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add pdf file for lucidchart
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.gitignore

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.nfs*
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Rcheck.txt
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*.pdf
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tests/testthat/otherData/
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README.md

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[![Docker Image Version](https://img.shields.io/docker/v/nciccbr/scworkflow?label=docker)](https://hub.docker.com/r/nciccbr/scworkflow)
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<img src="https://raw.githubusercontent.com/NIDAP-Community/SCWorkflow/GalaxyCLI/vignettes/SCWorkflow.png">
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[![](https://raw.githubusercontent.com/NIDAP-Community/SCWorkflow/GalaxyCLI/vignettes/SCWorkflow.png)](https://raw.githubusercontent.com/NIDAP-Community/SCWorkflow/GalaxyCLI/vignettes/SCWorkflow.pdf)
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The Single Cell Workflow streamlines the analysis of multimodal Single Cell RNA-Seq data produced from 10x Genomics. It can be run in a docker container, and for biologists, in user-friendly web-based interactive notebooks (NIDAP, Palantir Foundry). Much of it is based on the Seurat workflow in Bioconductor, and supports CITE-Seq data. It incorporates a cell identification step (ModScore) that utilizes module scores obtained from Seurat and also includes Harmony for batch correction.
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vignettes/SCWorkflow.pdf

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