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<h1><a href="https://neurita.github.io/how_to_compile_mitk_on_docker"> How to compile <span class="caps">MITK</span> on Docker </a></h1>
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<h4>Contents</h4>
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<ul>
<li><a href="#required-packages">Required packages</a></li>
<li><a href="#install-dependencies">Install dependencies</a><ul>
<li><a href="#install-docker">Install Docker</a></li>
<li><a href="#install-mitk-in-the-container">Install <span class="caps">MITK</span> in the container</a></li>
<li><a href="#build-mitk">Build <span class="caps">MITK</span></a></li>
</ul>
</li>
<li><a href="#running-mitk">Running <span class="caps">MITK</span></a></li>
</ul>
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<div class="span8 article-content">
<h1 id="required-packages">Required packages<a class="headerlink" href="#required-packages" title="Permanent link">¶</a></h1>
<ul>
<li>Docker</li>
<li><span class="caps">GIT</span></li>
<li>CMake (version 3.2 or higher. Current stable 3.3)</li>
<li>Qt 5.x</li>
</ul>
<p><strong>Note:</strong> Make sure that you select a Qt version which provides the right <strong>OpenGL-enabled</strong> packages for your architecture and compiler.</p>
<h1 id="install-dependencies">Install dependencies<a class="headerlink" href="#install-dependencies" title="Permanent link">¶</a></h1>
<h2 id="install-docker">Install Docker<a class="headerlink" href="#install-docker" title="Permanent link">¶</a></h2>
<div class="highlight"><pre><span></span>$ sudo apt-get update
$ sudo apt-get install curl
$ curl -sSL https://get.docker.com/ <span class="p">|</span> sh
</pre></div>
<ul>
<li><strong>Option 1:</strong> Ubuntu 14.04</li>
</ul>
<p>Pull a Docker container with Ubuntu:14.04 and run it:</p>
<div class="highlight"><pre><span></span>$ docker pull ubuntu:14.04
$ docker images
$ docker run -i -t <IMAGE_ID> /bin/bash
</pre></div>
<p>Once inside the Ubuntu 14.04 container, install <span class="caps">MITK</span> dependencies:</p>
<div class="highlight"><pre><span></span>root@XXXXX:$ apt-get update <span class="o">&&</span> apt-get install -y <span class="se">\</span>
software-properties-common <span class="se">\</span>
<span class="o">&&</span> apt-add-repository multiverse <span class="se">\</span>
<span class="o">&&</span> apt-get update <span class="se">\</span>
<span class="o">&&</span> apt-get install -y <span class="se">\</span>
bison build-essential curl git libarchive-dev libbz2-ocaml-dev libcurl4-openssl-dev <span class="se">\</span>
libexpat-ocaml-dev libfaac-dev libmp3lame-dev libopencore-amrnb-dev libopencore-amrwb-dev <span class="se">\</span>
libqt5svg5-dev libqt5webkit5-dev libqt5xmlpatterns5-dev libtheora-dev libtiff5-dev <span class="se">\</span>
libvorbis-dev libvpx-dev libwrap0-dev libxi-dev libxmu-dev pkg-config qt5-default <span class="se">\</span>
qtscript5-dev qttools5-dev qttools5-dev-tools vim wget yasm libgtk2.0-dev
</pre></div>
<ul>
<li><strong>Option 2:</strong> Ubuntu 15.04</li>
</ul>
<p>Pull a Docker container with Ubuntu 15.04 and run it:</p>
<div class="highlight"><pre><span></span>$ docker pull ubuntu:15.04
$ docker images
$ docker run -i -t <IMAGE_ID> /bin/bash
</pre></div>
<p>Once inside the container:</p>
<div class="highlight"><pre><span></span>root@XXXXX:$ apt-get update <span class="o">&&</span> apt-get install -y <span class="se">\</span>
software-properties-common <span class="se">\</span>
<span class="o">&&</span> apt-add-repository multiverse <span class="se">\</span>
<span class="o">&&</span> apt-get update <span class="se">\</span>
<span class="o">&&</span> apt-get install -y <span class="se">\</span>
bison build-essential curl git libarchive-dev libbz2-ocaml-dev libcurl4-openssl-dev <span class="se">\</span>
libexpat1-dev libfaac-dev libmp3lame-dev libopencore-amrnb-dev libopencore-amrwb-dev <span class="se">\</span>
libqt5svg5-dev libqt5webkit5-dev libqt5xmlpatterns5-dev libtheora-dev libtiff5-dev <span class="se">\</span>
libvorbis-dev libvpx-dev libwrap0-dev libxi-dev libxmu-dev python-dev pkg-config <span class="se">\</span>
qt5-default qtscript5-dev qttools5-dev qttools5-dev-tools vim wget yasm libgtk2.0-dev
</pre></div>
<h2 id="install-mitk-in-the-container">Install <span class="caps">MITK</span> in the container<a class="headerlink" href="#install-mitk-in-the-container" title="Permanent link">¶</a></h2>
<p>Now on follow the installation instructions <a href="how_to_compile_mitk_on_ubuntu#other-dependencies">in this post</a>.</p>
<h2 id="build-mitk">Build <span class="caps">MITK</span><a class="headerlink" href="#build-mitk" title="Permanent link">¶</a></h2>
<div class="highlight"><pre><span></span>root@XXXXX:$ git clone http://git.mitk.org/MITK.git
root@XXXXX:$ mkdir MITK-build <span class="o">&&</span> <span class="nb">cd</span> MITK-build
root@XXXXX:$ ccmake ../MITK
</pre></div>
<p><img alt="MITK ccmake image" src="images/Docker_Ubuntu_15.04_ccmake_MITK_001.png"/></p>
<p><img alt="MITK ccmake image" src="images/Docker_Ubuntu_15.04_ccmake_MITK_002.png"/></p>
<ul>
<li><strong>Note:</strong> in Ubuntu:14.04 you <span class="caps">CAN</span>’T select the option ‘MITK_USE_Python’, because It needs Qt >= 5.3</li>
<li><strong>Tips:</strong><ul>
<li>For a complete installation, press ‘t’ to toggle the advance view. You may select all the options you desire, like compile with all applications and plugins.</li>
<li>Also, if you selected <code>MITK_USE_SYSTEM_PYTHON</code>, you may want to change <code>PYTHON_EXECUTABLE</code>,<code>PYTHON_INCLUDE_DIR</code> and <code>PYTHON_LIBRARY</code> to your respective installation. For now, It’s not possible to use Python 3, so you’ll have to use Python2.7.</li>
</ul>
</li>
</ul>
<div class="highlight"><pre><span></span><span class="c1"># Press 'c' to configure and 'g' to generate and exit.</span>
root@XXXXX:$ make
<span class="c1"># I do NOT recommend running `make` with the option `-j4`. You'll get dependency related errors during the build.</span>
<span class="c1"># This last command will take several hours, so go and take a walk (in another city) :)</span>
root@XXXXX:$ <span class="nb">exit</span>
$ docker ps -l
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
b378149da6c6 ubuntu:15.04 <span class="s2">"/bin/bash"</span> <span class="m">8</span> hours ago Exited <span class="o">(</span>0<span class="o">)</span> <span class="m">10</span> seconds ago focused_newton
$ docker commit <CONTAINER_NAME> ubuntu15/mitk:latest
<span class="c1"># See the CONTAINER_NAME on the right of `docker ps -l`</span>
</pre></div>
<h1 id="running-mitk">Running <span class="caps">MITK</span><a class="headerlink" href="#running-mitk" title="Permanent link">¶</a></h1>
<ol>
<li>Create a <a href="https://docs.docker.com/reference/builder/" target="_blank">Dockerfile</a>.:</li>
</ol>
<div class="highlight"><pre><span></span>FROM <IMAGE>
MAINTAINER <YOUR_NAME>
ENV MITK_WORKBENCH /path/to/MITK-build/bin/MitkWorkbench
CMD <span class="nv">$MITK_WORKBENCH</span>
</pre></div>
<ul>
<li>Where <code><IMAGE></code> is the name of the image where we have installed <span class="caps">MITK</span>.</li>
<li>e.g.: <span class="caps">FROM</span> ubuntu15/mitk:latest</li>
</ul>
<div class="highlight"><pre><span></span>$ docker images
REPOSITORY TAG IMAGE ID CREATED VIRTUAL SIZE
ubuntu15/mitk latest 19af721ab6a3 <span class="m">11</span> hours ago 13.2 GB
</pre></div>
<ol>
<li>Build a new image with the Dockerfile.:</li>
</ol>
<div class="highlight"><pre><span></span>$ docker build --rm -t mitk:15.04 .
$ docker images
REPOSITORY TAG IMAGE ID CREATED VIRTUAL SIZE
mitk 15.04 bdcce6cafa44 <span class="m">26</span> minutes ago 13.2 GB
$ docker ps -l
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
2f140ab82356 mitk:15.04 <span class="s2">"/bin/bash"</span> <span class="m">42</span> minutes ago Exited <span class="o">(</span>0<span class="o">)</span> <span class="m">41</span> minutes ago silly_galileo
$ xhost +local:<span class="sb">`</span>docker inspect --format<span class="o">=</span><span class="s1">'{{ .Config.Hostname }}'</span> <CONTAINER_ID><span class="sb">`</span>
$ docker run -ti --rm -e <span class="nv">DISPLAY</span><span class="o">=</span><span class="nv">$DISPLAY</span> -v /tmp/.X11-unix:/tmp/.X11-unix mitk:15.04
</pre></div>
<p><img alt="MITK load image" src="images/MitkWorkbench_002.png"/></p>
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<div class="last-updated">Luis Javier Salvatierra</div> <h4>Published</h4>
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