From 370e0c18211bdfb7847ac83a21074ef76a61adfa Mon Sep 17 00:00:00 2001 From: Nicole Thadani Date: Wed, 19 Apr 2023 16:25:07 -0400 Subject: [PATCH] rounded summary data columns to 7 decimal places --- .../summaries_with_scores/flu_h1_evescape.csv | 21470 +++---- .../flu_h1_evescape_sites.csv | 1130 +- .../full_spike_evescape.csv | 48374 ++++++++-------- .../full_spike_evescape_sites.csv | 2546 +- .../hiv_env_evescape.csv | 25460 ++++---- .../hiv_env_evescape_sites.csv | 1340 +- .../lassa_glycoprotein_evescape.csv | 18658 +++--- .../lassa_glycoprotein_evescape_sites.csv | 982 +- .../nipah_fusion_evescape.csv | 20748 +++---- .../nipah_fusion_evescape_sites.csv | 1092 +- .../nipah_glycoprotein_evescape.csv | 22876 ++++---- .../nipah_glycoprotein_evescape_sites.csv | 1204 +- .../spike_rbd_evescape.csv | 7638 +-- .../spike_rbd_evescape_sites.csv | 402 +- scripts/evescape_scores.py | 19 +- 15 files changed, 86970 insertions(+), 86969 deletions(-) diff --git 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EVEscape and aggregate/binarize experiments ############################################## @@ -122,6 +121,8 @@ def make_predictors(summary_init, thresh, ablist, scores=True): "charge_ew-hydro": "dissimilarity_charge_hydro" }) + summary = summary.round(decimals=7) + return (summary) @@ -137,7 +138,6 @@ def make_predictors(summary_init, thresh, ablist, scores=True): nipahg = make_predictors(nipahg, None, None, scores=False) nipahf = make_predictors(nipahf, None, None, scores=False) - rbd_all = rbd_bloom.rename( columns={ "max_escape_experiment": "max_escape_experiment_bloom", @@ -174,12 +174,14 @@ def make_predictors(summary_init, thresh, ablist, scores=True): index=False) spike.to_csv("../results/summaries_with_scores/full_spike_evescape.csv", index=False) -lassa.to_csv("../results/summaries_with_scores/lassa_glycoprotein_evescape.csv", - index=False) -nipahg.to_csv("../results/summaries_with_scores/nipah_glycoprotein_evescape.csv", - index=False) +lassa.to_csv( + "../results/summaries_with_scores/lassa_glycoprotein_evescape.csv", + index=False) +nipahg.to_csv( + "../results/summaries_with_scores/nipah_glycoprotein_evescape.csv", + index=False) nipahf.to_csv("../results/summaries_with_scores/nipah_fusion_evescape.csv", - index=False) + index=False) ############################################## @@ -188,7 +190,7 @@ def make_predictors(summary_init, thresh, ablist, scores=True): def make_site(summary_init): summary = summary_init.copy() - summary = summary.groupby(['i','wt']).agg('mean').reset_index() + summary = summary.groupby(['i', 'wt']).agg('mean').reset_index() return (summary) @@ -201,7 +203,6 @@ def make_site(summary_init): nipahg_site = make_site(nipahg) nipahf_site = make_site(nipahf) - flu_site.to_csv('../results/summaries_with_scores/flu_h1_evescape_sites.csv', index=False) hiv_site.to_csv('../results/summaries_with_scores/hiv_env_evescape_sites.csv',