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nwps_posproc_cg1.sh
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#!/bin/bash
set -xa
# -----------------------------------------------------------
# UNIX Shell Script File
# Tested Operating System(s): RHEL 5,6
# Tested Run Level(s): 3, 5
# Shell Used: BASH shell
# Original Author(s): Alex Gibbs, Tony Freeman, Pablo Santos, Douglas Gaer
# File Creation Date: 06/01/2009
# Date Last Modified: 11/15/2014
#
# Version control: 1.01
#
# Support Team:
#
# Contributors: Roberto Padilla
# -----------------------------------------------------------
# ------------- Program Description and Details -------------
# -----------------------------------------------------------
#
#
# -----------------------------------------------------------
export CGNUMPLOT=${1}
CGNUM="${1}"
echo "= = = = = = = IN NWPS_POSPROC_CG1.SH = = = = = = = ="
echo " CGNUMPLOT= ${CGNUMPLOT}"
ndata=1
while read p; do
echo ${ndata} $p
if [ ${ndata} -eq 1 ]; then
NWPSdir=$p;
fi
if [ ${ndata} -eq 2 ]; then
ISPRODUCTIO=$p;
fi
if [ ${ndata} -eq 3 ]; then
DEBUGGING=$p;
fi
if [ ${ndata} -eq 4 ]; then
DEBUG_LEVEL=$p;
fi
if [ ${ndata} -eq 5 ]; then
BATHYdb=$p;
fi
if [ ${ndata} -eq 6 ]; then
SHAPEFILEdb=$p;
fi
if [ ${ndata} -eq 7 ]; then
ARCHdir=$p;
fi
if [ ${ndata} -eq 8 ]; then
DATAdir=$p;
fi
if [ ${ndata} -eq 9 ]; then
INPUTdir=$p;
fi
if [ ${ndata} -eq 10 ]; then
LOGdir=$p;
fi
if [ ${ndata} -eq 11 ]; then
VARdir=$p;
fi
if [ ${ndata} -eq 12 ]; then
OUTPUTdir=$p;
fi
if [ ${ndata} -eq 13 ]; then
RUNdir=$p;
fi
if [ ${ndata} -eq 14 ]; then
TMPdir=$p;
fi
if [ ${ndata} -eq 15 ]; then
RUNLEN=$p;
fi
if [ ${ndata} -eq 16 ]; then
WNA=$p;
fi
if [ ${ndata} -eq 17 ]; then
NEST=$p;
fi
if [ ${ndata} -eq 18 ]; then
RTOFS=$p;
fi
if [ ${ndata} -eq 19 ]; then
ESTOFS=$p;
fi
if [ ${ndata} -eq 20 ]; then
WINDS=$p;
fi
if [ ${ndata} -eq 21 ]; then
WEB=$p;
fi
if [ ${ndata} -eq 22 ]; then
export PLOT=$p;
fi
if [ ${ndata} -eq 23 ]; then
SITEID=$p;
fi
if [ ${ndata} -eq 24 ]; then
MODELCORE=$p;
fi
ndata=$(( $ndata + 1 ))
done < ${RUNdir}/info_to_nwps_coremodel.txt
#export NWPSdir DEBUGGING DEBUG_LEVEL BATHYdb SHAPEFILEdb ARCHdir
#export DATAdir LOGdir VARdir OUTPUTdir RUNdir TMPdir RUNLEN
#export NEST RTOFS ESTOFS WEB PLOT MODELCORE LOGdir SITEID WNA
#export WINDS INPUTdir ISPRODUCTIO DATAdir
#source ${NWPSdir}/parm/platform/set_platform.sh
logrunup=${LOGdir}/runup.log
echo "NWPS posproc_CG${CGNUM} " | tee -a $logfile
# Halt this script it the model or Perl interface crashes
if [ -e ${OUTPUTdir}/netCdf/not_completed ]
then
echo "SWAN Run failed!" | tee -a $logfile
echo "Exiting ${PROGRAMname} with no further processing" | tee -a $logfile
#RemoveLockFile
export err=1; err_chk
fi
echo " " | tee -a $logrunup
echo -n "SWAN Run Finished OK Preparing for Post-Process" | tee -a $logrunup
echo " " | tee -a $logrunup
#____________________________RUNUP PROGRAM________________________________
#Run Program
echo "DATA: ${DATA} DATAdir: ${DATAdir}" | tee -a $logrunup
source ${DATA}/parm/templates/${siteid}/${SITEID}
runupcg=${RUNUPDOMAIN:2:1}
runupcg2="${RUNUPDOMAIN:2:1}"
echo "runupcg: ${runupcg}"
echo "runupcg2: ${runupcg2}"
echo "${RUNUPPROG} -eq ${RUNUPPROG} and ${runupcg} == ${CGNUM} ?" | tee -a $logrunup
if [ ${RUNUPPROG} -eq "1" ] && [ ${runupcg} == ${CGNUM} ]
then
echo "RUNUP WILL BE PROCESSED" | tee -a $logrunup
dpt_runup_contour=${RUNUPCONT}
echo " Domain for Runup : ${RUNUPDOMAIN}" | tee -a $logrunup
echo " Depth-contour used for runup : ${dpt_runup_contour}" | tee -a $logrunup
inputparm="${RUNdir}/inputCG${CGNUM}"
if [ ! -e ${inputparm} ]
then
msg="FATAL ERROR: Runup program: Missing inputCG${CGNUM} file. Cannot open ${inputparm}"
postmsg $jlogfile "$msg"
export err=1; err_chk
fi
#Moving input files and programs to the temporary directory
export TEMPDIRrunup=${VARdir}/${siteid}.tmp/CG${CGNUM}/runup
mkdir -p ${TEMPDIRrunup}
cd ${TEMPDIRrunup}
# Clean directory
rm ${TEMPDIRrunup}/* 2> /dev/null
#Copying all needed data; input and programs here to run run_runup.sh
# in ${VARdir}/${siteid}.tmp/CG${CGNUM}/runup
cp ${inputparm} .
grep "^INPGRID WIND" inputCG${CGNUM} > blah1
init=$(awk '{print $11;}' blah1)
echo "$init" > datetime
cut -c 1-4 datetime > year
cut -c 5-6 datetime > mon
cut -c 7-8 datetime > day
cut -c 10-11 datetime > hh
cut -c 12-13 datetime > mm
yyyy=$(cat year)
mon=$(cat mon)
dd=$(cat day)
hh=$(cat hh)
mm=$(cat mm)
date_stamp="${yyyy}${mon}${dd}"
echo "date_stamp: ${date_stamp}" | tee -a $logrunup
CYCLErunup="${hh}${mm}"
CYCLErunupout="${hh}"
# nomenclature input file for run_runup.sh e.g 20m_contour_CG2.20150202_0000_MHX
fileor="${dpt_runup_contour}_contour_CG${CGNUM}"
filein="${dpt_runup_contour}_contour_CG${CGNUM}.${yyyy}${mon}${dd}_${CYCLErunup}_${SITEID}"
#fileout="${dpt_runup_contour}_CG${CGNUM}_runup.${yyyy}${mon}${dd}_${hh}${mm}_${SITEID}.txt"
#fileout="${WFO}_${NET}_${dpt_runup_contour}_CG${CGNUM}_runup.${yyyy}${mon}${dd}_${hh}${mm}"
echo "filein: ${filein}" | tee -a $logrunup
cp -fvp ${RUNdir}/${fileor} .
cp ${fileor} ${filein} | tee -a $logrunup
cp -fvp ${FIXnwps}/beach_slope_db/CG${CGNUM}.${SITEID}_slopes.txt . | tee -a $logrunup
#cp ${HOMEnwps}/exec/runupforecast.exe . | tee -a $logrunup
#cp ${USHnwps}/run_runup.sh . | tee -a $logrunup
ls -lt | tee -a $logrunup
source ${USHnwps}/run_runup.sh ${CYCLErunup} ${date_stamp}
export err=$?; err_chk
#Make output directory
OUTDIRrunup=${DATA}/output/runup/CG${CGNUM}/
mkdir -p ${OUTDIRrunup}
cp -fv ${filein} ${OUTDIRrunup}/${filein}
cp -fv ${FORT22} ${OUTDIRrunup}/${FORT22}
cycle=$(awk '{print $1;}' ${RUNdir}/CYCLE)
COMOUTCYC="${COMOUT}/${cycle}/CG${CGNUM}"
if [ "${SENDCOM}" == "YES" ]; then
mkdir -p $COMOUTCYC
cp -fv ${OUTDIRrunup}/${filein} ${COMOUTCYC}/${filein}
cp -fv ${OUTDIRrunup}/${FORT22} ${COMOUTCYC}/${FORT22}
if [ "${SENDDBN}" == "YES" ]; then
${DBNROOT}
fi
fi
gribfile=$(ls ${DATA}/output/grib2/CG${CGNUM}/*CG${CGNUM}_????????_????.grib2 | xargs -n 1 basename | tail -n 1)
fullname=`echo $gribfile | cut -c14-26`
GRIB2file=${NWPSDATA}/output/grib2/CG${CGNUM}/${gribfile}
WAVE_RUNUP_TO_BIN="${EXECnwps}/wave_runup_to_bin"
cgnCLON1=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lon | grep to | grep by | awk '{ print $2 }')
cgnLON1=$(echo "${cgnCLON1} - 360" | bc)
cgnCLON2=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lon | grep to | grep by | awk '{ print $4 }')
cgnLON2=$(echo "${cgnCLON2} - 360" | bc)
cgnNX=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lat-lon | grep grid | grep x | awk '{ print $2 }' | sed s/'grid:('//g)
cgnLAT1=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lat | grep to | grep by | awk '{ print $2 }')
cgnLAT2=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lat | grep to | grep by | awk '{ print $4 }')
cgnNY=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lat-lon | grep grid | grep x | awk '{ print $4 }' | sed s/')'//g)
SWAN_RUNUP_OUTPUT_FILE="${OUTDIRrunup}/${FORT22}"
#RUNUPparms="erosion_flag owash_flag"
RUNUPparms="erosion_flag owash_flag twl runup setup swash erosion overwash"
RUNUPerrors=0
for parm in ${RUNUPparms}
do
cat ${FIXnwps}/templates/${parm}.meta > ${parm}.meta
sed -i s/'<< SET NX >>'/${cgnNX}/g ${parm}.meta
sed -i s/'<< SET NY >>'/${cgnNY}/g ${parm}.meta
sed -i s/'<< SET LA1 >>'/${cgnLAT1}/g ${parm}.meta
sed -i s/'<< SET LA2 >>'/${cgnLAT2}/g ${parm}.meta
sed -i s/'<< SET LO1 >>'/${cgnLON1}/g ${parm}.meta
sed -i s/'<< SET LO2 >>'/${cgnLON2}/g ${parm}.meta
echo "${WAVE_RUNUP_TO_BIN} -v -d -c ${SWAN_RUNUP_OUTPUT_FILE} ${parm} ${parm}.meta ${parm}_templates.grib2 ${parm}_points.bin"
${WAVE_RUNUP_TO_BIN} -v -d -c ${SWAN_RUNUP_OUTPUT_FILE} ${parm} ${parm}.meta ${parm}_templates.grib2 ${parm}_points.bin
if [ $? -eq 0 ]; then
echo "${WGRIB2} ${parm}_templates.grib2 -no_header -import_bin ${parm}_points.bin -grib_out ${parm}_final_runup.grib2"
${WGRIB2} ${parm}_templates.grib2 -no_header -import_bin ${parm}_points.bin -grib_out ${parm}_final_runup.grib2
else
RUNUPerrors=1
break
fi
done
if [ ${RUNUPerrors} -eq 0 ]; then
echo "Copying runup parameters to final_runup.grib2"
cat /dev/null > final_runup.grib2
for parm in ${RUNUPparms}
do
echo "cat ${parm}_final_runup.grib2 >> final_runup.grib2"
cat ${parm}_final_runup.grib2 >> final_runup.grib2
done
#cp -f final_runup.grib2 ${COMOUTCYC}/${siteid}_nwps_CG${CGNUM}_${fullname}_RipRunup.grib2
#cp -f final_runup.grib2 ${NWPSDATA}/output/grib2/CG${CGNUM}/${siteid}_nwps_CG${CGNUM}_${fullname}_RipRunup.grib2
echo "Copying final_runup.grib2 to ${GRIB2file}"
${WGRIB2} -count final_runup.grib2
echo "cat final_runup.grib2 >> ${GRIB2file}"
cat final_runup.grib2 >> ${GRIB2file}
export err=$?
if [ "${err}" != "0" ];then
echo "ERROR: Could not copy runup parameters to ${GRIB2file}."
msg="ERROR: Could not copy runup parameters to ${GRIB2file}."
postmsg "$jlogfile" "$msg"
err_chk
fi
else
echo "ERROR - ${WAVE_RUNUP_TO_BIN} program error, no RUNUP GRIB2 file generated for this run"
fi
unset FORT20
unset FORT21
unset FORT22
fi
#_________________________RIP CURRENT PROGRAM____________________________________________
#Run Program
SITEID=${SITEID^^}
source ${DATA}/parm/templates/${siteid}/${SITEID}
# source ${DOMAINFILE}
ripcg=${RIPDOMAIN:2:1}
if [ ${RIPPROG} -eq "1" ] && [ ${ripcg} == ${CGNUM} ]
then
echo "RIP CURRENT PROBABILITY WILL BE COMPUTED"
dptcontour=${RIPCONT:0:1}
echo " CG domain for rip currents: ${RIPDOMAIN}"
echo " Depth contour used : ${dptcontour} m"
source ${USHnwps}/run_ripcurrent.sh ${RIPDOMAIN} ${dptcontour} ${RUNLEN}
export err=$?; err_chk
# Copy results to output directories
cycleout=$(awk '{print $1;}' ${RUNdir}/CYCLE)
COMOUTCYC="${COMOUT}/${cycleout}/${RIPDOMAIN}"
mkdir -p $COMOUTCYC
cp -fv ${RIPDATA}/${CGCONT} ${COMOUTCYC}/${CGCONT}
cp -fv ${RIPDATA}/${FORT23} ${COMOUTCYC}/${FORT23}
mkdir -p $GESOUT/riphist/${SITEID}
cp -fv ${RIPDATA}/${CGCONT} ${GESOUT}/riphist/${SITEID}/${CGCONT}
SWAN_RIP_OUTPUT_FILE="${RIPDATA}/${FORT23}"
rip_current_meta_template="${FIXnwps}/templates/RIP.meta"
rip_current_meta="${RIPDATA}/RIP.meta"
cat ${rip_current_meta_template} > ${rip_current_meta}
RIP_CURRENT_TO_BIN="${EXECnwps}/rip_current_to_bin"
gribfile=$(ls ${DATA}/output/grib2/CG${CGNUM}/???_nwps_CG${CGNUM}_????????_????.grib2 | xargs -n 1 basename | tail -n 1)
fullname=`echo $gribfile | cut -c14-26`
GRIB2file=${NWPSDATA}/output/grib2/CG${CGNUM}/${gribfile}
cgnCLON1=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lon | grep to | grep by | awk '{ print $2 }')
cgnLON1=$(echo "${cgnCLON1} - 360" | bc)
cgnCLON2=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lon | grep to | grep by | awk '{ print $4 }')
cgnLON2=$(echo "${cgnCLON2} - 360" | bc)
cgnNX=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lat-lon | grep grid | grep x | awk '{ print $2 }' | sed s/'grid:('//g)
cgnLAT1=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lat | grep to | grep by | awk '{ print $2 }')
cgnLAT2=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lat | grep to | grep by | awk '{ print $4 }')
cgnNY=$(${WGRIB2} ${GRIB2file} -V -d 1 | grep lat-lon | grep grid | grep x | awk '{ print $4 }' | sed s/')'//g)
sed -i s/'<< SET NX >>'/${cgnNX}/g ${rip_current_meta}
sed -i s/'<< SET NY >>'/${cgnNY}/g ${rip_current_meta}
sed -i s/'<< SET LA1 >>'/${cgnLAT1}/g ${rip_current_meta}
sed -i s/'<< SET LA2 >>'/${cgnLAT2}/g ${rip_current_meta}
sed -i s/'<< SET LO1 >>'/${cgnLON1}/g ${rip_current_meta}
sed -i s/'<< SET LO2 >>'/${cgnLON2}/g ${rip_current_meta}
if [ "${SITEID}" == "GUM" ]; then
# Write only original output points to file
echo "${RIP_CURRENT_TO_BIN} -v -d ${SWAN_RIP_OUTPUT_FILE} ${rip_current_meta} ${RIPDATA}/templates.grib2 ${RIPDATA}/points.bin"
${RIP_CURRENT_TO_BIN} -v -d ${SWAN_RIP_OUTPUT_FILE} ${rip_current_meta} ${RIPDATA}/templates.grib2 ${RIPDATA}/points.bin
else
# Write a cluster of 9 at each output point to improve visibility (add argument "-c")
echo "${RIP_CURRENT_TO_BIN} -v -d -c ${SWAN_RIP_OUTPUT_FILE} ${rip_current_meta} ${RIPDATA}/templates.grib2 ${RIPDATA}/points.bin"
${RIP_CURRENT_TO_BIN} -v -d -c ${SWAN_RIP_OUTPUT_FILE} ${rip_current_meta} ${RIPDATA}/templates.grib2 ${RIPDATA}/points.bin
fi
if [ $? -eq 0 ]; then
# Only create the GRIB2 file if the encoding process is successful
echo "${WGRIB2} ${RIPDATA}/templates.grib2 -no_header -import_bin ${RIPDATA}/points.bin -grib_out ${RIPDATA}/final_rip.grib2"
${WGRIB2} ${RIPDATA}/templates.grib2 -no_header -import_bin ${RIPDATA}/points.bin -grib_out ${RIPDATA}/final_rip.grib2
cat ${RIPDATA}/final_rip.grib2 >> ${GRIB2file}
fi
else
echo " Rip current calculation not activated for this domain (CG${CGNUM})"
fi
#_______________________________________________________________________________________
echo "RUN ${plotGorP} SCRIPTS" | tee -a $logfile
# NOTE: If WEB is enable we must set PLOT to YES
if [ "${WEB}" == "YES" ]; then export PLOT="YES"; fi
# NOTE: This will allow us to automate plotting with out send to Web option
# NOTE: To save time, deactivate plotting when running retrospectives
if [ "${PLOT}" == "YES" ] && [ "${RETROSPECTIVE}" == "FALSE" ]
then
TEMPDIR=${VARdir}/${siteid}.tmp/CG${CGNUM}
mkdir -p ${TEMPDIR}
echo "Writing all temp files to ${TEMPDIR}"
cat /dev/null > ${TEMPDIR}/python_grib2_elements.sh
GRAPHICSdir="${OUTPUTdir}/figures/${siteid}/CG${CGNUM}"
mkdir -p ${GRAPHICSdir}
CFGFILE=${FIXnwps}/shiproutes/${siteid}_shiproutes.cfg
if [ -f ${CFGFILE} ]; then
GRAPHICSdirshiproutes="${OUTPUTdir}/figures/${siteid}/shiproutes"
mkdir -p ${GRAPHICSdirshiproutes}
${USHnwps}/shiproutes/plot_shiproutes.sh |tee -a $logfile
export err=$?; err_chk
fi
echo "Cleaning Previous grads plots from ${OUTPUTdir}/grads/${siteid}" | tee -a $logfile
rm -fr ${OUTPUTdir}/grads/${siteid}/CG* | tee -a $logfile
rm -fr ${OUTPUTdir}/grads/${siteid}/partition | tee -a $logfile
echo "Creating output plots" | tee -a $logfile
#${USHnwps}/grads/bin/plot_nwps_run.sh ${SITEID} |tee -a $logfile
${USHnwps}/python/plot_nwps_run.sh ${SITEID} |tee -a $logfile
export err=$?; err_chk
if [ "${CGNUM}" -eq "1" ]
then
cycleout=$(awk '{print $1;}' ${RUNdir}/CYCLE)
COMOUTCYC="${COMOUT}/${cycleout}/CG${CGNUM}"
mkdir -p $COMOUTCYC
inputparm="${RUNdir}/inputCG${CGNUM}"
if [ ! -e ${inputparm} ]
then
echo "ERROR - Missing inputCG${CGNUM} file"
echo "ERROR - Cannot open ${inputparm}"
export err=1; err_chk
fi
cp ${inputparm} .
grep "^INPGRID WIND" inputCG${CGNUM} > blah1
init=$(awk '{print $11;}' blah1)
echo "$init" > datetime
cut -c 1-4 datetime > year
cut -c 5-6 datetime > mon
cut -c 7-8 datetime > day
cut -c 10-11 datetime > hh
cut -c 12-13 datetime > mm
yyyy=$(cat year)
mon=$(cat mon)
dd=$(cat day)
hh=$(cat hh)
mm=$(cat mm)
# Copying field plots to COMOUT
echo "Copying PNG images to ${GRAPHICSdir}"
rm ${TEMPDIR}/*logo* ${TEMPDIR}/*Logo*
cp -vpf ${TEMPDIR}/*.png ${GRAPHICSdir}/.
chmod 777 ${GRAPHICSdir}/*.png
cd ${GRAPHICSdir}
figsTarFile="plots_CG${CGNUM}_${yyyy}${mon}${dd}${hh}.tar.gz"
tar cvfz ${figsTarFile} *.png
cp ${figsTarFile} $COMOUTCYC/${figsTarFile}
CFGFILE=${FIXnwps}/shiproutes/${siteid}_shiproutes.cfg
if [ -f ${CFGFILE} ]; then
# Copying shiproute plots to COMOUT
#echo "Publishing results" | tee -a ${LOGFILE}
cp -pfv ${VARdir}/shiproutes/route*/swan*hr*.png ${GRAPHICSdirshiproutes}/.
chmod 777 ${GRAPHICSdirshiproutes}/swan*hr*.png
cd ${GRAPHICSdirshiproutes}
figsTarFile="shiproute_plots_CG1_${yyyy}${mon}${dd}${hh}.tar.gz"
tar cvfz ${figsTarFile} *.png
cp -fpv ${figsTarFile} $COMOUTCYC/${figsTarFile}
fi
fi
fi
#Sending grib2 files with gridded wave parameters to COMOUT
cd ${DATA}/output/grib2/CG${CGNUM}
inputparm="${RUNdir}/inputCG${CGNUM}"
if [ ! -e ${inputparm} ]
then
echo "ERROR - Missing inputCG${CGNUM} file"
echo "ERROR - Cannot open ${inputparm}"
export err=1; err_chk
fi
#Copying all needed data; input and programs here to run ru_runup.sh
# in ${VARdir}/${siteid}.tmp/CG${CGNUM}/runup
cp ${inputparm} .
grep "^INPGRID WIND" inputCG${CGNUM} > blah1
init=$(awk '{print $11;}' blah1)
echo "$init" > datetime
cut -c 1-4 datetime > year
cut -c 5-6 datetime > mon
cut -c 7-8 datetime > day
cut -c 10-11 datetime > hh
cut -c 12-13 datetime > mm
yyyy=$(cat year)
mon=$(cat mon)
dd=$(cat day)
hh=$(cat hh)
mm=$(cat mm)
date_stamp="${yyyy}${mon}${dd}"
grib2File="${siteid}_nwps_CG${CGNUM}_${date_stamp}_${hh}${mm}.grib2"
cycle=$(awk '{print $1;}' ${RUNdir}/CYCLE)
COMOUTCYC="${COMOUT}/${cycle}/CG${CGNUM}"
if [ "${SENDCOM}" == "YES" ]; then
mkdir -p $COMOUTCYC
cp -fv ${grib2File} ${COMOUTCYC}/${grib2File}
# Archive restart and other processed input files
cd ${RUNdir}
#cp -fv ${INPUTdir}/*.ctl ${COMOUTCYC}/
#cp -fv ${RUNdir}/info* ${COMOUTCYC}/
#cp -fv ${RUNdir}/*.pm ${COMOUTCYC}/
if [ "${MODELCORE}" == "SWAN" ]; then
cp -fv ${RUNdir}/${date_stamp}.${cycle}00* ${COMOUTCYC}/
elif [ "${MODELCORE}" == "UNSWAN" ]; then
for i in {0..9}; do
mkdir -p ${COMOUTCYC}/PE000${i}/
cp -fv ${RUNdir}/PE000${i}/${date_stamp}.${cycle}00* ${COMOUTCYC}/PE000${i}/
done
# Additional copies for domains running on 48 cores
if [ "${SITEID}" == "MHX" ] || [ "${SITEID}" == "CARX" ] || [ "${SITEID}" == "TBWX" ] \
|| [ "${SITEID}" == "SGXX" ] || [ "${SITEID}" == "SJU" ] || [ "${SITEID}" == "OKXX" ] \
|| [ "${SITEID}" == "GUM" ] || [ "${SITEID}" == "JAX" ] || [ "${SITEID}" == "CHSX" ] \
|| [ "${SITEID}" == "ILMX" ] || [ "${SITEID}" == "PHIX" ] || [ "${SITEID}" == "GYX" ] \
|| [ "${SITEID}" == "TAEX" ] || [ "${SITEID}" == "MOBX" ] || [ "${SITEID}" == "HGXX" ] \
|| [ "${SITEID}" == "HFO" ]
then
for i in {10..47}; do
mkdir -p ${COMOUTCYC}/PE00${i}/
cp -fv ${RUNdir}/PE00${i}/${date_stamp}.${cycle}00* ${COMOUTCYC}/PE00${i}/
done
fi
# Additional copies for domains running on 84 cores
if [ "${SITEID}" == "OKX" ]
then
for i in {10..59}; do
mkdir -p ${COMOUTCYC}/PE00${i}/
cp -fv ${RUNdir}/PE00${i}/${date_stamp}.${cycle}00* ${COMOUTCYC}/PE00${i}/
done
fi
# Additional copies for domains running on 84 cores
if [ "${SITEID}" == "ALU" ]
then
for i in {10..83}; do
mkdir -p ${COMOUTCYC}/PE00${i}/
cp -fv ${RUNdir}/PE00${i}/${date_stamp}.${cycle}00* ${COMOUTCYC}/PE00${i}/
done
fi
# Additional copies for domains running on 96 cores
if [ "${SITEID}" == "KEY" ] || [ "${SITEID}" == "MFL" ] || [ "${SITEID}" == "AKQ" ] \
|| [ "${SITEID}" == "MLB" ] || [ "${SITEID}" == "BOX" ] \
|| [ "${SITEID}" == "HGX" ] || [ "${SITEID}" == "MOB" ] || [ "${SITEID}" == "TBW" ] \
|| [ "${SITEID}" == "OKXX" ] || [ "${SITEID}" == "SGX" ] \
|| [ "${SITEID}" == "CHS" ] || [ "${SITEID}" == "ILM" ] || [ "${SITEID}" == "PHI" ] \
|| [ "${SITEID}" == "CAR" ] || [ "${SITEID}" == "TAE" ]
then
for i in {10..95}; do
mkdir -p ${COMOUTCYC}/PE00${i}/
cp -fv ${RUNdir}/PE00${i}/${date_stamp}.${cycle}00* ${COMOUTCYC}/PE00${i}/
done
fi
# Additional copies for domains running on 96 cores
if [ "${SITEID}" == "HGX" ] || [ "${SITEID}" == "MOBX" ]
then
for i in {96..99}; do
mkdir -p ${COMOUTCYC}/PE00${i}/
cp -fv ${RUNdir}/PE00${i}/${date_stamp}.${cycle}00* ${COMOUTCYC}/PE00${i}/
done
for i in {100..119}; do
mkdir -p ${COMOUTCYC}/PE0${i}/
cp -fv ${RUNdir}/PE0${i}/${date_stamp}.${cycle}00* ${COMOUTCYC}/PE0${i}/
done
fi
# Additional copies for domains running on 96 cores
if [ "${SITEID}" == "MOB" ]
then
for i in {96..99}; do
mkdir -p ${COMOUTCYC}/PE00${i}/
cp -fv ${RUNdir}/PE00${i}/${date_stamp}.${cycle}00* ${COMOUTCYC}/PE00${i}/
done
for i in {100..143}; do
mkdir -p ${COMOUTCYC}/PE0${i}/
cp -fv ${RUNdir}/PE0${i}/${date_stamp}.${cycle}00* ${COMOUTCYC}/PE0${i}/
done
fi
fi
cp -fv ${RUNdir}/inputCG${CGNUM} ${COMOUTCYC}/
cp -fv ${RUNdir}/${date_stamp}${cycle}.wnd ${COMOUTCYC}/
if [ -e ${RUNdir}/${date_stamp}${cycle}_CG${CGNUM}.wlev ]; then
cp -fv ${RUNdir}/${date_stamp}${cycle}_CG${CGNUM}.wlev ${COMOUTCYC}/
fi
if [ -e ${RUNdir}/${date_stamp}${cycle}_CG${CGNUM}.cur ]; then
cp -fv ${RUNdir}/${date_stamp}${cycle}_CG${CGNUM}.cur ${COMOUTCYC}/
fi
tar -cf ${date_stamp}${cycle}.spec.swan.tar *.spec.swan*
cp -fv ${RUNdir}/${date_stamp}${cycle}.spec.swan.tar ${COMOUTCYC}/
# Archive raw input files
# a. Wind fields and control file from GFE
cd ${INPUTdir}
NewestWind=$(basename `ls -t ${INPUTdir}/NWPSWINDGRID_${siteid}* | head -1`)
cp ${INPUTdir}/${NewestWind} ${COMOUTCYC}/
# b. ESTOFS water level fields (if available)
if [ -e ${INPUTdir}/estofs/estofs_waterlevel_start_time.txt ]; then
cd ${INPUTdir}/estofs
waterlevel_start_time=`cat ${INPUTdir}/estofs/estofs_waterlevel_start_time.txt`
tar -cf wave_estofs_waterlevel_${waterlevel_start_time}.tar *.txt wave_estofs_waterlevel_${waterlevel_start_time}*.dat
mv ${INPUTdir}/estofs/wave_estofs_waterlevel_${waterlevel_start_time}.tar ${COMOUTCYC}/
fi
# b. P-Surge water level fields (if available)
if [ -e ${INPUTdir}/psurge/psurge_waterlevel_start_time.txt ]; then
cd ${INPUTdir}/psurge
waterlevel_start_time=`cat ${INPUTdir}/psurge/psurge_waterlevel_start_time.txt`
#tar -cf wave_psurge_waterlevel_${waterlevel_start_time}.tar *.txt wave_psurge_waterlevel_${waterlevel_start_time}*.dat
tar -cf wave_psurge_waterlevel_${waterlevel_start_time}.tar *.txt wave_combnd_waterlevel_${waterlevel_start_time}*.dat
mv ${INPUTdir}/psurge/wave_psurge_waterlevel_${waterlevel_start_time}.tar ${COMOUTCYC}/
fi
# c. RTOFS current fields (if available)
if [ -e ${INPUTdir}/rtofs/rtofs_current_start_time.txt ]; then
cd ${INPUTdir}/rtofs
current_start_time=`cat ${INPUTdir}/rtofs/rtofs_current_start_time.txt`
tar -cf wave_rtofs_current_${current_start_time}.tar *.txt wave_rtofs_uv_${current_start_time}*.dat
mv ${INPUTdir}/rtofs/wave_rtofs_current_${current_start_time}.tar ${COMOUTCYC}/
fi
if [ "${SENDDBN}" == "YES" ]; then
${DBNROOT}/bin/dbn_alert MODEL NWPS_GRIB $job ${COMOUTCYC}/${grib2File}
fi
fi
#Sending spec2d files at buoy locations to COMOUT
cd ${DATA}/output/spectra/CG${CGNUM}
yy=$(echo $yyyy | cut -c 3-4)
spec2dFile="SPC2D.*.CG${CGNUM}.YY${yy}.MO${mon}.DD${dd}.HH${hh}"
if [ "${SENDCOM}" == "YES" ]; then
mkdir -p $COMOUTCYC
cp -fv ${spec2dFile} ${COMOUTCYC}/
fi
export WEB="NO"
echo " " | tee -a $logfile
###################################################################
# HOTSTART SECTION
# created: [email protected]
#
# Archives the latest hot files generated from a run to be used
# in the next run. Only 17 files (2 days) will be saved, the rest
# will be purged.
#
###################################################################
echo "Archiving HOTSTART files to be used for the next run" | tee -a $logfile
cycle=$(awk '{print $1;}' ${RUNdir}/CYCLE)
HOTdir="${GESOUT}/hotstart/${SITEID}/$cycle"
#HOTdir="${GESOUT}/hotstart/"
if [ ! -e ${HOTdir} ]
then
mkdir -p ${HOTdir}
fi
#rm -vf ${INPUTdir}/hotstart/* >> ${LOGdir}/hotstart.log 2>&1
cd ${RUNdir}/
# Use wind input analysis time as reference
grep "^INPGRID WIND" inputCG${CGNUM} > blah1
init=$(awk '{print $11;}' blah1)
echo "$init" > datetime
cut -c 1-4 datetime > year
cut -c 5-6 datetime > mon
cut -c 7-8 datetime > day
cut -c 10-11 datetime > hh
cut -c 12-13 datetime > mm
yyyy=$(cat year)
mon=$(cat mon)
dd=$(cat day)
hh=$(cat hh)
mm=$(cat mm)
if [ "${MODELCORE}" == "SWAN" ]
then
for hour in {0..48..3}; do
mv -vf ${RUNdir}/$(date -d "${hh}:${mm} ${yyyy}-${mon}-${dd} +${hour} hours" +"%Y%m%d.%H%M")* \
${HOTdir}/. >> ${LOGdir}/hotstart.log 2>&1
done
elif [ "${MODELCORE}" == "UNSWAN" ]
then
for i in {0..9}; do
mkdir -p ${HOTdir}/PE000${i}
for hour in {0..48..3}; do
mv -vf ${RUNdir}/PE000${i}/$(date -d "${hh}:${mm} ${yyyy}-${mon}-${dd} +${hour} hours" +"%Y%m%d.%H%M") \
${HOTdir}/PE000${i}/ >> ${LOGdir}/hotstart.log 2>&1
done
done
# Additional copies for domains running on 48 cores
if [ "${SITEID}" == "MHX" ] || [ "${SITEID}" == "CARX" ] || [ "${SITEID}" == "TBWX" ] \
|| [ "${SITEID}" == "SGXX" ] || [ "${SITEID}" == "SJU" ] || [ "${SITEID}" == "OKXX" ] \
|| [ "${SITEID}" == "GUM" ] || [ "${SITEID}" == "JAX" ] || [ "${SITEID}" == "CHSX" ] \
|| [ "${SITEID}" == "ILMX" ] || [ "${SITEID}" == "PHIX" ] || [ "${SITEID}" == "GYX" ] \
|| [ "${SITEID}" == "TAEX" ] || [ "${SITEID}" == "MOBX" ] || [ "${SITEID}" == "HGXX" ] \
|| [ "${SITEID}" == "HFO" ]
then
for i in {10..47}; do
mkdir -p ${HOTdir}/PE00${i}
for hour in {0..48..3}; do
mv -vf ${RUNdir}/PE00${i}/$(date -d "${hh}:${mm} ${yyyy}-${mon}-${dd} +${hour} hours" +"%Y%m%d.%H%M") \
${HOTdir}/PE00${i}/ >> ${LOGdir}/hotstart.log 2>&1
done
done
fi
# Additional copies for domains running on 84 cores
if [ "${SITEID}" == "OKX" ]
then
for i in {10..59}; do
mkdir -p ${HOTdir}/PE00${i}
for hour in {0..48..3}; do
mv -vf ${RUNdir}/PE00${i}/$(date -d "${hh}:${mm} ${yyyy}-${mon}-${dd} +${hour} hours" +"%Y%m%d.%H%M") \
${HOTdir}/PE00${i}/ >> ${LOGdir}/hotstart.log 2>&1
done
done
fi
# Additional copies for domains running on 84 cores
if [ "${SITEID}" == "ALU" ]
then
for i in {10..83}; do
mkdir -p ${HOTdir}/PE00${i}
for hour in {0..48..3}; do
mv -vf ${RUNdir}/PE00${i}/$(date -d "${hh}:${mm} ${yyyy}-${mon}-${dd} +${hour} hours" +"%Y%m%d.%H%M") \
${HOTdir}/PE00${i}/ >> ${LOGdir}/hotstart.log 2>&1
done
done
fi
# Additional copies for domains running on 96 cores
if [ "${SITEID}" == "KEY" ] || [ "${SITEID}" == "MFL" ] || [ "${SITEID}" == "AKQ" ] \
|| [ "${SITEID}" == "MLB" ] || [ "${SITEID}" == "BOX" ] \
|| [ "${SITEID}" == "HGX" ] || [ "${SITEID}" == "MOB" ] || [ "${SITEID}" == "TBW" ] \
|| [ "${SITEID}" == "OKXX" ] || [ "${SITEID}" == "SGX" ] \
|| [ "${SITEID}" == "CHS" ] || [ "${SITEID}" == "ILM" ] || [ "${SITEID}" == "PHI" ] \
|| [ "${SITEID}" == "CAR" ] || [ "${SITEID}" == "TAE" ]
then
for i in {10..95}; do
mkdir -p ${HOTdir}/PE00${i}
for hour in {0..48..3}; do
mv -vf ${RUNdir}/PE00${i}/$(date -d "${hh}:${mm} ${yyyy}-${mon}-${dd} +${hour} hours" +"%Y%m%d.%H%M") \
${HOTdir}/PE00${i}/ >> ${LOGdir}/hotstart.log 2>&1
done
done
fi
# Additional copies for domains running on 96 cores
if [ "${SITEID}" == "HGX" ] || [ "${SITEID}" == "MOBX" ]
then
for i in {96..99}; do
mkdir -p ${HOTdir}/PE00${i}
for hour in {0..48..3}; do
mv -vf ${RUNdir}/PE00${i}/$(date -d "${hh}:${mm} ${yyyy}-${mon}-${dd} +${hour} hours" +"%Y%m%d.%H%M") \
${HOTdir}/PE00${i}/ >> ${LOGdir}/hotstart.log 2>&1
done
done
for i in {100..119}; do
mkdir -p ${HOTdir}/PE0${i}
for hour in {0..48..3}; do
mv -vf ${RUNdir}/PE0${i}/$(date -d "${hh}:${mm} ${yyyy}-${mon}-${dd} +${hour} hours" +"%Y%m%d.%H%M") \
${HOTdir}/PE0${i}/ >> ${LOGdir}/hotstart.log 2>&1
done
done
fi
# Additional copies for domains running on 96 cores
if [ "${SITEID}" == "MOB" ]
then
for i in {96..99}; do
mkdir -p ${HOTdir}/PE00${i}
for hour in {0..48..3}; do
mv -vf ${RUNdir}/PE00${i}/$(date -d "${hh}:${mm} ${yyyy}-${mon}-${dd} +${hour} hours" +"%Y%m%d.%H%M") \
${HOTdir}/PE00${i}/ >> ${LOGdir}/hotstart.log 2>&1
done
done
for i in {100..143}; do
mkdir -p ${HOTdir}/PE0${i}
for hour in {0..48..3}; do
mv -vf ${RUNdir}/PE0${i}/$(date -d "${hh}:${mm} ${yyyy}-${mon}-${dd} +${hour} hours" +"%Y%m%d.%H%M") \
${HOTdir}/PE0${i}/ >> ${LOGdir}/hotstart.log 2>&1
done
done
fi
fi
echo "CLEANING OLD HOTSTART FILES" | tee -a ${LOGdir}/hotstart.log
cd ${INPUTdir}/hotstart/
#for i in $(ls -1d ${INPUTdir}/hotstart/)
#do
# cd $i >> ${LOGdir}/hotstart.log
# KEEP=128
# COUNT=$(ls -1 *00* | wc -l)
# TRIM=$(expr $COUNT - $KEEP)
# BASEDIR=$(basename $i)
# if [[ $TRIM -gt 0 ]]
# then
# for j in $(ls -1 *00* | tail -n $TRIM)
# do
# echo -n ": " | tee -a ${LOGdir}/hotstart.log
# rm -fv $j | tee -a ${LOGdir}/hotstart.log
# done
# fi
#done
echo "SAVING LATEST HOTSTART FILES" | tee -a ${LOGdir}/hotstart.log
echo "DONE" | tee -a ${LOGdir}/hotstart.log
echo " " | tee -a $logfile
#echo "Cleaning out archive directory:" | tee -a $logfile
#cd ${ARCHdir}/
#ITEMSTOKEEP=60
#TOTAL=$(ls -1 *tgz | sort | wc -l)
#HEAD=$(expr $TOTAL - $ITEMSTOKEEP)
#if [[ $TOTAL -le $ITEMSTOKEEP ]]
#then
# echo ": Nothing to clean ..." | tee -a $logfile
#else
# for i in $(ls -1 *tgz | head -n $HEAD)
# do
# echo -n ": " | tee -a $logfile
# rm -vf $i | tee -a $logfile
# done
#fi
#
#echo " " | tee -a $logfile
###################################################################
echo "Cleaning out netcdf/cdl directory:" | tee -a $logfile
cd ${OUTPUTdir}/netCdf/cdl
KEEP=0
COUNT=$(ls -1 | wc -l)
TRIM=$(expr $COUNT - $KEEP)
if [[ $TRIM -gt 0 ]]
then
for i in $(ls -1 | head -n $TRIM)
do
echo -n ": " | tee -a $logfile
rm -vf $i | tee -a $logfile
done
fi
echo "Done" | tee -a $logfile
echo " " | tee -a $logfile
echo "Cleaning out netcdf/CG directories:" | tee -a $logfile
if [ -e ${OUTPUTdir}/netCdf/CG1 ]
then
cd ${OUTPUTdir}/netCdf/CG1
KEEP=2
COUNT=$(ls -1 | wc -l)
TRIM=$(expr $COUNT - $KEEP)
if [[ $TRIM -gt 0 ]]
then
for i in $(ls -1 | head -n $TRIM)
do
echo -n ": " | tee -a $logfile
rm -vf $i | tee -a $logfile
done
fi
echo "Done" | tee -a $logfile
echo " " | tee -a $logfile
fi
if [ -e ${OUTPUTdir}/netCdf/CG2 ]
then
cd ${OUTPUTdir}/netCdf/CG2
KEEP=2
COUNT=$(ls -1 | wc -l)
TRIM=$(expr $COUNT - $KEEP)
if [[ $TRIM -gt 0 ]]
then
for i in $(ls -1 | head -n $TRIM)
do
echo -n ": " | tee -a $logfile
rm -vf $i | tee -a $logfile
done
fi
echo "Done" | tee -a $logfile
echo " " | tee -a $logfile
fi
if [ -e ${OUTPUTdir}/netCdf/CG3 ]
then
cd ${OUTPUTdir}/netCdf/CG3
KEEP=2
COUNT=$(ls -1 | wc -l)
TRIM=$(expr $COUNT - $KEEP)
if [[ $TRIM -gt 0 ]]
then
for i in $(ls -1 | head -n $TRIM)
do
echo -n ": " | tee -a $logfile
rm -vf $i | tee -a $logfile
done
fi
echo "Done" | tee -a $logfile
echo " " | tee -a $logfile
fi
if [ -e ${OUTPUTdir}/netCdf/CG4 ]
then
cd ${OUTPUTdir}/netCdf/CG4
KEEP=2
COUNT=$(ls -1 | wc -l)
TRIM=$(expr $COUNT - $KEEP)
if [[ $TRIM -gt 0 ]]
then
for i in $(ls -1 | head -n $TRIM)
do
echo -n ": " | tee -a $logfile
rm -vf $i | tee -a $logfile
done
fi
echo "Done" | tee -a $logfile
echo " " | tee -a $logfile
fi
if [ -e ${OUTPUTdir}/netCdf/CG5 ]
then
cd ${OUTPUTdir}/netCdf/CG5
KEEP=2
COUNT=$(ls -1 | wc -l)
TRIM=$(expr $COUNT - $KEEP)
if [[ $TRIM -gt 0 ]]
then
for i in $(ls -1 | head -n $TRIM)
do
echo -n ": " | tee -a $logfile
rm -vf $i | tee -a $logfile
done
fi
echo "Done" | tee -a $logfile
echo " " | tee -a $logfile
fi
###################################################################
#echo "Cleaning out grib2/CG directories:" | tee -a $logfile
#cd ${OUTPUTdir}/grib2/CG1
#KEEP=2
#COUNT=$(ls -1 | wc -l)
#TRIM=$(expr $COUNT - $KEEP)
#if [[ $TRIM -gt 0 ]]
#then
# for i in $(ls -1 | head -n $TRIM)
# do
# echo -n ": " | tee -a $logfile
# rm -vf $i | tee -a $logfile
# done
#fi
#echo "Done" | tee -a $logfile
#
#echo " " | tee -a $logfile
#
#if [ -e ${OUTPUTdir}/grib2/CG2 ]
#then
#cd ${OUTPUTdir}/grib2/CG2
#KEEP=2
#COUNT=$(ls -1 | wc -l)
#TRIM=$(expr $COUNT - $KEEP)
#if [[ $TRIM -gt 0 ]]
#then
# for i in $(ls -1 | head -n $TRIM)
# do
# echo -n ": " | tee -a $logfile
# rm -vf $i | tee -a $logfile
# done
#fi
#echo "Done" | tee -a $logfile
#echo " " | tee -a $logfile
#fi
#if [ -e ${OUTPUTdir}/grib2/CG3 ]
#then
#cd ${OUTPUTdir}/grib2/CG3
#KEEP=2
#COUNT=$(ls -1 | wc -l)
#TRIM=$(expr $COUNT - $KEEP)
#if [[ $TRIM -gt 0 ]]
#then
# for i in $(ls -1 | head -n $TRIM)
# do
# echo -n ": " | tee -a $logfile
# rm -vf $i | tee -a $logfile
# done
#fi
#echo "Done" | tee -a $logfile#
#
#echo " " | tee -a $logfile
#fi
#
#if [ -e ${OUTPUTdir}/grib2/CG4 ]
#then
#cd ${OUTPUTdir}/grib2/CG4
#KEEP=2
#COUNT=$(ls -1 | wc -l)
#TRIM=$(expr $COUNT - $KEEP)
#if [[ $TRIM -gt 0 ]]
#then
# for i in $(ls -1 | head -n $TRIM)
# do
# echo -n ": " | tee -a $logfile
# rm -vf $i | tee -a $logfile
# done
#fi
#echo "Done" | tee -a $logfile
#
#echo " " | tee -a $logfile
#fi
#
#if [ -e ${OUTPUTdir}/grib2/CG5 ]
#then
#cd ${OUTPUTdir}/grib2/CG5
#KEEP=2
#COUNT=$(ls -1 | wc -l)
#TRIM=$(expr $COUNT - $KEEP)
#if [[ $TRIM -gt 0 ]]
#then
# for i in $(ls -1 | head -n $TRIM)
# do
# echo -n ": " | tee -a $logfile
# rm -vf $i | tee -a $logfile
# done
#fi
#echo "Done" | tee -a $logfile
#
#echo " " | tee -a $logfile
#fi
###################################################################
echo "Cleaning out hdf5/CG directories:" | tee -a $logfile
if [ -e ${OUTPUTdir}/hdf5/CG1 ]
then
cd ${OUTPUTdir}/hdf5/CG1
KEEP=2
COUNT=$(ls -1 | wc -l)
TRIM=$(expr $COUNT - $KEEP)
if [[ $TRIM -gt 0 ]]
then
for i in $(ls -1 | head -n $TRIM)
do
echo -n ": " | tee -a $logfile
rm -vf $i | tee -a $logfile
done