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<h1><a href="https://neurita.github.io/how_to_compile_mitk_on_ubuntu"> How to compile <span class="caps">MITK</span> on Ubuntu </a></h1>
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<h4>Contents</h4>
<div class="toc">
<ul>
<li><a href="#required-packages">Required packages</a></li>
<li><a href="#install-dependencies">Install dependencies</a></li>
<li><a href="#other-dependencies">Other dependencies</a><ul>
<li><a href="#install-opencl">Install OpenCL</a></li>
<li><a href="#build-cmake-330">Build Cmake 3.3.0</a></li>
<li><a href="#build-ffmpeg">Build FFmpeg</a></li>
<li><a href="#build-mitk">Build <span class="caps">MITK</span></a></li>
<li><a href="#build-boost-if-needed">Build Boost if needed</a></li>
<li><a href="#build-opencv-if-needed">Build OpenCV if needed</a></li>
<li><a href="#build-vtk-if-needed">Build <span class="caps">VTK</span> if needed</a></li>
<li><a href="#build-sofa-if-needed">Build <span class="caps">SOFA</span> if needed</a></li>
<li><a href="#build-gdcm-if-needed">Build <span class="caps">GDCM</span> if needed</a></li>
</ul>
</li>
<li><a href="#run-mitk">Run <span class="caps">MITK</span></a></li>
</ul>
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<div class="span8 article-content">
<h1 id="required-packages">Required packages<a class="headerlink" href="#required-packages" title="Permanent link">¶</a></h1>
<ul>
<li><span class="caps">GIT</span></li>
<li>CMake (version 3.2 or higher. Current stable 3.3)</li>
<li>Qt 5.x</li>
</ul>
<p><strong>Note:</strong> Make sure that you select a Qt version which provides the right <strong>OpenGL-enabled</strong> packages for your architecture and compiler.</p>
<h1 id="install-dependencies">Install dependencies<a class="headerlink" href="#install-dependencies" title="Permanent link">¶</a></h1>
<ul>
<li><strong>Option 1:</strong> Ubuntu 14.04</li>
</ul>
<div class="highlight"><pre><span></span>$ sudo apt-get update <span class="o">&&</span> sudo apt-get install -y <span class="se">\</span>
software-properties-common <span class="se">\</span>
<span class="o">&&</span> sudo apt-add-repository multiverse <span class="se">\</span>
<span class="o">&&</span> sudo apt-get update <span class="se">\</span>
<span class="o">&&</span> sudo apt-get install -y <span class="se">\</span>
bison build-essential curl git libarchive-dev libbz2-ocaml-dev libcurl4-openssl-dev <span class="se">\</span>
libexpat-ocaml-dev libfaac-dev libmp3lame-dev libopencore-amrnb-dev libopencore-amrwb-dev <span class="se">\</span>
libqt5svg5-dev libqt5webkit5-dev libqt5xmlpatterns5-dev libtheora-dev libtiff5-dev <span class="se">\</span>
libvorbis-dev libvpx-dev libwrap0-dev libxi-dev libxmu-dev pkg-config qt5-default <span class="se">\</span>
qtscript5-dev qttools5-dev qttools5-dev-tools vim wget yasm libgtk2.0-dev
</pre></div>
<ul>
<li><strong>Option 2:</strong> Ubuntu 15.04</li>
</ul>
<div class="highlight"><pre><span></span>$ sudo apt-get update <span class="o">&&</span> sudo apt-get install -y <span class="se">\</span>
software-properties-common <span class="se">\</span>
<span class="o">&&</span> sudo apt-add-repository multiverse <span class="se">\</span>
<span class="o">&&</span> sudo apt-get update <span class="se">\</span>
<span class="o">&&</span> sudo apt-get install -y <span class="se">\</span>
bison build-essential curl git libarchive-dev libbz2-ocaml-dev libcurl4-openssl-dev <span class="se">\</span>
libexpat1-dev libfaac-dev libmp3lame-dev libopencore-amrnb-dev libopencore-amrwb-dev <span class="se">\</span>
libqt5svg5-dev libqt5webkit5-dev libqt5xmlpatterns5-dev libtheora-dev libtiff5-dev <span class="se">\</span>
libvorbis-dev libvpx-dev libwrap0-dev libxi-dev libxmu-dev python-dev pkg-config <span class="se">\</span>
qt5-default qtscript5-dev qttools5-dev qttools5-dev-tools vim wget yasm libgtk2.0-dev
</pre></div>
<h1 id="other-dependencies">Other dependencies<a class="headerlink" href="#other-dependencies" title="Permanent link">¶</a></h1>
<h2 id="install-opencl">Install OpenCL<a class="headerlink" href="#install-opencl" title="Permanent link">¶</a></h2>
<div class="highlight"><pre><span></span><span class="c1"># OpenCL for Intel/AMD:</span>
$ sudo apt-get install ocl-icd-opencl-dev
<span class="c1"># OpenCL for Nvidia:</span>
$ sudo apt-get install nvidia-opencl-icd-XXX
<span class="c1"># Where XXX is the version. Current 346</span>
</pre></div>
<h2 id="build-cmake-330">Build Cmake 3.3.0<a class="headerlink" href="#build-cmake-330" title="Permanent link">¶</a></h2>
<div class="highlight"><pre><span></span>$ wget -c http://www.cmake.org/files/v3.3/cmake-3.3.0.tar.gz
$ tar xvzf cmake-3.3.0.tar.gz <span class="o">&&</span> <span class="nb">cd</span> cmake-3.3.0
$ ./bootstrap --prefix<span class="o">=</span>/usr --system-libs --mandir<span class="o">=</span>/share/man --no-system-jsoncpp <span class="se">\</span>
--docdir<span class="o">=</span>/share/doc/cmake-3.3.0 --qt-gui
$ make <span class="o">&&</span> sudo make install
</pre></div>
<h2 id="build-ffmpeg">Build FFmpeg<a class="headerlink" href="#build-ffmpeg" title="Permanent link">¶</a></h2>
<p>FFmpeg is required for OpenCV.</p>
<div class="highlight"><pre><span></span>$ git clone https://github.com/FFmpeg/FFmpeg.git
$ <span class="nb">cd</span> FFmpeg
$ ./configure --enable-gpl --enable-libfaac --enable-libmp3lame --enable-libopencore-amrnb <span class="se">\</span>
--enable-libopencore-amrwb --enable-libtheora --enable-libvorbis --enable-libvpx <span class="se">\</span>
--enable-nonfree --enable-version3 --enable-x11grab --enable-shared --enable-pic
$ make <span class="o">&&</span> sudo make install
</pre></div>
<h2 id="build-mitk">Build <span class="caps">MITK</span><a class="headerlink" href="#build-mitk" title="Permanent link">¶</a></h2>
<div class="highlight"><pre><span></span>$ git clone http://git.mitk.org/MITK.git
$ mkdir MITK-build <span class="o">&&</span> <span class="nb">cd</span> MITK-build
$ ccmake ../MITK
</pre></div>
<p><img alt="MITK ccmake image" src="images/Docker_Ubuntu_15.04_ccmake_MITK_001.png"/></p>
<p><img alt="MITK ccmake image" src="images/Docker_Ubuntu_15.04_ccmake_MITK_002.png"/></p>
<ul>
<li><strong>Note:</strong> in Ubuntu:14.04 you <span class="caps">CAN</span>’T select the option ‘MITK_USE_Python’, because It needs Qt >= 5.3</li>
<li><strong>Tips:</strong><ul>
<li>For a complete installation, press ‘t’ to toggle the advance view. You may select all the options you desire, like compile with all applications and plugins.</li>
<li>Also, if you selected <code>MITK_USE_SYSTEM_PYTHON</code>, you may want to change <code>PYTHON_EXECUTABLE</code>,<code>PYTHON_INCLUDE_DIR</code> and <code>PYTHON_LIBRARY</code> to your respective installation. For now, It’s not possible to use Python 3, so you’ll have to use Python2.7.</li>
</ul>
</li>
</ul>
<div class="highlight"><pre><span></span><span class="c1"># Press 'c' to configure and 'g' to generate and exit.</span>
$ make
<span class="c1"># I do NOT recommend running `make` with the option `-j4`. You'll get dependency related errors during the build.</span>
<span class="c1"># This last command will take several hours, so go and take a walk (in another city) :)</span>
</pre></div>
<p>If you encounter any problems building <span class="caps">MITK</span>, try building your self some of Its dependencies.:</p>
<h2 id="build-boost-if-needed">Build Boost if needed<a class="headerlink" href="#build-boost-if-needed" title="Permanent link">¶</a></h2>
<ul>
<li>Download Boost from the official webpage <a href="http://www.boost.org/" target="_blank">Boost C++ Libraries</a>.</li>
</ul>
<div class="highlight"><pre><span></span>$ tar --bzip2 -xf /path/to/boost_1_XX_X.tar.bz2 <span class="o">&&</span> <span class="nb">cd</span> boost_1_XX_X <span class="c1">#Current `boost_1_58_0`</span>
$ ./bootstrap.sh --prefix<span class="o">=</span>/usr/local --with-python<span class="o">=</span>/usr/bin/python2 <span class="c1">#It doesn't work with Python3</span>
$ mkdir ../boost-build
$ sudo ./b2 -q --build-dir<span class="o">=</span>../boost-build <span class="nv">variant</span><span class="o">=</span>release install
</pre></div>
<h2 id="build-opencv-if-needed">Build OpenCV if needed<a class="headerlink" href="#build-opencv-if-needed" title="Permanent link">¶</a></h2>
<div class="highlight"><pre><span></span>$ sudo apt-get install build-essential libgtk2.0-dev pkg-config libavcodec-dev libavformat-dev <span class="se">\</span>
libswscale-dev python-dev python-numpy libtbb2 libtbb-dev libjpeg-dev libpng-dev libtiff-dev <span class="se">\</span>
libjasper-dev libdc1394-22-dev
$ git clone [email protected]:Itseez/opencv.git
$ mkdir opencv-build <span class="o">&&</span> <span class="nb">cd</span> opencv-build
$ ccmake ../opencv
<span class="c1"># Press 'c' to configure and 'g' to generate and exit.</span>
$ make -j4
<span class="c1"># Where *4 is the number of CPU Threads.</span>
<span class="c1"># The last command will take several minutes to complete.</span>
$ sudo make install
</pre></div>
<h2 id="build-vtk-if-needed">Build <span class="caps">VTK</span> if needed<a class="headerlink" href="#build-vtk-if-needed" title="Permanent link">¶</a></h2>
<div class="highlight"><pre><span></span>$ sudo apt-get install tk-dev
$ git clone git://vtk.org/VTK.git
$ mkdir VTK-build <span class="o">&&</span> <span class="nb">cd</span> VTK-build
$ ccmake ../VTK
<span class="c1"># Press 'c' to configure and 'e' to continue.</span>
<span class="c1"># Select desired options.</span>
<span class="c1"># VTK_WRAP_PYTHON ON</span>
<span class="c1"># VTK_QT_VERSION 5</span>
<span class="c1"># ...</span>
<span class="c1"># Press again 'c' to configure and 'e' to continue.</span>
<span class="c1"># Press 'g' to generate and exit.</span>
$ make -j4
$ sudo make install
</pre></div>
<h2 id="build-sofa-if-needed">Build <span class="caps">SOFA</span> if needed<a class="headerlink" href="#build-sofa-if-needed" title="Permanent link">¶</a></h2>
<div class="highlight"><pre><span></span>$ git clone git://scm.gforge.inria.fr/sofa/sofa.git
$ sudo apt-get install build-essential libqt4-dev libqt4-opengl-dev libglew-dev freeglut3-dev <span class="se">\</span>
libpng-dev ccache zlib1g-dev python2.7-dev libxml2-dev libcgal-dev libblas-dev liblapack-dev <span class="se">\</span>
libsuitesparse-dev libboost-all-dev libassimp-dev liboce-foundation-dev
$ mkdir sofa-build <span class="o">&&</span> <span class="nb">cd</span> sofa-build
$ <span class="nv">CC</span><span class="o">=</span><span class="s2">"gcc"</span> <span class="nv">CXX</span><span class="o">=</span><span class="s2">"g++"</span> cmake -DCMAKE_BUILD_TYPE<span class="o">=</span>Release ../sofa
$ cmake .
$ make -j4
</pre></div>
<h2 id="build-gdcm-if-needed">Build <span class="caps">GDCM</span> if needed<a class="headerlink" href="#build-gdcm-if-needed" title="Permanent link">¶</a></h2>
<div class="highlight"><pre><span></span>$ sudo apt-get install swig
$ git clone --branch release git://git.code.sf.net/p/gdcm/gdcm
$ mdkir gdcm-build <span class="o">&&</span> <span class="nb">cd</span> gdcm-build
$ ccmake ../gdcm
<span class="c1"># Press 'c' to configure and 'g' to generate and exit.</span>
$ make
$ sudo make install
</pre></div>
<h1 id="run-mitk">Run <span class="caps">MITK</span><a class="headerlink" href="#run-mitk" title="Permanent link">¶</a></h1>
<div class="highlight"><pre><span></span>$ <span class="nb">cd</span> ~/Downloads <span class="o">&&</span> wget -c http://mitk.org/download/tutorial-data/Pic3D.nrrd
$ /path/to/MITK-build/bin/MitkWorkbench
</pre></div>
<p><img alt="MITK load image" src="images/MitkWorkbench_001.png"/></p>
<ul>
<li>Open the downloaded image in <code>~/Downloads</code></li>
</ul>
<p><img alt="MITK load image" src="images/MitkWorkbench_002.png"/></p>
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<h4>Author</h4>
<div class="last-updated">Luis Javier Salvatierra</div> <h4>Published</h4>
<time pubdate="pubdate" datetime="2015-08-13T00:00:00+02:00">Aug 13, 2015</time>
<h4>Last Updated</h4>
<time datetime="2015-09-02T00:00:00+02:00">Sep 2, 2015</time>
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