info.md

Broad Institute's Single-Cell RNA-Seq Data Set Bio-IT World Hackathon info

Onboarding

• join the #singlecell slack channel at bioit-fairhack2019.slack.com
• get added to this github repo (share your github username in the #singlecell Slack channel)
• if needed, get added to the dockerhub repo
• if needed, set up a Terra account with free credits (through FireCloud at this time, see below)

How to register with FireCloud (with a gmail account; for non-gmail, see below):

https://gatkforums.broadinstitute.org/firecloud/discussion/6816/howto-register-get-an-account-to-use-firecloud

After registering with FireCloud, obtain free credits. Visit https://app.terra.bio/, there should be a banner to apply free credits to your account.

Note: Billing account assignments are permanent and cannot be changed. Workspaces and data in a workspace funded by the free Terra credits billing account cannot be transferred to another billing project at a later time.

How register with FireCloud using an existing, non-gmail account:

https://software.broadinstitute.org/firecloud/documentation/article?id=9846

How to set up a study in Single Cell Portal

https://github.com/broadinstitute/single_cell_portal/wiki/Study-Creation

Link to create a free Github account

https://github.com/join?plan=free&source=pricing-card-free

Useful links

Single Cell Portal study for hackathon: To be created by CompBio team
Terra workspace for hackathon: To be created by CompBio team
Slack channel for hackathon #singlecell: https://bioit-fairhack2019.slack.com/messages/CHPQENTFG
DockerHub repo: https://cloud.docker.com/u/bioithackathon/repository/docker/bioithackathon/infercnv
Github repo: https://github.com/NCBI-Hackathons/The-Broad-Institute-Single-Cell-RNA-Seq-Data-Set
FairShare entry: https://fairshake.cloud/project/73/