-      </DialogActions>
+      {children}
     </Dialog> : undefined;
 
     var model = this.state.value;
@@ -178,8 +168,8 @@ export default class NetPyNEStimulationSources extends Component {
       selectedStimulationSource = <NetPyNEStimulationSource name={this.state.selectedStimulationSource} renameHandler={this.handleRenameChildren} />;
     }
     
-    return (
-      <React.Fragment>
+    var content = (
+      <CardContent className={"tabContainer"} >
         <div className={"details"}>
           {selectedStimulationSource}
         </div>
@@ -197,10 +187,19 @@ export default class NetPyNEStimulationSources extends Component {
           <div style={{ clear: "both" }}></div>
           {StimulationSources}
         </div>
-        {dialogPop}
-      </React.Fragment>
+      </CardContent>
     );
 
-   
+    return (
+      <Card style={{ clear: 'both' }}>
+        <CardHeader
+          title="Stimulation sources"
+          subheader="Define here the sources of stimulation in your network"
+          id={"StimulationSources"}
+        />
+        {content}
+        {dialogPop}
+      </Card>
+    );
   }
 }
\ No newline at end of file
diff --git a/components/definition/stimulationTargets/NetPyNEStimulationTarget.js b/components/definition/stimulationTargets/NetPyNEStimulationTarget.js
index e905b84..22c29ed 100644
--- a/components/definition/stimulationTargets/NetPyNEStimulationTarget.js
+++ b/components/definition/stimulationTargets/NetPyNEStimulationTarget.js
@@ -2,23 +2,19 @@ import React from 'react';
 import CardText from '@material-ui/core/Card';
 import MenuItem from '@material-ui/core/MenuItem';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../base/SelectField';
 import CondsIcon from '@material-ui/icons/LocalOffer';
 import StimTargetIcon from '@material-ui/icons/Reorder';
 import { BottomNavigation, BottomNavigationAction } from '@material-ui/core';
 import Utils from '../../../Utils';
+import Select from '../../general/Select';
 import NetPyNEField from '../../general/NetPyNEField';
 import StimulationConditions from './StimulationConditions';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import Button from '@material-ui/core/Button';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
 var PythonControlledTextField = PythonControlledCapability.createPythonControlledControl(TextField);
-var PythonMethodControlledSelectField = PythonControlledCapability.createPythonControlledControlWithPythonDataFetch(SelectField);
+var PythonMethodControlledSelectField = PythonControlledCapability.createPythonControlledControlWithPythonDataFetch(Select);
 
 export default class NetPyNEStimulationTarget extends React.Component {
 
@@ -67,7 +63,7 @@ export default class NetPyNEStimulationTarget extends React.Component {
     GEPPETTO.off('stimSources_change')
   }
   
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     if (this.state.currentName != nextProps.name) {
       this.setState({ currentName: nextProps.name, selectedIndex:0, sectionId:'General' });
     }
@@ -153,17 +149,12 @@ export default class NetPyNEStimulationTarget extends React.Component {
     var title = this.state.errorMessage;
     var children = this.state.errorDetails;
     var dialogPop = (this.state.errorMessage != undefined) ? <Dialog
+      title={title}
       open={true}
+      actions={actions}
+      bodyStyle={{ overflow: 'auto' }}
       style={{ whiteSpace: "pre-wrap" }}>
-      <DialogTitle id="alert-dialog-title">{title}</DialogTitle>
-      <DialogContent style={{ overflow: 'auto' }}>
-        <DialogContentText id="alert-dialog-description">
-          {children}
-        </DialogContentText>
-      </DialogContent>
-      <DialogActions>
-        { actions }
-      </DialogActions>
+      {children}
     </Dialog> : undefined;
 
     if (this.state.sectionId == "General") {
@@ -175,6 +166,7 @@ export default class NetPyNEStimulationTarget extends React.Component {
             disabled={this.renaming}
             className={"netpyneField"}
             id={"targetName"}
+            label="Stimulation target name"
           />
           <br/>
           
@@ -244,7 +236,7 @@ export default class NetPyNEStimulationTarget extends React.Component {
     return (
       <div>
         <CardText>
-          <BottomNavigation value={this.state.selectedIndex} showLabels>
+          <BottomNavigation value={this.state.selectedIndex}>
             {bottomNavigationItems}
           </BottomNavigation>
         </CardText>
diff --git a/components/definition/stimulationTargets/NetPyNEStimulationTargets.js b/components/definition/stimulationTargets/NetPyNEStimulationTargets.js
index f681b29..f226b66 100644
--- a/components/definition/stimulationTargets/NetPyNEStimulationTargets.js
+++ b/components/definition/stimulationTargets/NetPyNEStimulationTargets.js
@@ -1,14 +1,12 @@
 import React, { Component } from 'react';
+import { Card, CardHeader, CardContent } from '@material-ui/core';
+
 import Utils from '../../../Utils';
 import NetPyNEHome from '../../general/NetPyNEHome';
 import NetPyNEAddNew from '../../general/NetPyNEAddNew';
 import NetPyNEThumbnail from '../../general/NetPyNEThumbnail';
 import NetPyNEStimulationTarget from './NetPyNEStimulationTarget';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import Button from '@material-ui/core/Button';
 
 
@@ -147,17 +145,12 @@ export default class NetPyNEStimulationTargets extends Component {
     var title = this.state.errorMessage;
     var children = this.state.errorDetails;
     var dialogPop = (this.state.errorMessage != undefined) ? <Dialog
+      title={title}
       open={true}
+      actions={actions}
+      bodyStyle={{ overflow: 'auto' }}
       style={{ whiteSpace: "pre-wrap" }}>
-      <DialogTitle id="alert-dialog-title">{title}</DialogTitle>
-      <DialogContent style={{ overflow: 'auto' }}>
-        <DialogContentText id="alert-dialog-description">
-          {children}
-        </DialogContentText>
-      </DialogContent>
-      <DialogActions>
-        { actions }
-      </DialogActions>
+      {children}
     </Dialog> : undefined;
 
     var model = this.state.value;
@@ -175,9 +168,8 @@ export default class NetPyNEStimulationTargets extends Component {
       selectedStimulationTarget = <NetPyNEStimulationTarget name={this.state.selectedStimulationTarget} renameHandler={this.handleRenameChildren}/>;
     }
 
-    return (
-      <React.Fragment>
-      
+    var content = (
+      <CardContent className={"tabContainer"} >
         <div className={"details"}>
           {selectedStimulationTarget}
         </div>
@@ -194,10 +186,19 @@ export default class NetPyNEStimulationTargets extends Component {
           <div style={{ clear: "both" }}></div>
           {StimulationTargets}
         </div>
-        {dialogPop}
-      </React.Fragment>
+      </CardContent>
     );
 
-
+    return (
+      <Card style={{ clear: 'both' }}>
+        <CardHeader
+          title="Stimulation target rules"
+          subheader="Define here the rules to connect stimulation sources to targets in your network"
+          id="StimulationTargets"
+        />
+        {content}
+        {dialogPop}
+      </Card>
+    );
   }
 }
\ No newline at end of file
diff --git a/components/definition/stimulationTargets/StimulationConditions.js b/components/definition/stimulationTargets/StimulationConditions.js
index 5d6c36c..cb3ae43 100644
--- a/components/definition/stimulationTargets/StimulationConditions.js
+++ b/components/definition/stimulationTargets/StimulationConditions.js
@@ -1,13 +1,13 @@
 import React, { Component } from 'react';
 import MenuItem from '@material-ui/core/MenuItem';
-import SelectField from '../../base/SelectField';
+import Select from '../../general/Select';
 import ListComponent from '../../general/List';
 import NetPyNEField from '../../general/NetPyNEField';
 import NetPyNECoordsRange from '../../general/NetPyNECoordsRange';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
 var PythonControlledListComponent = PythonControlledCapability.createPythonControlledControl(ListComponent);
-var PythonMethodControlledSelectField = PythonControlledCapability.createPythonControlledControlWithPythonDataFetch(SelectField);
+var PythonMethodControlledSelectField = PythonControlledCapability.createPythonControlledControlWithPythonDataFetch(Select);
 
 export default class StimulationConditions extends React.Component {
 
@@ -22,7 +22,6 @@ export default class StimulationConditions extends React.Component {
       <MenuItem
         id={name + "MenuItem"}
         key={name}
-        insetChildren={true}
         checked={selected.indexOf(name) > -1}
         value={name}
       >
diff --git a/components/definition/synapses/NetPyNESynapse.js b/components/definition/synapses/NetPyNESynapse.js
index 12c1ae1..723ceeb 100644
--- a/components/definition/synapses/NetPyNESynapse.js
+++ b/components/definition/synapses/NetPyNESynapse.js
@@ -1,13 +1,9 @@
 import React, { Component } from 'react';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../base/SelectField';
+import Select from '../../general/Select';
 import Utils from '../../../Utils';
 import NetPyNEField from '../../general/NetPyNEField';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import Button from '@material-ui/core/Button';
 
 var PythonControlledCapability = require('geppetto-client/js/communication/geppettoJupyter/PythonControlledCapability');
@@ -19,7 +15,7 @@ export default class NetPyNESynapse extends React.Component {
     super(props);
     this.state = {
       currentName: props.name,
-      synMechMod: '',
+      synMechMod: 'Exp2Syn',
       errorMessage: undefined,
       errorDetails: undefined
     };
@@ -29,9 +25,9 @@ export default class NetPyNESynapse extends React.Component {
     this.handleSynMechModChange = this.handleSynMechModChange.bind(this);
   }
 
-  componentWillReceiveProps (nextProps) {
+  UNSAFE_componentWillReceiveProps (nextProps) {
     if (this.state.currentName != nextProps.name){
-      this.setState({ currentName: nextProps.name, synMechMod: null });      
+      this.setState({ currentName: nextProps.name, synMechMod: '' });      
     }
   }
   
@@ -79,14 +75,15 @@ export default class NetPyNESynapse extends React.Component {
         } else if (response[1]) {
           this.setState({ synMechMod: "Exp2Syn" })
         } else {
-          this.setState({ synMechMod: "" })
+          this.setState({ synMechMod: "Exp2Syn" })
         }
       });
   }
   
   handleSynMechModChange (event) {
-    Utils.execPythonMessage("netpyne_geppetto.netParams.synMechParams['" + this.state.currentName + "']['mod'] = '" + event.target.value + "'");
-    this.setState({ synMechMod: event.target.value });
+    const value = event.target.value
+    Utils.execPythonMessage("netpyne_geppetto.netParams.synMechParams['" + this.state.currentName + "']['mod'] = '" + value + "'");
+    this.setState({ synMechMod: value });
   }
 
   render () {
@@ -104,11 +101,9 @@ export default class NetPyNESynapse extends React.Component {
       title={title}
       open={true}
       actions={actions}
-      
+      bodyStyle={{ overflow: 'auto' }}
       style={{ whiteSpace: "pre-wrap" }}>
-      <div style={{ overflow: 'auto' }}>
-        {children}
-      </div>
+      {children}
     </Dialog> : undefined;
 
     if (this.state.synMechMod == '' || this.state.synMechMod == undefined) {
@@ -147,15 +142,16 @@ export default class NetPyNESynapse extends React.Component {
           value = {this.state.currentName}
           disabled={this.renaming}
           className={"netpyneField"}
+          label="Synapse name"
         />
         <br/>
         <NetPyNEField id="netParams.synMechParams.mod" className={"netpyneFieldNoWidth"} noStyle>
-          <SelectField 
+          <Select 
             id={"synapseModSelect"}
             value={this.state.synMechMod}
             onChange={this.handleSynMechModChange}
           >
-          </SelectField>
+          </Select>
         </NetPyNEField>
         {content}
         {dialogPop}
diff --git a/components/definition/synapses/NetPyNESynapses.js b/components/definition/synapses/NetPyNESynapses.js
index cb12924..6cff571 100644
--- a/components/definition/synapses/NetPyNESynapses.js
+++ b/components/definition/synapses/NetPyNESynapses.js
@@ -1,4 +1,5 @@
 import React,{ Component } from 'react';
+import { Card, CardHeader, CardContent } from '@material-ui/core';
 
 import Utils from '../../../Utils';
 import NetPyNESynapse from './NetPyNESynapse';
@@ -6,10 +7,6 @@ import NetPyNEHome from '../../general/NetPyNEHome';
 import NetPyNEAddNew from '../../general/NetPyNEAddNew';
 import NetPyNEThumbnail from '../../general/NetPyNEThumbnail';
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import Button from '@material-ui/core/Button';
 
 export default class NetPyNESynapses extends Component {
@@ -150,10 +147,9 @@ export default class NetPyNESynapses extends Component {
       title={title}
       open={true}
       actions={actions}
+      bodyStyle={{ overflow: 'auto' }}
       style={{ whiteSpace: "pre-wrap" }}>
-      <div style={{ overflow: 'auto' }}>
-        {children}
-      </div>
+      {children}
     </Dialog> : undefined;
 
     var model = this.state.value;
@@ -173,23 +169,30 @@ export default class NetPyNESynapses extends Component {
     }
 
     return (
-      <React.Fragment>
-        <div className={"details"}>
-          {selectedSynapse}
-        </div>
-        <div className={"thumbnails"}>
-          <div className="breadcrumb">
-            <NetPyNEHome
-              selection={this.state.selectedSynapse}
-              handleClick={() => this.setState({ selectedSynapse: undefined })}
-            />
-            <NetPyNEAddNew id={"newSynapseButton"} handleClick={this.handleNewSynapse} />
+      <Card style={{ clear: 'both' }}>
+        <CardHeader
+          title="Synaptic mechanisms"
+          subheader="Define here the synaptic mechanisms available in your network"
+          id={"Synapses"}
+        />
+        <CardContent className={"tabContainer"}>
+          <div className={"details"}>
+            {selectedSynapse}
           </div>
-          <div style={{ clear: "both" }}></div>
-          {Synapses}
-          {dialogPop}
-        </div>
-      </React.Fragment>
+          <div className={"thumbnails"}>
+            <div className="breadcrumb">
+              <NetPyNEHome
+                selection={this.state.selectedSynapse}
+                handleClick={() => this.setState({ selectedSynapse: undefined })}
+              />
+              <NetPyNEAddNew id={"newSynapseButton"} handleClick={this.handleNewSynapse} />
+            </div>
+            <div style={{ clear: "both" }}></div>
+            {Synapses}
+            {dialogPop}
+          </div>
+        </CardContent>
+      </Card>
     );
   }
 }
\ No newline at end of file
diff --git a/components/general/AdapterComponent.js b/components/general/AdapterComponent.js
index fad49d8..1ece263 100644
--- a/components/general/AdapterComponent.js
+++ b/components/general/AdapterComponent.js
@@ -35,8 +35,15 @@ export default class AdapterComponent extends Component {
   handleChildChange (event) {
     // Update State
     var newState = this.state;
+    var value = event.target.value
+    if (value === '') {
+      value = 0
+    } else if (isNaN(parseFloat(value))) {
+      return ''
+    }
+
     newState['lastUpdated'] = event.target.id;
-    newState[event.target.id] = event.target.value ;
+    newState[event.target.id] = value;
     this.setState(newState)
 
     // Call to conversion function
diff --git a/components/general/Checkbox.js b/components/general/Checkbox.js
new file mode 100644
index 0000000..965547c
--- /dev/null
+++ b/components/general/Checkbox.js
@@ -0,0 +1,25 @@
+import React, { Component } from 'react'
+import FormGroup from '@material-ui/core/FormGroup';
+import FormControlLabel from '@material-ui/core/FormControlLabel';
+import MuiCheckbox from '@material-ui/core/Checkbox';
+
+export default class Checkbox extends Component {
+  render () {
+    return (
+      <FormGroup>
+        <FormControlLabel
+          disabled={!!this.props.disabled}
+          label={this.props.label ? this.props.label : ''}
+          control={
+            <MuiCheckbox
+              id={this.props.id}
+              checked={this.props.checked}
+              onChange={this.props.onChange}
+            />
+          }
+        />
+      </FormGroup>
+      
+    )
+  }
+}
diff --git a/components/general/DeleteDialogBox.js b/components/general/DeleteDialogBox.js
index ca97361..f1542b2 100644
--- a/components/general/DeleteDialogBox.js
+++ b/components/general/DeleteDialogBox.js
@@ -8,7 +8,8 @@
 
 import React from 'react';
 import Dialog from '@material-ui/core/Dialog';
-import FlatButton from '@material-ui/core/Button';
+import Button from '@material-ui/core/Button';
+
 import DialogActions from '@material-ui/core/DialogActions';
 import DialogContent from '@material-ui/core/DialogContent';
 import DialogContentText from '@material-ui/core/DialogContentText';
@@ -31,36 +32,29 @@ export default class DeleteDialogBox extends React.Component {
   }
     
   render () {
-    const actions = <React.Fragment>
-      <FlatButton
-        id="confirmCancel"
-        color="primary"
-        onClick={() => this.props.onDialogResponse(false)}
-      >Cancel</FlatButton>
-      <FlatButton
-        id="confirmDeletion"
-        color="primary"
-        keyboardFocused={true}
-        onClick={() => this.props.onDialogResponse(true)}
-      >Confirm</FlatButton>
-    </React.Fragment>;
-    
     return (
-      <div>
-        <Dialog
-          open={this.state.open}
-          onClose={this.handleClose}>
-          <DialogTitle id="alert-dialog-slide-title">{"Delete " + this.props.textForDialog}</DialogTitle>
-          <DialogContent>
-            <DialogContentText id="alert-dialog-slide-description">
-              {"Do you want to remove " + this.props.textForDialog + " ?"}
-            </DialogContentText>
-          </DialogContent>
-          <DialogActions>
-            {actions}
-          </DialogActions>
-        </Dialog>
-      </div>
+      <Dialog
+        open={this.state.open}
+        onClose={this.handleClose}
+      >
+        <DialogTitle>{"Delete " + this.props.textForDialog}</DialogTitle>
+        <DialogContent>
+          <DialogContentText>
+            {"Do you want to remove " + this.props.textForDialog + " ?"}
+          </DialogContentText>
+        </DialogContent>
+        <DialogActions>
+          <Button
+            id="confirmCancel"
+            onClick={() => this.props.onDialogResponse(false)}
+          >Cancel</Button>
+          <Button
+            id="confirmDeletion"
+            color="primary"
+            onClick={() => this.props.onDialogResponse(true)}
+          >Confirm</Button>
+        </DialogActions>
+      </Dialog>
     );
   }
 }
diff --git a/components/general/FileBrowser.js b/components/general/FileBrowser.js
index 8d67e11..06c4f2e 100644
--- a/components/general/FileBrowser.js
+++ b/components/general/FileBrowser.js
@@ -2,14 +2,15 @@ import React from 'react';
 import Tree from 'geppetto-client/js/components/interface/tree/Tree'
 import Utils from '../../Utils';
 import Button from '@material-ui/core/Button';
-import IconButton from '@material-ui/core/IconButton';
-import FontIcon from '@material-ui/core/Icon';
-import { walk, changeNodeAtPath } from 'react-sortable-tree';
+import { changeNodeAtPath } from 'react-sortable-tree';
 import Dialog from '@material-ui/core/Dialog';
+
 import DialogActions from '@material-ui/core/DialogActions';
 import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
+
+import IconButton from '@material-ui/core/IconButton';
+import Icon from '@material-ui/core/Icon';
+import { walk } from 'react-sortable-tree';
 
 export default class FileBrowser extends React.Component {
 
@@ -34,11 +35,11 @@ export default class FileBrowser extends React.Component {
           rowInfo.node.children = dirList;
           rowInfo.node.expanded = true;
           rowInfo.node.load = true;
-          var newTreeData = changeNodeAtPath({
-            treeData: treeData,
-            path: rowInfo.path,
-            newNode: rowInfo.node,
-            getNodeKey: ({ treeIndex }) => treeIndex
+          var newTreeData = changeNodeAtPath({ 
+            treeData: treeData, 
+            path: rowInfo.path, 
+            newNode: rowInfo.node, 
+            getNodeKey: ({ treeIndex }) => treeIndex 
           });
         } else {
           var newTreeData = dirList;
@@ -61,11 +62,6 @@ export default class FileBrowser extends React.Component {
     }
   }
 
-  componentDidUpdate (prevProps, prevState) {
-    if (prevProps.open == false && this.props.open) {
-      this.getDirList([]);
-    }
-  }
   getSelectedFiles () {
     const nodes = {}
     if (!this.refs.tree) {
@@ -85,10 +81,15 @@ export default class FileBrowser extends React.Component {
     return nodes
   }
 
+  componentDidUpdate (prevProps, prevState) {
+    if (prevProps.open == false && this.props.open) {
+      this.getDirList([]);
+    }
+  }
 
   handleMoveUp (reset = false) {
     var path = this.refs.tree.state.treeData[0].path.split("/").slice(0, -2).join('/') || '/'
-
+    
     if (reset) {
       path = window.currentFolder
     }
@@ -114,69 +115,58 @@ export default class FileBrowser extends React.Component {
     this.props.onRequestClose()
   }
 
+
   render () {
     const actions = [
       <Button
-        label={'CANCEL'}
-        key="CANCEL"
-        onClick={event => this.props.onClose()}
+        key='cancel'
+        onClick={event => this.onCancelFileBrowser()}
         style={{ marginRight: 16 }}
-      />,
+      >cancel</Button>,
       <Button
         id="browserAccept"
+        key="select"
         variant="contained"
-        key="SELECT"
         color="primary"
-        label={'SELECT'}
-        onClick={event => this.props.onClose(this.state.selection)}
-        disabled={!this.state.selection}
-      />
+        onClick={event => {
+          this.props.onRequestClose(this.props.toggleMode ? this.getSelectedFiles() : this.state.selection )
+        }}
+        disabled={this.disableSelectButton()}
+      >select</Button>
     ];
-
+        
     var selectMessage = this.props.exploreOnlyDirs ? "Select a folder. " : "Select a file. ";
     return (
-            
       <Dialog
         open={this.props.open}
-        onClose={this.props.onClose}
+        onClose={() => this.props.onRequestClose()}
       >
-
-
-        <DialogTitle id="alert-dialog-title">{selectMessage}</DialogTitle>
-        <DialogContent style={{ overflow: 'auto' }}>
-
-          <DialogContentText id="alert-dialog-description">
-            <div style={{ marginBottom: '15px' }}>
-              <b>{selectMessage}</b>
-      These paths are relative to:<br/>
-              <div className="flex-row fx-center ">
-                <span className="code-p w-80">{this.currentFolder || window.currentFolder}</span>
-                <IconButton
-                  id="file-browser-level-up"
-                  disableTouchRipple
-                  className='simple-icon mrg-2'
-                  onClick={() => {
-                    this.handleMoveUp()
-                  }}
-                  tooltip='Enclosing Folder'
-                  tooltipPosition={'top-right'}
-                >
-                  <FontIcon className={'fa fa-level-up listIcon'} />
-                </IconButton>
-                <IconButton
-                  disableTouchRipple
-                  className='simple-icon mrg-2'
-                  onClick={() => {
-                    this.handleMoveUp(true)
-                  }}
-                  tooltip='Home folder'
-                  tooltipPosition={'top-right'}
-                >
-                  <FontIcon className={'fa fa-home listIcon'} />
-                </IconButton>
-              </div>
+        <DialogContent>
+          <div style={{ marginBottom: '15px' }}>
+            <b>{selectMessage}</b>
+            These paths are relative to:<br/>
+            <div className="flex-row fx-center ">
+              <span className="code-p w-80">{this.currentFolder || window.currentFolder}</span>
+              <IconButton
+                id="file-browser-level-up"
+                disableTouchRipple
+                className='simple-icon mrg-2'
+                onClick={() => this.handleMoveUp()} 
+                tooltip-data='Enclosing Folder'
+              >
+                <Icon className={'fa fa-level-up listIcon'} />
+              </IconButton>
+              <IconButton
+                disableTouchRipple
+                className='simple-icon mrg-2'
+                onClick={() => this.handleMoveUp(true)} 
+                tooltip-data='Home folder'
+              >
+                <Icon className={'fa fa-home listIcon'} />
+              </IconButton>
             </div>
-          </DialogContentText>
+            
+          </div>
           < Tree
             id="TreeContainerCutting"
             style={{ width: "100%", height: "400px", float: 'left' }}
@@ -189,10 +179,8 @@ export default class FileBrowser extends React.Component {
           />
         </DialogContent>
         <DialogActions>
-          { actions }
+          {actions}
         </DialogActions>
-
-
       </Dialog>
     )
   }
diff --git a/components/general/List.js b/components/general/List.js
index 1707d8f..bc47488 100644
--- a/components/general/List.js
+++ b/components/general/List.js
@@ -1,7 +1,7 @@
 import React, { Component } from 'react';
 import TextField from '@material-ui/core/TextField';
 import IconButton from '@material-ui/core/IconButton';
-import FontIcon from '@material-ui/core/Icon';
+import Icon from '@material-ui/core/Icon';
 
 /**
  * Generic List/Dict Component
@@ -207,22 +207,26 @@ export default class ListComponent extends Component {
       } else {
         var value = this.state.children[key];
       }
-      return <div key={key} style={this.props.realType != 'dict(dict())' ? { marginRight: 30, float: 'left' } : { marginRight: 30 }}>
-        <TextField
-          value={value}
-          id={this.props.id + index}
-          style={{ width: value.length * 10, color: 'rgb(84, 58, 115)' }}
-          disabled
-        />
-        <IconButton
-          id={this.props.id + index + "RemoveButton"}
-          className={'listButtonSmall'}
-          onClick={() => this.removeChild(key)}
-          tooltip='Remove item from the list'
+      return (
+        <div 
+          key={key} 
+          style={this.props.realType != 'dict(dict())' ? { marginRight: 30, float: 'left' } : { marginRight: 30 }}
         >
-          <FontIcon className={'fa fa-minus-circle listIcon'} />
-        </IconButton>
-      </div>
+          <TextField
+            value={value}
+            id={this.props.id + index}
+            disabled
+          />
+          <IconButton
+            id={this.props.id + index + "RemoveButton"}
+            className={'listButtonSmall'}
+            onClick={() => this.removeChild(key)}
+            tooltip-data='Remove item from the list'
+          >
+            <Icon className={'fa fa-minus-circle listIcon'} />
+          </IconButton>
+        </div>
+      )
     });
 
     return (
@@ -234,18 +238,19 @@ export default class ListComponent extends Component {
           onKeyPress={e => e.key === 'Enter' ? this.addChild() : null }
           value={this.state.newItemValue}
           style={{ width: '100%' }}
-          error={Boolean(this.state.newItemErrorText)}
           helperText={this.state.newItemErrorText}
         />
-        {!this.state.newItemErrorText
-                    && <IconButton
-                      id={this.props.id + "AddButton"}
-                      className={'listButtonLarge'}
-                      onClick={this.addChild}
-                      tooltip='Add item to the list'
-                    >
-                      <FontIcon style={{ width: 25, height: 25 }} className={'fa fa-plus-circle listIcon'} />
-                    </IconButton>
+        {!this.state.newItemErrorText 
+          && (
+            <IconButton
+              id={this.props.id + "AddButton"}
+              className={'listButtonLarge'}
+              onClick={this.addChild}
+              data-tooltip='Add item to the list'
+            >
+              <Icon className={'fa fa-plus-circle listIcon'} />
+            </IconButton>
+          )
         }
 
         {childrenWithExtraProp.length > 0 && <div style={{ marginTop: '15px', marginLeft: '50px', paddingRight: '15px', padding: '0px 5px', float: 'left' }}>{childrenWithExtraProp}</div>}
diff --git a/components/general/NetPyNEAddNew.js b/components/general/NetPyNEAddNew.js
index 786cd03..03c0eb5 100644
--- a/components/general/NetPyNEAddNew.js
+++ b/components/general/NetPyNEAddNew.js
@@ -20,7 +20,6 @@ export default class NetPyNEAddNew extends React.Component {
     return (
       <FloatingActionButton 
         id={this.props.id}
-        color="primary"
         style={styles.add}
         onClick={this.handleClick}
         data-tooltip="Create rule"
@@ -35,6 +34,7 @@ export default class NetPyNEAddNew extends React.Component {
 
 const styles = {
   add: {
+    marginTop: "15px",
     float: "left",
     textAlign: 'center'
   }
diff --git a/components/general/NetPyNECoordsRange.js b/components/general/NetPyNECoordsRange.js
index 9ec3866..9a76884 100644
--- a/components/general/NetPyNECoordsRange.js
+++ b/components/general/NetPyNECoordsRange.js
@@ -1,7 +1,7 @@
 import React, { Component } from 'react';
 import MenuItem from '@material-ui/core/MenuItem';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../base/SelectField';
+import SelectField from './Select';
 import Utils from '../../Utils';
 import NetPyNEField from './NetPyNEField';
 import AdapterComponent from './AdapterComponent';
@@ -13,7 +13,7 @@ export default class NetPyNECoordsRange extends Component {
  
   constructor (props) {
     super(props);
-    this.state = { rangeType: undefined, };
+    this.state = { rangeType: undefined };
 
     this._isMounted = false;
   }
@@ -96,8 +96,8 @@ export default class NetPyNECoordsRange extends Component {
         <NetPyNEField id={meta} >
           <SelectField
             id={this.props.id + 'Select'}
-            label={"Range type"}
-            value={this.state.rangeType}
+            label="Range type"
+            value={this.state.rangeType || ''}
             onChange={event => this.setState({ rangeType: event.target.value })}
           >
             {this.createMenuItems()}
diff --git a/components/general/NetPyNEField.js b/components/general/NetPyNEField.js
index cb2752a..7c2b582 100644
--- a/components/general/NetPyNEField.js
+++ b/components/general/NetPyNEField.js
@@ -1,13 +1,14 @@
 import React, { Component } from 'react';
 import Dialog from '@material-ui/core/Dialog';
+import Button from '@material-ui/core/Button';
+import MenuItem from '@material-ui/core/MenuItem';
+import Utils from '../../Utils';
+
+
 import DialogActions from '@material-ui/core/DialogActions';
 import DialogContent from '@material-ui/core/DialogContent';
 import DialogContentText from '@material-ui/core/DialogContentText';
 import DialogTitle from '@material-ui/core/DialogTitle';
-import FlatButton from '@material-ui/core/Button';
-import MenuItem from '@material-ui/core/MenuItem';
-import FormControlLabel from '@material-ui/core/FormControlLabel';
-import Utils from '../../Utils';
 
 export default class NetPyNEField extends Component {
   constructor (props) {
@@ -63,34 +64,46 @@ export default class NetPyNEField extends Component {
     render () {
       var help = Utils.getMetadataField(this.props.id, "help");
       if (help != undefined && help != '') {
-        var helpComponent = <div className="helpIcon" ><i className="fa fa-question" aria-hidden="true" onClick={() => this.handleOpenHelp(help)} ></i>
-          <Dialog
-            open={this.state.openHelp}
-            onClose={this.handleCloseHelp}
-          >
-
-            <DialogTitle id="alert-dialog-title">NetPyNE Help</DialogTitle>
-            <DialogContent>
-              <DialogContentText id="alert-dialog-description">
-                {this.state.helpText}
-              </DialogContentText>
-            </DialogContent>
-            <DialogActions>
-              <FlatButton
-                label=""
-                color="primary"
-                keyboardFocused={true}
-                onClick={this.handleCloseHelp}
-              >Got it</FlatButton>
-            </DialogActions>
-            
-          </Dialog>
-        </div>
+        var helpComponent = (
+          <div className="helpIcon">
+            <i 
+              className="fa fa-question"
+              aria-hidden="true"
+              onClick={() => this.handleOpenHelp(help)}
+            />
+            <Dialog
+              open={this.state.openHelp}
+              onClose={() => this.setState({ openHelp: false })}
+            >
+              <DialogTitle>NetPyNE Help</DialogTitle>
+              <DialogContent>
+                <DialogContentText>
+                  {this.state.helpText}
+                </DialogContentText>
+              </DialogContent>
+              <DialogActions>
+                <Button
+                  autoFocus
+                  color="primary"
+                  onClick={() => this.setState({ openHelp: false })}
+                >
+                  Got it
+                </Button>
+              </DialogActions>
+            </Dialog>
+          </div>
+        )
       }
 
       const childWithProp = React.Children.map(this.props.children, child => {
         var extraProps = {}
-        if (["SelectField", "TextField", "Checkbox", "PythonControlledControlWithPythonDataFetch"].indexOf(child.type.name) == -1) {
+        var name = child.type.name ? child.type.name : child.type.muiName
+        if (name === undefined) {
+          if (child.type.options) {
+            name = child.type.options.name
+          }
+        }
+        if (["Select", "TextField", "Checkbox", "MuiTextField", "PythonControlledControlWithPythonDataFetch"].indexOf(name) == -1) {
           extraProps['validate'] = this.setErrorMessage;
           extraProps['prePythonSyncProcessing'] = this.prePythonSyncProcessing;
 
@@ -100,24 +113,21 @@ export default class NetPyNEField extends Component {
           }
         }
             
-        var label = Utils.getMetadataField(this.props.id, "label");
-        extraProps['label'] = label;
+        var floatingLabelText = Utils.getMetadataField(this.props.id, "label");
+        extraProps['label'] = floatingLabelText;
 
         var type = Utils.getHTMLType(this.props.id);
         if (type != '') {
           extraProps['type'] = type;
         }
 
-        if (child.type.name == "PythonControlledControl") {
+        if (name == "PythonControlledControl") {
           var realType = Utils.getMetadataField(this.props.id, "type");
           extraProps['realType'] = realType;
         }
 
         var hintText = Utils.getMetadataField(this.props.id, "hintText");
-        if (hintText != '') {
-          extraProps['label'] = hintText;
-        }
-
+        
         var default_value = Utils.getMetadataField(this.props.id, "default");
         if (default_value != '') {
           extraProps['default'] = default_value;
@@ -135,17 +145,8 @@ export default class NetPyNEField extends Component {
             </MenuItem>
           ));
         }
-        if (extraProps.realType == 'bool') {
-          return <FormControlLabel
-            control={
-              child
-            }
-            label={label}
-          />
-        } else {
-          return React.cloneElement(child, extraProps)
-        }
-        
+
+        return React.cloneElement(child, extraProps);
       });
 
       var classes = [];
diff --git a/components/general/NetPyNEHome.js b/components/general/NetPyNEHome.js
index e0f3273..a38f3c1 100644
--- a/components/general/NetPyNEHome.js
+++ b/components/general/NetPyNEHome.js
@@ -11,7 +11,7 @@ export default ({ handleClick, selection }) => (
     <IconButton
       style={styles.home.container}
       data-tooltip={selection ? "Unselect" : undefined}
-      color="secondary"
+      color='secondary'
       onClick={ () => handleClick()}
     >
       <FontIcon className="fa fa-home customHome"/>
diff --git a/components/general/NetPyNEThumbnail.js b/components/general/NetPyNEThumbnail.js
index c4966c6..bf6eff0 100644
--- a/components/general/NetPyNEThumbnail.js
+++ b/components/general/NetPyNEThumbnail.js
@@ -1,6 +1,7 @@
 import React, { Component } from 'react';
-import FloatingActionButton from '@material-ui/core/Fab';
+import Fab from '@material-ui/core/Fab';
 import DeleteDialogBox from './DeleteDialogBox';
+import Icon from '@material-ui/core/Icon';
 
 export default class NetPyNEThumbnail extends React.Component {
 
@@ -46,20 +47,17 @@ export default class NetPyNEThumbnail extends React.Component {
       }
     }
     return (
-      <div className="thumb">
-        <FloatingActionButton 
+      <div>
+        <Fab 
           id={name}
           onMouseEnter={() => this.setState({ isHovered: true })}
           onMouseLeave={() => this.setState({ isHovered: false })}
           data-tooltip={isHovered && name.length > 14 ? name : undefined}
-          className={"actionButton " + (selected ? "selectedActionButton" : "") } 
+          className={"actionButton " + (selected ? "selectedActionButton" : "")} 
           onClick={() => this.handleClick()}
-          color={selected ? "secondary" : "primary"}
         >
-          {(this.state.isHovered && selected) 
-            ? <i className="fa fa-trash-o" /> 
-            : label}
-        </FloatingActionButton>
+          {(this.state.isHovered && selected) ? <Icon className="fa fa-trash-o"/> : label}}
+        </Fab>
         <DeleteDialogBox
           open={dialogOpen}
           onDialogResponse={this.handleDialogBox}
diff --git a/components/general/Select.js b/components/general/Select.js
new file mode 100644
index 0000000..c96b6ce
--- /dev/null
+++ b/components/general/Select.js
@@ -0,0 +1,24 @@
+import React, { Component } from 'react'
+import InputLabel from '@material-ui/core/InputLabel';
+import FormControl from '@material-ui/core/FormControl';
+import MuiSelect from '@material-ui/core/Select';
+
+export default class Select extends Component {
+  render () {
+    return (
+      <FormControl >
+        <InputLabel>{this.props.label}</InputLabel>
+        <MuiSelect
+          id={this.props.id}
+          value={this.props.value}
+          onChange={this.props.onChange}
+          multiple={!!this.props.multiple}
+        >
+          {this.props.children}
+        </MuiSelect>
+
+      </FormControl>
+      
+    )
+  }
+}
diff --git a/components/general/Slider.js b/components/general/Slider.js
index 78f5149..7d160c4 100644
--- a/components/general/Slider.js
+++ b/components/general/Slider.js
@@ -19,10 +19,10 @@ export default class NetPyNESlider extends Component {
     }
   }
 
-    handleSlider = event => {
-      this.setState({ value: event.target.value });
+    handleSlider = (event, value) => {
+      this.setState({ value: value });
 
-      this.props.onChange(event, null, event.target.value );
+      this.props.onChange(event, null, value);
     };
 
     render () {
diff --git a/components/instantiation/NetPyNEInstantiated.js b/components/instantiation/NetPyNEInstantiated.js
index cedddae..258e76d 100644
--- a/components/instantiation/NetPyNEInstantiated.js
+++ b/components/instantiation/NetPyNEInstantiated.js
@@ -1,10 +1,6 @@
 import React from 'react';
 import Dialog from '@material-ui/core/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
-import FlatButton from '@material-ui/core/Button';
+import Button from '@material-ui/core/Button';
 import Canvas from 'geppetto-client/js/components/interface/3dCanvas/Canvas';
 import ControlPanel from 'geppetto-client/js/components/interface/controlPanel/controlpanel';
 import IconButton from 'geppetto-client/js/components/controls/iconButton/IconButton';
@@ -13,6 +9,12 @@ import Menu from '@material-ui/core/Menu';
 import MenuItem from '@material-ui/core/MenuItem';
 import Utils from '../../Utils';
 
+
+import DialogActions from '@material-ui/core/DialogActions';
+import DialogContent from '@material-ui/core/DialogContent';
+import DialogContentText from '@material-ui/core/DialogContentText';
+import DialogTitle from '@material-ui/core/DialogTitle';
+
 const styles = {
   modal: {
     position: 'absolute !important',
@@ -40,7 +42,7 @@ const styles = {
   controlpanelBtn: {
     position: 'absolute', 
     left: 34, 
-    top: 16 
+    top: 280 
   },
   plotBtn: {
     position: 'absolute', 
@@ -195,19 +197,6 @@ export default class NetPyNEInstantiated extends React.Component {
     }
 
     render () {
-      var controls;
-      if (this.props.page == 'simulate') {
-        controls = (
-          <Menu>
-            {plots.map((plot, index) => <MenuItem id={plot.id} key={index} style={styles.menuItem} innerDivStyle={styles.menuItemDiv} onClick={() => {
-              this.plotFigure(plot.plotName, plot.plotMethod, plot.plotType)
-            }} >
-              {plot.primaryText}
-            </MenuItem>)}
-          </Menu>
-        );
-      }
-
       return (
         <div id="instantiatedContainer" style={{ ...styles.instantiatedContainer, zIndex: this.state.bringItToFront }}>
           <Canvas
@@ -219,7 +208,7 @@ export default class NetPyNEInstantiated extends React.Component {
           />
           <div id="controlpanel" style={{ top: 0 }}>
             <ControlPanel
-              icon={"styles.Modal"}
+              icon={styles.Modal}
               useBuiltInFilters={false}
             >
             </ControlPanel>
@@ -238,36 +227,42 @@ export default class NetPyNEInstantiated extends React.Component {
               icon={"fa-bar-chart"}
               id="PlotButton"
             />
-            <Popover
+            <Menu
               open={this.state.plotButtonOpen}
-              anchorEl={this.state.anchorEl}
-              anchorOrigin={{ horizontal: 'left', vertical: 'bottom' }}
-              transformOrigin={{ horizontal: 'left', vertical: 'top' }}
               onClose={this.handleRequestClose}
+              anchorEl={this.state.anchorEl}
             >
-              {controls}
-            </Popover>
+              {plots.map((plot, index) => (
+                <MenuItem 
+                  id={plot.id} 
+                  key={index}
+                  style={styles.menuItem}
+                  onClick={() => this.plotFigure(plot.plotName, plot.plotMethod, plot.plotType)}
+                >
+                  {plot.primaryText}
+                </MenuItem>
+              ))}
+            </Menu>
           </div>
+
           <Dialog
-            style={{ whiteSpace: "pre-wrap" }}
             open={this.state.openDialog}
             onClose={this.handleCloseDialog}
+            style={{ whiteSpace: "pre-wrap" }}
           >
-            <DialogTitle id="alert-dialog-title">{this.state.dialogTitle}</DialogTitle>
-            <DialogContent style={{ overflow: 'auto' }}>
-              <DialogContentText id="alert-dialog-description">
+            <DialogTitle>{this.state.dialogTitle}</DialogTitle>
+            <DialogContent>
+              <DialogContentText>
                 {this.state.dialogMessage}
               </DialogContentText>
             </DialogContent>
             <DialogActions>
-              <FlatButton
+              <Button
                 id="netPyneDialog"
                 color="primary"
-                keyboardFocused={true}
                 onClick={this.handleCloseDialog}
-              >OK</FlatButton>
+              >Ok</Button>
             </DialogActions>
-            
           </Dialog>
         </div>
 
diff --git a/components/settings/NetPyNETabs.js b/components/settings/NetPyNETabs.js
index 3c80a0d..f6a485a 100644
--- a/components/settings/NetPyNETabs.js
+++ b/components/settings/NetPyNETabs.js
@@ -2,7 +2,7 @@ import React from 'react';
 import MenuItem from '@material-ui/core/MenuItem';
 import Menu from '@material-ui/core/Menu';
 import IconButton from '@material-ui/core/IconButton';
-import FlatButton from '@material-ui/core/Button';
+import Button from '@material-ui/core/Button';
 import NavigationExpandMoreIcon from '@material-ui/icons/ExpandMore';
 
 
@@ -26,8 +26,24 @@ export default class NetPyNETabs extends React.Component {
   }
 
   handleTransitionOptionsChange (e, v) {
-    this.setState({ simulateTabLabel: v, anchorEl: null });
-    this.props.handleTransitionOptionsChange(e, v)
+    this.props.handleTransitionOptionsChange(e.target.innerText)
+    this.setState({ simulateTabLabel: e.target.innerText, anchorEl: null });
+  }
+
+  getLabelStyle (label) {
+    var style = { color: 'white', fontWeight: 400 }
+    if (label == this.state.label) {
+      style['fontWeight'] = 600;
+    }
+    return style;
+  }
+
+  getBackgroundStyle (label) {
+    var color = 'primary';
+    if (label == this.state.label || (label == 'simulate' && this.state.transitionOptionsHovered)) {
+      color = 'secondary';
+    }
+    return color;
   }
 
   handleClick = event => {
@@ -41,32 +57,62 @@ export default class NetPyNETabs extends React.Component {
   render () {
 
     return <div style={{ width: '100%', alignItems: 'center', display: 'flex' }}>
-      <FlatButton variant="contained" disableElevation color="primary" id={"defineNetwork"} onClick={() => this.props.handleChange('define')} style={{ flex: 1, borderRadius: 10, marginLeft: 5 }} >
-      Define your Network
-      </FlatButton>
-      <FlatButton variant="contained" disableElevation color="primary" id={"simulateNetwork"} onClick={() => this.props.handleChange('simulate')} style={{ flex: 1, borderRadius: 10, marginLeft: 5 }} >
-        { this.state.simulateTabLabel }
+      <Button 
+        id={"defineNetwork"} 
+        onClick={() => this.props.handleChange('define')} 
+        style={{ flex: 1, borderRadius: 10, marginLeft: 5, ...this.getLabelStyle('define') }} 
+        color={this.getBackgroundStyle('define')} 
+      >
+        {'Define your Network'}
+      </Button>
 
-      </FlatButton>
-      <IconButton onClick={this.handleClick} 
+      <Button 
+        id={"simulateNetwork"} 
+        onClick={() => this.props.handleChange('simulate')} 
+        style={{ flex: 1, borderRadius: 10, marginLeft: 5, ...this.getLabelStyle('simulate') }} 
+        color={this.getBackgroundStyle('simulate')} 
+      >
+        {this.state.simulateTabLabel}
+      </Button>
+      <IconButton 
+        onClick={this.handleClick} 
+        id="transit"
         onMouseEnter={() => this.setState({ transitionOptionsHovered: true })} 
         onMouseLeave={() => this.setState({ transitionOptionsHovered: false })}
+        style={{ color: '#ffffff' }}
       >
-        <NavigationExpandMoreIcon style={{ color: "white" }} />
+        <NavigationExpandMoreIcon />
       </IconButton>
       
       <Menu
         id="transit"
         value={this.state.simulateTabLabel}
-        anchorEl={this.state.anchorEl}
         open={Boolean(this.state.anchorEl)}
+        anchorEl={this.state.anchorEl}
         style={{ position: 'absolute', top: '6px', right: '28px' }}
-        
         onClose={this.handleClose}
       >
-        <MenuItem id="transitCreate" onClick={e => this.handleTransitionOptionsChange(e, "Create Network")} >Create Network</MenuItem>
-        <MenuItem id="transitSimulate" onClick={e => this.handleTransitionOptionsChange(e, "Create and Simulate Network")} >Create and Simulate Network</MenuItem>
-        <MenuItem id="transitExplore" onClick={e => this.handleTransitionOptionsChange(e, "Explore Existing Network")}>Explore Existing Network</MenuItem>
+        <MenuItem 
+          id="transitCreate"
+          value="Create Network"
+          onClick={this.handleTransitionOptionsChange}
+        >
+          Create Network
+        </MenuItem>
+        <MenuItem 
+          id="transitSimulate" 
+          value="Create and Simulate Network"
+          onClick={this.handleTransitionOptionsChange}
+        >
+          Create and Simulate Network
+        </MenuItem>
+        <MenuItem 
+          id="transitExplore" 
+          value="Explore Existing Network"
+          onClick={this.handleTransitionOptionsChange}
+        >
+          Explore Existing Network
+        </MenuItem>
       </Menu>
     </div>
   }
diff --git a/components/settings/NetPyNEToolBar.js b/components/settings/NetPyNEToolBar.js
index e49a818..6d1ae1b 100644
--- a/components/settings/NetPyNEToolBar.js
+++ b/components/settings/NetPyNEToolBar.js
@@ -1,23 +1,22 @@
 import React from 'react';
 import SvgIcon from '@material-ui/core/SvgIcon';
-import FontIcon from '@material-ui/core/Icon';
+import Icon from '@material-ui/core/Icon';
 import Drawer from '@material-ui/core/Drawer';
+import MenuItem from '@material-ui/core/MenuItem';
 import IconButton from '@material-ui/core/IconButton';
 import NavigationMenu from '@material-ui/icons/Menu';
 import Divider from '@material-ui/core/Divider';
-import List from '@material-ui/core/List';
-import ListItem from '@material-ui/core/ListItem';
-import ListItemIcon from '@material-ui/core/ListItemIcon';
-import ListItemText from '@material-ui/core/ListItemText';
-import Snackbar from '@material-ui/core/Snackbar';
 import LoadFile from './actions/LoadFile';
 import SaveFile from './actions/SaveFile';
 import NewModel from './actions/NewModel';
 import ImportExportHLS from './actions/ImportExportHLS';
-import UploadDownloadFiles from './actions/UploadDownloadFiles';
 import ImportCellParams from './actions/ImportCellParams'
 import NetPyNElogo from '../../components/general/NetPyNe_logo.png'
+import ListItemIcon from '@material-ui/core/ListItemIcon';
+import ListItemText from '@material-ui/core/ListItemText';
 
+import Snackbar from '@material-ui/core/Snackbar';
+import UploadDownloadFiles from './actions/UploadDownloadFiles';
 
 const ExportIcon = props => <SvgIcon {...props}><svg viewBox='0 0 750 750'><path d='M384 121.9c0-6.3-2.5-12.4-7-16.9L279.1 7c-4.5-4.5-10.6-7-17-7H256v128h128v-6.1zM192 336v-32c0-8.84 7.16-16 16-16h176V160H248c-13.2 0-24-10.8-24-24V0H24C10.7 0 0 10.7 0 24v464c0 13.3 10.7 24 24 24h336c13.3 0 24-10.7 24-24V352H208c-8.84 0-16-7.16-16-16zm379.05-28.02l-95.7-96.43c-10.06-10.14-27.36-3.01-27.36 11.27V288H384v64h63.99v65.18c0 14.28 17.29 21.41 27.36 11.27l95.7-96.42c6.6-6.66 6.6-17.4 0-24.05z'></path></svg></SvgIcon>;
 const ImportIcon = props => <SvgIcon {...props}><svg viewBox='0 0 750 750'><path d='M16 288c-8.84 0-16 7.16-16 16v32c0 8.84 7.16 16 16 16h112v-64H16zm336-152V0H152c-13.3 0-24 10.7-24 24v264h127.99v-65.18c0-14.28 17.29-21.41 27.36-11.27l95.7 96.43c6.6 6.65 6.6 17.39 0 24.04l-95.7 96.42c-10.06 10.14-27.36 3.01-27.36-11.27V352H128v136c0 13.3 10.7 24 24 24h336c13.3 0 24-10.7 24-24V160H376c-13.2 0-24-10.8-24-24zm153-31L407.1 7c-4.5-4.5-10.6-7-17-7H384v128h128v-6.1c0-6.3-2.5-12.4-7-16.9z'></path></svg></SvgIcon>;
@@ -28,20 +27,20 @@ export default class NetPyNEToolBar extends React.Component {
     super(props);
     this.state = {
       openDialogBox: false,
-      openSnackBar: false,
       open: false,
+      openSnackBar: false,
       action: null
     }
     this.snackBarMessage = ""
   }
 
-  handleListItemClick = action => {
-    this.setState({ action:action, openDialogBox:true, open: false })
+  handleMenuItemClick = action => {
+    this.setState({ action:action, openDialogBox:true, open: false })   
   }
 
   handleOpenSnackBar (message) {
     this.snackBarMessage = message
-    this.setState({ openSnackBar: true })
+    this.setState({ openSnackBar: true }) 
   }
 
   render () {
@@ -51,28 +50,28 @@ export default class NetPyNEToolBar extends React.Component {
       case 'Load':
         var content = <LoadFile
           open={this.state.openDialogBox}
-          onClose={() => this.setState({ openDialogBox: false })}
+          onRequestClose={() => this.setState({ openDialogBox: false })}
           changeTab={this.props.changeTab}
         />
         break;
       case 'Save':
         var content = <SaveFile
-          open={this.state.openDialogBox}
-          onClose={() => this.setState({ openDialogBox: false })}
+          open={this.state.openDialogBox}    
+          onRequestClose={() => this.setState({ openDialogBox: false })}
           changeTab={this.props.changeTab}
         />
         break;
       case 'ImportHLS':
-        var content = <ImportExportHLS
+        var content = <ImportExportHLS 
           open={this.state.openDialogBox}
-          onClose={() => this.setState({ openDialogBox: false })}
+          onRequestClose={() => this.setState({ openDialogBox: false })}
           changeTab={this.props.changeTab}
           mode ={"IMPORT"}/>
         break;
       case 'ExportHLS':
-        var content = <ImportExportHLS
+        var content = <ImportExportHLS 
           open={this.state.openDialogBox}
-          onClose={() => this.setState({ openDialogBox: false })}
+          onRequestClose={() => this.setState({ openDialogBox: false })}
           changeTab={this.props.changeTab}
           mode ={"EXPORT"}
         />
@@ -80,13 +79,13 @@ export default class NetPyNEToolBar extends React.Component {
       case 'ImportCellTemplate':
         var content = <ImportCellParams
           open={this.state.openDialogBox}
-          onClose={() => this.setState({ openDialogBox: false })}
+          onRequestClose={() => this.setState({ openDialogBox: false })}
         />
         break;
       case 'NewModel':
         var content = <NewModel
           open={this.state.openDialogBox}
-          onClose={() => this.setState({ openDialogBox: false })}
+          onRequestClose={() => this.setState({ openDialogBox: false })}
           changeTab={this.props.changeTab}
         />
         break;
@@ -94,17 +93,15 @@ export default class NetPyNEToolBar extends React.Component {
         var content = <UploadDownloadFiles
           open={this.state.openDialogBox}
           onRequestClose={() => this.setState({ openDialogBox: false })}
-          changeTab={this.props.changeTab}
           openSnackBar={message => {
             this.handleOpenSnackBar(message)
           } }
           mode ={"UPLOAD"}/>
         break;
       case 'DownloadFiles':
-        var content = <UploadDownloadFiles
+        var content = <UploadDownloadFiles 
           open={this.state.openDialogBox}
           onRequestClose={() => this.setState({ openDialogBox: false })}
-          changeTab={this.props.changeTab}
           openSnackBar={message => {
             this.handleOpenSnackBar(message)
           } }
@@ -121,56 +118,99 @@ export default class NetPyNEToolBar extends React.Component {
         style={{ width: 40, height: 40, borderRadius: 25, overflow: 'hidden' }}
         onClick={() => this.setState({ open: !this.state.open })}
       >
-        <NavigationMenu style={{ color: "white" }} />
+        <NavigationMenu />
       </IconButton>
       <Drawer
+        width={265}
         open={this.state.open}
-        onClose={e => this.setState({ open: false })}
+        onClose={open => this.setState({ open: false })}
       >
         <div id="logoBackground">
           <img style={{ marginLeft: 25, marginTop: 5, marginBottom: 0, width: 190 }} src={NetPyNElogo} />
           <p style={{ fontSize:10, textAlign:"right", marginRight: 3, marginTop: -10, marginBottom: 0, color:"#543a73" }}>GUI Version 0.5.2</p>
         </div>
         <Divider />
-        <List>
+        <MenuItem 
+          id="appBarNew" 
+          onClick={() => this.handleMenuItemClick('NewModel')} 
+        >
+          <ListItemIcon>
+            <Icon color='primary' className='fa fa-plus' />
+          </ListItemIcon>
+          <ListItemText>New</ListItemText>
+        </MenuItem>
+        <MenuItem 
+          id="appBarOpen" 
+          onClick={() => this.handleMenuItemClick('Load')} 
+        >
+          <ListItemIcon>
+            <Icon color='primary' className='fa fa-folder-open-o' />
+          </ListItemIcon>
+          <ListItemText>Open...</ListItemText>
+        </MenuItem>
+        <MenuItem 
+          id="appBarSave" 
+          onClick={() => this.handleMenuItemClick('Save')} 
+        >
+          <ListItemIcon>
+            <Icon color='primary' className='fa fa-download' />
+          </ListItemIcon>
+          <ListItemText>Save as...</ListItemText>
+        </MenuItem>
+        <MenuItem 
+          id="appBarImportHLS"
+          onClick={() => this.handleMenuItemClick('ImportHLS')}
+        >
+          <ListItemIcon>
+            <ImportIcon color='primary'/>
+          </ListItemIcon>
+          <ListItemText>Import...</ListItemText>
+        </MenuItem>
+        <MenuItem 
+          id="appBarExportHLS" 
+          onClick={() => this.handleMenuItemClick('ExportHLS')}
+        >
+          <ListItemIcon>
+            <ExportIcon color='primary'/>
+          </ListItemIcon>
+          <ListItemText>Export...</ListItemText>
+        </MenuItem>
+        <MenuItem 
+          id="appBarImportCellTemplate" 
+          onClick={() => this.handleMenuItemClick('ImportCellTemplate')} 
+        >
+          <ListItemIcon>
+            <CellTemplateIcon color='primary'/>
+          </ListItemIcon>
+          <ListItemText>Import Cell Template...</ListItemText>
+        </MenuItem>
 
-        </List>
-        <ListItem id="appBarNew" onClick={() => this.handleListItemClick('NewModel')} >
-          <ListItemIcon><FontIcon color="primary" className='fa fa-plus' /></ListItemIcon>
-          <ListItemText primary="New" />
-        </ListItem>
-        <ListItem id="appBarOpen" onClick={() => this.handleListItemClick('Load')} >
-          <ListItemIcon><FontIcon color="primary" className='fa fa-folder-open-o' /></ListItemIcon>
-          <ListItemText primary="Open..." />
-        </ListItem>
-        <ListItem id="appBarSave" onClick={() => this.handleListItemClick('Save')} >
-          <ListItemIcon><FontIcon color="primary" className='fa fa-download' /></ListItemIcon>
-          <ListItemText primary="Save As..." />
-        </ListItem>
-        <ListItem id="appBarImportHLS" onClick={() => this.handleListItemClick('ImportHLS')} >
-          <ListItemIcon><ImportIcon color="primary" /></ListItemIcon>
-          <ListItemText primary="Import.." />.</ListItem>
-        <ListItem id="appBarExportHLS" onClick={() => this.handleListItemClick('ExportHLS')} >
-          <ListItemIcon><ExportIcon color="primary" /></ListItemIcon>
-          <ListItemText primary="Export..." /></ListItem>
-        <ListItem id="appBarImportCellTemplate" onClick={() => this.handleListItemClick('ImportCellTemplate')} >
-          <ListItemIcon><CellTemplateIcon color="primary" /></ListItemIcon>
-          <ListItemText primary="Import Cell Template..." />
-        </ListItem>
-        <ListItem id="appBarUploadFiles" onClick={() => this.handleListItemClick('UploadFiles')} >
-          <ListItemIcon><FontIcon color="primary" className='fa fa-cloud-upload' /></ListItemIcon>
-          <ListItemText primary="Upload..." />
-        </ListItem>
-        <ListItem id="appBarImportCellTemplate" onClick={() => this.handleListItemClick('DownloadFiles')} >
-          <ListItemIcon><FontIcon color="primary" className='fa fa-cloud-download' /></ListItemIcon>
-          <ListItemText primary="Download..." />
-        </ListItem>
+        <MenuItem 
+          id="appBarUploadFiles" 
+          onClick={() => this.handleMenuItemClick('UploadFiles')}
+        >
+          <ListItemIcon>
+            <Icon color='primary' className='fa fa-cloud-upload' />
+          </ListItemIcon>
+          <ListItemText>Upload...</ListItemText>
+        </MenuItem>
+
+        <MenuItem
+          id="appBarDownloadFiles"
+          onClick={() => this.handleMenuItemClick('DownloadFiles')}
+        >
+          <ListItemIcon>
+            <Icon color='primary' className='fa fa-cloud-download' />
+          </ListItemIcon>
+          <ListItemText>Download...</ListItemText>
+        </MenuItem>
+        
       </Drawer>
       <Snackbar
         message={this.snackBarMessage}
         autoHideDuration={4000}
         open={this.state.openSnackBar}
-        onRequestClose={() => this.setState({ openSnackBar: false })}
+        onClose={() => this.setState({ openSnackBar: false })}
       />
       {content}
     </div>
diff --git a/components/settings/actions/ActionDialog.js b/components/settings/actions/ActionDialog.js
index d91410a..4d28eeb 100644
--- a/components/settings/actions/ActionDialog.js
+++ b/components/settings/actions/ActionDialog.js
@@ -1,11 +1,12 @@
 import React from 'react';
 import Dialog from '@material-ui/core/Dialog/Dialog';
+import Button from '@material-ui/core/Button';
+import Utils from '../../../Utils';
+
 import DialogActions from '@material-ui/core/DialogActions';
 import DialogContent from '@material-ui/core/DialogContent';
 import DialogContentText from '@material-ui/core/DialogContentText';
 import DialogTitle from '@material-ui/core/DialogTitle';
-import Button from '@material-ui/core/Button';
-import Utils from '../../../Utils';
 
 const styles = { cancel: { marginRight: 10 } }
 export default class ActionDialog extends React.Component {
@@ -53,7 +54,7 @@ export default class ActionDialog extends React.Component {
               })
             }
             GEPPETTO.trigger(GEPPETTO.Events.Hide_spinner);
-            this.props.onClose();
+            this.props.onRequestClose();
           }
         });
     }
@@ -65,7 +66,7 @@ export default class ActionDialog extends React.Component {
 
   cancelDialog = () => {
     this.setState({ open: false, errorMessage: undefined, errorDetails: undefined })
-    this.props.onClose();
+    this.props.onRequestClose();
   }
 
   processError = response => {
@@ -80,7 +81,7 @@ export default class ActionDialog extends React.Component {
 
   downloadJsonResponse (jsonData) {
     var filename = this.createFileName('NetPyNE_Model_')
-
+    
     if (jsonData.simConfig && jsonData.simConfig.filename) {
       filename = this.createFileName(jsonData.simConfig.filename + '_')
     }
@@ -89,7 +90,7 @@ export default class ActionDialog extends React.Component {
 
     const blob = new Blob([JSON.stringify(jsonData, null, 2)], { type : 'application/json' });
     this.forceBlobDownload(blob, filename)
-
+    
   }
 
   unescapeText (text) {
@@ -120,14 +121,28 @@ export default class ActionDialog extends React.Component {
     link.click();
     link.parentNode.removeChild(link);
   }
+
   render () {
     if (this.state.open) {
-      var cancelAction = <Button color="primary" onClick={this.cancelDialog} style={styles.cancel}>CANCEL</Button>;
+      var cancelAction = (
+        <Button 
+          color="primary" 
+          onClick={this.cancelDialog} 
+          style={styles.cancel}
+          key="CANCEL" 
+        >CANCEL</Button>
+      );
       if (this.state.errorMessage == undefined) {
         var title = this.props.title
         var actions = [
           cancelAction, 
-          <Button id="appBarPerformActionButton" variant="contained" color="primary" onClick={this.performAction}>{this.props.buttonLabel}</Button>
+          <Button 
+            id="appBarPerformActionButton"
+            key="appBarPerformActionButton"
+            variant="contained"
+            color="primary"
+            onClick={this.performAction}
+          >{this.props.buttonLabel}</Button>
         ];
         var content = this.props.children;
       } else {
@@ -136,6 +151,7 @@ export default class ActionDialog extends React.Component {
           <Button
             variant="contained"
             color="primary"
+            key="BACK"
             onClick={() => this.setState({ errorMessage: undefined, errorDetails: undefined })}
           >BACK</Button>
         ];
@@ -143,21 +159,18 @@ export default class ActionDialog extends React.Component {
         var content = Utils.parsePythonException(this.state.errorDetails);
       }
       return (
+
         <Dialog
           open={this.state.open}
-          style={{ whiteSpace: "pre-wrap" }}
           onClose={() => this.closeDialog()}
         >
-          <DialogTitle id="alert-dialog-slide-title">{title}</DialogTitle>
-          <DialogContent style={{ overflow: 'auto' }}>
-            <DialogContentText id="alert-dialog-slide-description">
-              {content}
-            </DialogContentText>
+          <DialogTitle>{title}</DialogTitle>
+          <DialogContent>
+            {content}   
           </DialogContent>
           <DialogActions>
             {actions}
           </DialogActions>
-
         </Dialog>
       );
     }
diff --git a/components/settings/actions/ImportCellParams.js b/components/settings/actions/ImportCellParams.js
index 5a122e1..8f911b6 100644
--- a/components/settings/actions/ImportCellParams.js
+++ b/components/settings/actions/ImportCellParams.js
@@ -1,12 +1,13 @@
 import React from 'react';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../../general/Checkbox';
 import TextField from '@material-ui/core/TextField';
 import ActionDialog from './ActionDialog';
 import ListComponent from '../../general/List';
 import FileBrowser from '../../general/FileBrowser';
 import NetPyNEField from '../../general/NetPyNEField';
+
 import IconButton from '@material-ui/core/IconButton';
-import FontIcon from '@material-ui/core/Icon';
+import Icon from '@material-ui/core/Icon';
 
 const styles = {
   card: {
@@ -76,7 +77,6 @@ export default class ImportCellParams extends React.Component {
         args={{ cellArgs, fileName, cellName, label, modFolder, importSynMechs, compileMod }}
         {...this.props}
       >
-        
         <TextField
           value={label}
           id="importCellTemplateName"
@@ -97,10 +97,9 @@ export default class ImportCellParams extends React.Component {
             id="importCellTemplateFile"
             className='flex-row-icon b-4'
             onClick={() => this.showExplorerDialog('fileName', false)} 
-            tooltip='File explorer'
-            tooltipPosition={'top-right'}
+            tooltip-data='File explorer'
           >
-            <FontIcon className={'fa fa-folder-o listIcon'} />
+            <Icon className='fa fa-folder-o listIcon' />
           </IconButton>
 
           <NetPyNEField id="netParams.importCellParams.fileName" className="netpyneFieldNoWidth">
@@ -113,30 +112,28 @@ export default class ImportCellParams extends React.Component {
           
         </div>
 
-        
+
         <div className="flex-row">
           <IconButton
             id="importCellTemplateModFile"
             className='flex-row-icon b-4'
             onClick={() => this.showExplorerDialog('modFolder', true)} 
-            tooltip='File explorer'
-            tooltipPosition={'top-right'}
+            tooltip-data='File explorer'
           >
-            <FontIcon className={"fa fa-folder-o listIcon"} />
+            <Icon className="fa fa-folder-o listIcon" />
           </IconButton>
 
           <NetPyNEField id="netParams.importCellParams.modFolder" className="netpyneRightField" >
             <TextField 
+              value={modFolder}
               className="netpyneFieldNoWidth fx-11 no-z-index"
-              value={modFolder} 
               onChange={event => this.setState({ modFolder: event.target.value })} 
             />
           </NetPyNEField>
-          
         </div>
 
         <div className="listStyle netpyneField">
-          <ListComponent realType="dict" label="Cell Template Parameters (key:value pair)" ref="cellArgs" />
+          <ListComponent id="cellArgs" realType="dict" floatingLabelText="Cell Template Parameters (key:value pair)" ref="cellArgs" />
         </div>
 
         <div style={styles.mods.container}>
@@ -165,7 +162,7 @@ export default class ImportCellParams extends React.Component {
         <FileBrowser 
           open={explorerDialogOpen} 
           exploreOnlyDirs={exploreOnlyDirs} 
-          onClose={selection => this.closeExplorerDialog(selection)}
+          onRequestClose={selection => this.closeExplorerDialog(selection)}
         />
 
       </ActionDialog>
diff --git a/components/settings/actions/ImportExportHLS.js b/components/settings/actions/ImportExportHLS.js
index 8918451..48cafe1 100644
--- a/components/settings/actions/ImportExportHLS.js
+++ b/components/settings/actions/ImportExportHLS.js
@@ -1,21 +1,24 @@
 import React from 'react';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../../general/Checkbox';
 import MenuItem from '@material-ui/core/MenuItem';
 import TextField from '@material-ui/core/TextField';
-import SelectField from '../../base/SelectField';
-import IconButton from '@material-ui/core/IconButton';
-import FontIcon from '@material-ui/core/Icon';
+import Select from '@material-ui/core/Select';
 import { orange , grey } from '@material-ui/core/colors';
 import FileBrowser from '../../general/FileBrowser';
 import ActionDialog from './ActionDialog';
-
+import InputLabel from '@material-ui/core/InputLabel';
+import FormControl from '@material-ui/core/FormControl';
+import FormHelperText from '@material-ui/core/FormHelperText'
 const orange500 = orange[500];
 const grey400 = grey[400];
 
+import IconButton from '@material-ui/core/IconButton';
+import Icon from '@material-ui/core/Icon';
+
 export default class ImportExportHLS extends React.Component {
   constructor (props) {
     super(props);
-    this.state = { ...this.initialState() }
+    this.state = this.initialState()
 
     this.isFormValid = this.isFormValid.bind(this);
   }
@@ -127,114 +130,129 @@ export default class ImportExportHLS extends React.Component {
     const disableLoadMod = this.state.loadMod === '' ? true : !this.state.loadMod
     switch (this.props.mode) {
     case 'IMPORT':
-      var content
-                    = <div>
-                      <div className="flex-row">
-                        <IconButton
-                          id="appBarImportFileName"
-                          className='flex-row-icon'
-                          onClick={() => this.showExplorerDialog('netParamsPath', false, '.py')}
-                          tooltip='File explorer'
-                          tooltipPosition={'top-right'}
-                        >
-                          <FontIcon className={'fa fa-folder-o listIcon'} />
-                        </IconButton>
-                        <TextField
-                          className="netpyneFieldNoWidth fx-11 no-z-index"
-                          value={this.state.netParamsFullPath}
-                          onChange={event => this.onNetParamsPathChange(event.target.value)}
-                          label="NetParams file:"
-                          underlineStyle={{ borderWidth:'1px' }}
-                          helperText={"Only .py files"}
-                        />
-
-                      </div>
-
-                      <div className="flex-row">
-                        <IconButton
-                          className='flex-row-icon'
-                          onClick={() => this.showExplorerDialog('simConfigPath', false, '.py')}
-                          tooltip='File explorer'
-                          tooltipPosition={'top-right'}
-                        >
-                          <FontIcon className={'fa fa-folder-o listIcon'} />
-                        </IconButton>
-                        <TextField
-                          className="netpyneFieldNoWidth fx-11 no-z-index"
-                          value={this.state.simConfigFullPath}
-                          onChange={event => this.onSimConfigPathChange(event.target.value)}
-                          label="SimConfig file:"
-                          underlineStyle={{ borderWidth:'1px' }}
-                          helperText={"Only .py files"}
-                        />
-
-                      </div>
-
-                      <div className="flex-row">
-                        <IconButton
-                          className='flex-row-icon'
-                          onClick={() => this.showExplorerDialog('modFolder', true, false)}
-                          tooltip='File explorer'
-                          tooltipPosition={'top-right'}
-                          disabled={disableLoadMod}
-                        >
-                          <FontIcon className={`fa fa-folder-o ${!disableLoadMod && "listIcon"}`} />
-                        </IconButton>
+      var content = (
+        <div>
+          <div className="flex-row">
+            <IconButton
+              id="appBarImportFileName"
+              className='flex-row-icon'
+              onClick={() => this.showExplorerDialog('netParamsPath', false, '.py')} 
+              tooltip-data='File explorer'
+            >
+              <Icon className={'fa fa-folder-o listIcon'} />
+            </IconButton>
+            <TextField 
+              className="netpyneFieldNoWidth fx-11 no-z-index"
+              value={this.state.netParamsFullPath}
+              onChange={event => this.onNetParamsPathChange(event.target.value)}
+              label="NetParams file"
+              helperText='Only .py files'
+            />
+          </div>
 
-                        <TextField
-                          className="netpyneFieldNoWidth fx-11 no-z-index"
-                          label="Path to mod files"
-                          disabled={disableLoadMod}
-                          value={this.state.modFolder}
-                          onClick={event => this.onModFolderPathChange(event.target.value)}
-                          helperText={"Only mod folders"}
-                        />
 
-                      </div>
+          <div className="flex-row">
+            <IconButton
+              className='flex-row-icon'
+              onClick={() => this.showExplorerDialog('simConfigPath', false, '.py')} 
+              tooltip-data='File explorer'
+            >
+              <Icon className={'fa fa-folder-o listIcon'} />
+            </IconButton>
+            <TextField 
+              className="netpyneFieldNoWidth fx-11 no-z-index" 
+              value={this.state.simConfigFullPath} 
+              onChange={event => this.onSimConfigPathChange(event.target.value)} 
+              label="SimConfig file:"
+              helperText='Only .py files' 
+            />
+              
+          </div>
 
-                      <div className="flex-row">
-                        <TextField className="netpyneRightField fx-6 mr-2" label="NetParams variable" value={this.state.netParamsVariable} onChange={event => this.setState({ netParamsVariable: event.target.value })} />
-                        <TextField className="netpyneRightField fx-6" label="SimConfig variable" value={this.state.simConfigVariable} onChange={event => this.setState({ simConfigVariable: event.target.value })} />
-                      </div>
+          <div className="flex-row">
+            <IconButton
+              className='flex-row-icon'
+              onClick={() => this.showExplorerDialog('modFolder', true, false)} 
+              tooltip-data='File explorer'
+            >
+              <Icon className={`fa fa-folder-o ${!disableLoadMod && "listIcon"}`} />
+            </IconButton>
 
-                      <SelectField
-                        id="appBarImportRequiresMod"
-                        className="netpyneField"
-                        helperText={ this.state.loadMod === undefined ? "This field is required." : false }
-                        label="Are custom mod files required for this model?"
-                        value={this.state.loadMod}
-                        onChange={event => this.setState({ loadMod: event.target.value })}
-                      >
-                        <MenuItem value={true} >Yes, this model requires custom mod files</MenuItem>
-                        <MenuItem id="appBarImportRequiresModNo" value={false}>No, this model only requires NEURON built-in mod files</MenuItem>
-                      </SelectField>
+            <TextField 
+              className="netpyneFieldNoWidth fx-11 no-z-index"
+              label="Path to mod files"
+              disabled={disableLoadMod} 
+              value={this.state.modFolder} 
+              onClick={event => this.onModFolderPathChange(event.target.value)} 
+              helperText={"Only mod folders"}
+            />
+          </div>
 
-                      <Checkbox
-                        disabled={disableLoadMod}
-                        className="netpyneCheckbox pt-4"
-                        label="Compile mod files"
-                        checked={this.state.compileMod}
-                        onChange={() => this.setState(oldState => ({ compileMod: !oldState.compileMod }) )}
-                      />
 
-                      <FileBrowser open={this.state.explorerDialogOpen} exploreOnlyDirs={this.state.exploreOnlyDirs} filterFiles={this.state.filterFiles} onClose={selection => this.closeExplorerDialog(selection)} />
+          <div className="flex-row">
+            <TextField 
+              className="netpyneRightField fx-6 mr-2"
+              label="NetParams variable" 
+              value={this.state.netParamsVariable}
+              onChange={event => this.setState({ netParamsVariable: event.target.value })}
+            />
+            <TextField
+              className="netpyneRightField fx-6"
+              label="SimConfig variable"
+              value={this.state.simConfigVariable}
+              onChange={event => this.setState({ simConfigVariable: event.target.value })}
+            />
+          </div>
+          
+          <FormControl>
+            <InputLabel>Are custom mod files required for this model?</InputLabel>
+            <Select
+              id="appBarImportRequiresMod"
+              className="netpyneField"
+              style={{ marginTop:0 }}
+              value={this.state.loadMod}
+              onChange={event => this.setState({ loadMod: event.target.value })}
+            >
+              <MenuItem value={true}>Yes, this model requires custom mod files</MenuItem>
+              <MenuItem id="appBarImportRequiresModNo" value={false} >No, this model only requires NEURON built-in mod files</MenuItem>
+            </Select>
+            <FormHelperText>{this.state.loadMod === undefined ? "This field is required." : ''}</FormHelperText>
+          </FormControl>
+            
+            
+          <Checkbox
+            disabled={this.state.loadMod === '' ? true : !this.state.loadMod}
+            className="netpyneCheckbox pt-4"
+            label="Compile mod files"
+            checked={this.state.compileMod}
+            onChange={() => this.setState(oldState => ({ compileMod: !oldState.compileMod, }))}
+          />
+            
+          <FileBrowser 
+            open={this.state.explorerDialogOpen}
+            exploreOnlyDirs={this.state.exploreOnlyDirs}
+            filterFiles={this.state.filterFiles}
+            onRequestClose={selection => this.closeExplorerDialog(selection)}
+          />
 
-                    </div>
+        </div>
+      )
       var command = 'netpyne_geppetto.importModel';
       var message = 'IMPORTING MODEL';
       var buttonLabel = 'Import'
       var title = 'Import from Python scripts'
       break;
     case 'EXPORT':
-      var content
-                    = <TextField
-                      className="netpyneField"
-                      label="File name"
-                      value={this.state.fileName}
-                      onChange={(e, v) => {
-                        this.setState({ fileName: v })
-                      }}
-                    />
+      var content = (
+        <TextField
+          className="netpyneField"
+          label="File name"
+          value={this.state.fileName}
+          onChange={event => {
+            this.setState({ fileName: event.target.value })
+          }}
+        />
+      )
       var command = 'netpyne_geppetto.exportHLS';
       var message = 'EXPORTING MODEL';
       var buttonLabel = 'Export'
diff --git a/components/settings/actions/LoadFile.js b/components/settings/actions/LoadFile.js
index b2e7155..430e83e 100644
--- a/components/settings/actions/LoadFile.js
+++ b/components/settings/actions/LoadFile.js
@@ -1,18 +1,23 @@
 import React from 'react';
-import { List, ListItem, ListItemText } from '@material-ui/core';
+import List from '@material-ui/core/List';
+import ListItem from '@material-ui/core/ListItem';
 import { orange, grey } from '@material-ui/core/colors';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../../general/Checkbox';
 import MenuItem from '@material-ui/core/MenuItem';
 import TextField from '@material-ui/core/TextField';
-import IconButton from '@material-ui/core/IconButton';
-import FontIcon from '@material-ui/core/Icon';
-import SelectField from '../../base/SelectField';
+import Select from '@material-ui/core/Select';
 import FileBrowser from '../../general/FileBrowser';
 import ActionDialog from './ActionDialog';
-
-
+import ListItemIcon from '@material-ui/core/ListItemIcon';
+import ListItemText from '@material-ui/core/ListItemText';
+import InputLabel from '@material-ui/core/InputLabel';
+import FormControl from '@material-ui/core/FormControl';
+import FormHelperText from '@material-ui/core/FormHelperText'
 const orange500 = orange[500], grey400 = grey[400];
 
+import IconButton from '@material-ui/core/IconButton';
+import Icon from '@material-ui/core/Icon';
+
 const loadOptions = [
   { label: 'High-level Network Parameters (netParams)', label2: 'Cell rules, connectivity rules, etc', state: 'loadNetParams' },
   { label: 'Simulation Configuration (simConfig)', label2: 'duration, recorded variables, etc', state: 'loadSimCfg' },
@@ -85,6 +90,7 @@ export default class LoadFile extends React.Component {
     let freezeSimulation = !!(freezeInstance && this.state.loadSimData)
     let tab = this.state.loadSimData || this.state.loadNet ? 'simulate' : 'define'
     const disableLoadMod = this.state.areModFieldsRequired === '' ? true : !this.state.areModFieldsRequired
+
     return (
       <ActionDialog
         title={'Open JSON file'}
@@ -101,84 +107,100 @@ export default class LoadFile extends React.Component {
             <IconButton
               id="loadJsonFile"
               className='flex-row-icon'
-              onClick={() => this.showExplorerDialog('jsonModelFolder', false)}
-              tooltip='File explorer'
-              tooltipPosition={'top-right'}
+              onClick={() => this.showExplorerDialog('jsonModelFolder', false)} 
+              tooltip-data='File explorer'
             >
-              <FontIcon className={"fa fa-folder-o listIcon"} />
+              <Icon className={"fa fa-folder-o listIcon"} />
             </IconButton>
 
-            <TextField
-              readOnly
-              id="loadJsonFile"
-              className="netpyneField"
-              style={{ cursor: 'pointer', marginBottom:15 }}
-              label="Json file:"
-              value={this.state.jsonModelFolder}
-              onClick={() => this.showExplorerDialog('jsonModelFolder', false)}
-              underlineStyle={{ borderWidth:'1px' }}
-              helperText={this.state.jsonPath != '' ? 'path: ' + this.state.jsonPath : ''}
+            <TextField 
+              className="netpyneFieldNoWidth fx-11 no-z-index"
+              label="Json file:" 
+              value={this.state.jsonModelFolder} 
+              onChange={event => this.setState({ jsonModelFolder: event.target.value })}
+              helperText={this.state.jsonPath != '' ? 'path: ' + this.state.jsonPath : ''} 
             />
 
           </div>
-          <List>
-            {loadOptions.map((loadOption, index) =>
-              <ListItem style={{ height: 50, width:'49%', float:index % 2 == 0 ? 'left' : 'right', marginTop: index > 1 ? "20px" : "-10px" }}
+          
+
+          <List> 
+            {loadOptions.map((loadOption, index) => (
+              <ListItem 
+                style={{ height: 50, width:'49%', float:index % 2 == 0 ? 'left' : 'right', marginTop: index > 1 ? "20px" : "-10px" }}
                 key={index}
-                leftCheckbox= {<Checkbox onChange={() => this.setState(({ [loadOption.state]: oldState, ...others }) => ({ [loadOption.state]: !oldState }))} checked={this.state[loadOption.state]} />}
-              ><ListItemText primary={loadOption.label} secondaryText={loadOption.label2} /></ListItem>)
-            }
+              >
+                <ListItemIcon>
+                  <Checkbox 
+                    onChange={() => this.setState(({ [loadOption.state]: oldState, ...others }) => ({ [loadOption.state]: !oldState }))} 
+                    checked={this.state[loadOption.state]} 
+                  />
+                </ListItemIcon>
+                <ListItemText
+                  primary={loadOption.label}
+                  secondary={loadOption.label2}
+                />
+              </ListItem>
+            ))}
           </List>
-          <div>
-            <SelectField
-              className="netpyneField"
-              id="appBarLoadRequiresMod"
-              helperText={this.state.areModFieldsRequired === undefined ? "This field is required." : false}
-              label="Are custom mod files required for this model?"
-              value={this.state.areModFieldsRequired}
-              onChange={event => this.setState({ areModFieldsRequired: event.target.value })}
-            >
-              <MenuItem value={true}>
-              Yes, this model requires custom mod files
-              </MenuItem>
-              <MenuItem id="appBarLoadRequiresModNo" value={false} >
-              No, this model only requires NEURON built-in mod files
-              </MenuItem>
-            </SelectField>
 
 
+          <div>
+            <FormControl>
+              <InputLabel >Are custom mod files required for this model?</InputLabel>
+              <Select
+                className="netpyneField"
+                id="appBarLoadRequiresMod"
+                value={this.state.areModFieldsRequired}
+                onChange={event => this.setState({ areModFieldsRequired: event.target.value })}
+              >
+                <MenuItem 
+                  value={true} 
+                >
+                  Yes, this model requires custom mod files
+                </MenuItem>
+                <MenuItem 
+                  id="appBarLoadRequiresModNo" 
+                  value={false} 
+                >
+                  No, this model only requires NEURON built-in mod files
+                </MenuItem>
+              </Select>
+              <FormHelperText>{this.state.areModFieldsRequired === undefined ? "This field is required." : ''}</FormHelperText>
+            </FormControl>
+            
+
             <div className="flex-row">
               <IconButton
                 className='flex-row-icon'
-                onClick={() => this.showExplorerDialog('modFolder', true)}
-                tooltip='File explorer'
-                tooltipPosition={'top-right'}
-                disabled={disableLoadMod}
+                onClick={() => this.showExplorerDialog('modFolder', true)} 
+                tooltip-data='File explorer'
+                disabled={disableLoadMod} 
               >
-                <FontIcon className={`fa fa-folder-o ${!disableLoadMod && "listIcon"}`} />
+                <Icon className={`fa fa-folder-o ${!disableLoadMod && "listIcon"}`} />
               </IconButton>
 
-              <TextField
-                readOnly
-                className="netpyneFieldNoWidth"
-                style={{ float: 'left', width: '48%', cursor: 'pointer' , marginBottom: 15, marginTop:-10 }}
+              <TextField 
+                className="netpyneFieldNoWidth fx-8 no-z-index"
                 label="Mod folder:"
-                disabled={this.state.areModFieldsRequired === '' ? true : !this.state.areModFieldsRequired}
-                value={this.state.modFolder}
-                onClick={() => this.showExplorerDialog('modFolder', true)}
-                underlineStyle={{ borderWidth:'1px' }}
-                helperText={this.state.modPath != '' ? 'path: ' + this.state.modPath : ''}
+                disabled={disableLoadMod} 
+                value={this.state.modFolder} 
+                onChange={event => {
+                  this.setState({ modFolder: event.target.value })
+                }} 
+                helperText={this.state.modPath != '' ? 'path: ' + this.state.modPath : ''} 
               />
 
               <Checkbox
-                className={"netpyneCheckbox fx-3"}
-                disabled={this.state.areModFieldsRequired === '' ? true : !this.state.areModFieldsRequired}
                 label="Compile mod files"
                 checked={this.state.compileMod}
+                className={"netpyneCheckbox fx-3"}
+                disabled={this.state.areModFieldsRequired === '' ? true : !this.state.areModFieldsRequired}
                 onChange={() => this.setState(oldState => ({ compileMod: this.state.areModFieldsRequired ? !oldState.compileMod : false }))}
               />
             </div>
-            <FileBrowser open={this.state.explorerDialogOpen} exploreOnlyDirs={this.state.exploreOnlyDirs} filterFiles={'.json'} onClose={selection => this.closeExplorerDialog(selection)} />
+
+            <FileBrowser open={this.state.explorerDialogOpen} exploreOnlyDirs={this.state.exploreOnlyDirs} filterFiles={'.json'} onRequestClose={selection => this.closeExplorerDialog(selection)} />
           </div>
         </div>
       </ActionDialog>
diff --git a/components/settings/actions/SaveFile.js b/components/settings/actions/SaveFile.js
index 7d7c731..b7ab560 100644
--- a/components/settings/actions/SaveFile.js
+++ b/components/settings/actions/SaveFile.js
@@ -1,10 +1,13 @@
 import React from 'react';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../../general/Checkbox';
 import TextField from '@material-ui/core/TextField';
-import { List, ListItem, ListItemText } from '@material-ui/core';
+import { List, ListItem } from '@material-ui/core';
 import Utils from '../../../Utils';
 import ActionDialog from './ActionDialog';
 
+import ListItemIcon from '@material-ui/core/ListItemIcon';
+import ListItemText from '@material-ui/core/ListItemText';
+
 const saveOptions = [
   { label: 'High-level Network Parameters (netParams)', label2: 'Cell rules, connectivity rules, etc', state: 'loadNetParams' },
   { label: 'Simulation Configuration (simConfig)', label2: 'duration, recorded variables, etc', state: 'loadSimCfg' },
@@ -50,12 +53,24 @@ export default class SaveFile extends React.Component {
           onChange={event => this.setState({ fileName: event.target.value })} 
         />
         <List >
-          {saveOptions.map((saveOption, index) => <ListItem style={{ height: 50, width:'49%', float:index % 2 == 0 ? 'left' : 'right', marginTop: index > 1 ? "20px" : "-10px" }}
-            key={index}
-            leftCheckbox= {<Checkbox disabled={index == 2 ? this.state.disableNetCells : index == 3 ? this.state.disableNetCells : false} onChange={() => this.setState(({ [saveOption.state]: oldState, ...others }) => ({ [saveOption.state]: !oldState }))} checked={this.state[saveOption.state]}/>}
-            
-          ><ListItemText primary={saveOption.label} secondary={saveOption.label2} />
-          </ListItem>)}
+          {saveOptions.map((saveOption, index) => (
+            <ListItem 
+              style={{ height: 50, width:'49%', float:index % 2 == 0 ? 'left' : 'right', marginTop: index > 1 ? "20px" : "-10px" }}
+              key={index}
+            >
+              <ListItemIcon>
+                <Checkbox 
+                  disabled={index == 2 ? this.state.disableNetCells : index == 3 ? this.state.disableNetCells : false} 
+                  onChange={() => this.setState(({ [saveOption.state]: oldState, ...others }) => ({ [saveOption.state]: !oldState }))} 
+                  checked={this.state[saveOption.state]}
+                />
+              </ListItemIcon>
+              <ListItemText
+                primary={saveOption.label}
+                secondary={saveOption.label2}
+              />
+            </ListItem>
+          ))}
         </List>
       </ActionDialog>
     )
diff --git a/components/settings/actions/UploadDownloadFiles.js b/components/settings/actions/UploadDownloadFiles.js
index 06e1e43..e07648d 100644
--- a/components/settings/actions/UploadDownloadFiles.js
+++ b/components/settings/actions/UploadDownloadFiles.js
@@ -1,13 +1,15 @@
 import React from 'react';
 import TextField from '@material-ui/core/TextField';
 import IconButton from '@material-ui/core/IconButton';
-import FontIcon from '@material-ui/core/Icon';
+import Icon from '@material-ui/core/Icon';
 
+import Button from '@material-ui/core/Button'
 import Dialog from '@material-ui/core/Dialog/Dialog';
-import DialogTitle from '@material-ui/core/DialogTitle';
-import DialogContent from '@material-ui/core/DialogContent';
 import DialogActions from '@material-ui/core/DialogActions';
-import Button from '@material-ui/core/Button';
+import DialogContent from '@material-ui/core/DialogContent';
+
+import DialogTitle from '@material-ui/core/DialogTitle';
+
 import FileBrowser from '../../general/FileBrowser';
 
 const styles = {
@@ -25,7 +27,7 @@ const styles = {
 export default class UploadDownloadFile extends React.Component {
   constructor (props) {
     super(props);
-    this.state = { ...this.initialState() }
+    this.state = this.initialState()
     this.message = ''
   }
     
@@ -177,88 +179,85 @@ export default class UploadDownloadFile extends React.Component {
         
       switch (mode) {
       case 'UPLOAD':
-        var content 
-                    = <div>
-                      <div className="flex-row">
-                        <div >
-                          <input 
-                            multiple
-                            type="file" 
-                            style={{ ...styles.input }}
-                            className="form-control" 
-                            onChange={this.onUploadFileArrayChange}
-                          />
-                                
-                        </div> 
-                      </div>
-                      <p className="mt-2">Accept: .py .zip .gz .tar.gz .pdf .txt .xls .png .jpeg</p>
-                    </div>
+        var content = (
+          <div>
+            <div className="flex-row">
+              <div >
+                <input 
+                  multiple
+                  type="file" 
+                  style={{ ...styles.input }}
+                  className="form-control" 
+                  onChange={this.onUploadFileArrayChange}
+                />
+                      
+              </div> 
+            </div>
+            <p className="mt-2">Accept: .py .zip .gz .tar.gz .pdf .txt .xls .png .jpeg</p>
+          </div>
+        )
 
         var buttonLabel = 'Upload'
         var title = 'Upload files'
         break;
       case 'DOWNLOAD':
-        var content 
-                    = <div>
-                      <div className="flex-row">
-                        <IconButton
-                          className='flex-row-icon'
-                          onClick={() => this.showExplorerDialog('.py')} 
-                          tooltip='File explorer'
-                          tooltipPosition={'top-right'}
-                        >
-                          <FontIcon className={'fa fa-folder-o listIcon'} />
-                        </IconButton>
-                        <TextField 
-                          className="netpyneFieldNoWidth fx-11 no-z-index"
-                          value={this.state.downloadPathsDisplayText}
-                          onChange={event => this.changeDownloadFilePathsDisplayText(event.target.value)}
-                          label="Files:"
-                          underlineStyle={{ borderWidth:'1px' }}
-                          helperText={"Select files to download"}
-                        />
-                            
-                      </div>
-                    </div>
-                    
+        var content = (
+          <div>
+            <div className="flex-row">
+              <IconButton
+                className='flex-row-icon'
+                onClick={() => this.showExplorerDialog('.py')} 
+                tooltip-data='File explorer'
+              >
+                <Icon className={'fa fa-folder-o listIcon'} />
+              </IconButton>
+              <TextField 
+                className="netpyneFieldNoWidth fx-11 no-z-index"
+                value={this.state.downloadPathsDisplayText}
+                onChange={event => this.changeDownloadFilePathsDisplayText(event.target.value)}
+                label="Files:"
+                helperText="Select files to download"
+              />
+            </div>
+          </div>
+        )
+
         var buttonLabel = 'DOWNLOAD'
         var title = 'Download files'
         break
       }
 
-      var actions = [
-        <Button 
-          color="primary"
-          onClick={() => {
-            this.props.onRequestClose()
-          }}
-          style={{ marginRight: 10 }}
-        >CANCEL</Button>,
-        <Button
-          color="primary"
-          variant="contained"
-          id="appBarPerformActionButton"
-          disabled={mode === 'UPLOAD' ? !this.state.uploadFiles : this.state.downloadPaths.lenght === 0 || !this.state.downloadPathsDisplayText}
-          onClick={() => mode === 'UPLOAD' ? this.uploadFiles() : this.downloadFiles()}
-        >{buttonLabel}</Button>
-      ];
-
+        
       return (
         <div>
           <Dialog
-            title={title}
-            
-            bodyStyle={{ overflow: 'auto' }}
-            style={{ whiteSpace: "pre-wrap" }}
-            {...this.props}
             open={this.props.open && this.state.open}
+            onClose={() => this.closeDialog()}
           >
-            <DialogTitle >{title}</DialogTitle>
+            <DialogTitle>{title}</DialogTitle>
             <DialogContent>
-              {content}
+              {content}   
             </DialogContent>
-            <DialogActions>{actions}</DialogActions>
+            <DialogActions>
+              <Button 
+                onClick={() => {
+                  this.props.onRequestClose()
+                }}
+                style={{ marginRight: 10 }}
+              >
+                        CANCEL
+              </Button>
+              <Button
+                color="primary"
+                id="appBarPerformActionButton"
+                disabled={mode === 'UPLOAD' ? !this.state.uploadFiles : this.state.downloadPaths.lenght === 0 || !this.state.downloadPathsDisplayText}
+                onClick={() => mode === 'UPLOAD' ? this.uploadFiles() : this.downloadFiles()}
+              >
+                {buttonLabel}
+              </Button>
+            </DialogActions>
           </Dialog>
+
           <FileBrowser 
             open={this.state.explorerDialogOpen}
             exploreOnlyDirs={false}
diff --git a/components/transition/Transition.js b/components/transition/Transition.js
index b40e279..ed2583b 100644
--- a/components/transition/Transition.js
+++ b/components/transition/Transition.js
@@ -1,18 +1,18 @@
 import React from 'react';
 import Dialog from '@material-ui/core/Dialog';
-import DialogActions from '@material-ui/core/DialogActions';
-import DialogContent from '@material-ui/core/DialogContent';
-import DialogContentText from '@material-ui/core/DialogContentText';
-import DialogTitle from '@material-ui/core/DialogTitle';
 import SvgIcon from '@material-ui/core/SvgIcon';
-import Checkbox from '@material-ui/core/Checkbox';
+import Checkbox from '../general/Checkbox';
 import TextField from '@material-ui/core/TextField';
-import FlatButton from '@material-ui/core/Button';
+import Button from '@material-ui/core/Button';
 import Utils from '../../Utils';
 import FontIcon from '@material-ui/core/Icon';
 import IconButton from '@material-ui/core/IconButton';
 import { pink } from '@material-ui/core/colors';
 
+import DialogActions from '@material-ui/core/DialogActions';
+import DialogContent from '@material-ui/core/DialogContent';
+import DialogTitle from '@material-ui/core/DialogTitle';
+
 const pink400 = pink[400];
 const RocketIcon = props => (<SvgIcon {...props}><svg viewBox="0 0 512 512"><path d="M505.1 19.1C503.8 13 499 8.2 492.9 6.9 460.7 0 435.5 0 410.4 0 307.2 0 245.3 55.2 199.1 128H94.9c-18.2 0-34.8 10.3-42.9 26.5L2.6 253.3c-8 16 3.6 34.7 21.5 34.7h95.1c-5.9 12.8-11.9 25.5-18 37.7-3.1 6.2-1.9 13.6 3 18.5l63.6 63.6c4.9 4.9 12.3 6.1 18.5 3 12.2-6.1 24.9-12 37.7-17.9V488c0 17.8 18.8 29.4 34.7 21.5l98.7-49.4c16.3-8.1 26.5-24.8 26.5-42.9V312.8c72.6-46.3 128-108.4 128-211.1.1-25.2.1-50.4-6.8-82.6zM400 160c-26.5 0-48-21.5-48-48s21.5-48 48-48 48 21.5 48 48-21.5 48-48 48z"></path></svg></SvgIcon>);
 
@@ -110,7 +110,7 @@ export default class Transition extends React.Component {
     }
     
     render () {
-      var children = this.state.errorDetails ? Utils.parsePythonException(this.state.errorDetails) : null
+      var children = this.state.errorDetails ? Utils.parsePythonException(this.state.errorDetails) : <div/>
       var title = this.state.errorMessage ? this.state.errorMessage : "NetPyNE";
         
       if (this.state.openDialog) {
@@ -122,26 +122,53 @@ export default class Transition extends React.Component {
               <TextField label="Number of cores" onChange={event => this.setState({ cores: event.target.value })} className="netpyneRightField" type="number"/>
             </div>
           )
-          var actions = [<FlatButton onClick={() => {
-            this.closeTransition()
-          }} color="primary" key={"cancelActionBtn"} >CANCEL</FlatButton>, <FlatButton onClick={() => this.simulate()} id={"okRunSimulation"} color="primary" keyboardFocused={true} key={"runSimulationButton"} >Simulate</FlatButton>];
+          var actions = [
+            <Button 
+              label="CANCEL"
+              onClick={() => this.closeTransition()} 
+              key={"cancelActionBtn"} 
+            >CANCEL</Button>, 
+            <Button 
+              onClick={() => this.simulate()} id={"okRunSimulation"}
+              color="primary"
+              key={"runSimulationButton"} 
+            >Simulation</Button>
+          ];
         } else {
-          var actions = <FlatButton onClick={() => {
-            this.closeTransition()
-          }} key={"cancelActionBtn"} color="primary" >CANCEL</FlatButton>
-        }     
+          var actions = (
+            <Button
+              onClick={() => this.closeTransition() }
+              key={"cancelActionBtn"}
+              color="primary"
+            >CANCEL</Button>
+          )
+        }
       }
 
       if (this.props.tab == 'simulate' ) {
         var refreshInstanceButton = (
-          <IconButton id={"refreshInstanciatedNetworkButton"} key={"refreshInstanceButton"} onClick={() => this.instantiate({ usePrevInst: false })} style={{ position: 'absolute', right: 30, top: 60, width:'24px', height:'24px' }} tooltip={this.props.freezeInstance ? "Your network is in sync" : "Synchronise network"} tooltipPosition="bottom-left" disabled={this.props.freezeInstance} tooltipStyles={{ marginTop: -37, marginRight:10 }}>
-            <FontIcon color="secondary" className="fa fa-refresh"/>
-          </IconButton>
+          <IconButton 
+            color='secondary' 
+            id={"refreshInstanciatedNetworkButton"} 
+            key={"refreshInstanceButton"}
+            className="fa fa-refresh"
+            onClick={() => this.instantiate({ usePrevInst: false })} 
+            style={{ position: 'absolute', right: 30, top: 80, zIndex: 1 }} 
+            tooltip-data={this.props.freezeInstance ? "Your network is in sync" : "Synchronise network"} 
+            disabled={this.props.freezeInstance} 
+          />
         )
         var refreshSimulationButton = (
-          <IconButton id={"launchSimulationButton"} key={"refreshSimulationButton"} onClick={() => this.setState({ openDialog: true })} style={{ position: 'absolute', right: 30, top: 110, width:'24px', height:'24px' }} tooltip={this.props.freezeSimulation ? "You have already simulated your network" : "Simulate your network"} tooltipPosition="bottom-left" disabled={this.props.freezeSimulation} tooltipStyles={{ marginTop: -38, marginRight:10 }}>
-            <RocketIcon color="secondary" />
-          </IconButton>    
+          <IconButton 
+            color='secondary' 
+            id={"launchSimulationButton"} 
+            key={"refreshSimulationButton"} 
+            className="fa fa-rocket"
+            onClick={() => this.setState({ openDialog: true })} 
+            style={{ position: 'absolute', right: 30, top: 120, zIndex: 1 }} 
+            tooltip-data={this.props.freezeSimulation ? "You have already simulated your network" : "Simulate your network"} 
+            disabled={this.props.freezeSimulation} 
+          />
         )
       }
         
@@ -149,21 +176,19 @@ export default class Transition extends React.Component {
         <div>
           {refreshInstanceButton}
           {refreshSimulationButton}
+
           <Dialog
             open={this.state.openDialog}
             onClose={this.closeTransition}
             style={{ whiteSpace: "pre-wrap" }}
           >
-            <DialogTitle id="alert-dialog-slide-title">{title}</DialogTitle>
-            <DialogContent style={{ overflow: 'auto' }}>
-              <DialogContentText id="alert-dialog-slide-description">
-                {children}
-              </DialogContentText>
+            <DialogTitle>{title}</DialogTitle>
+            <DialogContent>
+              {children}
             </DialogContent>
             <DialogActions>
               {actions}
             </DialogActions>
-            
           </Dialog>
         </div>
       )
diff --git a/css/material.less b/css/material.less
index 84bfaa3..d4f502c 100644
--- a/css/material.less
+++ b/css/material.less
@@ -1,85 +1,8 @@
-@spacing: 16px;
-
 label {
   margin-top: 0px;
 }
 
-input[type="text"],
-input[type="number"] {
-  box-shadow   : none !important;
-  border-radius: 0px !important;
-}
-
-div.MuiExpansionPanelSummary-root {
-  h2 {
-    font-size: 1em;
-  }
-
-  .MuiTypography-subtitle1 {
-    font-size: 1em;
-    color    : grey;
-  }
-}
-
-div.MuiPaper-root {
-  color: black;
-}
-
-div.MuiCollapse-container .MuiCollapse-wrapper,
-div.MuiExpansionPanelSummary-root {
-  padding: @spacing;
-}
-div.MuiExpansionPanel-root.Mui-expanded {
-  margin: 2px;
-}
-.MuiExpansionPanel-root {
-  margin: 2px;
-}
-
-.MuiInput-root {
-  color      : #fff;
-  cursor     : text;
-  display    : inline-flex;
-  position   : relative;
-  font-size  : 1rem;
-  box-sizing : border-box;
-  align-items: center;
-  font-family: Roboto, Helvetica, Arial, sans-serif;
-  line-height: 1.1875em;
-
-  input {
-    line-height: 24px;
-    position                   : relative;
-    width                      : 100%;
-    border                     : none;
-    outline                    : none;
-    background-color           : rgba(0, 0, 0, 0);
-    color                      : rgba(0, 0, 0, 0.87);
-    cursor                     : inherit;
-    font                       : inherit;
-    opacity                    : 1;
-    -webkit-tap-highlight-color: rgba(0, 0, 0, 0);
-    height                     : 100%;
-  }
-
-}
-
-.MuiButton-root,
-.MuiFab-root {
-  font-size: 1em;
-  
-}
-
-.MuiFab-root{
-  text-transform: none;
-}
-
-label.MuiInputLabel-root, label.MuiFormLabel-root{
-  font-weight: bold;
-  color: rgba(0, 0, 0, 0.3);
-  padding: 4px
-}
-
-.MuiSelect-select{
-  min-width: 72px;
+input[type="text"], input[type="number"]{
+  box-shadow: none!important;
+  border-radius:0px!important;
 }
\ No newline at end of file
diff --git a/css/netpyne.less b/css/netpyne.less
index 9bbaafe..d67dc86 100644
--- a/css/netpyne.less
+++ b/css/netpyne.less
@@ -4,13 +4,14 @@ html,
 body {
   height: 100%;
   background: white !important;
-  font-size: 16px;
 }
+
 :root {
   --m2: 8px;
   --m4: 16px;
   --icon-size: 24px;
 }
+
 #footer {
   z-index: 2 !important;
 }
@@ -24,19 +25,30 @@ body {
   height: 100% !important;
 }
 
-button.actionButton {
+.actionButton {
   font-size: 15px;
   margin: 10px;
   width: 120px;
   height: 120px;
   float: left;
   cursor: pointer;
+}
+
+.actionButton button {
   overflow: visible!important;
+  width: 120px !important;
+  height: 120px !important;
   color: white;
   :hover {
     border-radius: 120px;
   }
+}
+
 
+.actionButton div {
+  width: 120px !important;
+  height: 120px !important;
+  display: table-cell;
   vertical-align: middle;
   text-align: center;
 }
@@ -48,6 +60,7 @@ button.actionButton {
   width: 70px !important;
   height: 70px !important;
   overflow: visible !important;
+  margin-top: 10px !important;
 }
 
 .smallActionButton button {
@@ -56,7 +69,7 @@ button.actionButton {
   height: 70px !important;
 }
 
-.smallActionButton .MuiFab-label {
+.smallActionButton div {
   border-radius: 40px;
   width: 69px !important;
   height: 70px !important;
@@ -125,6 +138,8 @@ button.actionButton {
   height: 24px !important;
   width: 24px !important;
   position: absolute !important;
+  top: 11px !important;
+  left: 12px !important;
   pointer-events: none;
 }
 .gearAddLabel {
@@ -221,7 +236,6 @@ button.actionButton {
 
 .netpyneField {
   width: 100% !important;
-  margin: 10px 0;
   > div:first-of-type {
     width: 95%;
     > div {
@@ -453,7 +467,6 @@ button.actionButton {
   opacity: 1;
 }
 
-
 .flex-row {
   display: flex;
   flex-direction: row; 
diff --git a/jest.config.js b/jest.config.js
deleted file mode 100644
index 771bf23..0000000
--- a/jest.config.js
+++ /dev/null
@@ -1,4 +0,0 @@
-module.exports = { 
-  "preset": "jest-puppeteer", 
-  "testRegex": "(/tests/jest-puppeteer/Test.*|(\\.|/)(test|spec))\\.[jt]sx?$"
-};
\ No newline at end of file
diff --git a/package-lock.json b/package-lock.json
deleted file mode 100644
index ad56337..0000000
--- a/package-lock.json
+++ /dev/null
@@ -1,18503 +0,0 @@
-{
-  "name": "geppetto-application",
-  "version": "1.0.0",
-  "lockfileVersion": 1,
-  "requires": true,
-  "dependencies": {
-    "3d-force-graph": {
-      "version": "1.58.1",
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-      "requires": {
-        "options": ">=0.0.5",
-        "ultron": "1.0.x"
-      }
-    },
-    "xml-name-validator": {
-      "version": "3.0.0",
-      "resolved": "https://registry.npmjs.org/xml-name-validator/-/xml-name-validator-3.0.0.tgz",
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-      "dev": true
-    },
-    "xmlhttprequest": {
-      "version": "1.8.0",
-      "resolved": "https://registry.npmjs.org/xmlhttprequest/-/xmlhttprequest-1.8.0.tgz",
-      "integrity": "sha1-Z/4HXFwk/vOfnWX197f+dRcZaPw="
-    },
-    "xtend": {
-      "version": "4.0.2",
-      "resolved": "https://registry.npmjs.org/xtend/-/xtend-4.0.2.tgz",
-      "integrity": "sha512-LKYU1iAXJXUgAXn9URjiu+MWhyUXHsvfp7mcuYm9dSUKK0/CjtrUwFAxD82/mCWbtLsGjFIad0wIsod4zrTAEQ=="
-    },
-    "y18n": {
-      "version": "4.0.0",
-      "resolved": "https://registry.npmjs.org/y18n/-/y18n-4.0.0.tgz",
-      "integrity": "sha512-r9S/ZyXu/Xu9q1tYlpsLIsa3EeLXXk0VwlxqTcFRfg9EhMW+17kbt9G0NrgCmhGb5vT2hyhJZLfDGx+7+5Uj/w==",
-      "dev": true
-    },
-    "yallist": {
-      "version": "2.1.2",
-      "resolved": "https://registry.npmjs.org/yallist/-/yallist-2.1.2.tgz",
-      "integrity": "sha1-HBH5IY8HYImkfdUS+TxmmaaoHVI=",
-      "dev": true
-    },
-    "yargs": {
-      "version": "3.10.0",
-      "resolved": "https://registry.npmjs.org/yargs/-/yargs-3.10.0.tgz",
-      "integrity": "sha1-9+572FfdfB0tOMDnTvvWgdFDH9E=",
-      "requires": {
-        "camelcase": "^1.0.2",
-        "cliui": "^2.1.0",
-        "decamelize": "^1.0.0",
-        "window-size": "0.1.0"
-      },
-      "dependencies": {
-        "camelcase": {
-          "version": "1.2.1",
-          "resolved": "https://registry.npmjs.org/camelcase/-/camelcase-1.2.1.tgz",
-          "integrity": "sha1-m7UwTS4LVmmLLHWLCKPqqdqlijk="
-        }
-      }
-    },
-    "yargs-parser": {
-      "version": "13.1.1",
-      "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-13.1.1.tgz",
-      "integrity": "sha512-oVAVsHz6uFrg3XQheFII8ESO2ssAf9luWuAd6Wexsu4F3OtIW0o8IribPXYrD4WC24LWtPrJlGy87y5udK+dxQ==",
-      "dev": true,
-      "requires": {
-        "camelcase": "^5.0.0",
-        "decamelize": "^1.2.0"
-      }
-    },
-    "yauzl": {
-      "version": "2.4.1",
-      "resolved": "https://registry.npmjs.org/yauzl/-/yauzl-2.4.1.tgz",
-      "integrity": "sha1-lSj0QtqxsihOWLQ3m7GU4i4MQAU=",
-      "dev": true,
-      "requires": {
-        "fd-slicer": "~1.0.1"
-      }
-    },
-    "zero-crossings": {
-      "version": "1.0.1",
-      "resolved": "https://registry.npmjs.org/zero-crossings/-/zero-crossings-1.0.1.tgz",
-      "integrity": "sha1-xWK9MRNkPzRDokXRJAa4i2m5qf8=",
-      "requires": {
-        "cwise-compiler": "^1.0.0"
-      }
-    }
-  }
-}
diff --git a/tests/casperjs/DefaultProjectsTests.js b/tests/casperjs/DefaultProjectsTests.js
deleted file mode 100644
index 0e8da26..0000000
--- a/tests/casperjs/DefaultProjectsTests.js
+++ /dev/null
@@ -1,112 +0,0 @@
-casper.test.begin('Geppetto default projects tests', function suite(test) {
-	casper.options.viewportSize = {
-			width: 1340,
-			height: 768
-	};
-
-	casper.on("page.error", function(msg, trace) {
-		this.echo("Error: " + msg, "ERROR");
-	});
-
-	// show page level errors
-	casper.on('resource.received', function (resource) {
-		var status = resource.status;
-		if (status >= 400) {
-			this.echo('URL: ' + resource.url + ' Status: ' + resource.status);
-		}
-	});
-
-	casper.start(urlBase+"org.geppetto.frontend", function () {
-		this.echo(urlBase+baseFollowUp+hhcellProject);
-		this.waitForSelector('div[project-id="1"]', function () {
-			this.echo("I've waited for the projects to load.");
-			test.assertExists('div#logo', "logo is found");
-			test.assertExists('div[project-id="1"]', "Project width id 1 from core bundle are present");
-			test.assertExists('div[project-id="3"]', "Project width id 3 from core bundle are present");
-			test.assertExists('div[project-id="4"]', "Project width id 4 from core bundle are present");
-			test.assertExists('div[project-id="5"]', "Project width id 5 from core bundle are present");
-			test.assertExists('div[project-id="6"]', "Project width id 6 from core bundle are present");
-			test.assertExists('div[project-id="8"]', "Project width id 8 from core bundle are present");
-			test.assertExists('div[project-id="9"]', "Project width id 9 from core bundle are present");
-			test.assertExists('div[project-id="16"]', "Project width id 16 from core bundle are present");
-			test.assertExists('div[project-id="18"]', "Project width id 18 from core bundle are present");
-			test.assertExists('div[project-id="58"]', "Project width id 58 from core bundle are present");
-		}, null, 3000);
-	});
-
-	/**Tests SingleComponentHH project**/
-	casper.thenOpen(urlBase+baseFollowUp+hhcellProject,function() {
-		casper.then(function(){testSingleCompononetHHProject(test);});
-	});
-
-	/**Tests Acnet project**/
-	casper.thenOpen(urlBase+baseFollowUp+acnetProject,function() {
-		casper.then(function(){testACNET2Project(test);});
-	});
-
-	/**Tests C302 project**/
-	casper.thenOpen(urlBase+baseFollowUp+c302Project,function() {
-		casper.then(function(){testC302NetworkProject(test);});
-	});
-
-	/**Tests CA1 project**/
-	casper.thenOpen(urlBase+baseFollowUp+ca1Project,function() {
-		casper.then(function(){ca1Test(test);});
-	});
-
-	/**Tests EyeWire project**/
-	casper.thenOpen(urlBase+baseFollowUp+eyeWire,function() {
-		casper.then(function(){launchTest(test,"EyeWireGanglionCell",45000);});
-	});
-
-	/**Tests Pharyngeal project**/
-	casper.thenOpen(urlBase+baseFollowUp+Pharyngeal,function() {
-		casper.then(function(){pharyngealTest(test);});
-	});
-
-	/**Tests cElegansConnectome project**/
-	casper.thenOpen(urlBase+baseFollowUp+cElegansConnectome,function() {
-		casper.then(function(){testC302Connectome(test);});
-	});
-
-	/**Tests cElegansMuscleModel project**/
-	casper.thenOpen(urlBase+baseFollowUp+cElegansMuscleModel,function() {
-		casper.then(function(){testPMuscleCellProject(test);});
-	});
-
-	/**Tests cElegansPVDR project**/
-	casper.thenOpen(urlBase+baseFollowUp+cElegansPVDR,function() {
-		casper.then(function(){testPVDRNeuronProject(test);});
-	});
-
-        /**Tests cylinders project**/
-	casper.thenOpen(urlBase+baseFollowUp+cylinders,function() {
-		casper.then(function(){testCylindersProject(test);});
-	});
-
-	casper.run(function() {
-		test.done();
-	});
-});
-
-function pharyngealTest(test){
-	casper.then(function(){launchTest(test,"Pharyngeal",45000);});
-	casper.then(function () {
-		casper.echo("Opening controls panel");
-		buttonClick("#controlPanelBtn");
-	});
-
-	casper.then(function(){
-		testInitialControlPanelValues(test,10);
-	});
-}
-
-function nwbSampleTest(test){
-	casper.waitForSelector('div[id="Popup1"]', function() {
-		this.echo("I've waited for Popup1 to load.");
-
-		this.waitForSelector('div[id="Popup2"]', function() {
-			this.echo("I've waited for Popup2 component to load.");
-		});
-	}, null, 30000);
-}
diff --git a/tests/casperjs/GeppettoModelTests.js b/tests/casperjs/GeppettoModelTests.js
deleted file mode 100644
index 723cea4..0000000
--- a/tests/casperjs/GeppettoModelTests.js
+++ /dev/null
@@ -1,206 +0,0 @@
-casper.test.begin('Geppetto Model Factory and Injected Capabilities Tests', function suite(test) {
-	casper.options.viewportSize = {
-			width: 1340,
-			height: 768
-	};
-
-	casper.on("page.error", function(msg, trace) {
-		this.echo("Error: " + msg, "ERROR");
-	});
-
-	// show page level errors
-	casper.on('resource.received', function (resource) {
-		var status = resource.status;
-		if (status >= 400) {
-			this.echo('URL: ' + resource.url + ' Status: ' + resource.status);
-		}
-	});
-
-	casper.start(urlBase+"org.geppetto.frontend", function () {
-		this.echo(urlBase+baseFollowUp+hhcellProject);
-		//testing with project ACNET
-		this.waitForSelector('div[project-id="5"]', function () {
-			this.echo("I've waited for the projects to load.");
-			test.assertExists('div#logo', "logo is found");
-			test.assertExists('div[project-id="5"]', "Project width id 5 from core bundle present");
-		}, null, 3000);
-	});
-
-	/**Tests model factory and injected capabilities using Primary Auditory Cortex Network project**/
-	casper.thenOpen(urlBase+baseFollowUp+acnetProject,function() {
-		casper.then(function(){testUsingSingleCompononetHHProject(test);});
-	});
-
-	casper.run(function() {
-		test.done();
-	});
-});
-
-/**
- * Tests model factory and injected capabilities using the  Primary Auditory Cortex Network project.
- */
-function testUsingSingleCompononetHHProject(test){
-	casper.then(function(){launchTest(test,"Primary Auditory Cortex Network",30000);});
-	casper.echo("------------STARTING ACNET TEST--------------");
-	casper.then(function(){removeAllPlots();});
-
-	/*Start Testing Model Factory*/
-	casper.echo("----Start Testing Model Factory----");
-	casper.then(function () {
-		var modelDefined = casper.evaluate(function() {return window.Model != undefined;});
-		test.assertEquals(modelDefined, true, "Model is not undefined");
-	});
-
-	casper.then(function () {
-		var modelVariables = casper.evaluate(function() {return window.Model.getVariables().length;});
-		test.assertEquals(modelVariables, 2, "2 Variables as expected");
-	});
-
-	casper.then(function () {
-		var modelLibraries = casper.evaluate(function() {return window.Model.getLibraries().length;});
-		test.assertEquals(modelLibraries, 2, "2 Libraries as expected");
-	});
-
-	casper.then(function () {
-		var modelInstanceDefined = casper.evaluate(function() {return window.Instances != undefined;});
-		test.assertEquals(modelInstanceDefined, true, "Instances are not undefined");
-	});
-
-	casper.then(function () {
-		var modelTopLevelInstances = casper.evaluate(function() {return window.Instances.length;});
-		test.assertEquals(modelTopLevelInstances, 2, "2 top level instance as expected");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return window.acnet2 != undefined && window.acnet2.baskets_12 != undefined;
-		}, "Shortcuts created as expected. Tested with acnet and acnet.baskets_12");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return window.acnet2.pyramidals_48.getChildren().length === 48 && window.acnet2.baskets_12.getChildren().length === 12;
-		},"Visual types exploded into instances as expected. Tested with acnet2.pyramidals_48 and acnet2.baskets_12");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return GEPPETTO.ModelFactory.resolve('//@libraries.1/@types.5').getId() == window.Model.getLibraries()[1].getTypes()[5].getId() &&
-			GEPPETTO.ModelFactory.resolve('//@libraries.1/@types.5').getMetaType() == window.Model.getLibraries()[1].getTypes()[5].getMetaType();
-		},"Ref string resolved to Type as expected. Tested with referencef : //@libraries.1/@types.5");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return acnet2.baskets_12[0].getTypes().length == 1 &&
-			acnet2.baskets_12[0].getTypes()[0].getId() ==  'bask' &&
-			acnet2.baskets_12[0].getTypes()[0].getMetaType() == 'CompositeType';
-		},"Type in the model resolved as expected. Tested with acnet2.baskets_12[0]");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups().length == 3 &&
-			acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups()[0].getId() == 'Cell_Regions' &&
-			(acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups()[1].getId() == 'Kdr_bask' ||
-					acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups()[1].getId() == 'Kdr_bask') &&
-					(acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups()[2].getId() == 'Na_bask' ||
-							acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups()[2].getId() == 'Na_bask');
-		},'Visual groups created as expected. Tested with acnet2.baskets_12[0]');
-	});	
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getType()).length == 12 &&
-			GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getType().getPath()).length == 12 &&
-			GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getType())[0].getId() == "baskets_12[0]" &&
-			GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getType())[0].getMetaType() == "ArrayElementInstance";
-		}, 'getAllInstanceOf returning instances as expected for Type and Type path. Tested with acnet2.baskets_12[0]');
-	});	
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getVariable()).length == 1 &&
-			GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getVariable().getPath()).length == 1 &&
-			GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getVariable())[0].getId() == "baskets_12" &&
-			GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getVariable())[0].getMetaType() == "ArrayInstance";
-		},'getAllInstanceOf returning instances as expected for Variable and Variable path. Tested with acnet2.baskets_12[0]');
-	});	
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return GEPPETTO.ModelFactory.allPathsIndexing.length == 9741 &&
-			GEPPETTO.ModelFactory.allPathsIndexing[0].path == 'acnet2' &&
-			GEPPETTO.ModelFactory.allPathsIndexing[0].metaType == 'CompositeType' &&
-			GEPPETTO.ModelFactory.allPathsIndexing[9741 - 1].path == "acnet2.SmallNet_bask_bask.GABA_syn_inh.GABA_syn_inh" &&
-			GEPPETTO.ModelFactory.allPathsIndexing[9741 - 1].metaType == 'StateVariableType';
-		},"All potential instance paths exploded as expected");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v').length == 456 &&
-			GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v')[0] == 'acnet2.pyramidals_48[0].soma_0.v' &&
-			GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v')[333] == 'acnet2.pyramidals_48[45].basal0_6.v' &&
-			GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v')[456 - 1] == 'acnet2.baskets_12[11].dend_1.v';
-		},"getAllPotentialInstancesEndingWith .v returning expected paths");
-	});
-
-	casper.then(function () {
-		var instances = casper.evaluate(function() {return window.Instances.getInstance('acnet2.baskets_12[3]').getInstancePath();});
-		test.assertEquals(instances, 'acnet2.baskets_12[3]', "Instances.getInstance creates and fetches instance as expected. Tested with acnet2.baskets_12[3]");
-	});
-
-	casper.then(function () {
-		var instances = casper.evaluate(function() {return window.Instances.getInstance('acnet2.baskets_12[3].soma_0.v').getInstancePath();});
-		test.assertEquals(instances, 'acnet2.baskets_12[3].soma_0.v', 
-		"Instances.getInstance creates and fetches instance as expected. Tested with acnet2.baskets_12[3].soma_0.v");
-	});
-
-	casper.then(function () {
-		var instances = casper.evaluate(function() {window.Instances.getInstance('acnet2.baskets_12[3].sticaxxi')==undefined;});
-		test.assertEquals(instances, null, "Trying to fetch something that does not exist in the model throws exception");
-	});
-
-	/*Start Testing Injected Capabilities*/
-	casper.echo("----Start Testing Injected Capabilities----");
-	casper.then(function () {
-		test.assertEval(function() {
-			return window.acnet2.baskets_12[0].hasCapability(GEPPETTO.Resources.VISUAL_CAPABILITY);
-		},"Visual capability injected to instances of visual types. Tested with acnet2.baskets_12[0]");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return window.acnet2.baskets_12[0].getType().hasCapability(GEPPETTO.Resources.VISUAL_CAPABILITY);
-		},"Visual capability injected to types with visual types. Tested with acnet2.baskets_12[0]");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return window.Model.neuroml.network_ACnet2.temperature.hasCapability(GEPPETTO.Resources.PARAMETER_CAPABILITY);
-		},"Parameter capability injected to parameter instances. Tested with Model.neuroml.network_ACnet2.temperature");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return window.acnet2.pyramidals_48[0].hasCapability(GEPPETTO.Resources.VISUAL_GROUP_CAPABILITY);
-		}, "Visual group capability injected to instances of visual types with visual groups. Tested with acnet2.pyramidals_48[0]");
-	});
-
-	casper.then(function () {
-		var getAllVariablesOfMetaType = casper.evaluate(function() {
-			var meta = GEPPETTO.ModelFactory.getAllTypesOfMetaType(GEPPETTO.Resources.COMPOSITE_TYPE_NODE);
-			var vars = GEPPETTO.ModelFactory.getAllVariablesOfMetaType(meta, 'ConnectionType')[0];
-			return vars.hasCapability(GEPPETTO.Resources.CONNECTION_CAPABILITY);
-		});
-		test.assertEquals(getAllVariablesOfMetaType, true, "Connection capability injected to variables of ConnectionType.");
-	});
-
-	casper.then(function () {
-		var getAllVariablesOfMetaType = casper.evaluate(function() {
-			return window.acnet2.pyramidals_48[0].getConnections()[0].hasCapability(GEPPETTO.Resources.CONNECTION_CAPABILITY);
-		});
-		test.assertEquals(getAllVariablesOfMetaType, true, "Connection capability injected to instances of connection types. Tested with acnet2.pyramidals_48[0]");
-	});
-}
\ No newline at end of file
diff --git a/tests/casperjs/LiveTests.js b/tests/casperjs/LiveTests.js
deleted file mode 100644
index 62ff1d4..0000000
--- a/tests/casperjs/LiveTests.js
+++ /dev/null
@@ -1,23 +0,0 @@
-casper.test.begin('Geppetto basic tests', 5, function suite(test) {
-    casper.start("http://live.geppetto.org", function() {
-        this.waitForSelector('div[project-id="1"]', function() {
-            this.echo("I've waited for 10 seconds.");
-            test.assertTitle("geppetto's home", "geppetto's homepage title is the one expected");
-            test.assertExists('div[id="logo"]', "logo is found");
-            this.mouseEvent('dblclick','div[project-id="1"]');
-        }, null, 30000);
-    });
-
-    casper.thenOpen("https://live.geppetto.org/geppetto?load_project_from_id=1",function() {
-        this.waitForSelector('div[id="Popup1"]', function() {
-            this.echo("I've waited for the popups to load.");
-            test.assertTitle("geppetto", "geppetto title is ok");
-            test.assertUrlMatch(/load_project_from_id=1/, "project load attempted");
-            test.assertExists('div[id="Popup1"]', "geppetto loads the description popup");
-        }, null, 30000);
-    });
-
-    casper.run(function() {
-        test.done();
-    });
-});
\ No newline at end of file
diff --git a/tests/casperjs/NeuronalProjectsTests.js b/tests/casperjs/NeuronalProjectsTests.js
deleted file mode 100644
index 1e0a3cf..0000000
--- a/tests/casperjs/NeuronalProjectsTests.js
+++ /dev/null
@@ -1,75 +0,0 @@
-casper.test.begin('Geppetto neuronal projects tests', function suite(test) {
-	casper.options.viewportSize = {
-			width: 1340,
-			height: 768
-	};
-
-	casper.on("page.error", function(msg, trace) {
-		this.echo("Error: " + msg, "ERROR");
-	});
-
-	// show page level errors
-	casper.on('resource.received', function (resource) {
-		var status = resource.status;
-		if (status >= 400) {
-			this.echo('URL: ' + resource.url + ' Status: ' + resource.status);
-		}
-	});
-
-	casper.start(urlBase+"org.geppetto.frontend", function () {
-		this.echo(urlBase+baseFollowUp+hhcellProject);
-		this.waitForSelector('div[project-id="1"]', function () {
-			this.echo("I've waited for the projects to load.");
-			test.assertExists('div#logo', "logo is found");
-			test.assertExists('div[project-id="1"]', "Project width id 1 from core bundle are present");
-			test.assertExists('div[project-id="3"]', "Project width id 3 from core bundle are present");
-			test.assertExists('div[project-id="4"]', "Project width id 4 from core bundle are present");
-			test.assertExists('div[project-id="5"]', "Project width id 5 from core bundle are present");
-			test.assertExists('div[project-id="6"]', "Project width id 6 from core bundle are present");
-			test.assertExists('div[project-id="8"]', "Project width id 8 from core bundle are present");
-			test.assertExists('div[project-id="9"]', "Project width id 9 from core bundle are present");
-			test.assertExists('div[project-id="16"]', "Project width id 16 from core bundle are present");
-			test.assertExists('div[project-id="18"]', "Project width id 18 from core bundle are present");
-			test.assertExists('div[project-id="58"]', "Project width id 58 from core bundle are present");
-		}, null, 3000);
-	});
-
-	/**Tests SingleComponentHH project**/
-	casper.thenOpen(urlBase+baseFollowUp+hhcellProject,function() {
-		casper.then(function(){testSingleCompononetHHProject(test);});
-	});
-
-	/**Tests Primary Auditory Cortex Network project**/
-	casper.thenOpen(urlBase+baseFollowUp+acnetProject,function() {
-		casper.then(function(){testACNET2Project(test);});
-	});
-
-	/**Tests C302 Network project**/
-	casper.thenOpen(urlBase+baseFollowUp+c302Project,function() {
-		casper.then(function(){testC302NetworkProject(test);});
-	});
-
-	/**Tests CA1 project**/
-	casper.thenOpen(urlBase+baseFollowUp+ca1Project,function() {
-		casper.then(function(){ca1Test(test);});
-	});
-
-	/**Tests C.elegans PVDR Neuron morphology project**/
-	casper.thenOpen(urlBase+baseFollowUp+cElegansPVDR,function() {
-		casper.then(function(){testPVDRNeuronProject(test);});
-	});
-
-	/**Tests PMuscle cell NEURON project**/
-	casper.thenOpen(urlBase+baseFollowUp+cElegansMuscleModel,function() {
-		casper.then(function(){testPMuscleCellProject(test);});
-	});
-
-	/**Tests cElegansConnectome project**/
-	casper.thenOpen(urlBase+baseFollowUp+cElegansConnectome,function() {
-		casper.then(function(){testC302Connectome(test);});
-	});
-
-	casper.run(function() {
-		test.done();
-	});
-});
\ No newline at end of file
diff --git a/tests/casperjs/NeuronalTestsLogic.js b/tests/casperjs/NeuronalTestsLogic.js
deleted file mode 100644
index 4c6830f..0000000
--- a/tests/casperjs/NeuronalTestsLogic.js
+++ /dev/null
@@ -1,825 +0,0 @@
-/**
- * Main method for testing the HHCEll project
- * @returns
- */
-function testSingleCompononetHHProject(test,name){
-    casper.then(function(){launchTest(test,"Single Component HH Project",45000);});
-    casper.echo("------------STARTING HHCELL TEST--------------");
-    casper.then(function(){
-    	casper.waitUntilVisible('div[id="Plot2"]', function () {
-    		casper.echo("-------Testing Widgets--------");
-    		casper.wait(2000, function(){
-        		//test plot widgets have expected amount of graphs by counting G elements plotly draws
-        		testPlotWidgets(test,"Plot1","hhcell.hhpop[0].v", 1);
-        		testPlotWidgets(test,"Plot2","hhcell.hhpop[0].bioPhys1.membraneProperties.naChans.na.m.q",3);
-           	});
-    	});
-    });
-    casper.then(function () {
-		var experiments = casper.evaluate(function() {return window.Project.getExperiments().length;});
-		test.assertEquals(experiments, 1, "Initial amount of experiments for hhcell checked");
-	});
-    
-    casper.then(function () {
-		var evaluate = casper.evaluate(function() {return hhcell!=null;});
-		test.assertEquals(evaluate,true, "Top level instance present");
-	});
-    
-	casper.then(function () {
-		test.assertEval(function() {
-			return window.Model.getVariables() != undefined && window.Model.getVariables().length == 2 &&
-			window.Model.getVariables()[0].getId() == 'hhcell' && window.Model.getVariables()[1].getId() == 'time';
-		},"2 top Variables as expected for hhcell");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return window.Model.getLibraries() != undefined && window.Model.getLibraries().length == 2;
-		},"2 Libraries as expected for hhcell");
-	});
-
-	casper.then(function () {
-		test.assertEval(function() {
-			return window.Instances != undefined && window.Instances.length == 2 && window.Instances[0].getId() == 'hhcell';
-		},"1 top level instance as expected for hhcell");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return hhcell.hhpop[0].bioPhys1.membraneProperties.naChans.na.h.q.getTimeSeries().length==6001;
-		},"Checking that time series length is 6001 in variable for hhcell project");
-    });
-    
-    casper.then(function(){
-    	casper.evaluate(function() {
-            Plot1.plotData(hhcell.hhpop[0].v);
-        });
-    });
-    casper.then(function(){
-    	testPlotWidgets(test,"Plot1","hhcell.hhpop[0].v", 1);
-    });
-    casper.then(function(){
-        removeAllPlots();
-    });
-    casper.then(function(){
-        casper.echo("-------Testing Camera Controls--------");
-        testCameraControls(test, [0,0,30.90193733102435]);
-    });
-    casper.then(function () {
-        casper.echo("Opening controls panel");
-        buttonClick("#controlPanelBtn");
-    });
-    casper.then(function(){
-        casper.echo("-------Testing Control Panel--------");
-        testInitialControlPanelValues(test,3);
-    });
-    casper.then(function(){
-        casper.echo("-------Testing Mesh Visibility--------");
-        testVisibility(test,"hhcell.hhpop[0]","#hhcell_hhpop_0__visibility_ctrlPanel_btn");
-    });
-    casper.then(function () {
-        casper.echo("-------Testing Plotting from Control Panel--------");
-        buttonClick("#stateVariablesFilterBtn");
-    });
-    casper.then(function () {
-        this.waitUntilVisible('button[id="hhcell_hhpop_0__v_plot_ctrlPanel_btn"]', function () {
-            buttonClick("#hhcell_hhpop_0__v_plot_ctrlPanel_btn");
-        });	
-    });
-    casper.then(function(){
-        this.waitUntilVisible('div[id="Plot1"]', function () {
-            this.echo("I've waited for Plot1 to come up");
-        });
-    });	
-
-    casper.then(function(){
-        buttonClick("#anyProjectFilterBtn");
-        removeAllPlots();
-    });
-
-    casper.then(function(){
-        removeAllPlots();
-        var rows = casper.evaluate(function() {
-            var rows = $(".standard-row").length;
-            return rows;
-        });
-        test.assertEquals(rows, 10, "Correct amount of rows for Global filter");
-        casper.evaluate(function() {
-            $("#controlpanel").hide();
-        });
-    });
-
-    casper.then(function(){
-        casper.echo("-------Testing Spotlight--------");
-        testSpotlight(test, "hhcell.hhpop[0].v",'div[id="Plot1"]',true,false,"hhcell","hhcell.hhpop[0]");
-    });
-
-    casper.then(function () {
-        closeSpotlight();
-        //adding few widgets to the project to test View state later
-        casper.evaluate(function(){
-            GEPPETTO.ComponentFactory.addWidget('CANVAS', {name: '3D Canvas', id: "Canvas2"}, function () {this.setName('Widget Canvas');this.setPosition();this.display([hhcell])});
-            Plot1.setPosition(0,300);
-            G.addWidget(1).then(w=>{w.setMessage("Hhcell popup");});
-            G.addWidget(1).then(w=>{w.setMessage("Hhcell popup 2").addCustomNodeHandler(function(){},'click');});
-        });
-    });
-
-    casper.then(function () {
-        //toggle tutorial if tutorial button exists
-        if(casper.exists('#tutorialBtn')){
-            casper.mouseEvent('click', 'button#tutorialBtn', "attempting to open tutorial");
-            //click on next step for Tutorial
-            casper.evaluate(function () {
-                var nextBtnSelector = $(".nextBtn");
-                nextBtnSelector.click();
-                nextBtnSelector.click();
-            });
-        }
-    });
-
-    casper.then(function () {
-        //tests widget canvas has mesh
-        var mesh = casper.evaluate(function(){
-            var mesh = Canvas2.engine.getRealMeshesForInstancePath("hhcell.hhpop[0]").length;
-            return mesh;
-        });
-        test.assertEquals(mesh, 1, "Canvas widget has hhcell");
-    });
-
-    casper.then(function(){	
-        casper.echo("-------Testing Camera Controls on main Canvas and Canvas widget--------");
-        testCameraControlsWithCanvasWidget(test, [0,0,30.90193733102435]);
-    });
-
-    //test color Function
-    casper.then(function(){
-        var initialColorFunctions = casper.evaluate(function(){
-            return GEPPETTO.SceneController.getColorFunctionInstances().length;
-        });
-        casper.echo("-------Testing Color Function--------");
-        //add color Function
-        casper.evaluate(function(){
-            GEPPETTO.SceneController.addColorFunction(GEPPETTO.ModelFactory.instances.getInstance(GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v'),false), window.voltage_color);
-            Project.getActiveExperiment().play({step:10});
-        });
-        var colorFunctionInstances = casper.evaluate(function(){
-            return GEPPETTO.SceneController.getColorFunctionInstances().length;
-        });
-        test.assertNotEquals(initialColorFunctions,colorFunctionInstances, "More than one color function instance found");
-        //test3DMeshColorNotEquals(test,defaultColor,"hhcell.hhpop[0]");
-        casper.echo("Done Playing, now exiting");
-    });
-
-    //reload test, needed for testing view comes up
-    casper.then(function(){launchTest(test,"Hhcell",30000);});
-
-    //testing widgets stored in View state come up
-    casper.then(function(){
-        test.assertVisible('div#Canvas2', "Canvas2 is correctly open on reload.");
-        test.assertVisible('div#Plot1', "Plot1 is correctly open on reload");
-        test.assertVisible('div#Popup1', "Popup1 is correctly open on reload");
-        test.assertVisible('div#Popup2', "Popup2 is correctly open on reload");
-
-        //if tutorial button exists, tests existence of Tutorial
-        if(casper.exists('#tutorialBtn')){
-            test.assertVisible('div#Tutorial1', "Tutorial1 is correctly open on reload");
-            var tutorialStep = casper.evaluate(function() {
-                return Tutorial1.state.currentStep;
-            });
-            test.assertEquals(tutorialStep, 2, "Tutorial1 step restored correctly");
-        }
-        //Tests content of Popup1 
-        var popUpMessage = casper.evaluate(function() {
-            return $("#Popup1").html();
-        });
-        test.assertEquals(popUpMessage, "Hhcell popup", "Popup1 message restored correctly");
-
-        //Tests popup has custom handlers
-        var popUpCustomHandler = casper.evaluate(function() {
-            return Popup2.customHandlers;
-        });
-        test.assertEquals(popUpCustomHandler.length, 1, "Popup2 custom handlers restored correctly");
-        test.assertEquals(popUpCustomHandler[0]["event"], "click", "Popup2 custom handlers event restored correctly");
-
-        //Test canvas widget has mesh 
-        var meshInCanvas2Exists = casper.evaluate(function() {
-            var mesh = Canvas1.engine.meshes["hhcell.hhpop[0]"];
-            if(mesh!=null && mesh!=undefined){
-                return true;
-            }
-            return false;
-        });
-        test.assertEquals(meshInCanvas2Exists, true, "Canvas2 hhcell set correctly");
-    });	
-}
-
-/**
- * Main method for testing ACNet
- */
-function testACNET2Project(test){
-    casper.then(function(){launchTest(test,"ACNET2",45000);});
-    casper.echo("------------Starting Primary Auditory Cortary Test--------------");
-    casper.then(function () {
-		var experiments = casper.evaluate(function() {return window.Project.getExperiments().length;});
-		test.assertEquals(experiments, 2, "Initial amount of experiments for ACNE2 checked");
-	});
-    
-    casper.then(function () {
-		var evaluate = casper.evaluate(function() {return acnet2!=null;});
-		test.assertEquals(evaluate,true, "Top level instance present");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return acnet2.baskets_12[3] != undefined && acnet2.pyramidals_48[12] != undefined;
-		},"Instances exploded as expected");
-	});
-    
-    casper.page.onCallback = function(){
-    	test.assertEval(function() {
-			return acnet2.baskets_12[9].getConnections().length===60 && acnet2.pyramidals_48[23].getConnections().length===22;
-		},"bask and pyramidal connections check after resolveAllImportTypes() call.");
-    };
-    
-    casper.then(function () {
-		casper.evaluate(function() {Model.neuroml.resolveAllImportTypes(window.callPhantom);});
-	});
-    
-    casper.then(function () {
-    	test.assertEval(function() {
-    		return acnet2.pyramidals_48[23].getVisualGroups().length==5;
-    	},"Test number of Visual Groups on pyramidals");
-    });
-
-    casper.then(function () {
-    	test.assertEval(function() {
-    		return acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups().length==3;
-    	},"Test number of Visual Groups on acnet2.baskets_12[0]");
-    });
-    
-    casper.then(function () {
-    	test.assertEval(function() {
-    		return acnet2.pyramidals_48[23].getVisualGroups().length==5;
-    	},"Test number of Visual Groups on pyramidals");
-    });
-
-    casper.then(function () {
-    	test.assertEval(function() {
-			return window.Model.getVariables() != undefined && window.Model.getVariables().length == 2 &&
-            window.Model.getVariables()[0].getId() == 'acnet2' && window.Model.getVariables()[1].getId() == 'time';
-		},"2 top Variables as expected for ACNET2");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Model.getLibraries() != undefined && window.Model.getLibraries().length == 2;
-		},"2 Libraries as expected for ACNET2");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Instances != undefined && window.Instances.length == 2 && window.Instances[0].getId() == 'acnet2';
-		},"1 top level instance as expected for ACNET2");
-	});
-    
-    casper.then(function(){
-        removeAllPlots();
-    });
-    casper.then(function(){
-        casper.echo("-------Testing Camera Controls--------");
-        testCameraControls(test,[231.95608349343888,508.36555704435455,1849.839]);
-    });
-    casper.then(function () {
-        casper.echo("-------Testing Original Color--------");
-        test3DMeshColor(test,[0.796078431372549,0,0],"acnet2.pyramidals_48[0]");
-        test3DMeshColor(test,[0.796078431372549,0,0],"acnet2.pyramidals_48[47]");
-        test3DMeshColor(test,[0,0.2,0.596078431372549],"acnet2.baskets_12[0]");
-        test3DMeshColor(test,[0,0.2,0.596078431372549],"acnet2.baskets_12[11]");
-        this.echo("Opening controls panel");
-        buttonClick("#controlPanelBtn");
-    });
-
-    casper.then(function () {
-        casper.echo("-------Testing Control Panel--------");
-        testInitialControlPanelValues(test,10);
-    });
-    casper.then(function(){
-        casper.echo("-------Testing Mesh Visibility--------");
-        testVisibility(test,"acnet2.pyramidals_48[0]","#acnet2_pyramidals_48_0__visibility_ctrlPanel_btn");
-    });
-    casper.then(function () {
-        casper.echo("-------Testing Plotting from Control Panel--------");
-        buttonClick("#stateVariablesFilterBtn");
-    });
-
-    casper.then(function () {
-        this.waitUntilVisible('button[id="acnet2_pyramidals_48_0__soma_0_v_plot_ctrlPanel_btn"]', function () {
-            buttonClick("#acnet2_pyramidals_48_0__soma_0_v_plot_ctrlPanel_btn");
-        });	
-    });
-
-    casper.then(function () {
-        this.waitUntilVisible('div[id="Plot1"]', function () {
-            test.assertExists('div[id="Plot1"]', "Plot1 exists");
-            casper.evaluate(function() {
-                $("#controlpanel").hide();
-            });			
-        });
-    });
-
-    casper.then(function(){
-        removeAllPlots(); //removes exisiting plots for clearer view
-    });
-
-    casper.then(function () {
-        casper.echo("-------Testing Spotlight--------");
-        testSpotlight(test, "acnet2.pyramidals_48[1].soma_0.v",'div[id="Plot1"]',true,true,"acnet2.pyramidals_48[0]","acnet2.pyramidals_48[0]");	
-        this.mouseEvent('click', 'i.fa-search', "attempting to close spotlight");
-    });
-
-    casper.then(function () {
-        casper.echo("-------Testing Connected cells to Instance--------");
-
-        //testing right amount of connection lines are shown
-        testingConnectionLines(test,23);
-
-        //testing that connected cells of acnet2.pyramidals_48[0] have changed color
-        test3DMeshColorNotEquals(test,defaultColor, "acnet2.baskets_12[4]");
-        test3DMeshColor(test,[0.39215686274509803,0.5882352941176471,0.08235294117647059], "acnet2.baskets_12[4]");
-
-        test3DMeshColorNotEquals(test,defaultColor, "acnet2.baskets_12[1]");
-        test3DMeshColor(test,[1,0.35294117647058826,0.00784313725490196], "acnet2.baskets_12[1]");
-
-        //test they are ghosted
-        test3DMeshOpacity(test,0.3, "acnet2.baskets_12[4]");
-        test3DMeshOpacity(test,0.3, "acnet2.baskets_12[1]");
-
-    });
-
-    casper.then(function () {
-        testSpotlight(test, "acnet2.pyramidals_48[0].biophys.membraneProperties.Ca_pyr_soma_group.gDensity",'div[id="Plot1"]',false,false,"acnet2.pyramidals_48[0]");	
-    });
-
-    casper.then(function () {
-        casper.evaluate(function(){
-            acnet2.pyramidals_48[0].deselect();
-        });
-
-        //test these cells are no longer ghosted
-        test3DMeshOpacity(test,1, "acnet2.baskets_12[1]");
-        test3DMeshOpacity(test,1, "acnet2.baskets_12[4]");
-    });
-
-    casper.then(function () {
-        closeSpotlight(); //close spotlight before continuing
-        casper.echo("-------Testing Canvas Widget and Camera Controls--------");
-
-        //adding few widgets to the project to test View state later
-        casper.evaluate(function(){
-            GEPPETTO.ComponentFactory.addWidget('CANVAS', {name: '3D Canvas',}, function () {this.setName('Widget Canvas');this.setPosition();this.display([acnet2])});
-            Plot1.setPosition(0,300); // get out of the way 
-            acnet2.baskets_12[4].getVisualGroups()[0].show(true);
-        });		
-    });
-
-    casper.then(function () {
-        //tests camera controls are working by checking camera has moved
-        testCameraControlsWithCanvasWidget(test,[231.95608349343888,508.36555704435455,1849.839]);
-    });
-
-    casper.then(function () {
-        //applies visual group to instance and tests colors
-        testVisualGroup(test,"acnet2.baskets_12[0]",2,[[],[0,0.4,1],[0.6,0.8,0]]);	
-        testVisualGroup(test,"acnet2.baskets_12[5]",2,[[],[0,0.4,1],[0.6,0.8,0]]);
-    });
-
-    casper.then(function(){
-        casper.echo("Testing setGeometry");
-
-        casper.evaluate(function(){
-            acnet2.pyramidals_48[0].setGeometryType("cylinders")
-        });
-
-        //test mesh set geometry
-        var meshType = casper.evaluate(function(){
-            return Canvas1.engine.getRealMeshesForInstancePath("acnet2.pyramidals_48[0]")[0].type;
-        });
-        test.assertEquals(meshType, "Mesh", "Correctly set mesh to cylinders");
-
-        var meshTotal = casper.evaluate(function(){
-            return Object.keys(Canvas1.engine.meshes).length;
-        });
-        test.assertEquals(meshTotal, 60, "Correctly amount of meshes after applying cylinders");
-
-        //retrieve original color pre setGeomtry
-        var color = getMeshColor(test,"acnet2.pyramidals_48[0]");
-        casper.evaluate(function(){
-            acnet2.pyramidals_48[0].setGeometryType("lines")
-        });
-
-        casper.echo("Testing color post setGeometryType");
-        test3DMeshColor(test,color,"acnet2.pyramidals_48[0]");
-
-        //test mesh set geometry
-        meshType = casper.evaluate(function(){
-            return Canvas1.engine.getRealMeshesForInstancePath("acnet2.pyramidals_48[0]")[0].type;
-        });
-        test.assertEquals(meshType, "LineSegments", "Correctly set mesh to lines");
-
-        //testsing same amount of meshes exists after changing a mesh to lines
-        var meshTotal = casper.evaluate(function(){
-            return Object.keys(Canvas1.engine.meshes).length;
-        });
-        test.assertEquals(meshTotal, 60, "Correctly amount of meshes after applying cylinders");
-
-        //Set geometry type to cylinders
-        casper.evaluate(function(){
-            acnet2.pyramidals_48[0].setGeometryType("cylinders")
-        });
-
-        //test  set geometry type in a mesh
-        var meshType = casper.evaluate(function(){
-            return Canvas1.engine.getRealMeshesForInstancePath("acnet2.pyramidals_48[0]")[0].type;
-        });
-        test.assertEquals(meshType, "Mesh", "Correctly set mesh to cylinders");
-
-        casper.echo("Testing color post setGeometryType to cylinders");
-        test3DMeshColor(test,color,"acnet2.pyramidals_48[0]");
-
-        //testing same amount of meshes exists after changing a mesh to cylinders
-        var meshTotal = casper.evaluate(function(){
-            return Object.keys(Canvas1.engine.meshes).length;
-        });
-        test.assertEquals(meshTotal, 60, "Correctly amount of meshes after applying cylinders");
-    });
-
-    casper.then(function () {
-        var initialColorFunctions = casper.evaluate(function(){
-            return GEPPETTO.SceneController.getColorFunctionInstances().length;
-        });
-        casper.echo("-------Testing Color Function--------");
-        //add color Function
-        casper.evaluate(function(){
-            GEPPETTO.SceneController.addColorFunction(GEPPETTO.ModelFactory.instances.getInstance(GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v'),false), window.voltage_color);
-            Project.getActiveExperiment().play({step:10});
-        });
-        var colorFunctionInstances = casper.evaluate(function(){
-            return GEPPETTO.SceneController.getColorFunctionInstances().length;
-        });
-        test.assertNotEquals(initialColorFunctions,colorFunctionInstances, "More than one color function instance found");
-        //		casper.wait(2000, function(){
-        //			//test color function
-        //			test3DMeshColorNotEquals(test,defaultColor,"acnet2.baskets_12[2].soma_0");
-        //		});
-        casper.echo("Done Playing, now exiting");
-    });
-}
-
-function testC302NetworkProject(test){
-    casper.then(function(){launchTest(test,"C302",45000);});
-    casper.echo("------------STARTING C302 NETWORK TEST--------------");
-    
-    casper.then(function(){
-    	casper.waitUntilVisible('div[id="Plot1"]', function () {
-    		this.echo("I've waited for Plot1 to load.");
-    		test.assertExists('div[id="Plot1"]', "geppetto loads the initial Plot1");
-
-    		casper.then(function(){
-    			casper.waitUntilVisible('div[id="loading-spinner"]', function () {
-    				this.echo("I've waited for resolve types loading spinner to appear.");
-    			},125000);
-    		});
-    	},25000);
-    });
-    
-    casper.then(function () {
-		var experiments = casper.evaluate(function() {return window.Project.getExperiments().length;});
-		test.assertEquals(experiments, 2, "Initial amount of experiments for C302 checked");
-	});
-    
-    casper.then(function () {
-		var evaluate = casper.evaluate(function() {return c302.getChildren().length;});
-		test.assertEquals(evaluate, 299, "C302 Children count checked");
-	});
-    
-    casper.then(function () {
-		var evaluate = casper.evaluate(function() {return c302!=null;});
-		test.assertEquals(evaluate,true, "Top level instance present");
-	});
-    
-    casper.page.onCallback = function(){
-    	casper.echo("-------Testing Resolved Connections--------");
-
-    	test.assertEval(function() {
-    		return c302.ADAL[0].getConnections().length=== 31;
-    	},"ADAL connections check after resolveAllImportTypes() call.");
-
-    	test.assertEval(function() {
-    		return c302.AVAL[0].getConnections().length === 170;
-    	},"AVAL connections check after resolveAllImportTypes() call.");
-
-    	test.assertEval(function() {
-    		return c302.PVDR[0].getConnections().length===7;
-    	},"PVDRD connections check after resolveAllImportTypes() call.");
-    };
-
-    casper.then(function () {
-    	casper.echo("-------Executing command Model.neuroml.resolveAllImportTypes()--------");
-    	casper.evaluate(function() {Model.neuroml.resolveAllImportTypes(window.callPhantom);});
-    });
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Model.getVariables() != undefined && window.Model.getVariables().length == 2 &&
-            window.Model.getVariables()[0].getId() == 'c302' && window.Model.getVariables()[1].getId() == 'time';
-		},"2 top Variables as expected for C302");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Model.getLibraries() != undefined && window.Model.getLibraries().length == 2;
-		},"2 Libraries as expected for C302");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Instances != undefined && window.Instances.length == 2 && window.Instances[0].getId() == 'c302';
-		},"1 top level instance as expected for C302");
-	});
-
-    casper.then(function(){
-        resetCameraTest(test, [49.25,-0.8000001907348633,733.3303486467378]);
-    });
-
-    casper.then(function(){
-        removeAllPlots();
-    });
-
-    casper.then(function(){
-        casper.echo("-------Testing Camera Controls--------");
-        testCameraControls(test, [49.25,-0.8000001907348633,733.3303486467378]);
-    });
-    casper.then(function () {
-        test3DMeshColor(test,defaultColor,"c302.ADAL[0]");
-        casper.echo("Opening controls panel");
-        buttonClick("#controlPanelBtn");
-    });
-
-    casper.then(function(){
-        testInitialControlPanelValues(test,10);
-    });
-
-    casper.then(function () {
-        buttonClick("#stateVariablesFilterBtn");
-    });
-
-    casper.then(function(){
-        this.waitUntilVisible('button[id="c302_ADAL_0__v_plot_ctrlPanel_btn"]', function () {
-            buttonClick("#c302_ADAL_0__v_plot_ctrlPanel_btn");
-        });
-    });
-
-    casper.then(function(){
-        this.waitUntilVisible('div[id="Plot1"]', function () {
-            this.echo("I've waited for Plot1 to come up");
-            buttonClick("#anyProjectFilterBtn");
-            this.wait(500,function(){
-                var rows = casper.evaluate(function() {
-                    var rows = $(".standard-row").length;
-                    return rows;
-                });
-                test.assertEquals(rows, 10, "Correct amount of rows for Global filter");
-                casper.evaluate(function() {
-                    $("#controlpanel").hide();
-                });	
-                casper.echo("-------Testing Spotlight--------");
-                testSpotlight(test,  "c302.ADAL[0].v",'div[id="Plot2"]',true,false);
-            });
-        });
-    });
-
-    casper.then(function(){
-        casper.echo("-------Testing Spotlight--------");
-        testSpotlight(test,  "c302.ADAL[0].v",'div[id="Plot2"]',true,false);
-    });
-
-    casper.then(function(){
-        closeSpotlight(); //close spotlight before continuing
-        casper.echo("-------Testing Canvas Widget and Camera Controls for both canvas--------");
-        casper.evaluate(function(){
-            GEPPETTO.ComponentFactory.addWidget('CANVAS', {name: '3D Canvas',}, function () {this.setName('Widget Canvas');this.setPosition();this.display([c302])});
-            Plot1.setPosition(0,300);
-        });
-
-        testCameraControlsWithCanvasWidget(test,[49.25,-0.8000001907348633,733.3303486467378]);
-    });
-
-    casper.then(function(){
-        var initialColorFunctions = casper.evaluate(function(){
-            return GEPPETTO.SceneController.getColorFunctionInstances().length;
-        });
-        casper.echo("-------Testing Color Function--------");
-        //add color Function
-        casper.evaluate(function(){
-            GEPPETTO.SceneController.addColorFunction(GEPPETTO.ModelFactory.instances.getInstance(GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v'),false), window.voltage_color);
-            Project.getActiveExperiment().play({step:10});
-        });
-        var colorFunctionInstances = casper.evaluate(function(){
-            return GEPPETTO.SceneController.getColorFunctionInstances().length;
-        });
-        test.assertNotEquals(initialColorFunctions,colorFunctionInstances, "More than one color function instance found");
-        //		//test color function
-        //		casper.wait(2000, function(){
-        //			test3DMeshColorNotEquals(test,defaultColor,"c302.PVDR[0]");
-        //		});
-        casper.echo("Done Playing, now exiting");
-    });
-}
-
-function ca1Test(test){
-    casper.then(function(){launchTest(test,"CA1",45000);});
-    casper.echo("------------STARTING CA1 TEST--------------");
-
-    casper.then(function () {
-        this.echo("Opening controls panel");
-        buttonClick("#controlPanelBtn");
-        casper.wait(10000, function(){});
-    });
-
-    casper.then(function(){
-        testInitialControlPanelValues(test,3);
-    });
-
-    casper.then(function(){
-        this.evaluate(function(){
-            $("#anyProjectFilterBtn").click();
-        });
-    });
-
-    casper.then(function(){
-        casper.evaluate(function() {
-            $("#controlpanel").hide();
-        });	
-        casper.echo("-------Testing Spotlight--------");
-        testSpotlight(test,  "ca1.CA1_CG[0].Seg0_apical_dendrite_22_1158.v",'',false,false);
-    });
-
-    casper.then(function(){
-        closeSpotlight(); //close spotlight before continuing
-    });
-}
-
-function testPVDRNeuronProject(test){
-	casper.then(function(){launchTest(test,"PVDR cell NEURON",200000);});
-	casper.echo("------------STARTING PVDR Neuron TEST--------------");
-	casper.then(function () {
-		var experiments = casper.evaluate(function() {return window.Project.getExperiments().length;});
-		test.assertEquals(experiments, 1, "Initial amount of experiments for PVDR checked");
-	});
-    
-    casper.then(function () {
-		var evaluate = casper.evaluate(function() {return window.Project.getActiveExperiment().getId();});
-		test.assertEquals(evaluate, 1, "PVDR Project.getActiveExperiment() checked");
-	});
-    
-    casper.then(function () {
-		var evaluate = casper.evaluate(function() {return pvdr!=null;});
-		test.assertEquals(evaluate,true, "Top level PVDR instance present");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return pvdr.getConnections().length===0;
-		},"Connections checked for PVDR model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return pvdr.getVisualGroups().length===1;
-		},"Test number of VisualGroups for PVDR model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Model.getVariables() != undefined && window.Model.getVariables().length == 2 &&
-            window.Model.getVariables()[0].getId() == 'pvdr' && window.Model.getVariables()[1].getId() == 'time';
-		},"2 top Variables as expected for PVDR model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Model.getLibraries() != undefined && window.Model.getLibraries().length == 2;
-		},"2 Libraries as expected for PVDR model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Instances != undefined && window.Instances.length == 2 && window.Instances[0].getId() == 'pvdr';
-		},"2 top level instance as expected for PVDR model");
-	});
-}
-
-function testPMuscleCellProject(test){
-	casper.then(function(){launchTest(test,"PMuscle cell NEURON",200000);});
-	casper.echo("------------STARTING PMuscle Model TEST--------------");
-	casper.waitForSelector('div[id="Popup1"]', function() {
-        this.echo("I've waited for Popup1 to load.");
-    }, null, 30000);
-	
-	casper.then(function () {
-		var experiments = casper.evaluate(function() {return window.Project.getExperiments().length;});
-		test.assertEquals(experiments, 1, "Initial amount of experiments for PVDR checked");
-	});
-    
-    casper.then(function () {
-		var evaluate = casper.evaluate(function() {return window.Project.getActiveExperiment().getId();});
-		test.assertEquals(evaluate, 1, "PVDR Project.getActiveExperiment() checked");
-	});
-    
-    casper.then(function () {
-		var evaluate = casper.evaluate(function() {return net1!=null;});
-		test.assertEquals(evaluate,true, "Top level net1 instance present for PMuscle Model");
-	});
-    
-    casper.then(function () {
-		var evaluate = casper.evaluate(function() {return net1.getChildren().length;});
-		test.assertEquals(evaluate,2, "Children checked for PMuscle Model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return net1.getConnections().length===0;
-		},"Connections checked for PMuscle Model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return !net1.neuron[0].getVisualType().hasCapability('VisualGroupCapability');
-		},"Test No visual groups for PMuscle Model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return net1.neuron[0].getVisualType().hasCapability('VisualCapability');
-		},"Visual capability on neuron for PMuscle Model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return net1.muscle[0].getVisualType().hasCapability('VisualCapability');
-		},"Visual capability on muscle for PMuscle Model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Model.getVariables() != undefined && window.Model.getVariables().length == 2 &&
-            window.Model.getVariables()[0].getId() == 'net1' && window.Model.getVariables()[1].getId() == 'time';
-		},"2 top Variables as expected for PMuscle Model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Model.getLibraries() != undefined && window.Model.getLibraries().length == 2;
-		},"2 Libraries as expected for PMuscle Model");
-	});
-    
-    casper.then(function () {
-		test.assertEval(function() {
-			return window.Instances != undefined && window.Instances.length == 2 && window.Instances[0].getId() == 'net1';
-		},"2 top level instance as expected for for PMuscle Model");
-	});
-}
-
-function testC302Connectome(test){
-	casper.then(function(){launchTest(test,"C302 Connectome",200000);});
-    casper.echo("------------STARTING C302 Connectome TEST--------------");
-    casper.waitForSelector('div[id="Popup1"]', function() {
-        this.echo("I've waited for Popup1 to load.");
-    }, null, 150000);
-}
-
-
-function testCylindersProject(test){
-	casper.then(function(){launchTest(test,"Cylinders",200000);});
-	casper.echo("------------STARTING Cylinder Orientation TEST--------------");
-
-    casper.then(function () {
-
-        test.assertEval(function() {
-            var reference = {"Example2.Pop_OneSeg[0]":[0, Math.PI/2, 0, "XYZ"],
-                            "Example2.Pop_OneSeg[1]":[0, Math.PI/2, 0, "XYZ"],
-                            "Example2.Pop_TwoSeg[0]":[0, 0, 0, "XYZ"]};
-            var results = [];
-            for (var path in reference) {
-                var rotation = Canvas1.engine.meshes[path].rotation.toArray();
-                var expected = reference[path];
-                for (var i=0; i<rotation.length; ++i)
-                    results.push(rotation[i] === expected[i]);
-            }
-            for (var i=0; i<rotation.length; ++i)
-                results.push(rotation[i] === expected[i]);
-	    return results.every(function(x){return x;});
-	},"Rotation checked for all segments");
-    });
-}
diff --git a/tests/casperjs/PersistenceTests.js b/tests/casperjs/PersistenceTests.js
deleted file mode 100644
index acae6e2..0000000
--- a/tests/casperjs/PersistenceTests.js
+++ /dev/null
@@ -1,175 +0,0 @@
-var urlBase = casper.cli.get('host');
-if(urlBase==null || urlBase==undefined){
-	urlBase = "http://127.0.0.1:8080/";
-}
-var PROJECT_URL_SUFFIX = "?load_project_from_url=https://raw.githubusercontent.com/openworm/org.geppetto.samples/development/UsedInUnitTests/SingleComponentHH/GEPPETTO.json";
-var PROJECT_URL_SUFFIX_2 = "?load_project_from_url=https://raw.githubusercontent.com/openworm/org.geppetto.samples/development/UsedInUnitTests/pharyngeal/project.json";
-var PROJECT_URL_SUFFIX_3 = "?load_project_from_url=https://raw.githubusercontent.com/openworm/org.geppetto.samples/development/UsedInUnitTests/balanced/project.json";
-var PROJECT_URL_SUFFIX_4 = "?load_project_from_id=1";
-var projectID;
-
-var defaultLongWaitingTime = 295000;
-
-casper.test.begin('Geppetto basic tests', function suite(test) {
-    casper.options.viewportSize = {
-        width: 1340,
-        height: 768
-    };
-
-    // add for debug info
-    //casper.options.verbose = true;
-    //casper.options.logLevel = "debug";
-
-    // show unhandled js errors
-    casper.on("page.error", function(msg, trace) {
-        this.echo("Error: " + msg, "ERROR");
-    });
-
-    // show page level errors
-    casper.on('resource.received', function (resource) {
-        var status = resource.status;
-        if (status >= 400) {
-            this.echo('URL: ' + resource.url + ' Status: ' + resource.status);
-            this.echo('URL: ' + resource.url + ' Body: '  + resource.status);
-        }
-    });
-
-    casper.start(urlBase+"org.geppetto.frontend", function () {
-    	this.echo("Starting geppetto at host "+ urlBase);
-        this.waitForSelector('div#logo', function () {
-            this.echo("I waited for the logo to load.");
-            test.assertTitle("geppetto's home", "geppetto's homepage title is the one expected");
-            test.assertExists('div#logo', "logo is found");
-        }, null, defaultLongWaitingTime);
-    });
-
-    casper.then(function () {
-    	//TODO: log back in as other users. Check more things
-        //TODO: exercise the run loop, check the changing experiment status, try to make experiment fail
-        casper.echo("Waiting to logout");
-        casper.thenOpen(urlBase+"org.geppetto.frontend/logout", function () {
-        	this.echo("I've waited for user to logout.");
-        });
-    });
-    
-    casper.then(function () {
-        casper.thenOpen(urlBase+"org.geppetto.frontend/login?username=guest1&password=guest", function () {
-        	this.echo("Starting geppetto at host login "+ urlBase);
-            /*this.waitForSelector('div#page', function() {
-             this.echo("I've waited for the splash screen to come up.");
-             test.assertUrlMatch(/splash$/, 'Virgo Splash Screen comes up indicating successful login');
-             }, null, 30000);*/
-        });
-    });
-    
-    casper.then(function () {
-        casper.thenOpen(urlBase+"org.geppetto.frontend", function () {
-            this.waitForSelector('div[project-id="2"]', function () {
-                this.echo("I've waited for the projects to load.");
-                test.assertExists('div#logo', "logo is found");
-                test.assertExists('div[project-id="2"]', "Projects from persistence bundle are present")
-                test.assertSelectorHasText('div.user', 'Guest user', "Guest user is logged in");
-            }, null, 100000);
-            
-            this.waitForSelector('div[project-id="1"]', function () {
-                this.echo("I've waited for the projects to load.");
-                test.assertExists('div#logo', "logo is found");
-                test.assertExists('div[project-id="1"]', "Projects from persistence bundle are present")
-                test.assertSelectorHasText('div.user', 'Guest user', "Guest user is logged in");
-            }, null, 100000);
-        });
-    });
-    casper.then(function () {
-        testProject(test, urlBase+"org.geppetto.frontend/geppetto" + PROJECT_URL_SUFFIX, true,
-            false, 'hhcell.hhpop[0].v', 'Model.neuroml.pulseGen1.delay', true,"hhcell");
-    });
-    
-    casper.then(function () {
-    	projectID = this.evaluate(function() {
-           return Project.getId();
-        });
-    	this.echo("Project id to delete : "+projectID);
-    });
-    
-    casper.then(function () {
-        reloadProjectTest(test, urlBase+"org.geppetto.frontend/geppetto?load_project_from_id="+projectID,1);
-    });
-    
-    casper.then(function () {
-        deleteProject(test, urlBase+"org.geppetto.frontend",projectID);
-    });
- 
-    casper.then(function () {
-        testProject(test, urlBase+"org.geppetto.frontend/geppetto" + PROJECT_URL_SUFFIX_2, false,
-            false, 'c302_A_Pharyngeal.M1[0].v', 'Model.neuroml.generic_neuron_iaf_cell.C', false,"c302_A_Pharyngeal");
-    });
-    
-    casper.then(function () {
-    	projectID = this.evaluate(function() {
-           return Project.getId();
-        });
-    	this.echo("Project id to delete : "+projectID);
-    });
-    
-    casper.then(function () {
-        reloadProjectTest(test, urlBase+"org.geppetto.frontend/geppetto?load_project_from_id="+projectID,1);
-    });
-    
-    casper.then(function () {
-        deleteProject(test, urlBase+"org.geppetto.frontend",projectID);
-    });
-
-    casper.then(function () {
-        testProject(test, urlBase+"org.geppetto.frontend/geppetto" + PROJECT_URL_SUFFIX_3, false,
-            false, '', '', false,"Balanced_240cells_36926conns");
-    });
-    
-    casper.then(function () {
-    	projectID = this.evaluate(function() {
-           return Project.getId();
-        });
-    	this.echo("Project id to delete : "+projectID);
-    });
-    
-    casper.then(function () {
-        reloadProjectTest(test, urlBase+"org.geppetto.frontend/geppetto?load_project_from_id="+projectID,1);
-    });
-   
-    casper.then(function () {
-        deleteProject(test, urlBase+"org.geppetto.frontend",projectID);
-    });
-    
-    //tests persistence project features
-    casper.then(function () {
-        testPersistedProjectFeatures(test, urlBase+"org.geppetto.frontend/geppetto?load_project_from_id=1");
-    });
-    
-    casper.then(function () {
-    	//TODO: log back in as other users. Check more things
-        //TODO: exercise the run loop, check the changing experiment status, try to make experiment fail
-        casper.echo("Waiting to logout");
-        casper.thenOpen(urlBase+"org.geppetto.frontend/logout", function () {
-        	this.echo("I've waited for user to logout.");
-        });
-    });
-
-    casper.then(function () {
-    	casper.echo("Waiting for admin to login");
-        casper.thenOpen(urlBase+"org.geppetto.frontend/login?username=admin&password=admin", function () {
-        	this.echo("I've waited for the admin user to log");
-        });
-    });
-    
-    casper.then(function () {
-    	casper.echo("Waiting for admin panel");
-        casper.thenOpen(urlBase+"org.geppetto.frontend/admin", function () {
-            this.waitForSelector('div[class="griddle"]', function () {
-                this.echo("I've waited for the admin panel to load.");
-            }, null, 30000);
-        });
-    });  
-    
-    casper.run(function () {
-        test.done();
-    });
-});
\ No newline at end of file
diff --git a/tests/casperjs/PersistenceTestsLogic.js b/tests/casperjs/PersistenceTestsLogic.js
deleted file mode 100644
index e04b110..0000000
--- a/tests/casperjs/PersistenceTestsLogic.js
+++ /dev/null
@@ -1,881 +0,0 @@
-var amountOfRuns = 10;
-var dropBoxURL="https://www.dropbox.com/1/oauth2/authorize?locale=en_US&client_id=kbved8e6wnglk4h&response_type=code";
-var code;
-var permissions;
-
-var dropboxcode = casper.cli.get('dropboxcode');
-
-function deleteProject(test, url,id){
-	casper.thenOpen(url, function () {
-		this.echo("Loading an external model that is persisted at " + url);
-
-		casper.then(function () {
-			this.waitForSelector("div.project-preview", function () {
-				this.echo("Dashboard loaded")
-			}, null, 10000);
-		});
-
-		casper.then(function(){
-			casper.evaluate(function() {
-				$("#projects").scrollTop($("#projects")[0].scrollHeight+1000);
-			});
-		});
-
-		casper.then(function () {
-			this.waitForSelector('div[project-id=\"'+id+'\"]', function (id) {
-				this.echo("Waited for scrolldown projects to appear");
-				this.mouse.click('div[project-id=\"'+id+'\"]');
-			}, id, 4000);
-		});
-
-		casper.then(function () {
-			this.waitForSelector('a[title=\"Delete project\"]', function () {
-				this.echo("Waited for delete icon to delete project");
-				this.mouse.click("i.fa-trash-o");
-			}, null, 15000);
-
-			this.waitWhileVisible('a[title=\"Open project\"]', function () {
-				test.assertNotVisible('a[title=\"Open project\"]', "Correctly deleted project " + id);
-			}, null, 30000);
-		});
-	});
-}
-
-
-function reloadProjectTest(test, url, customHandlers,widgetCanvasObject){
-	casper.thenOpen(url, function () {
-		this.echo("Reloading persisted project at " + url);
-
-		casper.waitWhileVisible('div[id="loading-spinner"]', function () {
-			this.echo("I've waited for "+url+" project to load.");
-
-			casper.waitForSelector('div#Popup1', function() {
-				test.assertVisible('div#Popup1', "Popup1 is correctly open on reload");
-			}, null, defaultLongWaitingTime);
-
-			casper.waitForSelector('div#Connectivity1', function() {
-				test.assertVisible('div#Connectivity1', "Connectivity1 is correctly open on reload");
-			}, null, defaultLongWaitingTime);
-
-			casper.waitForSelector('div#Canvas2', function() {
-				test.assertVisible('div#Canvas2', "Canvas2 is correctly open on reload.");
-
-				if(casper.exists('#tutorialBtn')){
-					test.assertVisible('div#Tutorial1', "Tutorial1 is correctly open on reload");
-
-					var tutorialStep = casper.evaluate(function() {
-						return Tutorial1.state.currentStep;
-					});
-
-					test.assertEquals(tutorialStep, 2, "Tutorial1 step restored correctly");
-				}
-
-				var popUpCustomHandler = casper.evaluate(function() {
-					return Popup1.customHandlers;
-				});
-
-				test.assertEquals(popUpCustomHandler.length, customHandlers, "Popup1 custom handlers restored correctly");
-				test.assertEquals(popUpCustomHandler[0]["event"], "click", "Popup2 custom handlers event restored correctly");
-
-				var meshInCanvas2Exists = casper.evaluate(function() {
-					var mesh = $.isEmptyObject(Canvas1.engine.meshes);
-
-					return mesh;
-				});
-
-				test.assertEquals(meshInCanvas2Exists, false, "Canvas2 has mesh set correctly");
-			}, null, defaultLongWaitingTime);
-		},null,defaultLongWaitingTime);
-	});
-}
-
-function testProject(test, url, expect_error, persisted, spotlight_record_variable, spotlight_set_parameter, testConsole,widgetCanvasObject) {
-
-	casper.thenOpen(url, function () {
-		this.echo("Loading an external model that is not persisted at " + url);
-
-		casper.then(function () {
-			casper.waitWhileVisible('div[id="loading-spinner"]', function () {
-				this.echo("I've waited for "+url+" project to load.");
-				test.assertTitle("geppetto", "geppetto title is ok");
-				test.assertExists('div[id="sim-toolbar"]', "geppetto loads the initial simulation controls");
-				test.assertExists('div[id="controls"]', "geppetto loads the initial camera controls");
-				test.assertExists('div[id="foreground-toolbar"]', "geppetto loads the initial foreground controls");
-			},null,defaultLongWaitingTime);
-		});
-
-		casper.then(function () {
-			if (expect_error) {
-				casper.then(function () {
-					closeErrorMesage(test)
-				});
-			}
-
-			casper.then(function () {
-				doExperimentTableTest(test);
-				//FIXME Restore after fixing console test
-				if(testConsole){
-					doConsoleTest(test);
-				}
-			});
-
-			casper.then(function () {
-				this.waitForSelector('tr.experimentsTableColumn:nth-child(1)', function () {
-					test.assertExists('tr.experimentsTableColumn:nth-child(1)', "At least one experiment row exists");
-				}, null, 60000);
-			});
-
-			//do checks on the state of the project if it is not persisted
-			if (persisted == false) {
-				casper.then(function () {
-					// make sure experiment panel is open
-					// casper.clickLabel('Experiments', 'span');
-
-					//roll over the experiments row
-					this.mouse.move('tr.experimentsTableColumn:nth-child(1)');
-				});
-
-				casper.then(function () {
-					if(casper.exists('#tutorialBtn')){
-						casper.mouseEvent('click', 'button#tutorialBtn', "attempting to open tutorial");
-					}
-					casper.evaluate(function(widgetCanvasObject) {
-						var canvasObject = null;
-						if(widgetCanvasObject=="hhcell"){
-							canvasObject = hhcell;
-						}else if(widgetCanvasObject=="c302_A_Pharyngeal"){
-							canvasObject = c302_A_Pharyngeal;
-						}else if(widgetCanvasObject=="Balanced_240cells_36926conns"){
-							canvasObject = Balanced_240cells_36926conns;
-						}
-						G.addWidget(6);
-						GEPPETTO.ComponentFactory.addWidget('CANVAS', {name: '3D Canvas', id: "Canvas2"}, function () {this.setName('Widget Canvas');this.setPosition();this.display([canvasObject])});
-						G.addWidget(1).then(w=>{w.setMessage("Hhcell popup").addCustomNodeHandler(function(){},'click');});
-						$(".nextBtn").click();
-						$(".nextBtn").click();
-					},widgetCanvasObject);
-				});
-				casper.then(function () {
-					this.echo("Checking content of experiment row");
-					// test or wait for control panel stuff to be there
-					if(this.exists('span[class*="tabber"]')){
-						doExperimentsTableRowTests(test);
-					} else {
-						this.waitForSelector('span[class*="tabber"]', function(){
-							doExperimentsTableRowTests(test);
-						}, null, 10000);
-					}
-					//roll over the experiments row
-					this.mouse.move('tr.experimentsTableColumn:nth-child(1)');
-					//doPrePersistenceExperimentsTableButtonsCheck(test);
-				});
-				casper.then(function () {
-					if(spotlight_record_variable != ''){
-						doPrePersistenceSpotlightCheckRecordedVariables(test, spotlight_record_variable);
-					}
-				});
-				casper.then(function () {
-					if(spotlight_set_parameter != '') {
-						doPrePersistenceSpotlightCheckSetParameters(test, spotlight_set_parameter);
-					}
-				});
-
-				casper.then(function () {
-					casper.wait(5000, function () {});
-				});
-
-				casper.then(function () {
-					this.waitForSelector('button.btn.SaveButton', function () {
-						test.assertVisible('button.btn.SaveButton', "Persist button is present");
-					});
-
-					//Not really testing anything
-					/*//Good pattern for checking the absence of an attribute
-                    test.assertEvalEquals(function () {
-                        return require('../../utils').dump(this.getElementAttribute('button.SaveButton', 'disabled'));
-                    }, null, "The persist button is correctly active.");*/
-
-					//Click persist button. Check things again
-					this.mouseEvent('click', 'button.btn.SaveButton', "attempting to persist");
-
-				});
-
-				//TODO: make this work
-				//this.mouseEvent('click', 'button[data-reactid=".9.4"]', "Running an experiment");
-
-				//TODO: Test indicator light during experiment run
-				//TODO: test experiment buttons again to see if they are in the right configuration after simulation run
-
-				//TODO: Clone an experiment and see if it has the right state and changes the state correctly for the other experiment rows
-
-			}
-
-			casper.then(function () {
-				test.assertExists("button.btn.SaveButton[disabled]", "The persist button is now correctly inactive");
-			});
-			casper.then(function () {
-				this.echo("Waiting for persist star to stop spinning");
-				casper.waitWhileSelector('button.btn.SaveButton > i.fa-spin', function () {
-					//roll over the experiments row
-					this.echo("Persist star to stopped spinning");
-					//doPostPersistenceExperimentsTableButtonCheck(test);
-				}, null, defaultLongWaitingTime);
-			});
-			casper.then(function () {
-				doPostPersistenceSpotlightCheckSetParameters(test, spotlight_set_parameter);
-				//TODO: set a variable to record and a parameter to watch and make sure
-				//the experiment table row updates correctly.
-				//TODO: logout
-			});
-		});
-	});
-}
-
-function closeErrorMesage(test) {
-	casper.waitUntilVisible('div.modal-content', function () {
-		this.echo("I've waited for the popup message to load up");
-		test.assertVisible('h3.text-center', "Error message correctly pops up");
-		test.assertSelectorHasText('h3.text-center', 'Message', "Error message correctly pops up with the message header");
-		this.mouseEvent('click', 'button.btn', "closing error message");
-		this.waitWhileVisible('h3.text-center', function () {
-			test.assertNotVisible('h3.text-center', "Correctly closed error message");
-		}, null, 30000);
-	}, null, 20000);
-}
-
-function doExperimentTableTest(test) {
-	casper.then(function () {
-		test.assertExists('span[class*="tabber"]', "Experiments tab anchor is present");
-
-		test.assertSelectorHasText('span[class*="tabber"]', 'Experiments');
-
-		test.assertExists('div#experimentsOutput', "Experiments panel is present");
-
-		test.assertNotVisible('div#experimentsOutput', "The experiment panel is correctly closed.");
-	});
-
-	casper.then(function () {
-		this.echo("Opening experiment console");
-		casper.clickLabel('Experiments', 'span');
-
-		this.waitUntilVisible('div#experimentsOutput', function () {
-			test.assertVisible('div#experimentsOutput', "The experiment panel is correctly open.");
-			this.echo("Closing experiment console");
-			casper.clickLabel('Experiments', 'span');
-		}, null, 15000);
-	});
-}
-
-function doExperimentsTableRowTests(test){
-	casper.echo("Opening experiments panel");
-	casper.clickLabel('Experiments', 'span');
-
-	// open first experiment row
-	casper.echo("Opening first experiment row");
-	casper.evaluate(function() {
-		$('tr.experimentsTableColumn:nth-child(1)').click();
-	});
-
-	casper.echo("Waiting for row contents to appear");
-	// make sure panel is open
-	casper.evaluate(function() {
-		if(!$('#experimentsOutput').is(':visible')){
-			//$('#experimentsButton').click();
-			//this.echo("Closing experiment console");
-			casper.clickLabel('Experiments', 'span');
-		}
-	});
-	casper.waitUntilVisible('td[name=variables]', function(){
-		test.assertVisible('td[name=variables]', "Variables column content exists");
-		test.assertVisible('td[name=parameters]', "Parameters column content exists");
-	}, null, 10000);
-}
-
-function doConsoleTest(test) {
-
-	casper.then(function () {
-		test.assertExists('span[class*="tabber"]', "Tabber anchor is present");
-
-		test.assertSelectorHasText('span[class*="tabber"]', 'Console');
-
-		test.assertExists('div[class*="consoleContainer"]', "Console panel is present");
-
-		test.assertNotVisible('div[class*="consoleContainer"]', "The console panel is correctly closed.");
-	});
-
-	casper.then(function () {
-		//this.click('a[href="#console"]', "Opening command console");
-		casper.clickLabel('Console', 'span');
-
-		this.waitUntilVisible('div.consoleContainer', function () {
-			test.assertVisible('div.consoleContainer', "The console panel is correctly open.");
-			//type into console command (getTimeSeries()) half finished for state variable
-			casper.evaluate(function() {
-				$('textarea#commandInputArea').val('hhcell.hhpop[0].v.getTi');
-				$('textarea#commandInputArea').trigger('keydown');
-			});
-			casper.wait(200, function () {
-				var nameCount = casper.evaluate(function () {
-					//retrieve console input via jquery
-					var output = $('textarea#commandInputArea').val();
-					return output;
-				});
-				casper.echo(nameCount);
-				//console should return command fully finished after autocomplete kicks in
-				test.assertEquals(nameCount, "hhcell.hhpop[0].v.getTimeSeries()", "Autocomplete for state variable present.");
-
-				casper.sendKeys('textarea#commandInputArea', "", {reset: true});
-			});
-		}, null, 5000);
-	});
-
-	casper.then(function () {
-		//type into console command (isSelected()) half finished for object, if
-		//updated capability worked then isSelected() method from object VisualCapability
-		//will be part of object hhcell
-		casper.evaluate(function() {
-			$('textarea#commandInputArea').val('hhcell.isS');
-			$('textarea#commandInputArea').trigger('keydown');
-		});
-		casper.wait(200, function () {
-			var nameCount = casper.evaluate(function () {
-				//retrieve console input via jquery
-				var output = $('textarea#commandInputArea').val();
-				return output;
-			});
-			casper.echo(nameCount);
-			//console should return command fully finished after autocomplete kicks in
-			test.assertEquals(nameCount, "hhcell.isSelected()", "Autocomplete for updated capability present.");
-
-			casper.sendKeys('textarea#commandInputArea', "", {reset: true});
-		});
-	});
-}
-
-function doPrePersistenceExperimentsTableButtonsCheck(test) {
-	//Check presence of experiment console buttons before persistence
-	casper.waitForSelector('a.activeIcon', function () {
-		test.assertNotVisible('a.activeIcon', "active button exists and is correctly not enabled");
-	}, null, 10000);
-
-	casper.waitForSelector('a.deleteIcon', function () {
-		test.assertDoesntExist('a.enabled.deleteIcon', "delete button exists and is correctly not enabled");
-	}, null, 10000);
-
-	casper.waitForSelector('a.downloadResultsIcon', function () {
-		test.assertNotVisible('a.downloadResultsIcon', "download results button exists and is correctly not enabled");
-	}, null, 10000);
-
-	casper.waitForSelector('a.downloadModelsIcon', function () {
-		test.assertVisible('a.downloadModelsIcon', "download models button exists and is correctly enabled");
-	}, null, 10000);
-
-	casper.waitForSelector('a.cloneIcon', function () {
-		test.assertDoesntExist('a.enabled.cloneIcon', "clone button exists and is correctly not enabled");
-	}, null, 10000);
-}
-
-function doPostPersistenceExperimentsTableButtonCheck(test) {
-	casper.waitForSelector('button.btn.SaveButton[disabled]', function () {
-		casper.wait(5000, function () {});
-		
-		test.assertSelectorHasText('span[class*="tabber"]', 'Console', 'Experiments button exists');
-
-		casper.mouse.move('tr.experimentsTableColumn:nth-child(1)');
-		//Check presence of experiment console buttons AFTER persistence
-		casper.waitForSelector('a.activeIcon', function () {
-			test.assertNotVisible('a.activeIcon', "active button exists and is correctly not enabled");
-		}, null, 5000);
-
-		casper.waitForSelector('a.downloadResultsIcon', function () {
-			test.assertNotVisible('a.downloadResultsIcon', "download results button exists and is correctly not enabled");
-		}, null, 5000);
-
-		casper.waitUntilVisible('a.downloadModelsIcon', function () {
-			test.assertVisible('a.downloadModelsIcon', "download models button exists and is correctly enabled");
-		}, null, 5000);
-
-		casper.waitUntilVisible('a.cloneIcon', function () {
-			test.assertVisible('a.cloneIcon', "clone button exists and is correctly enabled");
-		}, null, 5000);
-
-		casper.waitUntilVisible('a.deleteIcon', function () {
-			test.assertVisible('a.deleteIcon', "delete button exists and is correctly enabled");
-		}, null, 5000);
-	});
-}
-
-
-function doSpotlightCheck(test, spotlight_search, persisted, check_recorded_or_set_parameters) {
-	// do checks only if spotlight search is specified
-	if(spotlight_search!= '') {
-		test.assertExists('i.fa-search', "Spotlight button exists")
-		casper.mouseEvent('click', 'i.fa-search', "attempting to open spotlight");
-
-		casper.waitUntilVisible('div#spotlight', function () {
-			test.assertVisible('div#spotlight', "Spotlight opened");
-
-			//type in the spotlight
-			casper.sendKeys('input#typeahead', spotlight_search, {keepFocus: true});
-			//press enter
-			casper.sendKeys('input#typeahead', casper.page.event.key.Return, {keepFocus: true});
-
-			casper.waitUntilVisible('div#spotlight', function () {
-
-				casper.then(function () {
-
-					if (persisted) {
-						if (check_recorded_or_set_parameters) {
-							this.echo("Waiting to see if the recorded variables button becomes visible");
-							casper.waitUntilVisible('button#watch', function () {
-								test.assertVisible('button#watch', "Record variables icon correctly visible");
-								this.echo("Recorded variables button became visible correctly");
-							}, null, 8000);
-						} else {
-							//TESTS THAT THE PARAMETER IS SETTABLE
-							test.assertVisible('input.spotlight-input', "Parameter input field correctly visible");
-						}
-					} else {
-						if (check_recorded_or_set_parameters) {
-							//TESTS THAT THE VARIABLE IS NOT RECORDABLE
-							test.assertNotVisible('button#watch', "Record variables icon correctly not visible");
-						} else {
-							//TESTS THAT THE PARAMETER IS NOT SETTABLE
-							test.assertNotVisible('input.spotlight-input', "Parameter input field correctly not visible");
-						}
-					}
-				});
-
-				casper.then(function () {
-					this.mouse.move('tr.experimentsTableColumn:nth-child(1)');
-					casper.mouseEvent('click', 'div#spotlight', "attempting to close spotlight");
-					this.echo("Clicking to close spotlight");
-					casper.sendKeys('input#typeahead', casper.page.event.key.Escape, {keepFocus: true});
-					this.echo("Hitting escape to close spotlight");
-
-					this.waitWhileVisible('div#spotlight', function () {
-						test.assertNotVisible('div#spotlight', "Spotlight closed correctly");
-					}, null, 10000);
-				})
-			});
-
-		});
-	}
-}
-
-function doPrePersistenceSpotlightCheckRecordedVariables(test, spotlight_search) {
-	doSpotlightCheck(test, spotlight_search, false, true);
-}
-
-function doPrePersistenceSpotlightCheckSetParameters(test, spotlight_search) {
-	doSpotlightCheck(test, spotlight_search, false, false);
-}
-
-function doPostPersistenceSpotlightCheckRecordedVariables(test, spotlight_search) {
-	doSpotlightCheck(test, spotlight_search, true, true);
-}
-
-function doPostPersistenceSpotlightCheckSetParameters(test, spotlight_search) {
-	doSpotlightCheck(test, spotlight_search, true, false);
-}
-
-function testPersistedProjectFeatures(test,url){
-	casper.thenOpen(url, function () {
-		this.echo("Loading a model that is persisted at " + url);
-
-		casper.then(function () {
-			casper.waitWhileVisible('div[id="loading-spinner"]', function () {
-				this.echo("I've waited for "+url+" project to load.");
-				test.assertTitle("geppetto", "geppetto title is ok");
-				test.assertExists('div[id="sim-toolbar"]', "geppetto loads the initial simulation controls");
-				test.assertExists('div[id="controls"]', "geppetto loads the initial camera controls");
-				test.assertExists('div[id="foreground-toolbar"]', "geppetto loads the initial foreground controls");
-			},null,defaultLongWaitingTime);
-		});
-
-		casper.then(function () {
-			casper.then(function () {
-				var experiments = casper.evaluate(function() {return window.Project.getExperiments().length;});
-				test.assertEquals(experiments, 3, "Initial amount of experiments for hhcell checked");
-			});
-
-			casper.then(function () {
-				test.assertEval(function() {
-					return window.Project.getExperiments().length > 1;
-				},"Loaded project from persistence");
-			});
-
-			casper.then(function(){
-				casper.evaluate(function() {
-					window.Project.getExperiments()[1].setActive();
-				});
-			});
-
-			casper.then(function () {
-				casper.waitWhileVisible('div[id="loading-spinner"]', function () {
-					this.echo("I've waited for experment to be actve.");
-					test.assertEval(function() {
-						return window.Project.getActiveExperiment().getId()===2;
-					},"New Active experiment id of loaded project checked");
-				},null,10000);
-			});
-
-			casper.then(function () {
-				var evaluate = casper.evaluate(function() {return hhcell!=null;});
-				test.assertEquals(evaluate,true, "Top level instance present");
-			});
-
-			casper.then(function () {
-				test.assertEval(function() {
-					return window.Model.getVariables() != undefined && window.Model.getVariables().length == 2 &&
-					window.Model.getVariables()[0].getId() == 'hhcell' && window.Model.getVariables()[1].getId() == 'time';
-				},"2 top Variables as expected for hhcell");
-			});
-
-			casper.then(function () {
-				test.assertEval(function() {
-					return window.Model.getLibraries() != undefined && window.Model.getLibraries().length == 2;
-				},"2 Libraries as expected for hhcell");
-			});
-
-			casper.then(function () {
-				test.assertEval(function() {
-					return window.Instances != undefined && window.Instances.length == 2 && window.Instances[0].getId() == 'hhcell';
-				},"1 top level instance as expected for hhcell");
-			});
-
-		});
-
-		casper.then(function () {
-			testUpload2DropBoxFeature(test,url);
-		});
-
-		casper.then(function () {
-			testDownloadExperimentModel(test);
-		});
-
-		casper.then(function () {
-			testDownloadExperimentResults(test);
-		});
-
-		for(var testRun=0;testRun<amountOfRuns;testRun++){
-			casper.then(function () {
-				testCreateExperiment(test);
-			});
-
-			casper.then(function () {
-				experimentConsoleToggleTests(test,4);
-			});
-
-			casper.then(function () {
-				testDeleteExperiment(test);
-			});
-
-			casper.then(function () {
-				experimentConsoleToggleTests(test,3);
-			});
-
-			casper.then(function () {
-				testCloneExperiment(test);
-			});
-
-			casper.then(function () {
-				experimentConsoleToggleTests(test,4);
-			});
-
-			casper.then(function () {
-				testDeleteExperiment(test);
-			});
-
-			casper.then(function () {
-				experimentConsoleToggleTests(test,3);
-			});
-
-			casper.then(function () {
-				testCreateExperiment(test);
-			});
-
-			casper.then(function () {
-				experimentConsoleToggleTests(test,4);
-			});
-
-			casper.then(function () {
-				testSaveExperimentProperties(test);
-			});
-
-			casper.then(function () {
-				testSaveProjectProperties(test);
-			});
-
-			casper.then(function () {
-				testDeleteExperiment(test);
-			});
-
-			casper.then(function () {
-				experimentConsoleToggleTests(test,3);
-			});
-		}
-	});
-}
-
-function testUpload2DropBoxFeature(test,projectURL){
-	casper.then(function () {
-		permissions = test.assertEval(function() {
-			var login = GEPPETTO.UserController.isLoggedIn();
-			var writePermission = GEPPETTO.UserController.hasPermission(GEPPETTO.Resources.WRITE_PROJECT);
-			var projectPersisted = window.Project.persisted;
-			return writePermission && projectPersisted && login;
-		},"No Permissions restrictions for uploading!");
-	});
-
-	
-	casper.then(function () {
-		casper.clickLabel('Console', 'span');
-	});
-
-	casper.then(function(){
-		this.waitUntilVisible('div[id="undefined_console"]', function () {
-			casper.then(function () {
-				casper.evaluate(function() {
-					G.debug(true);
-				});
-			});
-		});
-	});
-	
-	if(dropboxcode!=null && dropboxcode !=undefined && dropboxcode!=""){
-
-		casper.then(function () {
-			casper.evaluate(function(dropboxcode) {
-				G.linkDropBox(dropboxcode);
-			},dropboxcode);
-			this.echo("Copy drop box access code"+dropboxcode);
-		});
-
-		casper.then(function () {
-			casper.waitForText("Dropbox linked successfully", function() {
-				this.echo('Dropbox linked successfully using persisted project hhcell');
-			},10000);
-		});
-
-		casper.then(function () {
-			casper.evaluate(function(permissions) {
-				if(permissions){
-					window.Project.getActiveExperiment().uploadModel('hhcell');
-					window.Project.getActiveExperiment().uploadResults("hhcell", "GEPPETTO_RECORDING");
-				}
-			},permissions);
-			this.echo("");
-		});
-
-		casper.then(function () {
-			casper.waitForText("Results uploaded succesfully", function() {
-				this.echo('Results uploaded succesfully using persisted project hhcell');
-			},150000);
-
-			casper.waitForText("Model uploaded succesfully", function() {
-				this.echo('Model uploaded succesfully using persisted project hhcell');
-			},150000);
-		});
-	}
-}
-
-function testDownloadExperimentModel(test){
-	casper.then(function () {
-		casper.evaluate(function() {
-			var login = GEPPETTO.UserController.isLoggedIn();
-			var writePermission = GEPPETTO.UserController.hasPermission(GEPPETTO.Resources.WRITE_PROJECT);
-			var projectPersisted = window.Project.persisted;
-			if(writePermission && projectPersisted && login){
-				window.Project.downloadModel('hhcell');
-			}
-		});
-	});
-
-	casper.then(function () {
-		casper.waitForText("Results downloaded succesfully", function() {
-			this.echo('Results downloaded succesfully using persisted project hhcell');
-		},150000);
-	});
-}
-
-function testDownloadExperimentResults(test){
-	casper.then(function () {
-		casper.evaluate(function() {
-			var login = GEPPETTO.UserController.isLoggedIn();
-			var writePermission = GEPPETTO.UserController.hasPermission(GEPPETTO.Resources.WRITE_PROJECT);
-			var projectPersisted = window.Project.persisted;
-			if(writePermission && projectPersisted && login){
-				window.Project.getActiveExperiment().downloadResults('hhcell', 'GEPPETTO_RECORDING');
-			}
-		});
-	});
-
-	casper.then(function () {
-		casper.waitForText("Results downloaded succesfully", function() {
-			this.echo('Results downloaded succesfully using persisted project hhcell');
-		},150000);
-	});
-}
-
-function testSaveProjectProperties(test){
-	casper.then(function () {
-		casper.evaluate(function() {
-			var properties = {"name": "New Project Name"};
-			window.Project.saveProjectProperties(properties);
-		});
-		this.echo("--------Save project using persisted project hhcell");
-	});
-
-	casper.then(function () {
-		casper.waitForText("Project saved succesfully", function() {
-			this.echo('Project saved succesfullyusing persisted project hhcell');
-		},150000);
-	});
-}
-
-function testSaveExperimentProperties(test){
-	casper.then(function () {
-		casper.evaluate(function() {
-			var properties = {"name": "New Name for Experiment",
-					"conversionServiceId" : "testService",
-					"simulatorId" : "testSimulator",
-					"length" : "2",
-					"timeStep" : "3",
-					"aspectInstancePath" : "hhcell(net1)"};
-			window.Project.getExperiments()[(window.Project.getExperiments().length-1)].saveExperimentProperties(properties);
-		});
-		this.echo("--------Save experiment using persisted project hhcell");
-	});
-
-	casper.then(function () {
-		casper.waitForText("Experiment saved succesfully", function() {
-			this.echo('Experiment saved succesfully using persisted project hhcell');
-		},150000);
-	});
-}
-
-function testDeleteExperiment(test){
-	casper.then(function () {
-		casper.evaluate(function() {
-			window.Project.getExperiments()[(window.Project.getExperiments().length-1)].deleteExperiment();
-		});
-		this.echo("--------Deleting new experiment using persisted project hhcell");
-	});
-
-	casper.then(function () {
-		casper.waitForText("Experiment deleted succesfully", function() {
-			this.echo('Experiment deleted succesfully using persisted project hhcell');
-
-			casper.then(function () {
-				test.assertEval(function() {
-					return window.Project.getExperiments().length===3;
-				},"Experiment deleted checked using persisted project hhcell");
-			});
-
-			casper.then(function() {    
-				casper.evaluate(function() {
-					document.getElementById('infomodal-btn').click();
-				});
-			});
-		},150000);
-	});
-}
-
-function testCreateExperiment(test){
-	casper.then(function () {
-		casper.evaluate(function() {
-			window.Project.newExperiment();
-		});
-		this.echo("------Creating new experiment using persisted project hhcell");
-	});
-
-	casper.then(function () {
-		casper.waitForText("Experiment created succesfully", function() {
-			this.echo("Experiment created succesfully using persisted project hhcell");
-
-			casper.then(function () {
-				test.assertEval(function() {
-					return window.Project.getExperiments().length===4;
-				},"New experiment created checked using persisted project hhcell");
-			});
-		},150000);
-	});
-}
-
-function testCloneExperiment(test){
-	casper.then(function () {
-		casper.evaluate(function() {
-			window.Project.getExperiments()[0].clone();
-		});
-		this.echo("-----Cloning new experiment using persisted project hhcell");
-	});
-
-	casper.then(function () {
-		casper.waitForText("Experiment created succesfully", function() {
-			this.echo('Experiment cloned succesfully using persisted project hhcell');
-
-			casper.then(function () {
-				test.assertEval(function() {
-					return window.Project.getExperiments().length===4;
-				},"Experiment cloned checked using persisted project hhcell");
-
-				test.assertEval(function() {
-					return Project.getExperiments()[0].simulatorConfigurations["hhcell"].length ===
-						Project.getExperiments()[Project.getExperiments().length-1].simulatorConfigurations["hhcell"].length;
-				},"Clone Experiment - Simulator Configuration duration checked");
-
-				test.assertEval(function() {
-					return Project.getExperiments()[0].simulatorConfigurations["hhcell"].timeStep===
-						Project.getExperiments()[Project.getExperiments().length-1].simulatorConfigurations["hhcell"].timeStep;
-				},"Clone Experiment - Simulator Configuration time step checked");
-
-				test.assertEval(function() {
-					return Project.getExperiments()[0].simulatorConfigurations["hhcell"].simulatorId===
-						Project.getExperiments()[Project.getExperiments().length-1].simulatorConfigurations["hhcell"].simulatorId;
-				},"Clone Experiment - Simulator Configuration service id checked");
-			});
-		},150000);
-	});
-}
-
-function experimentConsoleToggleTests(test,rowLength){
-	casper.then(function () {
-		casper.then(function () {
-			this.wait(1500, function () {});
-		});
-
-		casper.then(function () {
-			this.echo("Opening experiment console");
-			casper.clickLabel('Experiments', 'span');
-
-			this.waitUntilVisible('div#experimentsOutput', function () {
-				test.assertVisible('div#experimentsOutput', "The experiment panel is correctly open.");
-			}, null, 15000);
-		});
-		casper.then(function () {
-			var length = casper.evaluate(function() {
-				return document.getElementsByClassName("nested-experiment-info").length;
-			});
-
-			test.assertEquals(length, rowLength,"Amount of experiment rows correct")
-		});
-
-		casper.then(function () {
-			casper.then(function () {
-				casper.clickLabel('Console', 'span');
-			});
-
-			casper.then(function(){
-				this.waitUntilVisible('div[id="undefined_console"]', function () {
-					casper.then(function () {
-						casper.evaluate(function() {
-							G.debug(true);
-							GEPPETTO.CommandController.clear();
-						});
-					});
-				});
-			});
-		});
-	});
-}
diff --git a/tests/casperjs/README.md b/tests/casperjs/README.md
deleted file mode 100644
index d32cdc0..0000000
--- a/tests/casperjs/README.md
+++ /dev/null
@@ -1,53 +0,0 @@
-## Prereqs
-
-* node.js
-* npm
-
-## Install with:
-
-`npm install -g phantomjs casperjs slimerjs`
-
-## Run with (in this folder):
-
-To test that Casper is properly installed:
-
-`casperjs test LiveTests.js --engine=slimerjs` 
-
-To run UIComponents Tests (Requires NOT having the persistence bundle):
-
-`casperjs test --includes=/utilities/TestsUtility.js UIComponentsTests.js --engine=slimerjs`
-
-To run Geppetto Model Tests (Requires NOT having the persistence bundle):
-
-`casperjs test --includes=/utilities/TestsUtility.js GeppettoModelTests.js --engine=slimerjs`
-
-To run Neuronal Model Projects Tests (Requires NOT having the persistence bundle):
-
-`casperjs test --includes=/utilities/TestsUtility.js,NeuronalTestsLogic.js NeuronalProjectsTests.js --engine=slimerjs`
-
-To run Core default projects Tests (Requires NOT having the persistence bundle) including Neuronal Projects:
-
-`casperjs test --includes=/utilities/TestsUtility.js,NeuronalTestsLogic.js DefaultProjectsTests.js --engine=slimerjs`
-
-To run Persistence Tests (Requires the persistence bundle and a running MySQL server):
-
-`casperjs test --includes=PersistenceTestsLogic.js PersistenceTests.js --engine=slimerjs`
-
-Tests are executed by default on port 8080. If you would like to execute tests on a different port you can change it [here](https://github.com/openworm/org.geppetto.frontend/blob/caspers-qunit/src/main/webapp/js/pages/tests/casperjs/PersistenceTests.js#L3).
-
-To test Gepptto's upload features you'll need to give Geppetto permission to upload to your Dropbox folder. To do this, first
-launch Geppetto in the browser and run command 'G.linkDropBox()', a new tab/window will open asking you to sign in to your drop box account and give Geppetto permission. Once you have given Geppetto permission you'll be presented with an access key code, you'll need to copy and past it as the value of 'dropboxcode' argument in the casper test run command.
-
-`casperjs test --includes=PersistenceTestsLogic.js PersistenceTests.js --dropboxcode=accessKey --engine=slimerjs`
-
-If you have an error similar to this one:
-`Gecko error: it seems /usr/bin/firefox is not compatible with SlimerJS.`
-It may be due to a new version of Firefox not supported by your current Slimer version. You have two options:
-- Update Slimerjs and check if it supports latest FireFox
-- Change application.ini maximum Firefox version parameter. [Reference](https://github.com/laurentj/slimerjs/issues/495#issuecomment-225008001)
-
-## documentation
-
-* [CasperJS Test API documentation](http://docs.casperjs.org/en/latest/modules/tester.html) - assert API
-* [CasperJS Core API documentation](http://docs.casperjs.org/en/latest/modules/casper.html) - actions like clicks.
-* [Additional command-line options for casperjs](https://docs.slimerjs.org/current/configuration.html#command-line-options) (these can go after `--engine=slimerjs`)
diff --git a/tests/casperjs/UIComponentsTests.js b/tests/casperjs/UIComponentsTests.js
deleted file mode 100644
index d40afed..0000000
--- a/tests/casperjs/UIComponentsTests.js
+++ /dev/null
@@ -1,506 +0,0 @@
-var collapsedWidgetHeight = 35;
-casper.test.begin('Geppetto basic UI Components/Widgets Tests', function suite(test) {
-	casper.options.viewportSize = {
-			width: 1340,
-			height: 768
-	};
-
-	casper.on("page.error", function(msg, trace) {
-		this.echo("Error: " + msg, "ERROR");
-	});
-
-	// show page level errors
-	casper.on('resource.received', function (resource) {
-		var status = resource.status;
-		if (status >= 400) {
-			this.echo('URL: ' + resource.url + ' Status: ' + resource.status);
-		}
-	});
-
-	casper.start(urlBase+"org.geppetto.frontend", function () {
-		this.echo(urlBase+baseFollowUp+hhcellProject);
-		this.waitForSelector('div[project-id="1"]', function () {
-			this.echo("I've waited for the projects to load.");
-			test.assertExists('div#logo', "logo is found");
-			test.assertExists('div[project-id="1"]', "Project width id 1 from core bundle are present");
-			test.assertExists('div[project-id="3"]', "Project width id 3 from core bundle are present");
-			test.assertExists('div[project-id="4"]', "Project width id 4 from core bundle are present");
-			test.assertExists('div[project-id="5"]', "Project width id 5 from core bundle are present");
-			test.assertExists('div[project-id="6"]', "Project width id 6 from core bundle are present");
-			test.assertExists('div[project-id="8"]', "Project width id 8 from core bundle are present");
-			test.assertExists('div[project-id="9"]', "Project width id 9 from core bundle are present");
-			test.assertExists('div[project-id="16"]', "Project width id 16 from core bundle are present");
-			test.assertExists('div[project-id="18"]', "Project width id 18 from core bundle are present");
-			test.assertExists('div[project-id="58"]', "Project width id 58 from core bundle are present");
-		}, null, 3000);
-	});
-
-	/**Tests Widgets, components and other UI elements using a new project with no scene loaded**/
-	casper.thenOpen(urlBase+baseFollowUp,function() {
-		casper.then(function(){launchTest(test,"Default Empty Project",5000);});
-		casper.then(function(){casper.wait(2000, function () {
-			//FIXME: Broken after tabbed drawer refactoring, on the to do list.
-			casper.then(function(){consoleTest(test);});
-			casper.then(function(){debugModeTest(test);});
-			casper.then(function(){helpWindowTest(test);});
-			casper.then(function(){popupWidgetTest(test);});
-			casper.then(function(){plotWidgetTest(test);});
-			casper.then(function(){treeVisualizerTest(test);});
-			casper.then(function(){variableVisualizerTest(test);});
-			casper.then(function(){unitsControllerTest(test);});
-		})});
-	});
-
-	casper.run(function() {
-		test.done();
-	});
-});
-
-/* Tests debug mode functionality
- */
-function debugModeTest(test){
-	//test debug mode is off by default
-	casper.then(function(){
-		var debugMode = casper.evaluate(function() {
-			return G.isDebugOn();
-		});
-		test.assertEquals(debugMode, false, "Debug mode correctly disabled.");
-	});
-
-	//test debug mode can be turn on
-	casper.then(function(){
-		var debugMode = casper.evaluate(function() {
-			G.debug(true);
-			return G.isDebugOn();
-		});
-		test.assertEquals(debugMode, true, "Debug mode correctly enabled.");
-	});
-
-	//tests that debug mode can be turn off
-	casper.then(function(){
-		var debugMode = casper.evaluate(function() {
-			G.debug(false);
-			return G.isDebugOn();
-		});
-		test.assertEquals(debugMode, false, "Debug mode correctly disabled.");
-	});
-}
-
-/* Tests help window
- */
-function helpWindowTest(test){
-	//open help window
-	casper.then(function () {
-		buttonClick("#genericHelpBtn");
-	});
-
-	casper.then(function(){
-		//wait for help modal to open and test elements are present
-		this.waitUntilVisible('div[id="help-modal"]', function () {
-			//tests help window has right amount of H4 headers
-			casper.then(function(){
-				var h4Elements = casper.evaluate(function() {
-					var h4Elements = $("#help-modal").find("h4").length;
-					return h4Elements;
-				});
-				test.assertEquals(h4Elements, 7, "Right amount of title headers for tutorial window");
-			});
-			//tests that help modal window has right amount of status circles
-			casper.then(function(){
-				var statusCirclesElements = casper.evaluate(function() {
-					var statusCirclesElements = $("#help-modal").find("div").find(".circle").length;
-					return statusCirclesElements;
-				});
-				test.assertEquals(statusCirclesElements, 10, "Right amount of status circles for tutorial window");
-			});
-		});
-	});
-
-	//tests help command doesn't return null
-	casper.then(function () {
-		var helpCommand = casper.evaluate(function() {
-			return G.help();
-		});
-		test.assertNotEquals(helpCommand, null, "G.help command not null.");
-	});
-
-	//tests help modal window can be closed
-	casper.then(function () {
-		casper.evaluate(function() {
-			$("#help-modal").find("button")[0].click();
-		});
-		casper.waitWhileVisible('div[id="help-modal"]', function () {
-			this.echo("I've waited for help window to go away.");
-		});
-	});
-}
-
-/* Tests console component
- */
-function consoleTest(test){
-	//open the console
-	casper.then(function () {
-		//buttonClick("#consoleButton");
-		casper.clickLabel('Console', 'span');
-	});
-
-	casper.then(function () {
-		test.assertVisible('div[class*="consoleContainer"]', "The console panel is correctly visible.");
-
-		buttonClick(".minIcons");
-		test.assertNotVisible('div[class*="consoleContainer"]', "The console panel is correctly hidden.");
-
-		casper.clickLabel('Console', 'span');
-		test.assertVisible('div[class*="consoleContainer"]', "The console panel is correctly visible.");
-
-		buttonClick(".maxIcons");
-		var tabberHeight = casper.evaluate(function () {
-			return $(".drawer,.react-draggable").height() > 250;
-		});
-		test.assertEquals(tabberHeight, true, "Console is maximized correctly");
-
-		buttonClick(".closeIcons");
-		test.assertNotVisible('div[class*="consoleContainer"]', "The console panel is correctly hidden.");
-
-		casper.clickLabel('Console', 'span');
-	});
-
-	casper.then(function(){
-		this.waitUntilVisible("#commandInputArea", function () {
-			//test console is empty upon opening
-			casper.then(function () {
-				var spanCount = casper.evaluate(function() {
-					return $("#Console1_console").find("span").length <=1;
-				});
-				test.assertEquals(spanCount, true, "Console output empty");
-			});
-
-			casper.then(function () {
-				casper.evaluate(function() {
-					G.debug(true);
-				});
-			});
-
-			//dummy UI interaction to create logs on console
-			casper.then(function () {
-				buttonClick("#panHomeBtn");
-			});
-
-			//test console is empty upon opening
-			casper.then(function () {
-				var spanCount = casper.evaluate(function() {
-					return $("#undefined_console").find("span").length <=4;
-				});
-				test.assertEquals(spanCount, true, "Console output not empty");
-			});
-
-			//test clear command works on console
-			casper.then(function () {
-				var clearConsole = casper.evaluate(function() {
-					return G.clear();
-				});
-				test.assertEquals(clearConsole, "Console history cleared", "G.clear command not null.");
-			});
-
-			//test console is empty after it got cleared
-			casper.then(function () {
-				var spanCount = casper.evaluate(function() {
-					return $("#undefined_console").find("span").length;
-				});
-				test.assertEquals(spanCount, 0, "Console output not empty after G.clear");
-			});
-
-			//disable debug mode now that we are done
-			casper.then(function () {
-				casper.evaluate(function() {
-					G.debug(false);
-				});
-			});
-		});
-	});
-
-
-	casper.then(function () {
-		//test hiding the console
-		casper.then(function () {
-			//buttonClick("#consoleButton");
-			casper.clickLabel('Console', 'span');
-		});
-		casper.waitWhileVisible('#commandInputArea', function () {
-			this.echo("I've waited for console hide.");
-		});
-	});
-}
-
-/* Tests popup widget basic functionality:
- * that it gets created, destroy and changes position/size.
- */
-function popupWidgetTest(test){
-	testWidget(test, 1, "Popup1",490, 394);
-}
-
-/* Tests popup widget basic functionality:
- * that it gets created, destroy and changes position/size.
- */
-function plotWidgetTest(test){
-	testWidget(test, 0, "Plot1", 350, 300);
-}
-
-/* Tests tree visualizer widget basic functionality:
- * that it gets created, destroy and changes position/size.
- */
-function treeVisualizerTest(test){
-	testWidget(test, 3, "TreeVisualiserDAT1", 350, 260);
-}
-
-/* Tests variable visualizer widget basic functionality:
- * that it gets created, destroy and changes position/size.
- */
-function variableVisualizerTest(test){
-	testWidget(test, 5, "VarVis1", 350, 120);
-}
-
-/* Tests units controller functionality.
- */
-function unitsControllerTest(test){
-	//create Plot widget for testing units
-	casper.evaluate(function(){
-		G.addWidget(0);
-	});
-
-	casper.then(function(){
-		this.waitUntilVisible('div[id="Plot1"]', function () {
-			//test unit label without defining external unit, this will test against Math.js values
-			casper.then(function () {
-				var initialPlotLabel = casper.evaluate(function() {
-					return Plot1.getUnitLabel("S / m2");
-				});
-				test.assertEquals(initialPlotLabel, "Electric conductance over surface (S / m<sup>2</sup>)", "Test Plot1 Math.js 'S / m2' unit");
-			});
-
-			//test unit after defining external unit
-			casper.then(function () {
-				var initialPlotLabel = casper.evaluate(function() {
-					GEPPETTO.UnitsController.addUnit("S/m2","Electric conductance OVER density");
-					return Plot1.getUnitLabel("S / m2");
-				});
-				test.assertEquals(initialPlotLabel, "Electric conductance over density (S / m<sup>2</sup>)", "Test Plot1 External 'S / m2' unit");
-			});
-
-			//test unit after defining external unit
-			casper.then(function () {
-				var initialPlotLabel = casper.evaluate(function() {
-					return Plot1.getUnitLabel("S/m2");
-				});
-				test.assertEquals(initialPlotLabel, "Electric conductance over density (S/m<sup>2</sup>)", "Test Plot1 Math.js 'S / m2' unit");
-			});
-
-			casper.then(function () {
-				closeWidget(test, "Plot1");
-			});
-		});
-	});
-}
-
-function testWidget(test, widgetType, widgetIdentifier, originalWidth, originalHeight){
-	//call to created desired widget
-	casper.evaluate(function(widgetType){
-		G.addWidget(widgetType);
-	},widgetType);
-
-	//test widget UI features
-	casper.then(function(){
-		this.waitUntilVisible('div[id="'+widgetIdentifier+'"]', function () {
-			//test widget got created with correct size/dimensions
-			casper.then(function () {
-				var popupSize = casper.evaluate(function(widgetIdentifier) {
-					var widget = eval(widgetIdentifier);
-					return widget.getSize();
-				},widgetIdentifier);
-
-				test.assertEquals(popupSize.width, originalWidth, widgetIdentifier+" initial width correct");
-				test.assertEquals(popupSize.height, originalHeight,widgetIdentifier+ " initial height correct");
-			});
-
-			casper.then(function () {
-				testMaximizeWidget(test, widgetIdentifier,originalWidth, originalHeight);
-			});
-
-			casper.then(function () {
-				testMinimizeWidget(test, widgetIdentifier);		
-			});
-
-			casper.then(function () {
-				testCollapseWidget(test, widgetIdentifier);		
-			});
-
-			casper.then(function () {
-				closeWidget(test, widgetIdentifier);
-			});
-		});
-	});
-}
-
-function testMaximizeWidget(test, widgetIdentifier,originalWidth, originalHeight){
-	//maximize widget
-	casper.then(function () {
-		casper.evaluate(function(widgetIdentifier) {
-			$("#"+widgetIdentifier).parent().find("a")[2].click()
-		},widgetIdentifier);
-	});
-
-	//test widget got maximixed by testing its size
-	casper.then(function () {
-		casper.wait(1000, function () {
-			var popupHeight = casper.evaluate(function(widgetIdentifier) {
-				var widget = eval(widgetIdentifier);
-				return widget.$el.parent().height();
-			},widgetIdentifier);
-
-			var expectedHeight = casper.evaluate(function(widgetIdentifier) {
-				return $(window).height()-5.2;
-			},widgetIdentifier);
-
-			var popupWidth = casper.evaluate(function(widgetIdentifier) {
-				var widget = eval(widgetIdentifier);
-				return widget.$el.parent().width();
-			},widgetIdentifier);
-
-			var expectedWidth = casper.evaluate(function(widgetIdentifier) {
-				return $(window).width();
-			},widgetIdentifier);
-
-			test.assertEquals(popupWidth, expectedWidth, widgetIdentifier+" maximize width correct");
-			test.assertEquals(popupHeight, expectedHeight, widgetIdentifier+" maximize height correct"); 
-		});		
-	});
-
-	//test restoring widget after it got maximized
-	casper.then(function () {
-		casper.evaluate(function(widgetIdentifier) {
-			$("#"+widgetIdentifier).parent().find("a")[2].click()
-		},widgetIdentifier);
-
-		casper.wait(1000, function () {
-			var popupSize = casper.evaluate(function(widgetIdentifier) {
-				var widget = eval(widgetIdentifier);
-				return widget.getSize();
-			},widgetIdentifier);
-
-			test.assertEquals(popupSize.width, originalWidth, widgetIdentifier+" restore width correct");
-			test.assertEquals(popupSize.height, originalHeight, widgetIdentifier+" restore height correct");    
-		});   		
-	});
-}
-
-function testMinimizeWidget(test, widgetIdentifier){
-	//test widget is not yet minimized
-	casper.then(function () {
-		casper.wait(1000, function () {
-			var minimizeBar = casper.evaluate(function(widgetIdentifier) {
-				return $("#dialog-extend-fixed-container").find(".ui-dialog").length;
-			},widgetIdentifier);
-
-			test.assertEquals(minimizeBar, 0, widgetIdentifier+" not minimize, expected and passes correctly.");
-		});		
-	});
-
-	//minimize widget button call
-	casper.then(function () {
-		casper.evaluate(function(widgetIdentifier) {
-			$("#"+widgetIdentifier).parent().find("a")[3].click()
-		},widgetIdentifier);
-	});
-
-	//locate minimized widget in corner of geppetto
-	casper.then(function () {
-		casper.wait(1000, function () {
-			var minimizeBar = casper.evaluate(function(widgetIdentifier) {
-				return $("#dialog-extend-fixed-container").find(".ui-dialog").length;
-			},widgetIdentifier);
-
-			test.assertEquals(minimizeBar, 1, widgetIdentifier+" minimize correctly.");
-		});		
-	});
-
-	//restore minimized widget
-	casper.then(function () {
-		casper.evaluate(function(widgetIdentifier) {
-			$("#"+widgetIdentifier).parent().find("a")[3].click()
-		},widgetIdentifier);
-	});
-
-	//test restored widget is actually restored
-	casper.then(function () {
-		casper.wait(1000, function () {
-			var minimizeBar = casper.evaluate(function(widgetIdentifier) {
-				return $("#dialog-extend-fixed-container").find(".ui-dialog").length;
-			},widgetIdentifier);
-
-			test.assertEquals(minimizeBar, 0, widgetIdentifier+" not minimize, expected and passes correctly.");
-		});		
-	});
-}
-
-function testCollapseWidget(test, widgetIdentifier){
-	//test widget is not yet collapsed
-	casper.then(function () {
-		casper.wait(1000, function () {
-			var collapsedWidget = casper.evaluate(function(widgetIdentifier,collapsedWidgetHeight) {
-				return $("#"+widgetIdentifier).height()<collapsedWidgetHeight;
-			},widgetIdentifier,collapsedWidgetHeight);
-
-			test.assertEquals(collapsedWidget, false, widgetIdentifier+" not collapsed, expected and passes correctly.");
-		});		
-	});
-
-	//collapse widget
-	casper.then(function () {
-		casper.evaluate(function(widgetIdentifier) {
-			$("#"+widgetIdentifier).parent().find("a")[0].click()
-		},widgetIdentifier);
-	});
-
-	//test collapsed widget is actually collapase
-	casper.then(function () {
-		casper.wait(1000, function () {
-			var collapsedWidget = casper.evaluate(function(widgetIdentifier,collapsedWidgetHeight) {
-				return $("#"+widgetIdentifier).height()<collapsedWidgetHeight;
-			},widgetIdentifier,collapsedWidgetHeight);
-
-			test.assertEquals(collapsedWidget, true, widgetIdentifier+" collapsed, expected and passes correctly.");
-		});		
-	});
-
-	//restore collapsed widget
-	casper.then(function () {
-		casper.evaluate(function(widgetIdentifier) {
-			$("#"+widgetIdentifier).parent().find("a")[1].click()
-		},widgetIdentifier);
-	});
-
-	//test restored widget is not collapsed anymore
-	casper.then(function () {
-		casper.wait(1000, function () {
-			var collapsedWidget = casper.evaluate(function(widgetIdentifier,collapsedWidgetHeight) {
-				return $("#"+widgetIdentifier).height()<collapsedWidgetHeight;
-			},widgetIdentifier,collapsedWidgetHeight);
-
-			test.assertEquals(collapsedWidget, false, widgetIdentifier+" not collapsed, expected and passes correctly.");
-		});		
-	});
-}
-
-function closeWidget(test, widgetIdentifier){
-	//destroy widget
-	casper.evaluate(function(widgetIdentifier) {
-		var widget = eval(widgetIdentifier);
-		return widget.destroy();
-	},widgetIdentifier);
-
-	//test destroyed widget no longer exists
-	casper.waitWhileVisible('div[id="'+widgetIdentifier+'"]', function () {
-		this.echo("I've waited for " + widgetIdentifier + " to go away.");
-		test.assertDoesntExist('div[id="'+widgetIdentifier+'"]', widgetIdentifier+" doesn't exist after being destroyed.")
-	}); 		
-}
\ No newline at end of file
diff --git a/tests/casperjs/utilities/TestsUtility.js b/tests/casperjs/utilities/TestsUtility.js
deleted file mode 100644
index e025fa2..0000000
--- a/tests/casperjs/utilities/TestsUtility.js
+++ /dev/null
@@ -1,415 +0,0 @@
-var urlBase = casper.cli.get('host');
-if(urlBase==null || urlBase==undefined){
-    urlBase = "http://127.0.0.1:8080/";
-}
-var baseFollowUp = "org.geppetto.frontend/geppetto?";
-
-var hhcellProject = "load_project_from_id=1";
-var c302Project = "load_project_from_id=6";
-var acnetProject = "load_project_from_id=5";
-var ca1Project = "load_project_from_id=3";
-var cElegansConnectome = "load_project_from_id=16";
-var cElegansMuscleModel = "load_project_from_id=4";
-var cElegansPVDR = "load_project_from_id=8";
-var eyeWire = "load_project_from_id=9";
-var nwbSample = "load_project_from_id=18";
-var Pharyngeal = "load_project_from_id=58";
-var cylinders = "load_project_from_url=https://raw.githubusercontent.com/openworm/org.geppetto.samples/development/UsedInUnitTests/cylinder/geppetto.json";
-var defaultColor = [0.00392156862745098,0.6,0.9098039215686274];
-var zoomClicks = 50, panClicks=10, rotateClicks=20;
-
-function launchTest(test, projectName, timeAllowed){
-    casper.waitWhileVisible('div[id="loading-spinner"]', function () {
-        this.echo("I've waited for "+projectName+" project to load.");
-        test.assertTitle("geppetto", "geppetto title is ok");
-        test.assertExists('div[id="sim-toolbar"]', "geppetto loads the initial simulation controls");
-        test.assertExists('div[id="controls"]', "geppetto loads the initial camera controls");
-        test.assertExists('div[id="foreground-toolbar"]', "geppetto loads the initial foreground controls");
-    },null,timeAllowed);
-}
-
-function resetCameraTest(test,expectedCameraPosition){
-    buttonClick("#panHomeBtn");
-    testCameraPosition(test,expectedCameraPosition);
-}
-
-function resetCameraTestWithCanvasWidget(test,expectedCameraPosition){
-    buttonClick("#panHomeBtn");
-    casper.evaluate(function(){
-        $("#Canvas2_component").find(".position-toolbar").find(".pan-home").click();
-    });
-    testCameraPosition(test,expectedCameraPosition);
-}
-
-function testInitialControlPanelValues(test, values){
-    casper.waitUntilVisible('div#controlpanel', function () {
-        test.assertVisible('div#controlpanel', "The control panel is correctly open.");
-        var rows = casper.evaluate(function() {
-            var rows = $(".standard-row").length;
-            return rows;
-        });
-        test.assertEquals(rows, values, "The control panel opened with right amount of rows");
-    });
-}
-
-function removeAllPlots(){
-    casper.then(function(){
-        casper.evaluate(function() {
-            $("div.js-plotly-plot").remove();
-        });
-        this.wait(1000, function () {});
-    });
-}
-
-function removeAllDialogs(){
-    casper.then(function(){
-        casper.evaluate(function() {
-            $("div.dialog").remove();
-        });
-    });
-}
-
-function buttonClick(buttonName){
-    casper.evaluate(function(buttonName) {
-        $(buttonName).click();
-    },buttonName);
-}
-/**
- * Tests visibility of a mesh
- * @param test
- * @param variableName
- * @param buttonName
- * @returns
- */
-function testVisibility(test,variableName, buttonName){
-    casper.then(function(){
-        testMeshVisibility(test,true,variableName);
-    });
-
-    casper.then(function(){
-        buttonClick(buttonName);
-    });
-
-    casper.then(function(){
-        testMeshVisibility(test,false,variableName);
-    });
-
-    casper.then(function(){
-        buttonClick(buttonName);
-    });
-
-    casper.then(function(){
-        testMeshVisibility(test,true,variableName);
-    });
-}
-
-/**
- * Tests an instance's mesh visibility
- * @param test
- * @param visible
- * @param variableName
- * @returns
- */
-function testMeshVisibility(test,visible,variableName){
-    var visibility = casper.evaluate(function(variableName) {
-        var visibility = Canvas1.engine.getRealMeshesForInstancePath(variableName)[0].visible;
-        return visibility;
-    },variableName);
-
-    test.assertEquals(visibility,visible, variableName +" visibility correct");
-}
-
-/**
- * Tests camera position
- * @param test
- * @param expectedCamPosition
- * @returns
- */
-function testCameraPosition(test,expectedCamPosition){
-    var camPosition = casper.evaluate(function() {
-        var position = Canvas1.engine.camera.position;
-        return [position.x, position.y, position.z];
-    });
-
-    for (var i in camPosition){
-        camPosition[i] = parseFloat(camPosition[i].toFixed(2))
-        expectedCamPosition[i] = parseFloat(expectedCamPosition[i].toFixed(2))
-    }
-
-    test.assertEquals( camPosition[0],expectedCamPosition[0], "Vector's x coordinate is correct as camera position");
-    test.assertEquals( camPosition[1],expectedCamPosition[1], "Vector's y coordinate is correct as camera position");
-    test.assertEquals( camPosition[2],expectedCamPosition[2], "Vector's z coordinate is correct as camera position");
-}
-
-/**
- * Tests default color of mesh
- * @param test
- * @param testColor
- * @param variableName
- * @returns
- */
-function test3DMeshColor(test,testColor,variableName,index){
-    if(index==undefined){
-        index=0;
-    }
-    var color = casper.evaluate(function(variableName,index) {
-        var color = Canvas1.engine.getRealMeshesForInstancePath(variableName)[index].material.color;
-        return [color.r, color.g, color.b];
-    },variableName,index);
-
-    test.assertEquals(color[0],testColor[0], "Red default color is correct for "+ variableName);
-    test.assertEquals(color[1],testColor[1],"Green default color is correct for " + variableName);
-    test.assertEquals(color[2],testColor[2],"Blue default color is correct for " +variableName);
-}
-
-function getMeshColor(test,variableName,index){
-    if(index==undefined){
-        index=0;
-    }
-    var color = casper.evaluate(function(variableName,index) {
-        var color = Canvas1.engine.getRealMeshesForInstancePath(variableName)[index].material.color;
-        return [color.r, color.g, color.b];
-    },variableName,index);
-    return color;
-}
-
-function test3DMeshOpacity(test,opactityExpected,variableName,index){
-    if(index==undefined){
-        index=0;
-    }
-    var opacity = casper.evaluate(function(variableName,index) {
-        var opacity = Canvas1.engine.getRealMeshesForInstancePath(variableName)[index].material.opacity;
-        return opacity;
-    },variableName,index);
-
-    test.assertEquals(opacity,opactityExpected, "Opacity is correct for "+ variableName);
-}
-
-/**
- * Tests color of mesh
- * @param test
- * @param testColor
- * @param variableName
- * @returns
- */
-function test3DMeshColorNotEquals(test,testColor,variableName,index){
-    if(index==undefined){
-        index=0;
-    }
-    var color = casper.evaluate(function(variableName,index) {
-        var color = Canvas1.engine.getRealMeshesForInstancePath(variableName)[index].material.color;
-        return [color.r, color.g, color.b];
-    },variableName,index);
-
-    test.assertNotEquals(testColor[0], color[0], "Red default color is correctly different for "+ variableName);
-    test.assertNotEquals(testColor[1], color[1], "Green default color is correctly different for " + variableName);
-    test.assertNotEquals(testColor[2], color[2], "Blue default color is correctly different for " +variableName);
-}
-
-/**
- * Test Selection of instances in main canvas
- * @param test - Global test variable reference
- * @param variableName - Name of instance to apply selection to
- * @param selectColorVarName - Expected color to find in istance's mesh material
- * @returns
- */
-function testSelection(test,variableName,selectColorVarName){
-    buttonClick("#spotlightBtn");
-    casper.echo("---testSelection----");
-    casper.waitUntilVisible('div#spotlight', function () {
-        casper.sendKeys('input#typeahead', variableName, {keepFocus: true});
-        casper.sendKeys('input#typeahead', casper.page.event.key.Return, {keepFocus: true});
-        casper.waitUntilVisible('button#buttonOne', function () {
-            test.assertVisible('button#buttonOne', "Select button correctly visible");
-            buttonClick("#buttonOne");
-            this.wait(500, function () {
-                var selectColor = [1,0.8,0];
-                casper.echo("---test3DMeshColor----");
-                test3DMeshColor(test,selectColor,selectColorVarName,0);
-            });
-        });
-    });
-}
-
-function closeSpotlight(){
-    casper.evaluate(function() {
-        $("#spotlight").hide();
-    });
-    casper.echo("Clicking to close spotlight");
-}
-
-/**
- * Tests spotlight functionality
- * @param test
- * @param variableName
- * @param plotName
- * @param expectButton
- * @param testSelect
- * @param selectionName
- * @param selectColorVarName
- * @returns
- */
-function testSpotlight(test, variableName,plotName,expectButton,testSelect, selectionName, selectColorVarName){
-    test.assertExists('i.fa-search', "Spotlight button exists")
-    casper.mouseEvent('click', 'i.fa-search', "attempting to open spotlight");
-
-    casper.waitUntilVisible('div#spotlight', function () {
-        test.assertVisible('div#spotlight', "Spotlight opened");
-
-        //type in the spotlight
-        this.sendKeys('input#typeahead', variableName, {keepFocus: true});
-        //press enter
-        this.sendKeys('input#typeahead', this.page.event.key.Return, {keepFocus: true});
-
-        casper.waitUntilVisible('div#spotlight', function () {
-            casper.then(function () {
-                this.echo("Waiting to see if the Plot variables button becomes visible");
-                if(expectButton){
-                    casper.waitUntilVisible('button#plot', function () {
-                        test.assertVisible('button#plot', "Plot variables icon correctly visible");
-                        this.echo("Plot variables button became visible correctly");
-                        buttonClick("#plot");
-                        this.waitUntilVisible(plotName, function () {
-                            this.echo("Plot 2 came up correctly");
-                            if(testSelect){
-                                testSelection(test, selectionName,selectColorVarName);
-                            }
-                        });
-                    }, null, 5000);
-                }else{
-                    casper.wait(1000, function () {
-                        casper.then(function () {
-                            this.echo("Waiting to see if the Plot and watch variable buttons becomes visible");
-                            test.assertDoesntExist('button#plot', "Plot variables icon correctly invisible");
-                            test.assertDoesntExist('button#watch', "Watch button correctly hidden");
-                            this.echo("Variables button are hidden correctly");
-                            if(testSelect){
-                                testSelection(test, selectionName,selectColorVarName);
-                            }
-                        });
-                    });
-                }
-            });
-        });
-    });
-}
-
-/**
- * Tests camera controls for main canvas
- * @param test
- * @param expectedCameraPosition
- * @returns
- */
-function testCameraControls(test, expectedCameraPosition){
-    casper.then(function(){
-        casper.echo("------Zoom-------");
-        casper.repeat(zoomClicks, function() {
-            this.thenClick("button#zoomInBtn", function() {});
-        });
-    });//zoom in
-    casper.then(function(){
-        resetCameraTest(test, expectedCameraPosition);
-    });//reset home camera position
-    casper.then(function(){
-        casper.echo("------Pan-------");
-        casper.repeat(panClicks, function() {
-            this.thenClick("button#panRightBtn", function(){});
-        });
-    });//pan right test
-    casper.then(function(){
-        resetCameraTest(test, expectedCameraPosition);
-    });//reset home position
-    casper.then(function(){
-        casper.echo("------Rotate-------");
-        casper.repeat(rotateClicks, function() {
-            this.thenClick("button#rotateRightBtn", function(){});
-        });
-    });//rotate test
-    casper.then(function(){
-        resetCameraTest(test, expectedCameraPosition);
-    });//reset home
-}
-
-/**
- * Tests Camera controls for Main canvas and a canvas widget
- * @param test
- * @param expectedCameraPosition
- * @returns
- */
-function testCameraControlsWithCanvasWidget(test, expectedCameraPosition){
-    casper.echo("-------Testing Camera Controls while playing experiment--------");
-    casper.then(function(){
-        casper.echo("------Zoom-------");
-        casper.repeat(zoomClicks*2, function() {
-            this.thenClick("button#zoomInBtn", function() {});
-            this.thenClick("#Canvas2 button#zoomInBtn", function() {});
-        });
-    });//zoom in
-    casper.then(function(){
-        resetCameraTestWithCanvasWidget(test, expectedCameraPosition);
-    });//reset home camera position
-    casper.then(function(){
-        casper.echo("------Pan-------");
-        casper.repeat(panClicks*2, function() {
-            this.thenClick("button#panRightBtn", function(){});
-            this.thenClick("#Canvas2 button#panRightBtn", function(){});
-        });
-    });//pan right test
-    casper.then(function(){
-        resetCameraTestWithCanvasWidget(test, expectedCameraPosition);
-    });//reset home position
-    casper.then(function(){
-        casper.echo("------Rotate-------");
-        casper.repeat(rotateClicks*2, function() {
-            this.thenClick("button#rotateRightBtn", function(){});
-            this.thenClick("#Canvas2 button#rotateRightBtn", function(){});
-        });
-    });//rotate test
-    casper.then(function(){
-        resetCameraTestWithCanvasWidget(test, expectedCameraPosition);
-    });//reset home
-}
-
-function testVisualGroup(test,variableName, expectedMeshes,expectedColors){
-    casper.then(function(){
-        casper.echo("-------Testing Highlighted Instance--------");
-        var i=1;
-        casper.repeat(expectedMeshes, function() {
-            casper.echo("Debug Log: variableName "+ variableName+" and i ="+i);
-            var color = casper.evaluate(function(variableName,i) {
-                var color = Canvas1.engine.getRealMeshesForInstancePath(variableName)[i].material.color;
-                return [color.r, color.g, color.b];
-            },variableName,i);
-            test3DMeshColorNotEquals(test,color, variableName);
-            test3DMeshColor(test,expectedColors[i], variableName,i);
-            ++i;
-        });
-    });
-}
-
-function testingConnectionLines(test, expectedLines){
-    casper.then(function(){
-        var connectionLines = casper.evaluate(function() {
-            var connectionLines = Object.keys(Canvas1.engine.connectionLines).length;
-            return connectionLines;
-        });
-        test.assertEquals(expectedLines, connectionLines, "Right amount of connections line");
-    });
-}
-
-function testMoviePlayerWidget(test,id){
-    test.assertExists('div[id="'+id+'"]', "Movie player exists");
-    test.assertExists("iframe[id=\"widget6\"]", "Movie player iframe exists");
-}
-
-function testPlotWidgets(test, widget, variableName, expectedGElements){
-	test.assertExists('div[id="'+widget+'"]', "Plot widget exists")
-
-	casper.then(function(){
-		var gElements = casper.evaluate(function(widget, expectedGElements) {
-			var gElements = $("#"+widget)[0].getElementsByClassName("legendtoggle").length;
-			return gElements;
-		}, widget, expectedGElements);
-		test.assertEquals(gElements, expectedGElements, "Right amount of graph elements for "+widget);
-	});
-}
diff --git a/tests/casperjs/utilities/test_geppetto_server.sh b/tests/casperjs/utilities/test_geppetto_server.sh
deleted file mode 100644
index 024bbbe..0000000
--- a/tests/casperjs/utilities/test_geppetto_server.sh
+++ /dev/null
@@ -1,21 +0,0 @@
-#!/bin/sh
-iterations=1
-Test () {
-	    request_cmd="$(curl -i -o - --silent -X GET --header 'Accept: application/json' --header 'Authorization: _your_auth_code==' 'http://localhost:28081/org.geppetto.frontend')"
-		http_status=$(echo "$request_cmd" | grep HTTP |  awk '{print $2}')
-		echo $http_status
-		if [ "$http_status" == "302" ]; then
-			echo "$(date) - connected successfully!"
-		else
-			if [ "$iterations" == "100" ]; then
-				exit 0
-			else
-				echo "Waiting for docker to finish building.";
-				iterations=$((iterations+1))
-  				sleep 1
-  				Test
-			fi
-		fi
-}
-
-Test
diff --git a/tests/jest-puppeteer/NeuronalTestsLogic.js b/tests/jest-puppeteer/NeuronalTestsLogic.js
deleted file mode 100644
index 8c44886..0000000
--- a/tests/jest-puppeteer/NeuronalTestsLogic.js
+++ /dev/null
@@ -1,980 +0,0 @@
-import { click, wait4selector } from "./utils";
-import { Projects } from "./projects";
-import * as ST from "./selectors";
-import {
-  assertExists,
-  defaultColor,
-  removeAllPlots,
-  testCameraControls, testCameraControlsWithCanvasWidget, resetCameraTest,
-  testInitialControlPanelValues,
-  testMeshVisibility, test3DMeshColor, test3DMeshColorNotEquals, test3DMeshOpacity,
-  testPlotWidgets,
-  testVisibility,
-  testSpotlight, closeSpotlight,
-  testingConnectionLines,
-  testVisualGroup, getMeshColor, isVisible
-
-} from "./functions";
-import { getUrlFromProjectId } from "./cmdline";
-import { launchTest } from "./functions";
-
-export function testSingleComponentHHProject () {
-
-  beforeAll(async () => {
-    await page.goto(getUrlFromProjectId(Projects.HH_CELL));
-  });
-
-  describe('Landing page', () => {
-    it("Spinner goes away", async () => {
-      await wait4selector(page, ST.SPINNER_SELECTOR, { hidden: true })
-    });
-
-    it.each(ST.ELEMENTS_IN_LANDING_PAGE)('%s', async (msg, selector) => {
-      await wait4selector(page, selector, { visible: true, timeout: 10000 })
-    })
-  });
-
-
-  describe('Widgets', () => {
-    it('Right amount of graph elements for Plot1', async () => {
-      await wait4selector(page, ST.PLOT1_SELECTOR, { visible: true, timeout: 30000 });
-      // watch out here (the labels in the plot appear a little after the plot)
-      await page.waitFor(1500);
-      await testPlotWidgets(page, "Plot1", 1);
-    });
-
-    it('Right amount of graph elements for Plot2', async () => {
-      await testPlotWidgets(page, "Plot2", 3);
-    });
-
-    it('Initial amount of experiments for hhcell checked.', async () => {
-      expect(
-        await page.evaluate(async () => window.Project.getExperiments().length)
-      ).toBe(1)
-    });
-
-    it('Top level instance present.', async () => {
-      expect(
-        await page.evaluate(async () => eval('hhcell') != null)
-      ).toBeTruthy()
-    });
-
-    it('2 top Variables as expected for hhcell', async () => {
-      expect(
-        await page.evaluate(async () => window.Model.getVariables().map(v => v.getId()))
-      ).toEqual(expect.arrayContaining(['hhcell', 'time']))
-    });
-
-    it('2 Libraries as expected for hhcell', async () => {
-      expect(
-        await page.evaluate(async () => window.Model.getLibraries() !== undefined && window.Model.getLibraries().length === 2)
-      ).toBeTruthy()
-    });
-
-    it('1 top level instance as expected for hhcell', async () => {
-      expect(
-        await page.evaluate(async () => window.Instances !== undefined && window.Instances.length === 2 && window.Instances[0].getId() === 'hhcell')
-      ).toBeTruthy()
-    });
-
-    it('Checking that time series length is 6001 in variable for hhcell project', async () => {
-      expect(
-        await page.evaluate(async () => eval('hhcell').hhpop[0].bioPhys1.membraneProperties.naChans.na.h.q.getTimeSeries().length === 6001)
-      ).toBeTruthy()
-    });
-
-    it('REPEATED!! Right amount of graph elements for Plot1', async () => {
-      await page.evaluate(async () => Plot1.plotData(eval('hhcell').hhpop[0].v));
-      await testPlotWidgets(page, "Plot1", 1)
-    });
-
-    it('Remove data', async () => {
-      await removeAllPlots(page,);
-    });
-
-    it('Camera controls', async () => {
-      await testCameraControls(page, [0, 0, 30.90193733102435]);
-    })
-
-  });
-
-  describe('Control Panel', () => {
-    it('The control panel opened with right amount of rows.', async () => {
-      await click(page, ST.CONTROL_PANEL_BUTTON);
-      await testInitialControlPanelValues(page, 3);
-    })
-  });
-
-  describe('Mesh', () => {
-    it('Initial visibility correct', async () => {
-      await testMeshVisibility(page, true, ST.HHCELL_SELECTOR);
-    });
-
-    it('Hide correct', async () => {
-      await click(page, ST.HHCELL_CONTROL_PANEL_BUTTON_SELECTOR);
-      await testMeshVisibility(page, false, ST.HHCELL_SELECTOR);
-    });
-
-    it('Visible again correct', async () => {
-      await click(page, ST.HHCELL_CONTROL_PANEL_BUTTON_SELECTOR);
-      await testMeshVisibility(page, true, ST.HHCELL_SELECTOR);
-    })
-  });
-
-  describe('Plot from control panel', () => {
-    it('Plot V', async () => {
-      await click(page, ST.STATE_VARIABLE_FILTER_BUTTON_SELECTOR);
-      await click(page, ST.HHCELL_V_CONTROL_PANEL_BUTTON_SELECTOR);
-      await wait4selector(page, ST.PLOT1_SELECTOR, { visible: true })
-    });
-
-    it('Remove all plots.', async () => {
-      await click(page, ST.PROJECT_FILTER_BUTTON_SELECTOR);
-      await removeAllPlots(page,);
-    });
-
-    it('Correct amount of rows for Global filter.', async () => {
-      expect(
-        await page.evaluate(async () => $(".standard-row").length)
-      ).toBe(10);
-
-      await page.evaluate(async selector => {
-        $(selector).hide()
-      }, ST.CONTROL_PANEL_CONTAINER_SELECTOR)
-    })
-  });
-
-
-  describe('Spotlight', () => {
-    it('Opens and shows correct butttons.', async () => {
-      await click(page, ST.SPOT_LIGHT_BUTTON_SELECTOR);
-      await wait4selector(page, ST.SPOT_LIGHT_SELECTOR, { visible: true });
-    });
-
-    it('Spotlight button exists', async () => {
-      await page.focus(ST.SPOT_LIGHT_SEARCH_INPUT_SELECTOR);
-      await page.keyboard.type(ST.HHCELL_V_SELECTOR);
-      await page.keyboard.press(String.fromCharCode(13))
-    });
-
-    it('Spotlight button exists4', async () => {
-      await page.waitForSelector(ST.SPOT_LIGHT_SELECTOR, { visible: true });
-    });
-
-    it('Plot visible', async () => {
-      await click(page, ST.PLOT_BUTTON_SELECTOR);
-      await wait4selector(page, ST.PLOT1_SELECTOR, { visible: true });
-    });
-
-    it('Close', async () => {
-      await page.evaluate(async selector => $(selector).hide(), ST.SPOT_LIGHT_SELECTOR);
-      await page.evaluate(async () => {
-        const instance = eval('hhcell');
-        GEPPETTO.ComponentFactory.addWidget('CANVAS', { name: '3D Canvas', id: "Canvas2" }, function () {
-          this.setName('Widget Canvas');
-          this.setPosition();
-          this.display([instance])
-        });
-        Plot1.setPosition(0, 300);
-        G.addWidget(1).then(w => {
-          w.setMessage("Hhcell popup");
-        });
-        G.addWidget(1).then(w => {
-          w.setMessage("Hhcell popup 2").addCustomNodeHandler(function () {
-          }, 'click');
-        });
-      })
-    })
-
-  });
-
-  describe('Tutorials', () => {
-    it('Click tut button', async () => {
-      if (await page.$(ST.TUTORIAL_BUTTON_SELECTOR) !== null) {
-        await click(page, ST.TUTORIAL_BUTTON_SELECTOR);
-        await page.evaluate(async () => {
-          const nextBtnSelector = $(".nextBtn");
-          nextBtnSelector.click();
-          nextBtnSelector.click();
-        })
-      }
-    })
-  });
-
-
-  describe('Widget canvas mesh', () => {
-    it('Canvas widget has hhcell', async () => {
-      expect(
-        await page.evaluate(async selector => window.Canvas2.engine.getRealMeshesForInstancePath(selector).length, ST.HHCELL_SELECTOR)
-      ).toBe(1)
-    })
-  });
-
-  describe('Camera Controls on main Canvas and Canvas widget', () => {
-    it('Canvas widget has hhcell', async () => {
-      await testCameraControlsWithCanvasWidget(page, [0, 0, 30.90193733102435])
-    })
-  });
-
-  describe('Color Function', () => {
-    it('More than one color function instance found.', async () => {
-      const initialColorFunctions = await page.evaluate(async () => GEPPETTO.SceneController.getColorFunctionInstances().length);
-      await page.evaluate(async () => {
-        GEPPETTO.SceneController.addColorFunction(GEPPETTO.ModelFactory.instances.getInstance(GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v'), false), window.voltage_color);
-        Project.getActiveExperiment().play({ step: 10 });
-      });
-      expect(
-        await page.evaluate(async () => GEPPETTO.SceneController.getColorFunctionInstances().length)
-      ).not.toBe(initialColorFunctions)
-    })
-  });
-
-  describe('Widgets stored in View', () => {
-    it('Reload page', async () => {
-      /*
-       * TODO? / FIXME? / OK?: I thought casper test was reloading the page at this point, but it is not.
-       * await page.reload();
-       */
-      await wait4selector(page, ST.SPINNER_SELECTOR, { hidden: true })
-    });
-
-    it('Widgets stored in View state come up', async () => {
-      await wait4selector(page, ST.CANVAS_2_DIV_SELECTOR, { visible: true });
-      await wait4selector(page, ST.PLOT_1_DIV_SELECTOR, { visible: true });
-      await wait4selector(page, ST.POPUP_1_DIV_SELECTOR, { visible: true });
-      await wait4selector(page, ST.POPUP_2_DIV_SELECTOR, { visible: true })
-    });
-
-    describe('Tutorials', () => {
-      it('Tutorial1 step restored correctly', async () => {
-        if (await page.$(ST.TUTORIAL_BUTTON_SELECTOR) !== null) {
-          await page.wait4selector(page, ST.TUTORIAL_1_DIV_SELECTOR, { visible: true });
-          expect(
-            await page.evaluate(async () => window.Tutorial1.state.currentStep)
-          ).toBe(2)
-        }
-      })
-    });
-
-    it('Popup1 message restored correctly.', async () => {
-      expect(
-        await page.evaluate(async selector => $(selector).html(), ST.POPUP_1_SELECTOR)
-      ).toBe("Hhcell popup")
-    });
-
-    it('Popup2 custom handlers event restored correctly.', async () => {
-      const popUpCustomHandler = await page.evaluate(async () => window.Popup2.customHandlers);
-      expect(popUpCustomHandler.length).toBe(1);
-      expect(popUpCustomHandler[0].event).toBe("click")
-    });
-
-    it('Canvas2 hhcell set correctly', async () => {
-      expect(
-        await page.evaluate(async selector => !!Canvas1.engine.meshes["hhcell.hhpop[0]"], ST.HHCELL_SELECTOR)
-      ).toBeTruthy()
-    })
-  })
-}
-
-export function testACNET2Project () {
-
-  beforeAll(async () => {
-    await launchTest(Projects.ACNET);
-  });
-
-  describe('Primary Auditory Cortary', () => {
-
-    it("Load Project Spinner", async () => {
-      await page.waitForSelector(ST.LOADING_SPINNER, { hidden: true });
-    });
-
-    it("Initial amount of experiments for ACNE2", async () => {
-      expect(
-        await page.evaluate(async () => window.Project.getExperiments().length)
-      ).toBe(2)
-    });
-
-    it('Top level instance', async () => {
-      expect(
-        await page.evaluate(async () => eval('acnet2') != null)
-      ).toBeTruthy()
-    });
-
-    it("Instances exploded", async () => {
-      expect(
-        await page.evaluate(async () => acnet2.baskets_12[3] !== undefined
-                    && acnet2.pyramidals_48[12] !== undefined)
-      ).toBeTruthy();
-    });
-
-    it("Bask and pyramidal connections after resolveAllImportTypes() call", async () => {
-      await page.evaluate(async () => Model.neuroml.resolveAllImportTypes(window.callPhantom));
-      expect(
-        await page.evaluate(async () => acnet2.baskets_12[9].getConnections().length === 60
-                    && acnet2.pyramidals_48[23].getConnections().length === 22)
-      ).toBeTruthy();
-    });
-
-    it("5 Visual Groups on pyramidals", async () => {
-      expect(
-        await page.evaluate(async () => acnet2.pyramidals_48[23].getVisualGroups().length)
-      ).toBe(5);
-    });
-
-    it("2 top Variables for ACNET2", async () => {
-      expect(
-        await page.evaluate(async () => window.Model.getVariables() !== undefined
-                    && window.Model.getVariables().length === 2
-                    && window.Model.getVariables()[0].getId() === 'acnet2'
-                    && window.Model.getVariables()[1].getId() === 'time')
-      ).toBeTruthy();
-    });
-
-    it("2 Libraries for ACNET2", async () => {
-      expect(
-        await page.evaluate(async () => window.Model.getLibraries() !== undefined
-                    && window.Model.getLibraries().length === 2)
-      ).toBeTruthy();
-    });
-
-    it("1 top level instance for ACNET2", async () => {
-      expect(
-        await page.evaluate(async () => window.Instances !== undefined
-                    && window.Instances.length === 2
-                    && window.Instances[0].getId() === 'acnet2')
-      ).toBeTruthy();
-    });
-
-    it("Remove Plots", async () => {
-      await removeAllPlots(page);
-    });
-
-
-  });
-
-  describe('Camera Controls', () => {
-    it('Camera controls', async () => {
-      await testCameraControls(page, [231.95608349343888, 508.36555704435455, 1849.839]);
-    })
-  });
-
-  describe('Original Colors', () => {
-    it('Original Colors', async () => {
-      await test3DMeshColor(page, [0.796078431372549, 0, 0], "acnet2.pyramidals_48[0]", 0);
-      await test3DMeshColor(page, [0.796078431372549, 0, 0], "acnet2.pyramidals_48[47]", 0);
-      await test3DMeshColor(page, [0, 0.2, 0.596078431372549], "acnet2.baskets_12[0]", 0);
-      await test3DMeshColor(page, [0, 0.2, 0.596078431372549], "acnet2.baskets_12[11]", 0);
-    })
-  });
-
-  describe('Control Panel ACNET2', () => {
-    it('The control panel opened with right amount of rows', async () => {
-      await click(page, ST.CONTROL_PANEL_BUTTON);
-      await testInitialControlPanelValues(page, 10);
-    })
-  });
-
-  describe('Mesh ACNET2', () => {
-    it('Mesh Visibility', async () => {
-      await testVisibility(page, ST.ACNET2_SELECTOR, '#' + ST.ACNET2_CONTROL_PANEL_BUTTON_SELECTOR);
-    });
-  });
-
-  describe('Plot from Control Panel', () => {
-    it('Plot V', async () => {
-      await click(page, ST.STATE_VARIABLE_FILTER_BUTTON_SELECTOR);
-      await wait4selector(page, ST.ACNET2_V_CONTROL_PANEL_BUTTON, { visible: true });
-      await click(page, '#' + ST.ACNET2_V_CONTROL_PANEL_BUTTON_SELECTOR)
-    });
-
-    it('Hide Plot 1', async () => {
-      await wait4selector(page, ST.PLOT1_SELECTOR, { visible: true });
-      await assertExists(page, ST.PLOT1_SELECTOR);
-      await page.evaluate(async selector => {
-        $(selector).hide()
-      }, ST.CONTROL_PANEL_CONTAINER_SELECTOR)
-    });
-
-    it('Remove all plots.', async () => {
-      await removeAllPlots(page);
-    });
-
-  });
-
-  describe('Spotlight Soma V', () => {
-    it('Spotlight', async () => {
-      await testSpotlight(page, ST.ACNET2_V1_SELECTOR, ST.PLOT1_SELECTOR, true, true, ST.ACNET2_SELECTOR, ST.ACNET2_SELECTOR);
-    });
-
-    it('Close', async () => {
-      await closeSpotlight(page)
-    })
-  });
-
-  describe('Connected cells to Instance', () => {
-
-    it('Connection Lines.', async () => {
-      await testingConnectionLines(page, 23);
-    });
-
-    it('3D Mesh Colors Not Default', async () => {
-      await test3DMeshColorNotEquals(page, defaultColor, ST.ACNET2_BASKET_SELECTOR4);
-    });
-
-    it('3D Mesh Colors Baskets 4', async () => {
-      await test3DMeshColor(page, [0.39215686274509803, 0.5882352941176471, 0.08235294117647059], ST.ACNET2_BASKET_SELECTOR4);
-    });
-
-    it('3D Mesh Colors Not Default Baskets 1', async () => {
-      await test3DMeshColorNotEquals(page, defaultColor, ST.ACNET2_BASKET_SELECTOR1);
-    });
-
-    it('3D Mesh Colors Baskets 4 ACNET2', async () => {
-      await test3DMeshColor(page, [1, 0.35294117647058826, 0.00784313725490196], ST.ACNET2_BASKET_SELECTOR1);
-    });
-
-    it('3D Mesh Opacity Baskets 4', async () => {
-      await test3DMeshOpacity(page, 0.3, ST.ACNET2_BASKET_SELECTOR1);
-    });
-
-    it('3D Mesh Opacity Baskets 1', async () => {
-      await test3DMeshOpacity(page, 0.3, ST.ACNET2_BASKET_SELECTOR1);
-    });
-  });
-
-  describe('Spotlight Biophys', () => {
-    it('Spotlight', async () => {
-      await testSpotlight(page, ST.ACNET2_gDensity_SELECTOR, ST.PLOT1_SELECTOR, false, false, ST.ACNET2_SELECTOR);
-    });
-
-  });
-
-  describe('Opacity', () => {
-
-    it('Deselect', async () => {
-      await page.evaluate(() => acnet2.pyramidals_48[0].deselect());
-    });
-
-    it('3D Mesh Opacity 1', async () => {
-      await test3DMeshOpacity(page, 1, ST.ACNET2_BASKET_SELECTOR1);
-    });
-
-    it('3D Mesh Opacity 4', async () => {
-      await test3DMeshOpacity(page, 1, ST.ACNET2_BASKET_SELECTOR4);
-    });
-
-    it('Close Spotlight', async () => {
-      await closeSpotlight(page)
-    })
-
-  });
-
-  describe('Widgets and Camera', () => {
-
-    it('Add Widget', async () => {
-      await page.evaluate(() => {
-        GEPPETTO.ComponentFactory.addWidget('CANVAS', { name: '3D Canvas', }, function () {
-          this.setName('Widget Canvas');
-          this.setPosition();
-          this.display([acnet2])
-        });
-        Plot1.setPosition(0, 300); // get out of the way
-        acnet2.baskets_12[4].getVisualGroups()[0].show(true);
-      });
-    });
-
-    // it('Camera', async () => {
-    //   await testCameraControlsWithCanvasWidget(page, [231.95608349343888, 508.36555704435455, 1849.839]);
-    // });
-  });
-
-  describe('Visual Group', () => {
-
-    it('Visual Group Baskets 0', async () => {
-      await testVisualGroup(page, ST.ACNET2_BASKET_SELECTOR0, 2, [[], [0, 0.4, 1], [0.6, 0.8, 0]]);
-    });
-
-    it('Visual Group Baskets 5', async () => {
-      await testVisualGroup(page, ST.ACNET2_BASKET_SELECTOR5, 2, [[], [0, 0.4, 1], [0.6, 0.8, 0]]);
-
-    });
-  });
-
-  describe('Geometry', () => {
-
-    it('Set Geometry Cylinders ACNET2', async () => {
-      await page.evaluate(() => acnet2.pyramidals_48[0].setGeometryType("cylinders"));
-    });
-
-    it('Mesh Geometry', async () => {
-      const meshType = await page.evaluate(variableName => Canvas1.engine.getRealMeshesForInstancePath(variableName)[0].type, ST.ACNET2_SELECTOR);
-      expect(meshType).toEqual("Mesh");
-    });
-
-    it('Mesh Total', async () => {
-      const meshTotal = await page.evaluate(() => Object.keys(Canvas1.engine.meshes).length);
-      expect(meshTotal).toEqual(60);
-
-    });
-
-    it('Set Geometry Lines / 3D Mesh Color', async () => {
-      const color = await getMeshColor(page, ST.ACNET2_SELECTOR);
-      await page.evaluate(() => acnet2.pyramidals_48[0].setGeometryType("lines"));
-      await test3DMeshColor(page, color, ST.ACNET2_SELECTOR);
-
-    });
-
-    it('LineSegments Geometry', async () => {
-      const meshType = await page.evaluate(variableName => Canvas1.engine.getRealMeshesForInstancePath(variableName)[0].type, ST.ACNET2_SELECTOR);
-      expect(meshType).toEqual("LineSegments");
-
-    });
-
-    it('Mesh Total ACNET2', async () => {
-      const meshTotal = await page.evaluate(() => Object.keys(Canvas1.engine.meshes).length);
-      expect(meshTotal).toEqual(60);
-
-    });
-
-    it('Set Geometry Cylinders ACNET2', async () => {
-      await page.evaluate(() => acnet2.pyramidals_48[0].setGeometryType("cylinders"));
-    });
-
-    it('Mesh Geometry ACNET2', async () => {
-      const meshType = await page.evaluate(variableName => Canvas1.engine.getRealMeshesForInstancePath(variableName)[0].type, ST.ACNET2_SELECTOR);
-      expect(meshType).toEqual("Mesh");
-    });
-
-    it('3D Mesh Color', async () => {
-      const color = await getMeshColor(page, ST.ACNET2_SELECTOR);
-      await test3DMeshColor(page, color, ST.ACNET2_SELECTOR);
-    });
-
-    it('Mesh Total ACNET2 pos', async () => {
-      const meshTotal = await page.evaluate(() => Object.keys(Canvas1.engine.meshes).length);
-      expect(meshTotal).toEqual(60);
-    });
-
-  });
-
-  describe('Colors', () => {
-
-    it('Add Color Function', async () => {
-      const initialColorFunctions = await page.evaluate(() => GEPPETTO.SceneController.getColorFunctionInstances().length);
-      await page.evaluate(() => {
-        GEPPETTO.SceneController.addColorFunction(GEPPETTO.ModelFactory.instances.getInstance(GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v'), false), window.voltage_color);
-        Project.getActiveExperiment().play({ step: 10 });
-      });
-      const colorFunctionInstances = await page.evaluate(() => GEPPETTO.SceneController.getColorFunctionInstances().length);
-      expect(initialColorFunctions).not.toEqual(colorFunctionInstances);
-
-    });
-  });
-
-}
-
-export function testC302NetworkProject () {
-
-  beforeAll(async () => {
-    await launchTest(Projects.C302);
-  });
-
-
-  describe('Initial Values', () => {
-
-    it('Loading Spinner', async () => {
-      await page.waitForSelector(ST.LOADING_SPINNER, { hidden: true});
-      await page.waitFor(30000);
-      if (await isVisible(page, ST.LOADING_SPINNER)){
-        await page.waitForSelector(ST.LOADING_SPINNER, { hidden: true });
-      }
-    });
-
-    it('Plot 1', async () => {
-      await wait4selector(page, ST.PLOT1_SELECTOR, { visible: true });
-      await assertExists(page, ST.PLOT1_SELECTOR)
-    });
-
-    it('Amount of Experiments', async () => {
-      const experiments = await page.evaluate(() => window.Project.getExperiments().length);
-      expect(experiments).toEqual(2);
-    });
-
-    it('Amount of Children', async () => {
-      const experiments = await page.evaluate(() => c302.getChildren().length);
-      expect(experiments).toEqual(299);
-    });
-
-    it('Top Level Instance', async () => {
-      const experiments = await page.evaluate(() => c302 != null);
-      expect(experiments).toEqual(true);
-    });
-
-  });
-
-  describe('Resolved Connections', () => {
-    it('ADAL Connections', async () => {
-      const connections = await page.evaluate(() => c302.ADAL[0].getConnections().length);
-      expect(connections).toEqual(31);
-    });
-
-    it('AVAL Connections', async () => {
-      const connections = await page.evaluate(() => c302.AVAL[0].getConnections().length);
-      expect(connections).toEqual(170);
-    });
-
-    it('PVDRD Connections', async () => {
-      const connections = await page.evaluate(() => c302.PVDR[0].getConnections().length);
-      expect(connections).toEqual(7);
-    });
-  });
-
-  describe('Resolve All Imports', () => {
-    it('Resolve All Imports', async () => {
-      await page.evaluate(() => Model.neuroml.resolveAllImportTypes(window.callPhantom));
-      await page.waitForSelector(ST.LOADING_SPINNER, { visible: true });
-      await page.waitForSelector(ST.LOADING_SPINNER, { hidden: true });
-    });
-
-    it('Top Variables', async () => {
-      const op = await page.evaluate(() => window.Model.getVariables() !== undefined && window.Model.getVariables().length === 2
-                      && window.Model.getVariables()[0].getId() === 'c302' && window.Model.getVariables()[1].getId() === 'time');
-      expect(op).toBeTruthy();
-    });
-
-    it('Libraries', async () => {
-      const op = await page.evaluate(() => window.Model.getLibraries() !== undefined && window.Model.getLibraries().length === 2);
-      expect(op).toBeTruthy();
-    });
-
-    it('Top Level Instances', async () => {
-      const op = await page.evaluate(() => window.Instances !== undefined && window.Instances.length === 2 && window.Instances[0].getId() === 'c302');
-      expect(op).toBeTruthy();
-    });
-
-  });
-
-  describe('Camera Controls c302', () => {
-    it('Reset Camera', async () => {
-      await resetCameraTest(page, [49.25, -0.8000001907348633, 733.3303486467378]);
-    });
-
-    it("Remove Plots", async () => {
-      await removeAllPlots(page);
-    });
-
-    it('Camera Controls', async () => {
-      await testCameraControls(page, [49.25, -0.8000001907348633, 733.3303486467378]);
-    })
-  });
-
-  describe('Mesh c302', () => {
-    it('3D Mesh Colors', async () => {
-      await test3DMeshColor(page, defaultColor, ST.C302_SELECTOR);
-    });
-  });
-
-  describe('Control Panel c302', () => {
-    it('Initial Amount of Rows', async () => {
-      await click(page, ST.CONTROL_PANEL_BUTTON);
-      await testInitialControlPanelValues(page, 10);
-    });
-
-    it('Plot V', async () => {
-      await click(page, ST.STATE_VARIABLE_FILTER_BUTTON_SELECTOR);
-      await page.waitForSelector(ST.C302_V_CONTROL_PANEL_BUTTON_SELECTOR, { visible: true });
-      await click(page, ST.C302_V_CONTROL_PANEL_BUTTON_SELECTOR);
-    });
-
-    it('Standard Rows', async () => {
-      await wait4selector(page, ST.PLOT1_SELECTOR, { visible: true });
-      await click(page, ST.PROJECT_FILTER_BUTTON_SELECTOR);
-      await page.waitFor(1000);
-      const rows = await page.evaluate(() => $(".standard-row").length);
-      expect(rows).toEqual(10);
-      await page.evaluate(async selector => {
-        $(selector).hide()
-      }, ST.CONTROL_PANEL_CONTAINER_SELECTOR)
-    });
-
-    it('Spotlight', async () => {
-      await testSpotlight(page, ST.C302_V_SELECTOR, ST.PLOT2_SELECTOR, true, false);
-    });
-  });
-
-  describe('Spotlight c302', () => {
-    it('Spotlight', async () => {
-      await testSpotlight(page, ST.C302_V_SELECTOR, ST.PLOT2_SELECTOR, true, false);
-    });
-
-    it('Close', async () => {
-      await closeSpotlight(page)
-    })
-  });
-
-  describe('Widgets and Camera c302', () => {
-
-    it('Add Widget', async () => {
-      await page.evaluate(() => {
-        GEPPETTO.ComponentFactory.addWidget('CANVAS', { name: '3D Canvas', }, function () {
-          this.setName('Widget Canvas');
-          this.setPosition();
-          this.display([c302])
-        });
-        Plot1.setPosition(0, 300);
-      });
-    });
-
-    it('Camera', async () => {
-      await testCameraControlsWithCanvasWidget(page, [49.25, -0.8000001907348633, 733.3303486467378]);
-    });
-  });
-
-  describe('Colors c302', () => {
-
-    it('Add Color Function', async () => {
-      const initialColorFunctions = await page.evaluate(() => GEPPETTO.SceneController.getColorFunctionInstances().length);
-      await page.evaluate(() => {
-        GEPPETTO.SceneController.addColorFunction(GEPPETTO.ModelFactory.instances.getInstance(GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v'), false), window.voltage_color);
-        Project.getActiveExperiment().play({ step: 10 });
-      });
-      const colorFunctionInstances = await page.evaluate(() => GEPPETTO.SceneController.getColorFunctionInstances().length);
-      expect(initialColorFunctions).not.toEqual(colorFunctionInstances);
-    });
-  });
-}
-
-export function testCa1Project () {
-
-  beforeAll(async () => {
-    await launchTest(Projects.CA1);
-  });
-
-
-  describe('Control Panel CA1', () => {
-    it('Initial Amount of Rows', async () => {
-      await page.waitForSelector(ST.LOADING_SPINNER, { hidden: true, timeout: 45000});
-      await page.waitFor(30000);
-      if (await isVisible(page, ST.LOADING_SPINNER)){
-        await page.waitForSelector(ST.LOADING_SPINNER, { hidden: true, timeout: 45000 });
-      }
-      await click(page, ST.CONTROL_PANEL_BUTTON);
-      await testInitialControlPanelValues(page, 3);
-    });
-
-    it('Hide Control Panel', async () => {
-      await click(page, ST.STATE_VARIABLE_FILTER_BUTTON_SELECTOR);
-      await click(page, ST.PROJECT_FILTER_BUTTON_SELECTOR);
-      await page.evaluate(async selector => {
-        $(selector).hide()
-      }, ST.CONTROL_PANEL_CONTAINER_SELECTOR)
-    });
-
-    it('Spotlight', async () => {
-      await testSpotlight(page, ST.CA1_V_SELECTOR, '', false, false);
-    });
-
-    it('Close', async () => {
-      await closeSpotlight(page)
-    })
-  });
-
-}
-
-export function testPVDRNeuronProject () {
-
-  beforeAll(async () => {
-    await launchTest(Projects.PVDR);
-  });
-
-
-  describe('Initial Values PVDR', () => {
-
-    it('Amount of Experiments', async () => {
-      await page.waitForSelector(ST.LOADING_SPINNER, { hidden: true });
-      const experiments = await page.evaluate(() => window.Project.getExperiments().length);
-      expect(experiments).toEqual(1);
-    });
-
-    it('Active Experiment', async () => {
-      const experiment = await page.evaluate(() => window.Project.getActiveExperiment().getId());
-      expect(experiment).toEqual(1);
-    });
-
-    it('Top Level Instance', async () => {
-      const variable = await page.evaluate(() => pvdr != null);
-      expect(variable).toBeTruthy();
-    });
-
-    it('Connections', async () => {
-      const connections = await page.evaluate(() => pvdr.getConnections().length);
-      expect(connections).toEqual(0);
-    });
-
-    it('Visual Groups', async () => {
-      const visualGroups = await page.evaluate(() => pvdr.getVisualGroups().length);
-      expect(visualGroups).toEqual(1);
-    });
-
-    it('Top Level Variables', async () => {
-      const variables = await page.evaluate(() => window.Model.getVariables() !== undefined && window.Model.getVariables().length === 2
-                && window.Model.getVariables()[0].getId() === 'pvdr' && window.Model.getVariables()[1].getId() === 'time');
-      expect(variables).toBeTruthy()
-    });
-
-    it('Libraries', async () => {
-      const libraries = await page.evaluate(() => window.Model.getLibraries() !== undefined && window.Model.getLibraries().length === 2);
-      expect(libraries).toBeTruthy()
-    });
-
-    it('Top Level Instances', async () => {
-      const instances = await page.evaluate(() => window.Instances !== undefined && window.Instances.length === 2 && window.Instances[0].getId() === 'pvdr');
-      expect(instances).toBeTruthy()
-    });
-
-  });
-}
-
-export function testC302Connectome () {
-  beforeAll(async () => {
-    await launchTest(Projects.CONNECTOME);
-  });
-
-  describe('C302 Connectome', () => {
-    it('POPUP 1', async () => {
-      await wait4selector(page, ST.POPUP_1_DIV_SELECTOR, { visible: true, timeout: 200000 });
-    });
-  });
-}
-
-export function testPMuscleCellProject () {
-  beforeAll(async () => {
-    await launchTest(Projects.PMUSCLE);
-  });
-
-  describe('Initial Values PMUSCLE', () => {
-    it('POPUP 1', async () => {
-      await wait4selector(page, ST.POPUP_1_DIV_SELECTOR, { visible: true, timeout: 200000 });
-    });
-
-    it('Amount of Experiments', async () => {
-      const experiments = await page.evaluate(() => window.Project.getExperiments().length);
-      expect(experiments).toEqual(1);
-    });
-
-    it('Active Experiment', async () => {
-      const experiment = await page.evaluate(() => window.Project.getActiveExperiment().getId());
-      expect(experiment).toEqual(1);
-    });
-
-    it('Top Level Instance', async () => {
-      const variable = await page.evaluate(() => net1 != null);
-      expect(variable).toBeTruthy();
-    });
-
-    it('Children', async () => {
-      const children = await page.evaluate(() => net1.getChildren().length);
-      expect(children).toEqual(2);
-    });
-
-    it('Connections', async () => {
-      const connections = await page.evaluate(() => net1.getConnections().length);
-      expect(connections).toEqual(0);
-    });
-
-    it('Visual Group Capability ', async () => {
-      const visualGroups = await page.evaluate(() => !net1.neuron[0].getVisualType().hasCapability('VisualGroupCapability'));
-      expect(visualGroups).toBeTruthy()
-    });
-
-    it('Visual Capability Neuron ', async () => {
-      const visualGroups = await page.evaluate(() => net1.neuron[0].getVisualType().hasCapability('VisualCapability'));
-      expect(visualGroups).toBeTruthy()
-    });
-
-    it('Visual Capability Muscle ', async () => {
-      const visualGroups = await page.evaluate(() => net1.muscle[0].getVisualType().hasCapability('VisualCapability'));
-      expect(visualGroups).toBeTruthy()
-    });
-
-    it('Top Level Variables', async () => {
-      const variables = await page.evaluate(() => window.Model.getVariables() !== undefined && window.Model.getVariables().length === 2
-                && window.Model.getVariables()[0].getId() === 'net1' && window.Model.getVariables()[1].getId() === 'time');
-      expect(variables).toBeTruthy()
-    });
-
-    it('Libraries', async () => {
-      const libraries = await page.evaluate(() => window.Model.getLibraries() !== undefined && window.Model.getLibraries().length === 2);
-      expect(libraries).toBeTruthy()
-    });
-
-    it('Top Level Instances', async () => {
-      const instances = await page.evaluate(() => window.Instances !== undefined && window.Instances.length === 2 && window.Instances[0].getId() === 'net1');
-      expect(instances).toBeTruthy()
-    });
-  });
-}
-
-
-export function testCylindersProject () {
-  beforeAll(async () => {
-    await launchTest(null, Projects.CYLINDER);
-  });
-
-  describe('Cylinder', () => {
-    it('Rotations', async () => {
-      await wait4selector(page, ST.LOADING_SPINNER, {hidden: true, timeout: 200000});
-
-      const evaluation = await page.evaluate(() =>
-      {
-        const reference =
-            {"Example2.Pop_OneSeg[0]":[0, Math.PI/2, 0, "XYZ"],
-              "Example2.Pop_OneSeg[1]":[0, Math.PI/2, 0, "XYZ"],
-              "Example2.Pop_TwoSeg[0]":[0, 0, 0, "XYZ"]};
-        let results = [];
-
-        for (let path in reference) {
-          let rotation = Canvas1.engine.meshes[path].rotation.toArray();
-          let expected = reference[path];
-          for (let i=0; i<rotation.length; ++i)
-            results.push(rotation[i] === expected[i]);
-        }
-
-        return results.every(function(x){return x;});
-      });
-
-      expect(evaluation).toBeTruthy();
-    });
-  });
-}
-
-export function testPharyngealProject () {
-  beforeAll(async () => {
-    await launchTest(Projects.PHARYNGEAL);
-  });
-
-  describe('Control Panel PHARYNGEAL', () => {
-    it('The control panel opened with right amount of rows.', async () => {
-      await page.waitForSelector(ST.LOADING_SPINNER, { hidden: true, timeout: 45000});
-      await page.waitFor(30000);
-      if (await isVisible(page, ST.LOADING_SPINNER)){
-        await page.waitForSelector(ST.LOADING_SPINNER, { hidden: true, timeout: 45000 });
-      }
-      await click(page, ST.CONTROL_PANEL_BUTTON);
-      await testInitialControlPanelValues(page, 10);
-    })
-  });
-}
-
-export function testEyeWireProject () {
-  beforeAll(async () => {
-    await launchTest(Projects.EYEWIRE);
-  });
-
-  describe('EyeWire', () => {
-    it('Load.', async () => {
-      await wait4selector(page, ST.LOADING_SPINNER, { hidden: true, timeout: 45000 });
-    })
-  });
-}
-
diff --git a/tests/jest-puppeteer/TestDefaultProjects.js b/tests/jest-puppeteer/TestDefaultProjects.js
deleted file mode 100644
index d073b3e..0000000
--- a/tests/jest-puppeteer/TestDefaultProjects.js
+++ /dev/null
@@ -1,36 +0,0 @@
-
-import {
-  testSingleComponentHHProject,
-  testACNET2Project,
-  testC302NetworkProject,
-  testCa1Project,
-  testPVDRNeuronProject,
-  testPMuscleCellProject,
-  testC302Connectome,
-  testCylindersProject,
-  testPharyngealProject,
-  testEyeWireProject
-} from './NeuronalTestsLogic'
-import {testDashboard} from "./functions";
-
-
-describe('Test Default Projects', () => {
-  beforeAll(async () => {
-    await jestPuppeteer.resetBrowser();
-    jest.setTimeout(200000);
-  });
-
-  describe('Test Dashboard', () => testDashboard());
-  describe('Single Component HH Project', () => testSingleComponentHHProject());
-  describe('Acnet Project', () => testACNET2Project());
-  describe('C302 Network Project', () => testC302NetworkProject());
-  describe('Ca1 Project', () => testCa1Project());
-  describe('EyeWire Project', () => testEyeWireProject());
-  describe('Pharyngeal Project', () => testPharyngealProject());
-  describe('cElegansConnectome Project', () => testC302Connectome());
-  describe('cElegansMuscleModel Project', () => testPMuscleCellProject());
-  describe('cElegansPVDR Project', () => testPVDRNeuronProject());
-
-  // TODO: Uncomment after https://github.com/openworm/geppetto-client/pull/94
-  // describe('Cylinders Project', () => testCylindersProject());
-});
diff --git a/tests/jest-puppeteer/TestGeppettoModel.js b/tests/jest-puppeteer/TestGeppettoModel.js
deleted file mode 100644
index 08fea84..0000000
--- a/tests/jest-puppeteer/TestGeppettoModel.js
+++ /dev/null
@@ -1,221 +0,0 @@
-const puppeteer = require('puppeteer');
-const { TimeoutError } = require('puppeteer/Errors');
-
-import { getCommandLineArg, getUrlFromProjectId } from './cmdline.js';
-import { wait4selector, click } from './utils';
-
-import * as ST from './selectors';
-
-describe('Test Geppetto Model', () => {
-    beforeAll(async () => {
-        jest.setTimeout(60000);
-
-        await page.goto(getUrlFromProjectId(5));
-    });
-
-    afterAll(async () => {
-    })
-
-    /*The Primary Auditory Cortext Network Project is used to test the Geppetto Model Factory*/
-    describe('Open Primary Auditory Cortex Network Project with ID 5', () => {
-        //Tests the landing page of the project is all good, with UI components present
-        describe('Landing page', () => {
-            it("Spinner goes away", async () => {
-                await wait4selector(page, ST.SPINNER_SELECTOR, { hidden: true , timeout: 60000})
-            })
-
-            it.each(ST.ELEMENTS_IN_LANDING_PAGE)('%s', async (msg, selector) => {
-                await wait4selector(page, selector, { visible: true, timeout: 60000 })
-            })
-
-            it('Initial Plot1 Created', async () => {
-                await wait4selector(page, ST.PLOT1_SELECTOR, { visible: true, timeout: 30000 });
-            })
-
-        })
-
-        /*Starts testing Model Factory*/
-        describe('Tests Model Factory using the  Primary Auditory Cortex Network Project.', () => {
-            it('Initial amount of experiments for hhcell checked.', async () => {
-                expect(
-                    await page.evaluate(async () => window.Project.getExperiments().length)
-                ).toBe(2)
-            })
-
-            it('Top level instance present.', async () => {
-                expect(
-                    await page.evaluate(async () => eval('acnet2') != null)
-                ).toBeTruthy()
-            })
-
-            it('Model is not undefined', async () => {
-                expect(
-                    await page.evaluate(async () => window.Model != undefined)
-                ).toBeTruthy()
-            })
-
-            it('2 Variables as expected', async () => {
-                expect(
-                    await page.evaluate(async () => window.Model.getVariables().length == 2)
-                ).toBeTruthy()
-            })
-
-            it('2 Libraries as expected', async () => {
-                expect(
-                    await page.evaluate(async () => window.Model.getLibraries().length == 2)
-                ).toBeTruthy()
-            })
-
-            it('Instances are not undefined', async () => {
-                expect(
-                    await page.evaluate(async () => window.Instances != undefined)
-                ).toBeTruthy()
-            })
-
-            it('2 top level instance as expected', async () => {
-                expect(
-                    await page.evaluate(async () => window.Instances.length == 2)
-                ).toBeTruthy()
-            })
-
-            it('Shortcuts created as expected. Tested with acnet and acnet.baskets_12', async () => {
-                expect(
-                    await page.evaluate(async () => window.acnet2 != undefined && window.acnet2.baskets_12 != undefined)
-                ).toBeTruthy()
-            })
-
-            it('Visual types exploded into instances as expected. Tested with acnet2.pyramidals_48 and acnet2.baskets_12', async () => {
-                expect(
-                    await page.evaluate(async () =>  window.acnet2.pyramidals_48.getChildren().length === 48 &&
-                        window.acnet2.baskets_12.getChildren().length === 12)
-                ).toBeTruthy()
-            })
-
-            it('Ref string resolved to Type as expected. Tested with referencef : //@libraries.1/@types.5', async () => {
-                expect(
-                    await page.evaluate(async () =>
-                        GEPPETTO.ModelFactory.resolve('//@libraries.1/@types.5').getId() == window.Model.getLibraries()[1].getTypes()[5].getId() &&
-                        GEPPETTO.ModelFactory.resolve('//@libraries.1/@types.5').getMetaType() == window.Model.getLibraries()[1].getTypes()[5].getMetaType()
-                    )
-                ).toBeTruthy()
-            })
-
-            it('Type in the model resolved as expected. Tested with acnet2.baskets_12[0]', async () => {
-                expect(
-                    await page.evaluate(async () =>  acnet2.baskets_12[0].getTypes().length == 1 &&
-                        acnet2.baskets_12[0].getTypes()[0].getId() ==  'bask' &&
-                        acnet2.baskets_12[0].getTypes()[0].getMetaType() == 'CompositeType')
-                ).toBeTruthy()
-            })
-
-            it('Visual groups created as expected. Tested with acnet2.baskets_12[0]', async () => {
-                expect(
-                    await page.evaluate(async () =>  acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups().length == 3 &&
-                        acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups()[0].getId() == 'Cell_Regions' &&
-                        (acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups()[1].getId() == 'Kdr_bask' ||
-                            acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups()[1].getId() == 'Kdr_bask') &&
-                        (acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups()[2].getId() == 'Na_bask' ||
-                            acnet2.baskets_12[0].getTypes()[0].getVisualType().getVisualGroups()[2].getId() == 'Na_bask'))
-                ).toBeTruthy()
-            })
-
-            it('getAllInstanceOf returning instances as expected for Type and Type path. Tested with acnet2.baskets_12[0]', async () => {
-                expect(
-                    await page.evaluate(async () => GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getType()).length == 12 &&
-                        GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getType().getPath()).length == 12 &&
-                        GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getType())[0].getId() == "baskets_12[0]" &&
-                        GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getType())[0].getMetaType() == "ArrayElementInstance")
-                ).toBeTruthy()
-            })
-
-            it('getAllInstanceOf returning instances as expected for Variable and Variable path. Tested with acnet2.baskets_12[0]', async () => {
-                expect(
-                    await page.evaluate(async () =>  GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getVariable()).length == 1 &&
-                        GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getVariable().getPath()).length == 1 &&
-                        GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getVariable())[0].getId() == "baskets_12" &&
-                        GEPPETTO.ModelFactory.getAllInstancesOf(acnet2.baskets_12[0].getVariable())[0].getMetaType() == "ArrayInstance")
-                ).toBeTruthy()
-            })
-
-            it('All potential instance paths exploded as expected', async () => {
-                expect(
-                    await page.evaluate(async () =>  GEPPETTO.ModelFactory.allPathsIndexing.length == 9741 &&
-                        GEPPETTO.ModelFactory.allPathsIndexing[0].path == 'acnet2' &&
-                        GEPPETTO.ModelFactory.allPathsIndexing[0].metaType == 'CompositeType' &&
-                        GEPPETTO.ModelFactory.allPathsIndexing[9741 - 1].path == "acnet2.SmallNet_bask_bask.GABA_syn_inh.GABA_syn_inh" &&
-                        GEPPETTO.ModelFactory.allPathsIndexing[9741 - 1].metaType == 'StateVariableType')
-                ).toBeTruthy()
-            })
-
-            it('getAllPotentialInstancesEndingWith .v returning expected paths', async () => {
-                expect(
-                    await page.evaluate(async () =>  GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v').length == 456 &&
-                        GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v')[0] == 'acnet2.pyramidals_48[0].soma_0.v' &&
-                        GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v')[333] == 'acnet2.pyramidals_48[45].basal0_6.v' &&
-                        GEPPETTO.ModelFactory.getAllPotentialInstancesEndingWith('.v')[456 - 1] == 'acnet2.baskets_12[11].dend_1.v')
-                ).toBeTruthy()
-            })
-
-            it('Instances.getInstance creates and fetches instance as expected. Tested with acnet2.baskets_12[3]', async () => {
-                expect(
-                    await page.evaluate(async () =>  window.Instances.getInstance('acnet2.baskets_12[3]').getInstancePath() == 'acnet2.baskets_12[3]')
-                ).toBeTruthy()
-            })
-
-            it('Instances.getInstance creates and fetches instance as expected. Tested with acnet2.baskets_12[3].soma_0.v', async () => {
-                expect(
-                    await page.evaluate(async () =>
-                        window.Instances.getInstance('acnet2.baskets_12[3].soma_0.v').getInstancePath() == 'acnet2.baskets_12[3].soma_0.v'
-                    )
-                ).toBeTruthy()
-            })
-
-            it('Trying to fetch something that does not exist in the model throws exception', async () => {
-                expect(
-                    await page.evaluate(async () =>  window.Instances.getInstance('acnet2.baskets_12[3].sticaxxi')==undefined)
-                ).toBeTruthy()
-            })
-        })
-
-        describe('Tests Injected Capabilities using the  Primary Auditory Cortex Network Project.', () => {
-            it('Visual capability injected to instances of visual types. Tested with acnet2.baskets_12[0]', async () => {
-                expect(
-                    await page.evaluate(async () =>  window.acnet2.baskets_12[0].hasCapability(GEPPETTO.Resources.VISUAL_CAPABILITY))
-                ).toBeTruthy()
-            })
-
-            it('Visual capability injected to types with visual types. Tested with acnet2.baskets_12[0]', async () => {
-                expect(
-                    await page.evaluate(async () =>  window.acnet2.baskets_12[0].getType().hasCapability(GEPPETTO.Resources.VISUAL_CAPABILITY))
-                ).toBeTruthy()
-            })
-
-            it('Parameter capability injected to parameter instances. Tested with Model.neuroml.network_ACnet2.temperature', async () => {
-                expect(
-                    await page.evaluate(async () =>  window.Model.neuroml.network_ACnet2.temperature.hasCapability(GEPPETTO.Resources.PARAMETER_CAPABILITY))
-                ).toBeTruthy()
-            })
-
-            it('Visual group capability injected to instances of visual types with visual groups. Tested with acnet2.pyramidals_48[0]', async () => {
-                expect(
-                    await page.evaluate(async () =>  window.acnet2.pyramidals_48[0].hasCapability(GEPPETTO.Resources.VISUAL_GROUP_CAPABILITY))
-                ).toBeTruthy()
-            })
-
-            it('Connection capability injected to variables of ConnectionType.', async () => {
-                expect(
-                    await page.evaluate(async () =>
-                        GEPPETTO.ModelFactory.getAllVariablesOfMetaType(GEPPETTO.ModelFactory.getAllTypesOfMetaType(GEPPETTO.Resources.COMPOSITE_TYPE_NODE),
-                            'ConnectionType')[0].hasCapability(GEPPETTO.Resources.CONNECTION_CAPABILITY)
-                    )
-                ).toBeTruthy()
-            })
-
-            it('Connection capability injected to instances of connection types. Tested with acnet2.pyramidals_48[0]', async () => {
-                expect(
-                    await page.evaluate(async () =>  window.acnet2.pyramidals_48[0].getConnections()[0].hasCapability(GEPPETTO.Resources.CONNECTION_CAPABILITY))
-                ).toBeTruthy()
-            })
-        })
-    })
-})
\ No newline at end of file
diff --git a/tests/jest-puppeteer/TestLiveGeppetto.js b/tests/jest-puppeteer/TestLiveGeppetto.js
deleted file mode 100644
index a9c904c..0000000
--- a/tests/jest-puppeteer/TestLiveGeppetto.js
+++ /dev/null
@@ -1,107 +0,0 @@
-const puppeteer = require('puppeteer');
-const { TimeoutError } = require('puppeteer/Errors');
-
-import { getCommandLineArg } from './cmdline.js';
-import { wait4selector, click } from './utils';
-import {
-    testPlotWidgets
-} from './functions';
-
-import * as ST from './selectors';
-
-const baseURL = getCommandLineArg('--url', 'http://live.geppetto.org');
-
-describe('Test live.geppetto.org', () => {
-    beforeAll(async () => {
-        jest.setTimeout(100000);
-
-        await page.goto(baseURL);
-    });
-
-    afterAll(async () => {
-    })
-
-
-    /**Tests Dashboard is present with all default projects**/
-    describe('Test Dashboard', () => {
-        const PROJECT_IDS = [1, 3, 4, 5, 6, 8, 9, 16, 18, 58];
-        it.each(PROJECT_IDS)('Project width id %i from core bundle are present', async id => {
-            wait4selector(page, `div[project-id="${id}"]`, { timeout: 60000})
-        })
-
-        it("Open Single Component HH Project", async () => {
-            await page.goto(baseURL + "/geppetto?load_project_from_id=1");
-        })
-    })
-
-    /**Opens Single Component HH Project using the Dashboard**/
-    describe('Open Single Component HH Project with ID 1', () => {
-
-        /*Tests the landing page of Single Component HH Project*/
-        describe('Single Component HH Project Landing Page', () => {
-            it("Spinner goes away", async () => {
-                await wait4selector(page, ST.SPINNER_SELECTOR, { hidden: true , timeout: 60000})
-            })
-
-            it.each(ST.ELEMENTS_IN_LANDING_PAGE)('%s', async (msg, selector) => {
-                await wait4selector(page, selector, { visible: true, timeout: 10000})
-            })
-        })
-
-        /*Some tests making sure some of the expected UI compoments and DOM objects are present*/
-        describe('Widgets', () => {
-            it('Right amount of graph elements for Plot1', async () => {
-                await wait4selector(page, ST.PLOT1_SELECTOR, { visible: true,timeout: 60000});
-                // watch out here (the labels in the plot appear a little after the plot)
-                await page.waitFor(5000);
-                await testPlotWidgets(page, "Plot1", 1);
-            })
-
-            it('Right amount of graph elements for Plot2', async () => {
-                await testPlotWidgets(page, "Plot2", 3);
-            })
-
-            it('Initial amount of experiments for hhcell checked.', async () => {
-                expect(
-                    await page.evaluate(async () => window.Project.getExperiments().length)
-                ).toBe(1)
-            })
-
-            it('Top level instance present.', async () => {
-                expect(
-                    await page.evaluate(async () => eval('hhcell') != null)
-                ).toBeTruthy()
-            })
-
-            it('2 top Variables as expected for hhcell', async () => {
-                expect(
-                    await page.evaluate(async () => window.Model.getVariables().map(v => v.getId()))
-                ).toEqual(expect.arrayContaining(['hhcell', 'time']))
-            })
-
-            it('2 Libraries as expected for hhcell', async () => {
-                expect(
-                    await page.evaluate(async () => window.Model.getLibraries() != undefined && window.Model.getLibraries().length == 2)
-                ).toBeTruthy()
-            })
-
-            it('1 top level instance as expected for hhcell', async () => {
-                expect(
-                    await page.evaluate(async () => window.Instances != undefined && window.Instances.length == 2 && window.Instances[0].getId() == 'hhcell')
-                ).toBeTruthy()
-            })
-
-            it('Checking that time series length is 6001 in variable for hhcell project', async () => {
-                expect(
-                    await page.evaluate(async () => eval('hhcell').hhpop[0].bioPhys1.membraneProperties.naChans.na.h.q.getTimeSeries().length == 6001)
-                ).toBeTruthy()
-            })
-
-            it('REPEATED!! Right amount of graph elements for Plot1', async () => {
-                await page.evaluate(async () => Plot1.plotData(eval('hhcell').hhpop[0].v))
-                await testPlotWidgets(page, "Plot1", 1)
-            })
-
-        })
-    })
-})
\ No newline at end of file
diff --git a/tests/jest-puppeteer/TestNeuronalProjects.js b/tests/jest-puppeteer/TestNeuronalProjects.js
deleted file mode 100644
index 2308b8c..0000000
--- a/tests/jest-puppeteer/TestNeuronalProjects.js
+++ /dev/null
@@ -1,30 +0,0 @@
-
-import {
-  testSingleComponentHHProject,
-  testACNET2Project,
-  testC302NetworkProject,
-  testCa1Project,
-  testPVDRNeuronProject,
-  testPMuscleCellProject,
-  testC302Connectome,
-} from './NeuronalTestsLogic'
-import { testDashboard } from "./functions";
-
-
-describe('Test Neuronal Projects', () => {
-  beforeAll(async () => {
-    await jestPuppeteer.resetBrowser();
-    jest.setTimeout(200000);
-  });
-
-
-  describe('Test Dashboard', () => testDashboard());
-  describe('Single Component HH Project', () => testSingleComponentHHProject());
-  describe('Acnet Project', () => testACNET2Project());
-  describe('C302 Network Project', () => testC302NetworkProject());
-  describe('Ca1 Project', () => testCa1Project());
-  describe('cElegansPVDR Project', () => testPVDRNeuronProject());
-  describe('cElegansMuscleModel Project', () => testPMuscleCellProject());
-  describe('cElegansConnectome Project', () => testC302Connectome());
-
-});
diff --git a/tests/jest-puppeteer/TestUIComponents.js b/tests/jest-puppeteer/TestUIComponents.js
deleted file mode 100644
index 73590be..0000000
--- a/tests/jest-puppeteer/TestUIComponents.js
+++ /dev/null
@@ -1,286 +0,0 @@
-const puppeteer = require('puppeteer');
-const { TimeoutError } = require('puppeteer/Errors');
-
-import { getCommandLineArg, getUrlFromProjectId } from './cmdline.js';
-import { wait4selector, click } from './utils';
-
-import * as ST from './selectors';
-
-const COLLAPSE_WIDGET_HEIGHT = 35;
-const baseURL = getCommandLineArg('--url', 'http://localhost:8080/org.geppetto.frontend');
-
-describe('Test UI Components', () => {
-  beforeAll(async () => {
-    jest.setTimeout(200000);
-    await jestPuppeteer.resetBrowser();
-    await page.goto(baseURL);
-  });
-
-  
-  describe('Test Dashboard', () => {
-    const PROJECT_IDS = [1, 3, 4, 5, 6, 8, 9, 16, 18, 58];
-    it.each(PROJECT_IDS)('Project width id %i from core bundle are present', async id => {
-      await page.waitForSelector(`div[project-id="${id}"]`);
-    })
-  })
-
-
-  describe('Test Geppetto without scope', () => {
-    it('Open the page', async () => {
-      await page.goto(getUrlFromProjectId());
-    })
-
-
-    describe('Landing page', () => {
-      it("Spinner goes away", async () => {
-        await wait4selector(page, ST.SPINNER_SELECTOR, { hidden: true })
-      })
-      
-      it.each(ST.ELEMENTS_IN_LANDING_PAGE)('%s', async (msg, selector) => {
-        await wait4selector(page, selector, { visible: true })
-      })
-       
-    }) 
-
-
-    describe('Console', () => {
-      it('The console panel is correctly visible.', async () => {
-        await click(page, ST.CONSOLE_SELECTOR)
-        await wait4selector(page, ST.DRAWER_SELECTOR, { visible: true });
-      })
-      
-      it('The console panel is correctly hidden.', async () => {
-        await click(page, ST.DRAWER_MINIMIZE_ICON_SELECTOR);
-        await wait4selector(page, ST.DRAWER_SELECTOR, { hidden: true });
-      })
-      
-      it('Console is maximized correctly.', async () => {
-        await click(page, ST.CONSOLE_SELECTOR)
-        await wait4selector(page, ST.DRAWER_SELECTOR, { visible: true });
-        await click(page, ST.DRAWER_MAXIMIZE_ICON_SELECTOR)
-        expect(
-          await page.evaluate( async selector => $(selector).height() > 250, ST.DRAWER_CONTAINER_SELECTOR)
-        ).toBeTruthy()
-      })
-      
-      it('Console output empty.', async () => {
-        await click(page, ST.DRAWER_CLOSE_ICON_SELECTOR)
-        await wait4selector(page, ST.DRAWER_SELECTOR, { hidden: true });
-        await click(page, ST.CONSOLE_SELECTOR)
-        await wait4selector(page, ST.DRAWER_CMD_INPUT_SELECTOR, { visible: true });
-        expect(
-          await page.evaluate( async selector => $(selector).find("span").length, ST.CONSOLE_OUTPUT_SELECTOR)
-        ).toBe(1)
-      })
-
-      it('Console output not empty.', async () => {
-        await page.evaluate(async () => G.debug(true))
-        await click(page, ST.PAN_HOME_BUTTON_SELECTOR)
-        await page.waitFor(50)
-        expect(
-          await page.evaluate( async selector => $(selector).find("span").length, ST.CONSOLE_OUTPUT_SELECTOR)
-        ).toBe(4)
-      })
-
-      it('G.clear command not null.', async () => {
-        expect(
-          await page.evaluate(async () => G.clear())
-        ).toBe("Console history cleared")
-      })
-
-      it('Console output not empty after G.clear.', async () => {
-        expect(
-          await page.evaluate(async selector => $(selector).find("span").length, ST.CONSOLE_OUTPUT_SELECTOR)
-        ).toBe(0)
-      })
-
-      it('Leave debug mode and hide console.', async () => {
-        await page.evaluate( async () => G.debug(false))
-        await click(page, ST.CONSOLE_SELECTOR)
-        await wait4selector(page, ST.DRAWER_SELECTOR, { hidden: true });
-      })
-    })
-
-    
-    describe('Debug mode functionality', () => {
-      it('Debug mode disabled.', async () => {
-        expect(
-          await page.evaluate( async () => G.isDebugOn())
-        ).toBeFalsy()
-      })
-
-      it('Debug mode correctly enabled.', async () => {
-        expect(
-          await page.evaluate( async () => {
-            G.debug(true);
-            return G.isDebugOn();
-          })
-        ).toBeTruthy()
-      })
-
-      it('Debug mode correctly disabled.', async () => {
-        expect(
-          await page.evaluate( async () => {
-            G.debug(false);
-            return G.isDebugOn();
-          })
-        ).toBeFalsy()
-      })
-    })
-
-
-    describe('Help window', () => {
-      it('Right amount of title headers for tutorial window', async () => {
-        await click(page, ST.HELP_BUTTON_SELECTOR);
-        await wait4selector(page, ST.HELP_MODAL_SELECTOR, { visible: true });
-        expect(
-          await page.evaluate( async selector => $(selector).find("h4").length, ST.HELP_MODAL_SELECTOR)
-        ).toBe(7)
-      })
-
-      it('Right amount of status circles for tutorial window', async () => {
-        await click(page, ST.HELP_BUTTON_SELECTOR);
-        await wait4selector(page, ST.HELP_MODAL_SELECTOR, { visible: true });
-        expect(
-          await page.evaluate( async selector => $(selector).find("div").find(".circle").length, ST.HELP_MODAL_SELECTOR)
-        ).toBe(10)
-      })
-
-      it('G.help command not null.', async () => {
-        expect(
-          await page.evaluate(async () => G.help())
-        ).not.toBeNull()
-      })
-        
-      it("I've waited for help window to go away.", async () => {
-        await page.evaluate(async selector => $(selector).find("button")[0].click(), ST.HELP_MODAL_SELECTOR)
-        await wait4selector(page, ST.HELP_MODAL_SELECTOR, { hidden: true });
-      })
-    })
-
-    // Test WIDGETS
-    describe.each(ST.WIDGET_LIST)('%s', (title, widgetType, widgetName, originalDimensions) => {
-      beforeAll(async () => {
-        await page.evaluate( async widgetType => G.addWidget(widgetType), widgetType)
-        await wait4selector(page, `#${widgetName}`, { visible: true });
-      });
-
-      it('Initial dimensions correct.', async () => {
-        expect(
-          await page.evaluate( async widgetName => eval(widgetName).getSize(), widgetName)
-        ).toEqual(originalDimensions)
-      })
-      
-
-      describe('Maximize', () => {
-        beforeAll(async () => {
-          await page.evaluate( async selector => $(selector).parent().find("a")[2].click(), `#${widgetName}`)
-        });
-          
-        it('Maximized dimensions are correct.', async () => {
-          const widgetDimensions = await page.evaluate( async widgetName => {
-            const parent = eval(widgetName).$el.parent()
-            return { width: Math.round(parent.width()), height: Math.round(parent.height()) }
-          }, widgetName)
-
-          const widgetExpectedDimensions = await page.evaluate( async () => ({ 
-            width: Math.round($(window).width()-.2),
-            height: Math.round($(window).height() - 5.2)
-          }))
-
-          expect(widgetDimensions).toEqual(widgetExpectedDimensions);
-        })
-        
-        it('Restored dimensions are correct.', async () => {
-          await page.evaluate( async selector => $(selector).parent().find("a")[2].click(), `#${widgetName}`);
-          expect(
-            await page.evaluate( async widgetName => eval(widgetName).getSize(), widgetName)
-          ).toEqual(originalDimensions)
-        })
-      })
-
-
-      describe('Minimize', () => {
-        it('Initialy not minimized.', async () => {
-          expect(
-            await page.evaluate( async selector => $(selector).find(".ui-dialog").length, ST.MINIMIZE_WIDGETS_CONTAINER_SELECTOR)
-          ).toBe(0)
-        })
-
-        it('Minimized correctly.', async () => {
-          await page.evaluate( async selector => $(selector).parent().find("a")[3].click(), `#${widgetName}`);
-          expect(
-            await page.evaluate( async selector => $(selector).find(".ui-dialog").length, ST.MINIMIZE_WIDGETS_CONTAINER_SELECTOR)
-          ).toBe(1)
-        })
-        
-        it('Restored correctly.', async () => {
-          await page.evaluate( async selector => $(selector).parent().find("a")[3].click(), `#${widgetName}`);
-          expect(
-            await page.evaluate( async selector => $(selector).find(".ui-dialog").length, ST.MINIMIZE_WIDGETS_CONTAINER_SELECTOR)
-          ).toBe(0)
-        })
-      })
-
-
-      describe('Collapse', () => {
-        it('Initialy not Collapse.', async () => {
-          expect(
-            await page.evaluate(async (widgetID, height) => $(widgetID).height() < height, `#${widgetName}`, COLLAPSE_WIDGET_HEIGHT)
-          ).toBeFalsy()
-        })
-
-        it('Collapse correctly.', async () => {
-          await page.evaluate( async selector => $(selector).parent().find("a")[0].click(), `#${widgetName}`);  
-          expect(
-            await page.evaluate(async (widgetID, height) => $(widgetID).height() < height, `#${widgetName}`, COLLAPSE_WIDGET_HEIGHT)
-          ).toBeTruthy()
-        })
-
-        it('Resotored correctly.', async () => {
-          await page.evaluate( async selector => $(selector).parent().find("a")[1].click(), `#${widgetName}`);  
-          expect(
-            await page.evaluate(async (widgetID, height) => $(widgetID).height() < height, `#${widgetName}`, COLLAPSE_WIDGET_HEIGHT)
-          ).toBeFalsy()
-        })
-      })
-
-
-      describe('Destroy', () => {
-        it("Doesn't exist anymore.", async () => {
-          await page.evaluate( async widgetName => eval(widgetName).destroy(), widgetName);
-          await wait4selector(page, `#${widgetName}`, { hidden: true });
-        })
-      })
-    })
-
-
-    describe('Units control.', () => {
-      beforeAll(async () => {
-        await page.evaluate( async () => G.addWidget(0))
-        await wait4selector(page, '#Plot1', { visible: true });
-      });
-      
-      it("'S / m2' unit.", async () => {
-        expect(
-          await page.evaluate( async () => Plot1.getUnitLabel("S / m2"))
-        ).toBe("Electric conductance over surface (S / m<sup>2</sup>)")
-      })
-
-      it("External 'S / m2' unit.", async () => {
-        expect(
-          await page.evaluate( async () => {
-            GEPPETTO.UnitsController.addUnit("S/m2","Electric conductance OVER density");
-            return Plot1.getUnitLabel("S / m2")
-          })
-        ).toBe("Electric conductance over density (S / m<sup>2</sup>)")
-      })
-
-      it("'S / m2' unit", async () => {
-        expect(
-          await page.evaluate( async () => Plot1.getUnitLabel("S/m2"))
-        ).toBe("Electric conductance over density (S/m<sup>2</sup>)")
-      })
-    })
-  })
-})
diff --git a/tests/jest-puppeteer/cmdline.js b/tests/jest-puppeteer/cmdline.js
deleted file mode 100644
index 7d0e669..0000000
--- a/tests/jest-puppeteer/cmdline.js
+++ /dev/null
@@ -1,22 +0,0 @@
-const urljoin = require('url-join');
-
-
-export const getCommandLineArg = (param, defaultValue) => {
-  let value = process.argv.find(arg => arg.startsWith(param))
-  
-  if (value) {
-    return value.replace(`${param}=`, '')
-  } else {
-    return defaultValue
-  }
-}
-
-export const baseURL = getCommandLineArg('--url', 'http://localhost:8080/org.geppetto.frontend');
-
-const getFullPath = (relativePath = 'geppetto?') => urljoin(baseURL, relativePath);
-
-export const getUrlFromProjectId = (id = undefined) => urljoin(baseURL, 'geppetto?') + (id ? `load_project_from_id=${id}` : '');
-export const getUrlFromProjectUrl = (url = undefined) => urljoin(baseURL, 'geppetto?') + (url ? `load_project_from_url=${url}` : '');
-export const getProjectUrlFromId = id => getFullPath(`geppetto?load_project_from_id=${id}`);
-
-export const getEmptySceneUrl = () => getFullPath();
diff --git a/tests/jest-puppeteer/functions.js b/tests/jest-puppeteer/functions.js
deleted file mode 100644
index 3a0ce79..0000000
--- a/tests/jest-puppeteer/functions.js
+++ /dev/null
@@ -1,273 +0,0 @@
-import * as ST from './selectors'
-import { click, wait4selector } from './utils';
-import { baseURL, getUrlFromProjectId, getUrlFromProjectURL } from "./cmdline";
-
-const zoomClicks = 50;
-const panClicks = 10;
-const rotateClicks = 20;
-export const defaultColor = [0.00392156862745098,0.6,0.9098039215686274];
-
-export const resetCameraTest = async (page, expectedCameraPosition) => {
-  await click(page, ST.PAN_HOME_BUTTON_SELECTOR);
-  await testCameraPosition(page, expectedCameraPosition);
-};
-
-
-export const resetCameraTestWithCanvasWidget = async (page, expectedCameraPosition) => {
-  await click(page, ST.PAN_HOME_BUTTON_SELECTOR);
-  await page.evaluate(async selector => {
-    $(selector).find(".position-toolbar").find(".pan-home").click();
-  }, ST.CANVAS_2_SELECTOR);
-
-  testCameraPosition(page, expectedCameraPosition);
-};
-
-
-export const testInitialControlPanelValues = async (page, values) => {
-  await wait4selector(page, ST.CONTROL_PANEL_SELECTOR, { visible: true })
-  const rows = await page.evaluate(async selector => $(selector).length, ST.STANDARD_ROW_SELECTOR);
-  expect(rows).toEqual(values);
-}
-
-
-export const removeAllPlots = async page => {
-  await page.evaluate(async selector => $(selector).remove(), ST.PLOTLY_SELECTOR);
-  await page.waitFor(1000);
-}
-
-
-export const removeAllDialogs = async page => {
-  await page.evaluate(async selector => $(selector).remove(), ST.DIALOG_SELECTOR);
-}
-
-
-export const testVisibility = async (page, variableName, buttonSelector) => {
-
-  await testMeshVisibility(page, true, variableName);
-
-  await click(page, buttonSelector);
-  
-  await testMeshVisibility(page, false, variableName);
-  
-  await click(page, buttonSelector);
-  
-  await testMeshVisibility(page, true, variableName);
-  
-}
-
-
-export const testMeshVisibility = async (page, visible,variableName) => {
-  expect(
-    await page.evaluate(async variableName => Canvas1.engine.getRealMeshesForInstancePath(variableName)[0].visible, variableName)
-  ).toBe(visible)
-
-}
-
-
-export const testCameraPosition = async (page, expectedCamPosition) => {
-  const camPosition = await page.evaluate(async () => Canvas1.engine.camera.position.toArray());
-
-  camPosition.forEach((value, index) => {
-    expect(value).toBeCloseTo(expectedCamPosition[index], 0)
-  })
-}
-
-
-export const getMeshColor = async (page, variableName, index = 0) => 
-  await page.evaluate(async (variableName, index) => 
-    Canvas1.engine.getRealMeshesForInstancePath(variableName)[index].material.color.toArray(), variableName, index)
-
-
-export const test3DMeshColor = async (page, testColor,variableName,index) => {
-  const color = await getMeshColor(page, variableName, index)
-  expect(color).toEqual(testColor);
-}
-
-
-export const test3DMeshOpacity = async (page, opacityExpected, variableName, index = 0) => {
-  expect(
-    await page.evaluate((variableName, index) => Canvas1.engine.getRealMeshesForInstancePath(variableName)[index].material.opacity, variableName, index)
-  ).toBe(opacityExpected)
-}
-
-
-export const test3DMeshColorNotEquals = async (page, testColor, variableName, index = 0) => {
-  expect(
-    await getMeshColor(page, variableName, index)
-  ).not.toEqual(testColor);
-}
-
-
-export const testSelection = async (page, variableName, selectColorVarName) => {
-  await click(page, ST.SPOT_LIGHT_BUTTON_SELECTOR);
- 
-  await wait4selector(page, ST.SPOT_LIGHT_SELECTOR, { visible: true });
-   
-  await page.focus(ST.SPOT_LIGHT_SEARCH_INPUT_SELECTOR);
-  await page.keyboard.type(variableName);
-  await page.keyboard.press(String.fromCharCode(13));
-
-  await wait4selector(page, ST.BUTTON_ONE_SELECTOR, { visible: true });
-  //
-  await click(page, ST.BUTTON_ONE_SELECTOR);
-  await page.waitFor(500);
-
-  await test3DMeshColor(page, [1, 0.8, 0], selectColorVarName, 0);
-}
-
-
-export const closeSpotlight = async page => {
-  await page.evaluate(async selector => $(selector).hide(), ST.SPOT_LIGHT_SELECTOR)
-}
-
-
-export const testSpotlight = async (page, variableName,plotName,expectButton,testSelect, selectionName, selectColorVarName) => {
-  await assertExists(page, ST.SPOT_LIGHT_BUTTON_SELECTOR);
-  await click(page, ST.SPOT_LIGHT_BUTTON_SELECTOR);
-
-  await wait4selector(page, ST.SPOT_LIGHT_DIV, { visible: true });
-
-  await page.focus(ST.SPOT_LIGHT_SEARCH_INPUT_SELECTOR);
-  await page.keyboard.type(variableName);
-  await page.keyboard.press('Enter');
-  await page.waitForSelector(ST.SPOT_LIGHT_DIV, { visible: true });
-  if (expectButton) {
-    await wait4selector(page, ST.PLOT_BUTTON_SELECTOR, { visible: true });
-    await page.click("#plot");
-    await wait4selector(page, plotName, { visible: true });
-    await page.focus(ST.SPOT_LIGHT_SEARCH_INPUT_SELECTOR);
-    await page.keyboard.press('Escape');
-
-  } else {
-    await page.waitFor(1000);
-    await wait4selector(page, ST.PLOT_BUTTON_SELECTOR, { hidden: true });
-    await wait4selector(page, ST.WATCH_BUTTON_SELECTOR, { hidden: true });
-  }
-  if (testSelect){
-    await testSelection(page, selectionName, selectColorVarName);
-  }
-}
-
-
-export const testCameraControls = async (page, expectedCameraPosition) => {
-  const scheduler = [
-    [zoomClicks, ST.ZOOM_BUTTON_SELECTOR],
-    [panClicks, ST.PAN_RIGHT_BUTTON_SELECTOR],
-    [rotateClicks, ST.ROTATE_RIGHT_BUTTON_SELECTOR]
-  ]
-  const timeout = 5000;
-  const inBtwTimeout = 20;
-
-  for (const [ repetitions, selector ] of scheduler) {
-    for (const i of Array(repetitions)) {
-      page.click(selector);
-      await page.waitFor(inBtwTimeout)
-    }
-    await page.waitFor(timeout);
-    await resetCameraTest(page, expectedCameraPosition);
-  }
-}
-
-
-export const testCameraControlsWithCanvasWidget = async (page, expectedCameraPosition) => {
-  const asyncForEach = async (array, callback) => {
-    for (let index = 0; index < array.length; index++) {
-      await callback(array[index], index, array)
-    }
-  };
-
-  const scheduler = [
-    [zoomClicks * 2, ST.ZOOM_BUTTON_SELECTOR, ST.ZOOM_BUTTON_CANVAS_2_SELECTOR],
-    [panClicks * 2, ST.PAN_RIGHT_BUTTON_SELECTOR, ST.PAN_RIGHT_BUTTON_CANVAS_2_SELECTOR],
-    [rotateClicks * 2, ST.ROTATE_RIGHT_BUTTON_SELECTOR, ST.ROTATE_RIGHT_BUTTON_CANVAS_2_SELECTOR]
-  ];
-
-  const timeout = 5000;
-  const inBtwTimeout = 20;
-
-  await asyncForEach(scheduler, async ([repetitions, firstSelector, secondSelector]) => {
-    
-    for (let i in Array(repetitions).fill(1)) {
-      page.click(firstSelector);
-      await page.waitFor(inBtwTimeout);
-      page.click(secondSelector);
-      await page.waitFor(inBtwTimeout);
-    }
-    await page.waitFor(timeout);
-    await resetCameraTest(page, expectedCameraPosition);
-  })
-
-}
-
-
-export const testVisualGroup = (page, variableName, expectedMeshes,expectedColors) => {
-  
-  Array(expectedMeshes).forEach(async (el, index) => {
-    const color = await page.evaluate( (variableName, index) => Canvas1.engine.getRealMeshesForInstancePath(variableName)[index + 1].material.color.toArray(), variableName, index)
-    test3DMeshColorNotEquals(page, color, variableName);
-    test3DMeshColor(page, expectedColors[index], variableName, index + 1);
-  })
-}
-
-
-export const testingConnectionLines = async (page, expectedLines) => {
-  expect(
-    await page.evaluate(() => Object.keys(Canvas1.engine.connectionLines).length)
-  ).toBe(expectedLines);
-}
-
-
-export const testMoviePlayerWidget = async (page, id) => {
-  await wait4selector(page, 'div[id="' + id + '"]');
-  await wait4selector(page, 'iframe[id="widget6"]');
-}
-
-
-export const testPlotWidgets = async (page, widget, expectedGElements) => {
-  await wait4selector(page, `div[id="${widget}"]`, { visible: true, timeout: 5000 }); 
-  expect(
-    await page.evaluate(async selector => $(selector)[0].getElementsByClassName("legendtoggle").length, `#${widget}`)
-  ).toBe(expectedGElements)
-}
-
-
-export const launchTest = async (projectId, projectURL, timeout) => {
-  if (projectId) {
-    await page.goto(getUrlFromProjectId(projectId));
-  } else if (projectURL){
-    await page.goto(getUrlFromProjectURL(projectURL));
-  }
-  await page.waitForSelector(ST.LOADING_SPINNER, { visible: true });
-  const pageTitle = await page.title();
-  expect(pageTitle).toEqual("geppetto");
-  await assertExists(page, ST.SIM_TOOLBAR_SELECTOR);
-  await assertExists(page, ST.CONTROLS_SELECTOR);
-  await assertExists(page, ST.FOREGROUND_TOOLBAR_SELECTOR);
-}
-
-
-export const isVisible = async (page, selector) => await page.evaluate(async selector => $(selector) !== null, selector)
-
-export const assertExists = async (page, selector) => {
-  expect(
-    await page.evaluate(async selector => $(selector) !== null, selector)
-  ).toBeTruthy();
-}
-
-export function testDashboard () {
-  beforeAll(async () => {
-    await page.goto(baseURL);
-  });
-
-  describe('Test Dashboard', () => {
-    const PROJECT_IDS = [1, 3, 4, 5, 6, 8, 9, 16, 18, 58];
-    it.each(PROJECT_IDS)('Project width id %i from core bundle is present', async id => {
-      await page.waitForSelector(`div[project-id="${id}"]`);
-    });
-
-    it('Logo', async () => {
-      await assertExists(page, ST.LOGO);
-    });
-  })
-
-}
diff --git a/tests/jest-puppeteer/persistence/TestPersistence.js b/tests/jest-puppeteer/persistence/TestPersistence.js
deleted file mode 100644
index 39c46a1..0000000
--- a/tests/jest-puppeteer/persistence/TestPersistence.js
+++ /dev/null
@@ -1,230 +0,0 @@
-import { getCommandLineArg, getUrlFromProjectUrl, getUrlFromProjectId} from './../cmdline.js';
-import { wait4selector, click } from './../utils';
-
-import { testProject, testCreateExperiment, testCloneExperiment, testDeleteExperiment, testSaveProjectProperties, testSaveExperimentProperties } from './persistence_functions';
-import * as ST from './../selectors';
-
-const baseURL = getCommandLineArg('--url', 'http://localhost:8080/org.geppetto.frontend/');
-
-const PERSISTENCE_PROJECT_1 = {
-		name : "Hodgkin-Huxley Neuron",
-		id : 1,
-		test_name : "TEST 1",
-		url : 'https://raw.githubusercontent.com/openworm/org.geppetto.samples/development/UsedInUnitTests/SingleComponentHH/project.json',
-		console_test : {input: 'hhcell.isS', expected: 'hhcell.isSelected()'},
-		canvas_widget_object_test : "hhcell",
-		parameter_test : 'Model.neuroml.pulseGen1.delay',
-		recorded_variable_test : 'hhcell.hhpop[0].v',
-		custom_handler_event : 'click',
-		test_widgets: true,
-		initial_timeout : 10 //seconds
-}
-
-const PERSISTENCE_PROJECT_2 = {
-		name : "c302_A_Pharyngeal",
-		id : 2,
-		test_name : "TEST 2",
-		url : 'https://raw.githubusercontent.com/openworm/org.geppetto.samples/development/UsedInUnitTests/pharyngeal/project.json',
-		console_test : {input: 'c302_A_Pharyngeal.isS', expected: 'c302_A_Pharyngeal.isSelected()'},
-		canvas_widget_object_test : "c302_A_Pharyngeal",
-		parameter_test : 'Model.neuroml.generic_neuron_iaf_cell.C',
-		recorded_variable_test : 'c302_A_Pharyngeal.M1[0].v',
-		test_widgets: false,
-		initial_timeout : 15 //seconds
-}
-const PERSISTENCE_PROJECT_3 =  {
-		name : "Balanced_240cells_36926conns.net - net",
-		id : 3,
-		test_name : "TEST 3",
-		url : 'https://raw.githubusercontent.com/openworm/org.geppetto.samples/development/UsedInUnitTests/balanced/project.json',
-		console_test: {input: 'Balanced_240cells_36926conns.isS', expected: 'Balanced_240cells_36926conns.isSelected()'},
-		canvas_widget_object_test : "Balanced_240cells_36926conns",
-		parameter_test : 'Model.neuroml.Balanced_240cells_36926conns.temperature',
-		recorded_variable_test : 'Balanced_240cells_36926conns.popExc[0].biophys.membraneProperties.Na_all.Na.g',
-		custom_handler_event : 'click',
-		test_widgets: true,
-		initial_timeout : 25 //seconds
-}
-
-describe('Test Persistence', () => {
-	beforeAll(async () => {
-		page.on("dialog", (dialog) => {
-			dialog.accept();
-		});
-
-	});
-
-	/**Tests Dashboard is present with all default projects**/
-	describe('Test Dashboard and Login-In', () => {
-		it("Load Dashboard", async () => {
-			await page.goto(baseURL);
-		})
-
-		it("Waiting for Geppetto Logo to appear on Landing Page", async () => {
-			await wait4selector(page, ST.GEPPETTO_LOGO, { hidden: true , timeout: 60000})
-		})
-
-		it("Loging out", async () => {
-			await page.goto(baseURL + "/logout");
-		})
-
-		it("Login in as 'guest1' user", async () => {
-			await page.goto(baseURL + "/login?username=guest1&password=guest");
-		})
-	})
-
-	describe('Test Dashboard', () => {
-		const PROJECT_IDS = [1, 2, 3, 4, 5, 6, 7, 8, 9];
-		//Tests all default projecsta are on the dashboard
-		it.each(PROJECT_IDS)('Project width id %i from persistence are present', async id => {
-			wait4selector(page, `div[project-id="${id}"]`, { timeout: 60000})
-		})
-	})
-})
-
-/**
- * Test loading first project, and then persisting it. 
- */
-describe('Test First Project', () => {
-	testProject(page,baseURL, true, PERSISTENCE_PROJECT_1);
-})
-
-/**
- * Test loading second project, and then persisting it. 
- */
-describe('Test Second Project', () => {
-	testProject(page,baseURL, false, PERSISTENCE_PROJECT_2);
-})
-
-/**
- * Test loading third project, and then persisting it. 
- */
-describe('Test Third Project', () => {
-	testProject(page,baseURL, false, PERSISTENCE_PROJECT_3);
-})
-
-/**
- * Test persistence features: creating, cloning and deleting experiments, saving project and experiment.
- */
-describe('Test Persistence Features', () => {
-	beforeAll(async () => {		
-		jest.setTimeout(100000);
-		//Load persisted project with ID 1
-		await page.goto(getUrlFromProjectId(1));
-	});
-
-	describe('Test Persistence Features on  Persisted Project with ID 1',  () => {
-		describe('Test Landing Page Components',  () => {
-			it("Spinner goes away", async () => {
-				await wait4selector(page, ST.SPINNER_SELECTOR, { hidden: true , timeout: 60000})
-			})
-
-			it.each(ST.ELEMENTS_IN_LANDING_PAGE)('%s', async (msg, selector) => {
-				await wait4selector(page, selector, { visible: true, timeout: 60000 })
-			})
-		});
-
-		describe('Test Set Experiment Active',  () => {
-			it('Set Experiment active', async () => {
-				await page.waitFor(20000);
-				await page.evaluate(async () => window.Project.getExperiments()[1].setActive())
-				await page.waitFor(1000);
-			})
-
-			it("Spinner goes away", async () => {
-				await wait4selector(page, ST.SPINNER_SELECTOR, { hidden: true , timeout: 60000})
-			})
-
-			it('New Active experiment id of loaded project checked', async () => {
-				expect(
-						await page.evaluate(async () => window.Project.getActiveExperiment().getId())
-				).toBe(2)
-			})
-
-			it('2 top Variables as expected for hhcell', async () => {
-				expect(
-						await page.evaluate(async () => window.Model.getVariables() != undefined && window.Model.getVariables().length == 2 &&
-								window.Model.getVariables()[0].getId() == 'hhcell' && window.Model.getVariables()[1].getId() == 'time')
-				).toBe(true)
-			})
-		});
-
-		//Series of calls to test creation, cloning and deleting experiments
-		describe('Test Create ,Clone and Delete Experiments',  () => {
-			testCreateExperiment(page, 4);
-			testDeleteExperiment(page, 3);
-
-			testCreateExperiment(page, 4);
-			testDeleteExperiment(page, 3);
-
-			testCloneExperiment(page, 4);
-			testDeleteExperiment(page, 3);
-
-			testCloneExperiment(page, 4);
-			testDeleteExperiment(page, 3);
-
-			testCreateExperiment(page, 4);
-			testDeleteExperiment(page, 3);
-
-			testCreateExperiment(page, 4);
-			testDeleteExperiment(page, 3);
-
-			testCloneExperiment(page, 4);
-			testDeleteExperiment(page, 3);
-		});
-
-		//Save project and experiment properties
-		describe('Test Saving Project and Experiment Properties',  () => {			
-			const experiment_properties = {"name": "Experiment Test",
-					"conversionServiceId" : "testService",
-					"simulatorId" : "testSimulator",
-					"length" : "2",
-					"timeStep" : "3",
-					"aspectInstancePath" : "hhcell(net1)"};
-
-			const project_properties = {"name": "New Project Name"};
-			it('Save Project and Experiment', async () => {
-				await page.evaluate(async (project_properties, experiment_properties) => { 
-					window.Project.getExperiments()[(window.Project.getExperiments().length-1)].saveExperimentProperties(experiment_properties);
-					window.Project.saveProjectProperties(project_properties);
-				}, project_properties, experiment_properties)
-				await page.waitFor(1000)
-			})
-
-			it("Open Persisted Project",  async () => {
-				await page.goto(getUrlFromProjectId(1));
-			})
-
-			it("Spinner goes away", async () => {
-				await wait4selector(page, ST.SPINNER_SELECTOR, { hidden: true , timeout: 60000})
-			})
-
-			it.each(ST.ELEMENTS_IN_LANDING_PAGE)('%s', async (msg, selector) => {
-				await wait4selector(page, selector, { visible: true, timeout: 60000 })
-			})
-
-			it('Initial amount of experiments for hhcell checked', async () => {
-				await page.waitFor(20000);
-				expect(
-						await page.evaluate(async () => window.Project.getExperiments().length)
-				).toBe(3)
-			})
-
-			it('Set Experiment active', async () => {
-				await page.waitFor(20000);
-				await page.evaluate(async () => window.Project.getExperiments()[1].setActive())
-				await page.waitFor(1000);
-			})
-
-			//Test project properties were saved
-			it('Test Save Project Properties', async () => {
-				testSaveProjectProperties(page, project_properties, 3)
-			})
-
-			//Test experiment got saved
-			it('Test Save Experiment Properties', async () => {
-				testSaveExperimentProperties(page, experiment_properties, 3)
-			})
-		});
-	})
-})
\ No newline at end of file
diff --git a/tests/jest-puppeteer/persistence/persistence_functions.js b/tests/jest-puppeteer/persistence/persistence_functions.js
deleted file mode 100644
index c1efbb8..0000000
--- a/tests/jest-puppeteer/persistence/persistence_functions.js
+++ /dev/null
@@ -1,434 +0,0 @@
-import * as ST from './../selectors'
-import { click, wait4selector } from './../utils';
-import { getCommandLineArg, getUrlFromProjectUrl , getUrlFromProjectId} from './../cmdline.js';
-
-import { getPersistenceProjectJSON } from './../projects';
-/**
- * Series of tests that get performed on project before it gets persisted. Widgets/components also get created so they can be saved
- * when project gets persisted, and then test their existence after persisted.
- */
-export const testProject= (page, base_url, expect_popup, project_json) => {
-	//retrieve project json using id 
-	const test_name = project_json.test_name + " : "
-	describe(project_json.test_name + " - "+ project_json.name, () => {
-		beforeAll(async () => {		
-			jest.setTimeout(60000);
-			await page.goto(getUrlFromProjectUrl(project_json.url));
-		});
-
-		//Wait for landing page to finish loading with all expected components
-		describe(test_name + 'Test Landing Page Components',  () => {
-			it("Spinner goes away", async () => {
-				await wait4selector(page, ST.SPINNER_SELECTOR, { hidden: true , timeout: 60000})
-			})
-
-			it.each(ST.ELEMENTS_IN_LANDING_PAGE)('%s', async (msg, selector) => {
-				await wait4selector(page, selector, { visible: true, timeout: 60000 })
-			})
-		});
-
-		//Test console widget exists and is able to autocomplete command
-		describe(test_name + 'Test Console Widget',  () => {
-			it('The console panel is correctly visible.', async () => {
-				await page.waitFor(project_json.initial_timeout * 1000);
-				await page.evaluate(async () => { $(".fa-terminal")[0].click();})
-				await wait4selector(page, ST.DRAWER_SELECTOR, { visible: true , timeout : 40000});
-			})
-
-			it('The console input area autocomplete works with command: ' + project_json.console_test.expected, async () => {
-				await page.waitFor(5000);
-				await testConsoleInputArea(page,project_json.console_test.input, project_json.console_test.expected)
-			})
-
-			it('The console panel is correctly hidden.', async () => {
-				await click(page, ST.DRAWER_MINIMIZE_ICON_SELECTOR);
-				await wait4selector(page, ST.DRAWER_SELECTOR, { hidden: true, timeout : 20000 });
-			})	
-		});
-
-		//Test experiment table, that it toggles and rows are there with expected initial components
-		describe(test_name + 'Test Initial Contents in Experiment Table', () => {
-			testExperimentTable(page);
-			testExperimentTableRow(page)
-			testExperimentTableRowIcons(page, false, false,  false)
-
-			it('The experiment table is correctly hidden.', async () => {
-				await click(page, ST.EXPERIMENT_TABLE_SELECTOR);	
-				await wait4selector(page, ST.EXPERIMENT_TABLE, { hidden : true});
-			})
-		})
-
-		//Tests setting recorded variables and parameters don't work through spotlight component before project is persisted
-		describe(test_name + 'Test Spotlight Component Before Project is Persisted', () => {
-			testSpotlight(page, false,  project_json.recorded_variable_test, ST.WATCH_BUTTON_SELECTOR);
-			testSpotlight(page, false, project_json.parameter_test, ST.SPOTLIGHT_PARAMETER_INPUT);
-		})
-
-		//Add widgets to project, so they can be saved as part of project when it's persisted
-		if(project_json.test_widgets){
-			describe(test_name + 'Add widgets',  () => {
-				it("Add canvas widget ", async () => {
-					await addCanvasWidget(page,project_json.canvas_widget_object_test);
-				})
-				it("Add connectivity widget ", async () => {
-					await addConnectivityWidget(page);
-				})
-				it("Add popup widget ", async () => {
-					await addPopupWidget(page,project_json.custom_handler_event);
-				})
-			})
-		}
-
-		//Test persistence button works for persisting a project
-		describe(test_name + 'Test Persistence Button Functionality',  () => {
-			it("Persistence button is present and enabled", async () => {
-				await wait4selector(page, ST.PERSIST_BUTTON, {visible : true, timeout : 100000})
-				await page.evaluate(async () => { $("#Buttonbar1").hide()})
-				await page.waitFor(1000)
-			})
-			it('Persist button is disabled, click went through', async () => {
-				await click(page, ST.PERSIST_BUTTON);
-				await wait4selector(page, 'i.fa-spin', {visible : true, timeout : 100000})
-			})
-			it('Project persisted, persist button stopped spinning', async () => {
-				await wait4selector(page, 'i.fa-spin', {hidden : true, timeout : 100000})
-			})
-		});
-
-		//Reload page using the ID of the new persisted project, and test the widgets we create/saved are there. 
-		// Also tests spotlight and experiment table, testing components that are expected to appear when project is persisted
-		describe(test_name + 'Test Persisted project',  () => {
-			it("Open Persisted Project",  async () => {
-				project_json.id = await page.evaluate(async () => Project.getId())
-				await page.goto(getUrlFromProjectId(project_json.id));
-			})
-
-			it("Spinner goes away", async () => {
-				await wait4selector(page, ST.SPINNER_SELECTOR, { hidden: true , timeout: 60000})
-			})
-
-			it.each(ST.ELEMENTS_IN_LANDING_PAGE)('%s', async (msg, selector) => {
-				await wait4selector(page, selector, { visible: true, timeout: 60000 })
-			})
-
-			//Test the widgets we created prior to persisting project were created on reload
-			if(project_json.test_widgets){
-				it('Popup1 is correctly open on reload', async () => {
-					await wait4selector(page, ST.POPUP_1_DIV_SELECTOR, {visible : true, timeout : 30000})
-				})
-				it('Popup1 custom handlers restored correctly', async () => {
-					expect(
-							await page.evaluate(async () => Popup1.customHandlers[0]['event'])
-					).toBe(project_json.custom_handler_event)
-				})
-
-				it('Connectivity1 is correctly open on reload', async () => {
-					await wait4selector(page, ST.CONNECTIVITY_1_DIV_SELECTOR, {visible : true, timeout : 30000})
-				})
-
-				it('Canvas2 is correctly open on reload', async () => {
-					await wait4selector(page, ST.CANVAS_2_SELECTOR, {visible : true, timeout : 30000})
-				})
-				it('Canvas2 has mesh set correctly', async () => {
-					expect(
-							await page.evaluate(async () => $.isEmptyObject(Canvas2.engine.meshes))
-					).toBe(false)
-				})
-			}
-		})
-
-		//Deletes persisted project using the dashboard and tests delete functionality
-		describe(test_name + 'Test delete project using dashboard',  () => {
-			it("Open Dashboard",  async () => {
-				await page.goto(base_url);
-			})
-			it('Dashboard Loaded', async () => {
-				await wait4selector(page, ST.DASHBOAD_PROJECT_PREVIEW_SELECTOR, {visible : true, timeout : 20000})
-			})
-			it('Waited for scrolldown projects to appear in dashboard', async () => {
-				await page.evaluate(async () => { $("#projects").scrollTop($("#projects")[0].scrollHeight+1000);})
-				await click(page, 'div[project-id=\"'+project_json.id+'\"]');
-				await page.waitFor(1000);
-			})
-			it('Waited for delete icon to delete project', async () => {
-				await wait4selector(page, ST.DASHBOARD_DELETE_ICON_SELECTOR, {visible : true})
-			})
-			it('Correctly deleted persisted project using the dashboard', async () => {
-				await click(page, ST.DASHBOARD_DELETE_PROJECT_SELECTOR);
-				await wait4selector(page, ST.DASHBOARD_OPEN_PROJECT, {hidden : true})
-			})
-
-		})
-	})
-};
-
-export const testCreateExperiment = async (page, expected_experiments) => {
-	it('New experiment created using persisted project', async () => {
-		await page.evaluate(async () => { window.Project.newExperiment();})
-		await page.waitFor(10000)
-
-		expect(
-				await page.evaluate(async () =>  window.Project.getExperiments().length)
-		).toBe(expected_experiments)
-	})
-};
-
-export const testCloneExperiment = async (page, expected_experiments) => {
-	it('Experiment cloned using persisted project', async () => {
-		await page.evaluate(async () =>  window.Project.getExperiments()[0].clone())
-		await page.waitFor(10000)
-		expect(
-				await page.evaluate(async () =>  window.Project.getExperiments().length)
-		).toBe(expected_experiments)
-	})
-
-	it('"Clone Experiment - Simulator Configuration duration checked', async () => {
-		expect(
-				await page.evaluate(async () =>  Project.getExperiments()[0].simulatorConfigurations["hhcell"].length ===
-					Project.getExperiments()[Project.getExperiments().length-1].simulatorConfigurations["hhcell"].length)
-		).toBe(true)
-	})
-
-	it('Clone Experiment - Simulator Configuration time step checked', async () => {
-		expect(
-				await page.evaluate(async () =>  Project.getExperiments()[0].simulatorConfigurations["hhcell"].timeStep===
-					Project.getExperiments()[Project.getExperiments().length-1].simulatorConfigurations["hhcell"].timeStep)
-		).toBe(true)
-	})
-
-	it('Clone Experiment - Simulator Configuration service id checked', async () => {
-		expect(
-				await page.evaluate(async () =>  Project.getExperiments()[0].simulatorConfigurations["hhcell"].simulatorId===
-					Project.getExperiments()[Project.getExperiments().length-1].simulatorConfigurations["hhcell"].simulatorId)
-		).toBe(true)
-	})
-};
-
-export const testDeleteExperiment = async (page, expected_experiments) => {
-	it('Experiment was deleted successfully, according to confirmation popup', async() =>{
-		await page.waitFor(5000)
-		await page.evaluate(async () => { 
-			window.Project.getExperiments()[(window.Project.getExperiments().length-1)].deleteExperiment();
-		})
-		await page.waitFor(5000)
-		await page.waitForFunction('document.querySelector(".modal-body").innerText.endsWith("was deleted successfully")');
-	})
-
-	it('Experiment was deleted, tested with command', async () => {
-		expect(
-				await page.evaluate(async () =>  window.Project.getExperiments().length)
-		).toBe(expected_experiments)
-
-		await page.evaluate(async () => document.getElementById('infomodal-btn').click())
-	})
-};
-
-export const testSaveExperimentProperties = async (page,properties, expected_experiments) => {
-	expect(
-			await page.evaluate(async () =>  window.Project.getExperiments().length)
-	).toBe(expected_experiments)
-
-	expect(
-			await page.evaluate(async () =>  window.Project.getExperiments()[(window.Project.getExperiments().length-1)].getName())
-	).toBe(properties.name)
-};
-
-export const testSaveProjectProperties = async (page, properties, expected_experiments) => {
-	expect(
-			await page.evaluate(async () =>  window.Project.getExperiments().length)
-	).toBe(expected_experiments)
-
-	expect(
-			await page.evaluate(async (expected_name) =>  window.Project.getName())
-	).toBe(properties.name)
-};
-
-//Download experiment results, but how to test it works? No solution in jest
-const testDownloadExperimentResults = async (page) => {
-	await page.evaluate(async () => { 
-		var login = GEPPETTO.UserController.isLoggedIn();
-		var writePermission = GEPPETTO.UserController.hasPermission(GEPPETTO.Resources.WRITE_PROJECT);
-		var projectPersisted = window.Project.persisted;
-		if(writePermission && projectPersisted && login){
-			window.Project.getActiveExperiment().downloadResults('hhcell', 'GEPPETTO_RECORDING');
-		}
-	})
-	await page.waitFor(1000)
-};
-
-//Download experiment model, but how to test it works? No solution in jest
-const testDownloadExperimentModel = async (page) => {
-	await page.evaluate(async () => { 
-		var login = GEPPETTO.UserController.isLoggedIn();
-		var writePermission = GEPPETTO.UserController.hasPermission(GEPPETTO.Resources.WRITE_PROJECT);
-		var projectPersisted = window.Project.persisted;
-		if(writePermission && projectPersisted && login){
-			window.Project.downloadModel('hhcell');
-		}
-	})
-	await page.waitFor(1000)
-};
-
-const testUpload2DropBoxFeature = async (page) => {
-	await page.evaluate(async () => { 
-		var login = GEPPETTO.UserController.isLoggedIn();
-		var writePermission = GEPPETTO.UserController.hasPermission(GEPPETTO.Resources.WRITE_PROJECT);
-		var projectPersisted = window.Project.persisted;
-		return writePermission && projectPersisted && login;
-	})
-	await page.waitFor(1000)
-}
-
-const testSpotlight = async (page,persisted,  variableName, checkComponent) => {
-	it('Spotlight button present', async () => {
-		await wait4selector(page, ST.SPOT_LIGHT_BUTTON_SELECTOR, { visible: true , timeout : 20000});
-	})
-
-	it('Opens and shows correct buttons.', async () => {
-		await click(page, ST.SPOT_LIGHT_BUTTON_SELECTOR);
-		await page.waitFor(1000);
-		await wait4selector(page, ST.SPOT_LIGHT_SELECTOR, { visible: true , timeout : 20000});
-	})
-
-	it('Spotlight button exists', async () => {
-		await page.focus(ST.SPOT_LIGHT_SEARCH_INPUT_SELECTOR);
-		await page.keyboard.type(variableName);
-		await page.keyboard.press(String.fromCharCode(13))
-	})
-	if(persisted){
-		if(checkComponent == ST.WATCH_BUTTON_SELECTOR){
-			it('Record variable icon correctly visible in spotlight', async () => {
-				await wait4selector(page, ST.WATCH_BUTTON_SELECTOR, { visible: true });
-			})
-		}else if(checkComponent == ST.SPOTLIGHT_PARAMETER_INPUT){
-			it('Parameter input field correctly visible in spotlight', async () => {
-				await wait4selector(page, ST.SPOTLIGHT_PARAMETER_INPUT, { visible: true });
-			})
-		}
-	}else{
-		if(checkComponent == ST.WATCH_BUTTON_SELECTOR){
-			it('Record variable icon correctly hidden in spotlight', async () => {
-				await wait4selector(page, ST.WATCH_BUTTON_SELECTOR, { hidden: true });
-			})
-		}else if(checkComponent == ST.SPOTLIGHT_PARAMETER_INPUT){
-			it('Parameter input field correctly hidden in spotlight', async () => {
-				await wait4selector(page, ST.SPOTLIGHT_PARAMETER_INPUT, { hidden: true });
-			})
-		}
-	}
-
-	it('Spotlight goes away', async () => {
-		await page.focus(ST.SPOT_LIGHT_SEARCH_INPUT_SELECTOR);
-		await page.keyboard.press("Escape")
-		await wait4selector(page, ST.SEARCH_ICON_SELECTOR, { hidden: true });;
-	})
-}
-
-const testExperimentTable = async (page) => {
-	it('The experiments table button is present.', async () => {
-		await wait4selector(page, ST.EXPERIMENT_TABLE_SELECTOR, { visible : false, timeout : 20000});
-	})
-
-	it('The expriments table is correctly visible.', async () => {
-		await click(page, ST.EXPERIMENT_TABLE_SELECTOR);	
-		await wait4selector(page, ST.EXPERIMENT_TABLE_CONTAINER, { visible : true, timeout : 20000});
-	})
-
-	it('The experiments table is correctly hidden.', async () => {
-		await click(page, ST.EXPERIMENT_TABLE_SELECTOR);	
-		await wait4selector(page, ST.EXPERIMENT_TABLE_CONTAINER, { visible : false, timeout : 20000});
-	})
-
-};
-
-const testExperimentTableRow = async (page) => {
-	it('The experiment table is correctly visible.', async () => {
-		await click(page, ST.EXPERIMENT_TABLE_SELECTOR);	
-		await wait4selector(page, ST.EXPERIMENT_TABLE_CONTAINER, { visible : true, timeout : 20000});
-	})
-
-	it('Experiment table column expanded and variables content exists', async () => {
-		await click(page, ST.EXPERIMENT_TABLE_COLUMN_1_SELECTOR);	
-		await wait4selector(page, ST.EXPERIMENT_TABLE_EXTENDED_ROW_VARS_SELECTOR, { visible : true, timeout : 20000});
-	})
-
-	it('Experiment table column expanded and parameters content exists', async () => {
-		await wait4selector(page, ST.EXPERIMENT_TABLE_EXTENDED_ROW_PARAMS_SELECTOR, { visible : true, timeout : 20000});
-	})
-};
-
-const testExperimentTableRowIcons = async (page, activeButtonVisibility, downloadResultsButtonVisibility, visible) => {	
-	async () => {
-		await click(page, ST.EXPERIMENT_TABLE_COLUMN_1_SELECTOR);	
-	}
-
-	it('Active button exists with correct visibility', async () => {
-		await wait4selector(page, ST.EXPERIMENT_TABLE_ACTIVE_ICON_SELECTOR, { visible : activeButtonVisibility, timeout : 20000});
-	})
-
-	it('Delete button exists with correct visibility', async () => {
-		await wait4selector(page, ST.EXPERIMENT_TABLE_DELETE_ICON_SELECTOR, { visible : visible, timeout : 20000});
-	})
-
-	it('Clone button exists with correct visibility', async () => {
-		await wait4selector(page, ST.EXPERIMENT_TABLE_CLONE_ICON_SELECTOR, { visible : visible, timeout : 20000});
-	})
-
-	it('Download results button exists with correct visibility', async () => {
-		await wait4selector(page, ST.EXPERIMENT_TABLE_DOWNLOAD_RESULTS_ICON_SELECTOR, { visible : downloadResultsButtonVisibility, timeout : 20000});
-	})
-
-	it('Download model button exists with correct visibility', async () => {
-		await wait4selector(page, ST.EXPERIMENT_TABLE_DOWNLOAD_MODELS_ICON_SELECTOR, { visible : true, timeout : 20000});
-	})
-}
-
-const testConsoleInputArea = async (page, input, expectedAutoComplete) => {
-	await page.evaluate(async (value, selector) => {
-		$(selector).val(value);
-		$(selector).trigger('keydown');
-	}, input, ST.DRAWER_CMD_INPUT_SELECTOR)
-
-	await page.waitFor(5000);
-	expect(await page.evaluate(async (input_area) => $(input_area).val(), ST.DRAWER_CMD_INPUT_SELECTOR)).toBe(expectedAutoComplete);
-}
-
-/**Adds canvas widget to project*/
-const addCanvasWidget = async (page, canvasObject) => {
-	expect( 
-			await page.evaluate(async (widgetCanvasObject) => {
-				var canvasObject = null;
-				if(widgetCanvasObject=="hhcell"){
-					canvasObject = hhcell;
-				}else if(widgetCanvasObject=="c302_A_Pharyngeal"){
-					canvasObject = c302_A_Pharyngeal;
-				}else if(widgetCanvasObject=="Balanced_240cells_36926conns"){
-					canvasObject = Balanced_240cells_36926conns;
-				}
-				GEPPETTO.ComponentFactory.addWidget('CANVAS', {name: '3D Canvas', id: "Canvas2"}, function () {this.setName('Widget Canvas');this.setPosition();this.display([canvasObject])});
-				return true;
-			}, canvasObject)
-	).toBe(true)
-}
-
-/**Adds connectivity widget to project */
-const addConnectivityWidget = async (page) => {
-	expect( 
-			await page.evaluate(async () => { G.addWidget(6); return true;})
-	).toBe(true)
-}
-
-/**Adds popup widget to project*/
-const addPopupWidget = async (page, customHandler) => {
-	expect(
-			await page.evaluate(async (customHandlerEvent) => { 
-				if(typeof Popup1 == "undefined"){
-					G.addWidget(1).then(w=>{w.setMessage("Test popup").addCustomNodeHandler(function(){},customHandlerEvent);}); 
-				}else{
-					Popup1.addCustomNodeHandler(function(){},customHandlerEvent); 
-				}
-
-				return true;
-			}, customHandler)
-	).toBe(true)
-}
\ No newline at end of file
diff --git a/tests/jest-puppeteer/projects.js b/tests/jest-puppeteer/projects.js
deleted file mode 100644
index dba1a54..0000000
--- a/tests/jest-puppeteer/projects.js
+++ /dev/null
@@ -1,77 +0,0 @@
-
-const CA1_PROJECT = 'CA1 Project';
-const ACNET_PROJECT = 'ACNET Project';
-const C_302_PROJECT = 'C 302 Project';
-const NWB_PROJECT = 'NWB Sample Project';
-const HH_CELL_PROJECT = 'HH Cell Project';
-const EYE_WIRE_PROJECT = 'Eye wire Project';
-const PHARYNGEAL_PROJECT = 'Pharyngeal Project';
-const C_ELEGANS_PVDR_PROJECT = 'C-Elegans PVDR Project';
-const C_ELEGANS_MUSCLE_PROJECT = 'C-Elegans Muscle Model Project';
-const C_ELEGANS_CONNECTOME_PROJECT = 'C-Elegans Connectome Project';
-const CYLINDER_PROJECT = 'https://raw.githubusercontent.com/openworm/org.geppetto.samples/development/UsedInUnitTests/cylinder/geppetto.json';
-
-export const Projects = Object.freeze({
-  HH_CELL: 1,
-  ACNET: 5,
-  C302: 6,
-  CA1: 3,
-  PVDR: 8,
-  CONNECTOME: 16,
-  PMUSCLE: 4,
-  CYLINDER: CYLINDER_PROJECT,
-  PHARYNGEAL: 58,
-  EYEWIRE: 9,
-});
-
-export const getProjectNameById = id => {
-  switch (id) {
-  case 1:
-    return HH_CELL_PROJECT;
-
-  case 3:
-    return CA1_PROJECT;
-
-  case 4:
-    return C_ELEGANS_MUSCLE_PROJECT;
-
-  case 5:
-    return ACNET_PROJECT;
-
-  case 6:
-    return C_302_PROJECT;
-
-  case 8:
-    return C_ELEGANS_PVDR_PROJECT;
-
-  case 9:
-    return EYE_WIRE_PROJECT;
-
-  case 16:
-    return C_ELEGANS_CONNECTOME_PROJECT;
-
-  case 18:
-    return NWB_PROJECT;
-
-  case 58:
-    return PHARYNGEAL_PROJECT;
-
-  
-  default:
-    return '';
-  }
-};
-
-export const getPersistenceProjectJSON = id => {
-	switch (id) {
-	case 1:
-		return PERSISTENCE_PROJECT_1;
-	case 2:
-		return PERSISTENCE_PROJECT_2;
-	case 3:
-		return PERSISTENCE_PROJECT_3;
-
-	default:
-		return '';
-	}
-};
diff --git a/tests/jest-puppeteer/selectors.js b/tests/jest-puppeteer/selectors.js
deleted file mode 100644
index d7739e0..0000000
--- a/tests/jest-puppeteer/selectors.js
+++ /dev/null
@@ -1,152 +0,0 @@
-export const SIM_TOOLBAR_SELECTOR = 'div[id="sim-toolbar"]';
-export const SIM_TOOLBAR_MESSAGE = "Geppetto loads the initial simulation controls";
-
-export const CONTROLS_SELECTOR = 'div[id="controls"]';
-export const CONTROLS_MESSAGE = 'Geppetto loads the initial camera controls';
-
-export const FOREGROUND_TOOLBAR_SELECTOR = 'div[id="foreground-toolbar"]';
-export const FOREGROUND_MESSAGE = "Geppetto loads the initial foreground controls";
-
-export const SPOT_LIGHT_SELECTOR = 'div[id="spotlight"]';
-export const SPOT_LIGHT_MESSAGE = "Spotlight is visible.";
-
-export const PLOT_BUTTON_SELECTOR = 'button#plot';
-export const PLOT_BUTTON_VISIBLE_MESSAGE = 'Plot variables button became visible correctly';
-export const PLOT_BUTTON_INVISIBLE_MESSAGE = 'Plot button correctly hidden';
-
-export const ZOOM_BUTTON_SELECTOR = 'button#zoomInBtn';
-export const PAN_RIGHT_BUTTON_SELECTOR = 'button#panRightBtn';
-export const ROTATE_RIGHT_BUTTON_SELECTOR = 'button#rotateRightBtn';
-
-export const CANVAS_2_SELECTOR = '#Canvas2_component';
-export const ZOOM_BUTTON_CANVAS_2_SELECTOR = '#Canvas2 ' + ZOOM_BUTTON_SELECTOR;
-export const PAN_RIGHT_BUTTON_CANVAS_2_SELECTOR = '#Canvas2 ' + PAN_RIGHT_BUTTON_SELECTOR;
-export const ROTATE_RIGHT_BUTTON_CANVAS_2_SELECTOR = '#Canvas2 ' + ROTATE_RIGHT_BUTTON_SELECTOR;
-
-export const WATCH_BUTTON_SELECTOR = 'button#watch';
-export const WATCH_BUTTON_VISIBLE_MESSAGE = 'Watch button correctly hidden';
-
-export const PAN_HOME_BUTTON_SELECTOR = '#panHomeBtn';
-export const SPOT_LIGHT_BUTTON_SELECTOR = '#spotlightBtn';
-export const SPOT_LIGHT_SEARCH_INPUT_SELECTOR = 'input#typeahead';
-export const SPOT_LIGHT_DIV = 'div#spotlight';
-
-export const CONTROL_PANEL_SELECTOR = 'div#controlpanel';
-export const CONTROL_PANEL_MESSAGE = "The control panel is correctly open.";
-export const CONTROL_PANEL_BUTTON = '#controlPanelBtn';
-export const CONTROL_PANEL_CONTAINER_SELECTOR = '#controlpanel';
-
-export const SEARCH_ICON_SELECTOR = 'i.fa.search';
-export const SEARCH_ICON_MESSAGE = 'Attempting to open spotlight';
-
-
-export const CONSOLE_SELECTOR = 'div.fa.fa-terminal';
-export const CONSOLE_OUTPUT_SELECTOR = '#undefined_console';
-
-export const DRAWER_SELECTOR = 'div[class*="consoleContainer"]';
-export const DRAWER_MINIMIZE_ICON_SELECTOR = '.minIcons';
-export const DRAWER_MAXIMIZE_ICON_SELECTOR = '.maxIcons';
-export const DRAWER_CLOSE_ICON_SELECTOR = '.closeIcons';
-export const DRAWER_CONTAINER_SELECTOR = '.drawer,.react-draggable';
-export const DRAWER_CMD_INPUT_SELECTOR = '#commandInputArea';
-export const TABBER_ANCHOR = 'span[class*="tabber"]'
-export const SELECTED_TAB = ".selectedTab"
-
-export const HELP_BUTTON_SELECTOR = '#genericHelpBtn';
-export const HELP_MODAL_SELECTOR = '#help-modal';
-
-export const MINIMIZE_WIDGETS_CONTAINER_SELECTOR = '#dialog-extend-fixed-container';
-
-export const STANDARD_ROW_SELECTOR = '.standard-row';
-
-export const PLOTLY_SELECTOR = 'div.js-plotly-plot';
-export const DIALOG_SELECTOR = 'div.dialog';
-
-export const BUTTON_ONE_SELECTOR = 'button#buttonOne';
-
-export const POPUP = ['Popups' , 1, 'Popup1', { width: 490, height: 394 }];
-export const PLOT = ['Plots' , 0, 'Plot1', { width: 350, height: 300 }];
-export const TREE = ['Trees' , 3, "TreeVisualiserDAT1", { width: 350, height: 260 }];
-export const VAR_LIST = ['Variables', 5, "VarVis1", { width: 350, height: 120 }];
-
-export const WIDGET_LIST = [ POPUP, PLOT, TREE, VAR_LIST ];
-
-export const HHCELL_SELECTOR = 'hhcell.hhpop[0]';
-export const HHCELL_V_SELECTOR = 'hhcell.hhpop[0].v';
-export const HHCELL_CONTROL_PANEL_BUTTON_SELECTOR = '#hhcell_hhpop_0__visibility_ctrlPanel_btn';
-export const HHCELL_V_CONTROL_PANEL_BUTTON_SELECTOR = 'button[id="hhcell_hhpop_0__v_plot_ctrlPanel_btn"]';
-
-export const ACNET2_SELECTOR = 'acnet2.pyramidals_48[0]';
-export const ACNET2_BASKET_SELECTOR0 = 'acnet2.baskets_12[0]';
-export const ACNET2_BASKET_SELECTOR1 = 'acnet2.baskets_12[1]';
-export const ACNET2_BASKET_SELECTOR4 = 'acnet2.baskets_12[4]';
-export const ACNET2_BASKET_SELECTOR5 = 'acnet2.baskets_12[5]';
-export const ACNET2_V1_SELECTOR = 'acnet2.pyramidals_48[1].soma_0.v';
-export const ACNET2_gDensity_SELECTOR = 'acnet2.pyramidals_48[0].biophys.membraneProperties.Ca_pyr_soma_group.gDensity';
-export const ACNET2_CONTROL_PANEL_BUTTON_SELECTOR = "acnet2_pyramidals_48_0__visibility_ctrlPanel_btn";
-export const ACNET2_V_CONTROL_PANEL_BUTTON_SELECTOR = 'acnet2_pyramidals_48_0__soma_0_v_plot_ctrlPanel_btn';
-export const ACNET2_V_CONTROL_PANEL_BUTTON = `button[id="${ACNET2_V_CONTROL_PANEL_BUTTON_SELECTOR}"]`;
-
-export const C302_SELECTOR = 'c302.ADAL[0]';
-export const C302_V_CONTROL_PANEL_BUTTON_SELECTOR = 'button[id="c302_ADAL_0__v_plot_ctrlPanel_btn"]';
-export const C302_V_SELECTOR = 'c302.ADAL[0].v';
-
-export const CA1_V_SELECTOR = 'ca1.CA1_CG[0].Seg0_apical_dendrite_22_1158.v';
-
-
-export const STATE_VARIABLE_FILTER_BUTTON_SELECTOR = '#stateVariablesFilterBtn';
-
-export const PROJECT_FILTER_BUTTON_SELECTOR = '#anyProjectFilterBtn';
-
-export const PLOT1_SELECTOR = 'div[id="Plot1"]';
-export const PLOT2_SELECTOR = 'div[id="Plot2"]';
-
-export const TUTORIAL_BUTTON_SELECTOR = 'button#tutorialBtn';
-
-export const CANVAS_2_DIV_SELECTOR = 'div#Canvas2';
-export const PLOT_1_DIV_SELECTOR = 'div#Plot1';
-export const POPUP_1_DIV_SELECTOR = 'div#Popup1';
-export const POPUP_2_DIV_SELECTOR = 'div#Popup2';
-export const POPUP_1_SELECTOR = '#Popup1';
-export const LOGO = 'div#logo';
-
-export const TUTORIAL_1_DIV_SELECTOR = 'div#Tutorial1';
-
-export const LOADING_SPINNER = 'div[id="loading-spinner"]';
-
-export const ELEMENTS_IN_LANDING_PAGE = [
-  [ SIM_TOOLBAR_MESSAGE, SIM_TOOLBAR_SELECTOR ],
-  [ CONTROLS_MESSAGE, CONTROLS_SELECTOR],
-  [ FOREGROUND_MESSAGE, FOREGROUND_TOOLBAR_SELECTOR]
-];
-
-export const GEPPETTO_LOGO = 'div#logo';
-	
-export const EXPERIMENT_TABLE_CONTAINER = 'div#experimentsOutput';
-export const EXPERIMENT_TABLE_SELECTOR = 'div.fa.fa-flask';
-export const EXPERIMENT_TABLE_COLUMN_1_SELECTOR = 'tr.experimentsTableColumn:nth-child(1)';
-export const EXPERIMENT_TABLE_EXTENDED_ROW_VARS_SELECTOR = 'td[name=variables]'
-export const EXPERIMENT_TABLE_EXTENDED_ROW_PARAMS_SELECTOR = 'td[name=parameters]'
-export const EXPERIMENT_TABLE_ACTIVE_ICON_SELECTOR = 'a.activeIcon'
-export const EXPERIMENT_TABLE_DOWNLOAD_RESULTS_ICON_SELECTOR = 'a.downloadResultsIcon'
-export const EXPERIMENT_TABLE_DOWNLOAD_MODELS_ICON_SELECTOR = 'a.downloadModelsIcon'
-export const EXPERIMENT_TABLE_CLONE_ICON_SELECTOR = 'a.cloneIcon'
-export const EXPERIMENT_TABLE_DELETE_ICON_SELECTOR = 'a.deleteIcon'
-
-	
-export const PERSIST_BUTTON = 'button.btn.SaveButton';
-export const PERSIST_BUTTON_DISABLED = 'button.btn.SaveButton[disabled]';
-export const PERSIST_BUTTON_ACTIVE = 'button.btn.SaveButton > i.fa-spin'
-	
-export const SPOTLIGHT_PARAMETER_INPUT = 'input.spotlight-input'
-
-export const CONNECTIVITY_1_DIV_SELECTOR = 'div[id="Connectivity1"]'
-	
-export const DASHBOAD_PROJECT_PREVIEW_SELECTOR = 'div.project-preview'
-export const DASHBOARD_DELETE_PROJECT_SELECTOR = 'i.fa.fa-trash-o'
-export const DASHBOARD_DELETE_ICON_SELECTOR = 'i.fa-trash-o'
-export const DASHBOARD_OPEN_PROJECT = 'i.fa-folder-open'
-	
-export const DIALOG_MODAL_SELECTOR = '#infomodal'
-export const DIALOG_MODAL_BUTTON_SELECTOR = '#infomodal-btn'
-export const DIALOG_MODAL_HEADER = 'div#infomodal-header'
diff --git a/tests/jest-puppeteer/utils.js b/tests/jest-puppeteer/utils.js
deleted file mode 100644
index 2b5d755..0000000
--- a/tests/jest-puppeteer/utils.js
+++ /dev/null
@@ -1,34 +0,0 @@
-const { TimeoutError } = require('puppeteer/Errors');
-
-
-export const wait4selector = async (page, selector, settings = {}) => {
-  let success = undefined;
-  const options = { timeout: 1000, ...settings }
-  try {
-    await page.waitForSelector(selector, options);
-    success = true
-  } catch (error){
-    let behaviour = "to exists."
-    if (options.visible || options.hidden) {
-      behaviour = options.visible ? "to be visible." : "to disappear."
-      //console.log(`ERROR: timeout waiting for selector   --->   ${selector}    ${behaviour}`)
-    }
-
-  }
-  expect(success).toBeDefined()
-}
-
-
-export const click = async (page, selector) => {
-  await wait4selector(page, selector, { visible: true });
-  let success = undefined;
-  try {
-    await page.click(selector);
-    success = true
-  } catch (error){
-    // console.log(`ERROR clicking on selector   --->   ${selector} failed.`)
-  }
-  expect(success).toBeDefined()
-}
-
-
diff --git a/tests/netpyne-tests.js b/tests/netpyne-tests.js
index ccab217..0c9cbeb 100644
--- a/tests/netpyne-tests.js
+++ b/tests/netpyne-tests.js
@@ -27,7 +27,7 @@ casper.test.begin('NetPyNE projects tests', function suite (test) {
   
   /*
    * UNCOMMENT OUT to get the javascript logs (console.log). Particularly useful for debugginf purpose
-   * casper.on('remote.message', function(message) { 
+   * casper.on('remote.message', function (message) { 
    *   this.echo('remote message caught: ' + message);
    * });
    */
@@ -316,7 +316,7 @@ function testPopParamsFields (test) {
   });
 }
 /**
- ******************************************************************************
+ * *****************************************************************************
  *                                 cellParams                                  *
  *****************************************************************************
  */
@@ -513,7 +513,7 @@ function testStimSourceFields (test) {
   });
 }
 /**
- ******************************************************************************
+ * *****************************************************************************
  *                              stimTargetParams                               *
  *****************************************************************************
  */
@@ -560,7 +560,7 @@ function testStimTargetFields (test) {
   });
 }
 /**
- ******************************************************************************
+ * *****************************************************************************
  *                                  simConfig                                  *
  *****************************************************************************
  */
@@ -576,14 +576,14 @@ function testSimConfigFields (test) {
   })
 }
 /**
- ******************************************************************************
+ * *****************************************************************************
  *                               load network                                  *
  *****************************************************************************
  */
 function testLoadNetwork (test) {
   /*
-   * casper.then(function() {
-   *   this.reload(function() {
+   * casper.then(function () {
+   *   this.reload(function () {
    *     this.echo("reloading webpage", "INFO")
    *   })
    * })
@@ -607,7 +607,7 @@ function testLoadNetwork (test) {
   });
 }
 /**
- ******************************************************************************
+ * *****************************************************************************
  *                            explore network                                  *
  *****************************************************************************
  */
@@ -664,7 +664,7 @@ function testExploreNetwork (test) {
   casper.thenClick('#ControlPanelButton');
 }
 /**
- ******************************************************************************
+ * *****************************************************************************
  *                           simulate network                                  *
  *****************************************************************************
  */
diff --git a/tests/popParamsTest.js b/tests/popParamsTest.js
index d7984d6..670c7d3 100644
--- a/tests/popParamsTest.js
+++ b/tests/popParamsTest.js
@@ -66,7 +66,7 @@ function checkPopParamsValues (casper, test, toolbox, ruleName, empty = false) {
 // ----------------------------------------------------------------------------//
 function populatePopDimension (casper, test, toolbox) {
   casper.then(function () {
-    toolbox.click(this, "popParamsDimensionsSelect", "div"); // click dimension SelectList
+    toolbox.click(this, "popParamsDimensionsSelect", "input"); // click dimension SelectList
   })
   casper.then(function () { // check all menuItems exist
     toolbox.assertExist(this, test, "popParamSnumCells", "span");
diff --git a/travis-install.sh b/travis-install.sh
deleted file mode 100755
index 9375d30..0000000
--- a/travis-install.sh
+++ /dev/null
@@ -1,58 +0,0 @@
-#!/bin/bash
-
-export main_repo_branch=$TRAVIS_BRANCH
-if [[ ${main_repo_branch} != "master" && ${main_repo_branch} != "development" ]]; then main_repo_branch=development ; fi
-
-git clone https://github.com/openworm/org.geppetto.model.git -b $main_repo_branch
-
-if [ $? -eq 0 ]
-then
-  echo "Successfully cloned org.geppetto.model, branch: "
-  echo $main_repo_branch
-else
-  echo "Failed to clone org.geppetto.model, branch: "
-  echo $main_repo_branch
-  echo "... it probably doesn't exist"
-  echo "Cloning master branch instead"
-  git clone https://github.com/openworm/org.geppetto.model.git -b master
-fi
-
-cd org.geppetto.model
-mvn install
-cd ..
-
-git clone https://github.com/openworm/org.geppetto.core.git -b $main_repo_branch
-
-if [ $? -eq 0 ]
-then
-  echo "Successfully cloned org.geppetto.core, branch: "
-  echo $main_repo_branch
-else
-  echo "Failed to clone org.geppetto.core, branch: "
-  echo $main_repo_branch
-  echo "... it probably doesn't exist"
-  echo "Cloning master branch instead"
-  git clone https://github.com/openworm/org.geppetto.core.git -b master
-fi
-
-cd org.geppetto.core
-mvn install
-cd ..
-
-git clone https://github.com/openworm/org.geppetto.simulation.git -b $main_repo_branch
-
-if [ $? -eq 0 ]
-then
-  echo "Successfully cloned org.geppetto.simulation, branch: "
-  echo $main_repo_branch
-else
-  echo "Failed to clone org.geppetto.simulation, branch: "
-  echo $main_repo_branch
-  echo "... it probably doesn't exist"
-  echo "Cloning master branch instead"
-  git clone https://github.com/openworm/org.geppetto.simulation.git -b master
-fi
-
-cd org.geppetto.simulation
-mvn install
-cd ..
diff --git a/tsconfig.json b/tsconfig.json
deleted file mode 100755
index d0ca466..0000000
--- a/tsconfig.json
+++ /dev/null
@@ -1,20 +0,0 @@
-{
-    "compilerOptions": {
-        "outDir": "./dist/",
-        "sourceMap": true,
-        "noImplicitAny": true,
-        "module": "commonjs",
-        "target": "es6",
-        "stripInternal":true,
-        "alwaysStrict":true,
-        "forceConsistentCasingInFileNames": true,
-        "noImplicitReturns": true,
-        "strict": true,
-        "noUnusedLocals": true,
-        "jsx": "react",
-        "types": []
-      },
-      "include": [
-        "./node_modules/@geppettoengine/geppetto-client/js/components/interface/flexLayout2/src/**/*", "./@geppettoengine/geppetto-client/js/components/interface/flexLayout2/examples/demo/*"
-        ]
-}
diff --git a/webpack.config.dev.js b/webpack.config.dev.js
deleted file mode 100644
index cb3c7c8..0000000
--- a/webpack.config.dev.js
+++ /dev/null
@@ -1,23 +0,0 @@
-var webpackBaseConfig = require('./webpack.config.js');
-var extended = webpackBaseConfig();
-extended.devServer = {
-  progress : true,
-  port : 8081,
-  inline : true,
-
-  proxy : [ {
-    path : '/',
-    target : 'http://localhost:8080/'
-  }, {
-    path : '/geppetto',
-    target : 'http://localhost:8080/org.geppetto.frontend'
-  }, {
-    path : '/org.geppetto.frontend',
-    target : 'ws://localhost:8080',
-    ws : true
-  }, ],
-};
-
-extended.devtool = 'source-map';
-
-module.exports = extended;
diff --git a/webpack.config.js b/webpack.config.js
deleted file mode 100644
index c5f1b79..0000000
--- a/webpack.config.js
+++ /dev/null
@@ -1,196 +0,0 @@
-var path = require('path');
-var webpack = require('webpack');
-var HtmlWebpackPlugin = require('html-webpack-plugin');
-var CopyWebpackPlugin = require('copy-webpack-plugin');
-var MiniCssExtractPlugin = require("mini-css-extract-plugin");
-/*
- *var BundleAnalyzerPlugin = require('webpack-bundle-analyzer').BundleAnalyzerPlugin;
- * <%=htmlWebpackPlugin.options.GEPPETTO_CONFIGURATION._webapp_folder%>
- */
-var geppettoConfig;
-try {
-  geppettoConfig = require('./GeppettoConfiguration.json');
-  console.log('\nLoaded Geppetto config from file');
-} catch (e) {
-  // Failed to load config file
-  console.error('\nFailed to load Geppetto Configuration')
-}
-var geppetto_client_path = 'node_modules/@geppettoengine/geppetto-client'
-
-var publicPath = path.join("/", geppettoConfig.contextPath, "geppetto/build/");
-console.log("\nThe public path (used by the main bundle when including split bundles) is: " + publicPath);
-
-var isProduction = process.argv.indexOf('-p') >= 0;
-console.log("\n Building for a " + ((isProduction) ? "production" : "development") + " environment")
-
-// These lines needed to revert direction of slashes in URL/path for CSS Themes in Windows machines
-var isWin = process.platform === "win32";
-console.log("\n Building in Windows Machine : ", isWin)
-var cssThemesPath = path.resolve(__dirname, geppettoConfig.themes)
-if ( isWin ) {
-  cssThemesPath = cssThemesPath.replace(/\\/g, "/"); 
-}
-
-const availableExtensions = [
-  { from: path.resolve(__dirname, geppetto_client_path, "static/*"), to: 'static', flatten: true },
-];
-
-module.exports = function (env){
-  // geppettoConfig._webapp_folder
-  if (env != undefined){
-    console.log(env);
-    if (env.contextPath){
-      geppettoConfig.contextPath = env.contextPath;
-    }
-    if (env.useSsl){
-      geppettoConfig.useSsl = JSON.parse(env.useSsl);
-    }
-    if (env.noTest){
-      geppettoConfig.noTest = JSON.parse(env.noTest);
-    }
-    if (env.embedded){
-      geppettoConfig.embedded = JSON.parse(env.embedded);
-    }
-    if (env.embedderURL){
-      geppettoConfig.embedderURL = env.embedderURL;
-    }
-  }
-
-  console.log('Geppetto configuration \n');
-  console.log(JSON.stringify(geppettoConfig, null, 2), '\n');
-  
-  var entries = {
-    main: path.resolve(__dirname, "Main.js"),
-    admin: path.resolve(__dirname, geppetto_client_path, "js/pages/admin/admin.js"),
-  };
-
-  console.log("\nThe Webpack entries are:");
-  console.log(entries);
-  
-  return {
-    entry: entries,
-    
-    optimization: {
-      splitChunks: {
-        cacheGroups: {
-          commons: {
-            name: 'common',                   
-            minChunks: 2, // Minimum # of chunks which need to contain a module before it's moved into the commons chunk.
-            chunks: 'initial', // initial, async or all
-            reuseExistingChunk: true, // use existing chunk if available instead of creating new one
-            enforce: true // form this chunk irrespective of the size of the chunk
-          }
-        }
-      }
-    },
-      
-    output: {
-      path: path.resolve(__dirname, 'build'),
-      filename: '[name].bundle.js',
-      publicPath: publicPath
-    },
-    plugins: [
-      /*
-       * new BundleAnalyzerPlugin({
-       *     analyzerMode: 'static'
-       * }),
-       */
-      new CopyWebpackPlugin(availableExtensions),
-      new HtmlWebpackPlugin({
-        filename: 'geppetto.vm',
-        template: path.resolve(__dirname, geppetto_client_path, 'js/pages/geppetto/geppetto.ejs'),
-        GEPPETTO_CONFIGURATION: geppettoConfig,
-        /*
-         * chunks: ['main'] Not specifying the chunk since its not possible
-         * yet (need to go to Webpack2) to specify UTF-8 as charset without
-         * which we have errors
-         */
-        chunks: []
-      }),
-      new HtmlWebpackPlugin({
-        filename: 'admin.vm',
-        template: path.resolve(__dirname, geppetto_client_path, 'js/pages/admin/admin.ejs'),
-        GEPPETTO_CONFIGURATION: geppettoConfig,
-        /*
-         * chunks: ['admin'] Not specifying the chunk since its not possible
-         * yet (need to go to Webpack2) to specify UTF-8 as charset without
-         * which we have errors
-         */
-        chunks: []
-      }),
-      new HtmlWebpackPlugin({
-        filename: 'dashboard.vm',
-        template: path.resolve(__dirname, geppetto_client_path, 'js/pages/dashboard/dashboard.ejs'),
-        GEPPETTO_CONFIGURATION: geppettoConfig,
-        chunks: []
-      }),
-      new HtmlWebpackPlugin({
-        filename: '../WEB-INF/web.xml',
-        template: path.resolve(__dirname, 'WEB-INF/web.ejs'),
-        GEPPETTO_CONFIGURATION: geppettoConfig,
-        chunks: []
-      }),
-      new webpack.DefinePlugin({ 'process.env': { 'NODE_ENV': JSON.stringify(isProduction ? 'production' : 'development'), } }),
-      new MiniCssExtractPlugin({ filename: '[name].css' })
-    ],
-      
-    resolve: {
-      alias: {
-        root: path.resolve(__dirname),
-        'geppetto-client': path.resolve(__dirname, geppetto_client_path),
-        geppetto: path.resolve(__dirname, geppetto_client_path, 'js/pages/geppetto/GEPPETTO.js'),
-        'geppetto-client-initialization': path.resolve(__dirname, geppetto_client_path, 'js/pages/geppetto/main'),
-        handlebars: 'handlebars/dist/handlebars.js'
-      },
-      extensions: ['*', '.js', '.json', '.ts', '.tsx', '.jsx'],
-    },
-  
-    module: {
-      rules: [
-        {
-          test: /\.(js|jsx)$/,
-          exclude: [/ami.min.js/, /node_modules\/(?!(@geppettoengine\/geppetto-client)\/).*/], 
-          loader: 'babel-loader',
-          query: { presets: [['@babel/preset-env', { "modules": false }], '@babel/preset-react'] }
-        },
-        // All files with a '.ts' or '.tsx' extension will be handled by 'awesome-typescript-loader'.
-        {
-          test: /\.tsx?$/,
-          loader: "awesome-typescript-loader"
-        },
-        {
-          test: /Dockerfile/,
-          loader: 'ignore-loader'
-        },
-        {
-          test: /\.(py|jpeg|svg|gif|css|jpg|md|hbs|dcm|gz|xmi|dzi|sh|obj|yml|nii)$/,
-          loader: 'ignore-loader'
-        },
-        {
-          test: /\.(png|eot|ttf|woff|woff2|svg)(\?[a-z0-9=.]+)?$/,
-          loader: 'url-loader?limit=100000'
-        },
-        {
-          test: /\.css$/,
-          use: [
-            { loader: MiniCssExtractPlugin.loader },
-            { loader: "css-loader" }
-          ]
-        },
-        {
-          test: /\.less$/,
-          loader: 'style-loader!css-loader!less-loader?{"modifyVars":{"url":"\'' + cssThemesPath + '\'"}}'
-        },
-        {
-          test: /\.html$/,
-          loader: 'raw-loader'
-        }
-      ]
-    },
-    node: {
-      fs: 'empty',
-      child_process: 'empty',
-      module: 'empty'
-    }
-  }
-};