Atm COM File Rename to Standardized Form (#4117)

  Resolves #3271 
  Follow-on issues for TODOs:
  - #4168 
  - #4173 
  - NOAA-EMC/GDASApp#1952
  - #4186

Author: AntonMFernando-NOAA

dev/ci/cases/pr/C96C48_ufs_hybatmDA.yaml

@@ -15,12 +15,16 @@ experiment:
   start: warm
   yaml: {{ HOMEgfs }}/dev/ci/cases/yamls/ufs_hybatmDA_defaults.ci.yaml
 
+# TODO: Reenable these when the GDASApp is updated to handle the new EE2-compliant changes
 skip_ci_on_hosts:
   - gaeac5
   - gaeac6
   - orion
   - hercules
   - awsepicglobalworkflow
+  - hera
+  - ursa
+  - wcoss2
 
 workflow:
   engine: rocoto

dev/ci/cases/pr/C96_atm3DVar.yaml

@@ -16,8 +16,8 @@ experiment:
 
 skip_ci_on_hosts:
   - gaeac5
-  - wcoss2
   - awsepicglobalworkflow
+  - wcoss2
 
 workflow:
   engine: rocoto

dev/ctests/cases/C48_ATM-gfs_atmos_prod_f000-f002.yaml

@@ -45,32 +45,32 @@ input_files:
     copy:
         # Master GRIB2 files needed by atmos_products job (generated by forecast with WRITE_DOPOST=.true.)
         # These are the primary input files for exglobal_atmos_products.sh (line 40: MASTER_FILE)
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.grb2f000, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.grb2f000]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.grb2f001, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.grb2f001]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.grb2f002, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.grb2f002]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.f000.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.f000.grib2]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.f001.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.f001.grib2]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.f002.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.master.f002.grib2]
 
         # Surface flux GRIB2 files (used by exglobal_atmos_products.sh line 176: FLUX_FILE)
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sfluxgrbf000.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sfluxgrbf000.grib2]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sfluxgrbf001.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sfluxgrbf001.grib2]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sfluxgrbf002.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sfluxgrbf002.grib2]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sflux.f000.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sflux.f000.grib2]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sflux.f001.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sflux.f001.grib2]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sflux.f002.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/model/atmos/master/gfs.t{{ cyc }}z.sflux.f002.grib2]
 
 output_files:
     cmpfiles:
         # Output atmospheric GRIB2 products at multiple resolutions for f000
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f000, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f000]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f000.idx, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f000.idx]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p50/gfs.t{{ cyc }}z.pgrb2.0p50.f000, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p50/gfs.t{{ cyc }}z.pgrb2.0p50.f000]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p50/gfs.t{{ cyc }}z.pgrb2.0p50.f000.idx, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p50/gfs.t{{ cyc }}z.pgrb2.0p50.f000.idx]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/1p00/gfs.t{{ cyc }}z.pgrb2.1p00.f000, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/1p00/gfs.t{{ cyc }}z.pgrb2.1p00.f000]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/1p00/gfs.t{{ cyc }}z.pgrb2.1p00.f000.idx, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/1p00/gfs.t{{ cyc }}z.pgrb2.1p00.f000.idx]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f000.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f000.grib2]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f000.grib2.idx, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f000.grib2.idx]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p50/gfs.t{{ cyc }}z.pres_a.0p50.f000.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p50/gfs.t{{ cyc }}z.pres_a.0p50.f000.grib2]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p50/gfs.t{{ cyc }}z.pres_a.0p50.f000.grib2.idx, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p50/gfs.t{{ cyc }}z.pres_a.0p50.f000.grib2.idx]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/1p00/gfs.t{{ cyc }}z.pres_a.1p00.f000.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/1p00/gfs.t{{ cyc }}z.pres_a.1p00.f000.grib2]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/1p00/gfs.t{{ cyc }}z.pres_a.1p00.f000.grib2.idx, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/1p00/gfs.t{{ cyc }}z.pres_a.1p00.f000.grib2.idx]
 
         # Output atmospheric GRIB2 products for f001 (0p25 only - supplemental grids not at FHOUT_PGBS intervals)
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f001, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f001]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f001.idx, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f001.idx]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f001.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f001.grib2]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f001.grib2.idx, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f001.grib2.idx]
 
         # Output atmospheric GRIB2 products for f002 (0p25 only - supplemental grids not at FHOUT_PGBS intervals)
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f002, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f002]
-        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f002.idx, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pgrb2.0p25.f002.idx]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f002.grib2, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f002.grib2]
+        - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f002.grib2.idx, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/0p25/gfs.t{{ cyc }}z.pres_a.0p25.f002.grib2.idx]
 
         # Surface flux files - generated at 1p00 grid for ALL forecast hours
         - [{{ SRC_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/1p00/gfs.t{{ cyc }}z.flux.1p00.f000, {{ DST_DIR }}/gfs.{{ PDY }}/{{ cyc }}/products/atmos/grib2/1p00/gfs.t{{ cyc }}z.flux.1p00.f000]