Merge pull request #300 from ODM2/Beta_1.2.8

Beta 1.2.8

Author: Stephanie Reeder

ODMTools.py

@@ -20,7 +20,8 @@
 
 import pyodbc
 import pymysql
-import psycopg2
+#import psycopg2
+
 
 tool = LoggerTool()
 logger = tool.setupLogger('main',  'odmtools.log', 'a', logging.INFO)

README.md

@@ -11,42 +11,44 @@ If you want to try ODM Tools, we have created a couple of [testing databases](ht
 
 ##ODM Compatibility
 
-ODM Tools Python is currenlty fully compatible with ODM Version 1.1.1. We are working on ODM2 compatibility, and should have it worked out this summer.
+ODM Tools Python is currenlty fully compatible with ODM Version 1.1.1. We are working on ODM2 compatibility, and should have it worked out this winter.
 
 ##Releases
 
 To make running ODMTools easier we have included installers. Please select the one that is appropriate for your operating system
 
 ####Windows
 Recommended Release:
-+   [Window v1.2.5-beta](https://github.com/ODM2/ODMToolsPython/releases/download/v1.2.5_beta/ODMTools_1.2.5_Beta_Win_Installer.exe)
++   [Window v1.2.8-beta](https://github.com/ODM2/ODMToolsPython/releases/download/v1.2.8_beta/ODMTools_1.2.8_Beta_Win_Installer.exe)
 
 ####Mac
-+   [Mac v1.2.5-beta](https://github.com/ODM2/ODMToolsPython/releases/download/v1.2.5_beta/ODMTools_v1.2.5-beta_Mac_installer.pkg.zip)
++   [Mac v1.2.8-beta](https://github.com/ODM2/ODMToolsPython/releases/download/v1.2.8_beta/ODMTools_v1.2.8-beta_Mac_installer.pkg.zip)
 
 ####Linux
 +   *Please run from source*
 
 Running From Source
 -------------------
 
-+	[Matplotlib-1.4.3](https://github.com/matplotlib/matplotlib/releases/tag/v1.4.3)
-+	[Pandas-0.16.0](https://github.com/pydata/pandas/releases)
++	[Matplotlib](https://github.com/matplotlib/matplotlib/releases/)
++	[Pandas](https://github.com/pydata/pandas/releases)
 +	[Pip](http://docs.python-guide.org/en/latest/starting/install/win.html)
 +	[PyMySQL](https://github.com/petehunt/PyMySQL/)
-+	[Pyodbc-3.0.7](https://code.google.com/p/pyodbc/downloads/detail?name=pyodbc-3.0.7.win-amd64-py2.7.exe)
++	[Pyodbc](https://code.google.com/p/pyodbc/downloads/)
 +	[Python-2.7.9 x64/x32](http://www.python.org/download/releases/2.7.9/) (Python 3 version isn't available)
-+	[Psycopg2-2.4.6](http://initd.org/psycopg/docs/install.html)
-+	[Sqlalchemy-1.0.0] (http://pypi.python.org/pypi/SQLAlchemy/1.0.0)
-+	[wxpython-3.0.0](http://www.wxpython.org/download.php)
++	[Psycopg2](http://initd.org/psycopg/docs/install.html)
++	[Sqlalchemy] (http://pypi.python.org/pypi/SQLAlchemy/)
++	[wxpython](http://www.wxpython.org/download.php)
++	[Numpy](http://www.scipy.org/scipylib/download.html)
++	[Scipy](https://www.scipy.org/scipylib/download.html)
 
 Install the following software/libraries.
 It is recommended to create an environment using 'Conda'.
 'Conda' comes prepackaged in the Python Scientific Package Suite [Anaconda](http://continuum.io/downloads) (Available for Windows, OSX, Linux)
 
 Example environment creation:
 
-+   conda create -n odmtools python=2.7.8 wxpython matplotlib pandas pyodbc sqlalchemy pip psycopg2
++   conda create -n odmtools python=2.7.8 wxpython matplotlib pandas numpy scipy pyodbc sqlalchemy pip psycopg2
 
 +   pip install pymysql
 

doc/developer_docs/source/conf.py

@@ -55,9 +55,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = 'beta-v1.2.0'
+version = '1.2.8'
 # The full version, including alpha/beta/rc tags.
-release = 'beta-v1.2.0'
+release = 'beta-v1.2.8'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

doc/wxFormBuilder/frmFillGaps.fbp

@@ -3,6 +3,7 @@
 #
 from wx.lib.embeddedimage import PyEmbeddedImage
 
+
 _3d_graph = PyEmbeddedImage(
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     "dveyPHZl7/JYApEQBDEaJQ9nSBEEY1JHbR5a09ExaceQ1kg61aZD9A8ztpnptJPQaGKIcaJt"
@@ -1719,3 +1720,154 @@
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+
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+    "AOxm99VU2O0FAAAAAElFTkSuQmCC")
+

odmtools/common/icons/icons.py

@@ -0,0 +1,26 @@
+"""Subclass of dlgFill, which is generated by wxFormBuilder."""
+
+from odmtools.view import clsGapFill
+
+
+# Implementing dlgFill
+class frmGapFill(clsGapFill.dlgFill):
+    def __init__(self, parent, record_service):
+        self.record_service = record_service
+        clsGapFill.dlgFill.__init__(self, parent)
+
+    # Handlers for dlgFill events.
+    def onOKBtn(self, event):
+        #TODO add validation
+        gapvalue= self.txtGap.Value
+        gaptime = self.cbGap.Value
+        fillvalue = self.txtFill.Value
+        filltime= self.cbFill.Value
+
+        self.record_service.fill_gap(gap=[gapvalue, gaptime], fill=[fillvalue, filltime])
+        self.Close()
+
+    def OnCancelBtn(self, event):
+
+        self.Close()
+        self.Destroy()

odmtools/controller/frmGapFill.py

@@ -13,7 +13,10 @@ def OnBtnOKButton(self, event):
         Perform Drift Correction based on given input. Catch errors if the user enters something invalid
         """
         try:
-            self._record_service.drift_correction(float(self.txtFinalGapValue.GetValue()))
+            result = self._record_service.drift_correction(float(self.txtFinalGapValue.GetValue()))
+            if not result:
+                dial = wx.MessageDialog( None, "Linear drift can only be performed on one continuous data selection. \nPlease modify your selection and try again.", "Bad Input", wx.OK)
+                dial.ShowModal()
         except Exception as e:
             dial = wx.MessageDialog(None, "Unable to convert value to float %s" % e, "Bad Input",
                 wx.OK | wx.ICON_ERROR)

odmtools/controller/frmLinearDrift.py

@@ -459,13 +459,13 @@ def setFilter(self, site_code='', var_code='', advfilter=''):
         :return:
         """
         if site_code and var_code:
-            self.siteFilter = TextSearch(self.tblSeries, columns=self.tblSeries.columns[3:4],text=site_code)
-            self.variableFilter = TextSearch(self.tblSeries, columns=self.tblSeries.columns[6:7],text=var_code)
+            self.siteFilter = TextSearch(self.tblSeries, columns=self.tblSeries.columns[2:6],text=site_code)
+            self.variableFilter = TextSearch(self.tblSeries, columns=self.tblSeries.columns[3:8],text=var_code)
             self.tblSeries.SetFilter(Chain(self.siteFilter, self.variableFilter))
         elif site_code:
-            self.tblSeries.SetFilter(TextSearch(self.tblSeries, columns=self.tblSeries.columns[3:4], text=site_code))
+            self.tblSeries.SetFilter(TextSearch(self.tblSeries, columns=self.tblSeries.columns[2:6], text=site_code))
         elif var_code:
-            self.tblSeries.SetFilter(TextSearch(self.tblSeries, columns=self.tblSeries.columns[6:7], text=var_code))
+            self.tblSeries.SetFilter(TextSearch(self.tblSeries, columns=self.tblSeries.columns[3:8], text=var_code))
         elif advfilter:
             self.tblSeries.SetFilter(advfilter)
         else:
@@ -490,6 +490,14 @@ def onReadyToPlot(self, event):
         except Exception as e :
             object = self.tblSeries.GetSelectedObject()
 
+        self.drawPlot(object)
+        logger.debug("refreshing...")
+        self.Refresh()
+
+        logger.debug("Finish Plotting")
+
+    def drawPlot(self, object):
+
         if not self.tblSeries.IsChecked(object):
             Publisher.sendMessage("removePlot", seriesID=object.id)
             Publisher.sendMessage("updateCursor", deselectedObject=object)
@@ -499,12 +507,6 @@ def onReadyToPlot(self, event):
             self.pnlPlot.addPlot(self.memDB, object.id)
             Publisher.sendMessage("updateCursor", selectedObject=object)
 
-        logger.debug("refreshing...")
-        self.Refresh()
-
-        logger.debug("Finish Plotting")
-
-
         #from meliae import scanner
         #scanner.dump_all_objects("plot_plotting.dat")
 
@@ -527,6 +529,17 @@ def getSelectedObject(self, event):
                 #print "Updating Cursor", editingObject.id
                 Publisher.sendMessage("updateCursor", selectedObject=editingObject)
 
+    def onBtnClear(self, event):
+        logger.debug("Clearing all selected objects from Series Catalog")
+        chcklist = self.tblSeries.GetCheckedObjects()
+
+        self.tblSeries.RefreshObject(self.tblSeries.editingObject)
+        for c in chcklist:
+            self.tblSeries.SetCheckState(c, False)
+        Publisher.sendMessage("removeMultPlot", seriesIDs= chcklist)
+        Publisher.sendMessage("updateCursor", deselectedObject=object)
+            #self.drawPlot(c)
+        self.Refresh()
 
     def onReadyToEdit(self):
         """Choose a series to edit from the series selector