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2020-05-11 11:19:32,582 - WARNING - Configuration file not set (--config), using default: /home/user/Documents/Projects+/HistoQC-master/config.ini
2020-05-11 12:25:38,141 - WARNING - Configuration file not set (--config), using default: /home/user/Documents/Projects+/HistoQC-master/config.ini
2020-05-11 12:26:46,246 - WARNING - Configuration file not set (--config), using default: /home/user/Documents/Projects+/HistoQC-master/config.ini
2020-05-11 12:26:54,790 - WARNING - SS7534_1_10_1062352.svs - After BasicModule.finalProcessingArea NO tissue remains detectable! Downstream modules likely to be incorrect/fail
2020-05-11 12:26:54,858 - WARNING - SS7534_1_10_1062352.svs - HistogramModule.compareToTemplates NO tissue remains detectable in mask!
2020-05-11 12:26:55,309 - WARNING - SS7534_1_10_1062352.svs - After BrightContrastModule.getContrast: NO tissue detected, statistics are impossible to compute, defaulting to -100 !
2020-05-11 12:26:55,369 - WARNING - SS7534_1_10_1062352.svs - DeconvolutionModule.seperateStains: NO tissue remains detectable! Saving Black images
2020-05-15 10:45:34,852 - WARNING - Configuration file not set (--config), using default: /home/user/Documents/Projects+/HistoQC-master/config.ini
2020-05-15 10:45:43,044 - WARNING - SS7534_1_10_1062352.svs - After BasicModule.finalProcessingArea NO tissue remains detectable! Downstream modules likely to be incorrect/fail
2020-05-15 10:45:43,108 - WARNING - SS7534_1_10_1062352.svs - HistogramModule.compareToTemplates NO tissue remains detectable in mask!
2020-05-15 10:45:43,433 - WARNING - SS7534_1_10_1062352.svs - After BrightContrastModule.getContrast: NO tissue detected, statistics are impossible to compute, defaulting to -100 !
2020-05-15 10:45:43,488 - WARNING - SS7534_1_10_1062352.svs - DeconvolutionModule.seperateStains: NO tissue remains detectable! Saving Black images
2020-05-15 10:48:47,826 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_10_1062352.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'int' object has no attribute 'replace'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_10_1062352.svs', '<code object compareObjects at 0x7f44a70f9f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 108>')
2020-05-15 10:49:01,391 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'int' object has no attribute 'replace'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs', '<code object compareObjects at 0x7f44a70f9f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 108>')
2020-05-15 10:49:03,942 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'int' object has no attribute 'replace'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs', '<code object compareObjects at 0x7f44a70f9f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 108>')
2020-05-15 10:50:37,017 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_10_1062352.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'int' object has no attribute 'replace'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_10_1062352.svs', '<code object compareObjects at 0x7fabaa287f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 108>')
2020-05-15 10:50:50,597 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'int' object has no attribute 'replace'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs', '<code object compareObjects at 0x7fabaa287f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 108>')
2020-05-15 10:50:53,178 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'int' object has no attribute 'replace'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs', '<code object compareObjects at 0x7fabaa287f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 108>')
2020-05-15 11:11:48,377 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_10_1062352.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'int' object has no attribute 'replace'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_10_1062352.svs', '<code object compareObjects at 0x7f71dea51f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 108>')
2020-05-15 11:12:02,061 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'int' object has no attribute 'replace'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs', '<code object compareObjects at 0x7f71dea51f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 108>')
2020-05-15 11:12:04,624 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'int' object has no attribute 'replace'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs', '<code object compareObjects at 0x7f71dea51f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 108>')
2020-05-15 11:22:48,111 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'calc_group_props' is not defined", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs', '<code object compareObjects at 0x7f9a2fd3df60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 108>')
2020-05-15 11:37:35,671 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("module 'matplotlib.pyplot' has no attribute 'imsh'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs', '<code object compareObjects at 0x7f5f675ccf60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-15 12:00:08,050 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_4_1062346.svs - - Error analyzing file (skipping): <class 'FileNotFoundError'> File not found. ("The directory '/home/user/Documents/Projects+/HistoQC-master/histoqc_output_20200515-115920/SS7534_1_4_1062346.svs' does not exist", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_4_1062346.svs', '<code object saveThumbnails at 0x7f3376d47c90, file "/home/user/Documents/Projects+/HistoQC-master/SaveModule.py", line 39>')
2020-05-15 12:30:49,982 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_4_1062346.svs - - Error analyzing file (skipping): <class 'FileNotFoundError'> File not found. ("The directory '/home/user/Documents/Projects+/HistoQC-master/histoqc_output_20200515-123029/SS7534_1_4_1062346.svs' does not exist", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_4_1062346.svs', '<code object saveThumbnails at 0x7fbebb59bc90, file "/home/user/Documents/Projects+/HistoQC-master/SaveModule.py", line 39>')
2020-05-18 09:53:17,043 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_10_1062352.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('list indices must be integers or slices, not _RegionProperties', '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_10_1062352.svs', '<code object compareObjects at 0x7f5de63e6f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-18 09:53:20,273 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('list indices must be integers or slices, not _RegionProperties', '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs', '<code object compareObjects at 0x7f5de63e6f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-18 09:53:21,009 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('list indices must be integers or slices, not _RegionProperties', '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs', '<code object compareObjects at 0x7f5de63e6f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-18 09:54:31,117 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_10_1062352.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('too many values to unpack (expected 2)', '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_10_1062352.svs', '<code object compareObjects at 0x7fa8c4211f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-18 09:54:34,345 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('too many values to unpack (expected 2)', '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs', '<code object compareObjects at 0x7fa8c4211f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-18 09:54:35,086 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('too many values to unpack (expected 2)', '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_2_1062344.svs', '<code object compareObjects at 0x7fa8c4211f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-18 10:03:12,301 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_4_1062346.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'str' object has no attribute 'len'", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_4_1062346.svs', '<code object compareObjects at 0x7f9d790e4f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-18 10:32:34,155 - WARNING - SS7534_1_16_1062358.svs - After BasicModule.finalProcessingArea NO tissue remains detectable! Downstream modules likely to be incorrect/fail
2020-05-18 12:23:31,885 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'skimage' is not defined", '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs', '<code object compareObjects at 0x7f2a38301f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-18 12:25:38,528 - WARNING - Lossy conversion from int64 to uint8. Range [0, 2]. Convert image to uint8 prior to saving to suppress this warning.
2020-05-18 12:27:04,203 - WARNING - Lossy conversion from int64 to uint8. Range [0, 200]. Convert image to uint8 prior to saving to suppress this warning.
2020-05-18 12:46:05,928 - WARNING - Lossy conversion from float64 to uint8. Range [0, 1]. Convert image to uint8 prior to saving to suppress this warning.
2020-05-18 12:46:21,439 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('operands could not be broadcast together with shapes (853,3299,3) (2,79) ', '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_1_1062343.svs', '<code object compareObjects at 0x7f2bb196bf60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-18 12:49:02,634 - WARNING - Lossy conversion from float64 to uint8. Range [0, 1]. Convert image to uint8 prior to saving to suppress this warning.
2020-05-18 12:49:23,720 - WARNING - Lossy conversion from float64 to uint8. Range [0, 1]. Convert image to uint8 prior to saving to suppress this warning.
2020-05-18 12:58:26,623 - ERROR - /home/user/Documents/Projects+/HistoQC-master/SS7534_1_5_1062347.svs - - Error analyzing file (skipping): <class 'IndexError'> Sequence index out of range. ('list index out of range', '/home/user/Documents/Projects+/HistoQC-master/SS7534_1_5_1062347.svs', '<code object compareObjects at 0x7f180e797f60, file "/home/user/Documents/Projects+/HistoQC-master/MorphologyModule.py", line 109>')
2020-05-25 12:34:48,133 - WARNING - Configuration file not set (--config), using default: /home/user/Documents/Projects+/Philipp_MUG/HistoQC/config.ini
2020-05-25 12:50:42,742 - WARNING - Configuration file not set (--config), using default: /home/user/Documents/Projects+/Philipp_MUG/HistoQC/config.ini
2020-05-25 12:56:13,944 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'np' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs', '<code object compareObjects at 0x7f87dbf0af60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 12:56:22,674 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'np' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs', '<code object compareObjects at 0x7f87dbf0af60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 12:57:18,042 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'Image' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs', '<code object compareObjects at 0x7faa5859bf60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 12:57:27,108 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'Image' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs', '<code object compareObjects at 0x7faa5859bf60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 12:57:50,593 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'plt' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs', '<code object compareObjects at 0x7f70520e8f60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 12:57:59,643 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'plt' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs', '<code object compareObjects at 0x7f70520e8f60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 13:02:45,017 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'h_thresh' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs', '<code object compareObjects at 0x7fa38cf35f60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 13:02:53,768 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'h_thresh' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs', '<code object compareObjects at 0x7fa38cf35f60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 13:11:46,255 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('calc_sim_surf() takes 3 positional arguments but 4 were given', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs', '<code object compareObjects at 0x7fa2a9336f60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 13:11:55,026 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('calc_sim_surf() takes 3 positional arguments but 4 were given', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs', '<code object compareObjects at 0x7fa2a9336f60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 13:12:09,783 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'IndexError'> Sequence index out of range. ('GridSpec slice would result in no space allocated for subplot', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs', '<code object compareObjects at 0x7f674e2b2f60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 13:12:18,625 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs - - Error analyzing file (skipping): <class 'IndexError'> Sequence index out of range. ('GridSpec slice would result in no space allocated for subplot', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs', '<code object compareObjects at 0x7f674e2b2f60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 13:13:57,810 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'os' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_6_1062348.svs', '<code object compareObjects at 0x7f7fdcafff60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-25 13:14:20,569 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'os' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SS7534_1_8_1062350.svs', '<code object compareObjects at 0x7f7fdcafff60, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-05-29 10:35:47,852 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'plt' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs', '<code object __init__ at 0x7fe83fe54ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 48>')
2020-05-29 10:35:53,502 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'plt' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs', '<code object __init__ at 0x7fe83fe54ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 48>')
2020-06-02 09:38:05,861 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('slice indices must be integers or None or have an __index__ method', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs', '<code object __init__ at 0x7f18d1253ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-02 09:38:12,075 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('slice indices must be integers or None or have an __index__ method', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs', '<code object __init__ at 0x7f18d1253ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-02 09:44:29,180 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs - - Error analyzing file (skipping): <class 'IndexError'> Sequence index out of range. ('list index out of range', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs', '<code object compareObjects at 0x7f9854a32ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-06-02 09:50:47,342 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs - - Error analyzing file (skipping): <class 'IndexError'> Sequence index out of range. ('list index out of range', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs', '<code object compareObjects at 0x7f6512ad1ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-06-02 09:52:02,209 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs - - Error analyzing file (skipping): <class 'UnboundLocalError'> Local name referenced but not bound to a value. ("local variable 'output' referenced before assignment", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs', '<code object saveThumbnails at 0x7f6512a80b70, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SaveModule.py", line 39>')
2020-06-02 10:00:31,736 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs - - Error analyzing file (skipping): <class 'IndexError'> Sequence index out of range. ('list index out of range', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs', '<code object compareObjects at 0x7faeb47dfae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-06-02 10:01:45,817 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs - - Error analyzing file (skipping): <class 'UnboundLocalError'> Local name referenced but not bound to a value. ("local variable 'output' referenced before assignment", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs', '<code object saveThumbnails at 0x7faeb39f5b70, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SaveModule.py", line 39>')
2020-06-02 10:05:28,013 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs - - Error analyzing file (skipping): <class 'UnboundLocalError'> Local name referenced but not bound to a value. ("local variable 'output' referenced before assignment", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs', '<code object saveThumbnails at 0x7f2d6bafeb70, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SaveModule.py", line 39>')
2020-06-02 10:06:31,537 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs - - Error analyzing file (skipping): <class 'UnboundLocalError'> Local name referenced but not bound to a value. ("local variable 'output' referenced before assignment", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs', '<code object saveThumbnails at 0x7f2d6bafeb70, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/SaveModule.py", line 39>')
2020-06-02 10:30:46,963 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'self' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs', '<code object __init__ at 0x7fb3c20a5ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-02 10:30:52,982 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'self' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs', '<code object __init__ at 0x7fb3c20a5ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-02 10:31:25,910 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'helper' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs', '<code object __init__ at 0x7f2cd2cbeae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-02 10:31:31,257 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'helper' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs', '<code object __init__ at 0x7f2cd2cbeae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-02 10:31:51,489 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'key' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs', '<code object __init__ at 0x7fa4f48b8ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-02 10:31:57,674 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'key' is not defined", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/2.mrxs', '<code object __init__ at 0x7fa4f48b8ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-02 10:33:13,824 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs - - Error analyzing file (skipping): <class 'IndexError'> Sequence index out of range. ('list index out of range', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/1.mrxs', '<code object compareObjects at 0x7fa56d6b2b70, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/MorphologyModule.py", line 110>')
2020-06-03 10:24:26,031 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('meta_info_dict', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs', '<code object __init__ at 0x7fb121ee4ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-03 10:25:28,615 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('meta_info_dict', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs', '<code object __init__ at 0x7f58a7246ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-03 10:27:47,303 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('meta_info_dict', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs', '<code object __init__ at 0x7fa2e7614ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-03 11:25:10,339 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('str() argument 2 must be str, not int', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs', '<code object __init__ at 0x7f4a253efae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-03 11:25:22,724 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_20S_1_1562240310.mrxs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('str() argument 2 must be str, not int', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_20S_1_1562240310.mrxs', '<code object __init__ at 0x7f4a253efae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-03 12:20:16,437 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('meta_info_dict', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs', '<code object __init__ at 0x7fcf23d67ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-03 12:56:16,998 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('meta_info_dict', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs', '<code object __init__ at 0x7f06c7258ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-03 12:56:27,543 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_20S_1_1562240310.mrxs - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('meta_info_dict', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_20S_1_1562240310.mrxs', '<code object __init__ at 0x7f06c7258ae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-08 12:22:39,793 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'OpenSlide' object has no attribute 'identifier'", '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_19S_1_1562240010.mrxs', '<code object __init__ at 0x7f71bd08cae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2020-06-08 12:22:44,132 - ERROR - /home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_20S_1_1562240310.mrxs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('all the input arrays must have same number of dimensions', '/home/user/Documents/Projects+/Philipp_MUG/HistoQC/DigitalSlide_B4M_20S_1_1562240310.mrxs', '<code object __init__ at 0x7f71bd08cae0, file "/home/user/Documents/Projects+/Philipp_MUG/HistoQC/BaseImage.py", line 49>')
2021-03-13 19:56:05,020 - WARNING - Configuration file not set (--config), using default: C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC/config.ini
2021-03-13 19:58:22,731 - WARNING - Configuration file not set (--config), using default: C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC/config.ini
2021-03-13 20:13:15,241 - ERROR - <code object __init__ at 0x000001EDDDBA0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object __init__ at 0x000001EDDDBA0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-13 20:13:15,952 - ERROR - <code object __init__ at 0x000001EDDDBA0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object __init__ at 0x000001EDDDBA0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-13 20:13:17,057 - ERROR - <code object __init__ at 0x000001EDDDBA0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object __init__ at 0x000001EDDDBA0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-13 20:13:18,793 - ERROR - <code object __init__ at 0x000001EDDDBA0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object __init__ at 0x000001EDDDBA0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-13 20:13:20,507 - ERROR - <code object __init__ at 0x000001EDDDBA0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object __init__ at 0x000001EDDDBA0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-13 20:17:50,557 - ERROR - <code object __init__ at 0x00000258D1230420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object __init__ at 0x00000258D1230420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-13 20:17:51,243 - ERROR - <code object __init__ at 0x00000258D1230420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object __init__ at 0x00000258D1230420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-13 20:17:52,331 - ERROR - <code object __init__ at 0x00000258D1230420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object __init__ at 0x00000258D1230420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-13 20:17:53,981 - ERROR - <code object __init__ at 0x00000258D1230420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object __init__ at 0x00000258D1230420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-13 20:17:55,609 - ERROR - <code object __init__ at 0x00000258D1230420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object __init__ at 0x00000258D1230420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:07:37,171 - ERROR - <code object __init__ at 0x0000018ECD0E0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object __init__ at 0x0000018ECD0E0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:07:37,846 - ERROR - <code object __init__ at 0x0000018ECD0E0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object __init__ at 0x0000018ECD0E0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:07:38,941 - ERROR - <code object __init__ at 0x0000018ECD0E0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object __init__ at 0x0000018ECD0E0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:07:40,678 - ERROR - <code object __init__ at 0x0000018ECD0E0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object __init__ at 0x0000018ECD0E0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:07:42,372 - ERROR - <code object __init__ at 0x0000018ECD0E0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object __init__ at 0x0000018ECD0E0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:15:52,937 - ERROR - <code object __init__ at 0x00000232861AD540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object __init__ at 0x00000232861AD540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:15:53,602 - ERROR - <code object __init__ at 0x00000232861AD540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object __init__ at 0x00000232861AD540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:15:54,642 - ERROR - <code object __init__ at 0x00000232861AD540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object __init__ at 0x00000232861AD540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:15:56,220 - ERROR - <code object __init__ at 0x00000232861AD540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object __init__ at 0x00000232861AD540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:15:57,769 - ERROR - <code object __init__ at 0x00000232861AD540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object __init__ at 0x00000232861AD540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:16:22,342 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs - - Error analyzing file (skipping): <class 'UnboundLocalError'> Local name referenced but not bound to a value. ("local variable 'osh' referenced before assignment", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object __init__ at 0x000001ADD132D540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:16:22,362 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\01CO002-11c17768-ed76-4020-8551-80ddaf.svs - - Error analyzing file (skipping): <class 'UnboundLocalError'> Local name referenced but not bound to a value. ("local variable 'osh' referenced before assignment", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object __init__ at 0x000001ADD132D540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:16:22,390 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs - - Error analyzing file (skipping): <class 'UnboundLocalError'> Local name referenced but not bound to a value. ("local variable 'osh' referenced before assignment", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object __init__ at 0x000001ADD132D540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:16:22,413 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\01CO005-59891744-2db3-4541-a86a-7f911f.svs - - Error analyzing file (skipping): <class 'UnboundLocalError'> Local name referenced but not bound to a value. ("local variable 'osh' referenced before assignment", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object __init__ at 0x000001ADD132D540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:16:22,434 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\01CO005-900134d7-7100-4189-aa08-f3b009.svs - - Error analyzing file (skipping): <class 'UnboundLocalError'> Local name referenced but not bound to a value. ("local variable 'osh' referenced before assignment", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object __init__ at 0x000001ADD132D540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:17:06,909 - ERROR - <code object __init__ at 0x0000023070BED540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object __init__ at 0x0000023070BED540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:17:07,579 - ERROR - <code object __init__ at 0x0000023070BED540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object __init__ at 0x0000023070BED540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:17:08,613 - ERROR - <code object __init__ at 0x0000023070BED540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object __init__ at 0x0000023070BED540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:17:10,192 - ERROR - <code object __init__ at 0x0000023070BED540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object __init__ at 0x0000023070BED540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:17:11,739 - ERROR - <code object __init__ at 0x0000023070BED540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object __init__ at 0x0000023070BED540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:18:02,721 - ERROR - <code object __init__ at 0x000001886942E540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object __init__ at 0x000001886942E540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:18:03,407 - ERROR - <code object __init__ at 0x000001886942E540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object __init__ at 0x000001886942E540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:18:04,450 - ERROR - <code object __init__ at 0x000001886942E540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object __init__ at 0x000001886942E540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:18:06,011 - ERROR - <code object __init__ at 0x000001886942E540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object __init__ at 0x000001886942E540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:18:07,653 - ERROR - <code object __init__ at 0x000001886942E540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object __init__ at 0x000001886942E540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:19:47,493 - ERROR - <code object __init__ at 0x0000013FA68C0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object __init__ at 0x0000013FA68C0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:19:48,130 - ERROR - <code object __init__ at 0x0000013FA68C0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object __init__ at 0x0000013FA68C0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:19:49,122 - ERROR - <code object __init__ at 0x0000013FA68C0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object __init__ at 0x0000013FA68C0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:19:49,556 - ERROR - <code object __init__ at 0x0000013FA68C0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object __init__ at 0x0000013FA68C0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:19:49,981 - ERROR - <code object __init__ at 0x0000013FA68C0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object __init__ at 0x0000013FA68C0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:21:50,371 - ERROR - <code object __init__ at 0x0000020F09370420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object __init__ at 0x0000020F09370420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:21:51,016 - ERROR - <code object __init__ at 0x0000020F09370420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object __init__ at 0x0000020F09370420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:21:52,013 - ERROR - <code object __init__ at 0x0000020F09370420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object __init__ at 0x0000020F09370420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:21:52,439 - ERROR - <code object __init__ at 0x0000020F09370420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object __init__ at 0x0000020F09370420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:21:52,872 - ERROR - <code object __init__ at 0x0000020F09370420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object __init__ at 0x0000020F09370420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:21:53,533 - ERROR - <code object __init__ at 0x0000020F09370420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x0000020F09370420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:21:54,148 - ERROR - <code object __init__ at 0x0000020F09370420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-29-1704-02A-01-BS1.9f55e6af-eb38-4346-a710-80d4b69ca95b.svs', '<code object __init__ at 0x0000020F09370420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:21:54,593 - ERROR - <code object __init__ at 0x0000020F09370420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-AW-A1PO-01A-01-TSA.5340cd5f-f6d0-4789-905b-55ae39f3912d.svs', '<code object __init__ at 0x0000020F09370420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:21:56,034 - ERROR - <code object __init__ at 0x0000020F09370420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-DH-A7UU-01A-01-TS1.20214A89-5C15-4792-ACD1-C3A651A2B821.svs', '<code object __init__ at 0x0000020F09370420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:22:18,888 - ERROR - <code object __init__ at 0x000001CF72CD0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object __init__ at 0x000001CF72CD0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:22:19,522 - ERROR - <code object __init__ at 0x000001CF72CD0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object __init__ at 0x000001CF72CD0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:22:20,511 - ERROR - <code object __init__ at 0x000001CF72CD0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object __init__ at 0x000001CF72CD0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:22:20,944 - ERROR - <code object __init__ at 0x000001CF72CD0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object __init__ at 0x000001CF72CD0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:22:21,365 - ERROR - <code object __init__ at 0x000001CF72CD0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object __init__ at 0x000001CF72CD0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:22:22,024 - ERROR - <code object __init__ at 0x000001CF72CD0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x000001CF72CD0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:22:22,623 - ERROR - <code object __init__ at 0x000001CF72CD0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-29-1704-02A-01-BS1.9f55e6af-eb38-4346-a710-80d4b69ca95b.svs', '<code object __init__ at 0x000001CF72CD0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:22:23,065 - ERROR - <code object __init__ at 0x000001CF72CD0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-AW-A1PO-01A-01-TSA.5340cd5f-f6d0-4789-905b-55ae39f3912d.svs', '<code object __init__ at 0x000001CF72CD0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:22:24,513 - ERROR - <code object __init__ at 0x000001CF72CD0420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-DH-A7UU-01A-01-TS1.20214A89-5C15-4792-ACD1-C3A651A2B821.svs', '<code object __init__ at 0x000001CF72CD0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:23:24,922 - ERROR - <code object __init__ at 0x00000237CCA40420, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x00000237CCA40420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:24:39,809 - ERROR - <code object __init__ at 0x0000020899E8E540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x0000020899E8E540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:25:11,868 - ERROR - <code object __init__ at 0x000002A3C5DFE540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x000002A3C5DFE540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:25:43,281 - ERROR - <code object __init__ at 0x000002AB2051E540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x000002AB2051E540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:26:52,058 - ERROR - <code object __init__ at 0x000002158C43E540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x000002158C43E540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:27:34,388 - ERROR - <code object __init__ at 0x0000022A975DF540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x0000022A975DF540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 14:28:26,402 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_holes() got an unexpected keyword argument 'min_size'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object fillSmallHoles at 0x0000022A86E7ED20, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 85>')
2021-03-14 14:31:57,598 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_objects() got an unexpected keyword argument 'area_threshold'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO001-760f15d2-444c-4deb-b133-62f3ca.svs', '<code object removeSmallObjects at 0x0000027BDA408C90, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 16>')
2021-03-14 14:31:58,873 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\01CO002-11c17768-ed76-4020-8551-80ddaf.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_objects() got an unexpected keyword argument 'area_threshold'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO002-11c17768-ed76-4020-8551-80ddaf.svs', '<code object removeSmallObjects at 0x0000027BDA408C90, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 16>')
2021-03-14 14:32:00,861 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_objects() got an unexpected keyword argument 'area_threshold'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-05a33362-82bb-48ac-8feb-ad2ea1.svs', '<code object removeSmallObjects at 0x0000027BDA408C90, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 16>')
2021-03-14 14:32:04,127 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\01CO005-59891744-2db3-4541-a86a-7f911f.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_objects() got an unexpected keyword argument 'area_threshold'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-59891744-2db3-4541-a86a-7f911f.svs', '<code object removeSmallObjects at 0x0000027BDA408C90, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 16>')
2021-03-14 14:32:07,629 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\01CO005-900134d7-7100-4189-aa08-f3b009.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_objects() got an unexpected keyword argument 'area_threshold'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\01CO005-900134d7-7100-4189-aa08-f3b009.svs', '<code object removeSmallObjects at 0x0000027BDA408C90, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 16>')
2021-03-14 14:32:09,208 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_objects() got an unexpected keyword argument 'area_threshold'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object removeSmallObjects at 0x0000027BDA408C90, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 16>')
2021-03-14 14:32:10,722 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-29-1704-02A-01-BS1.9f55e6af-eb38-4346-a710-80d4b69ca95b.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_objects() got an unexpected keyword argument 'area_threshold'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-29-1704-02A-01-BS1.9f55e6af-eb38-4346-a710-80d4b69ca95b.svs', '<code object removeSmallObjects at 0x0000027BDA408C90, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 16>')
2021-03-14 14:32:13,746 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-AW-A1PO-01A-01-TSA.5340cd5f-f6d0-4789-905b-55ae39f3912d.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_objects() got an unexpected keyword argument 'area_threshold'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-AW-A1PO-01A-01-TSA.5340cd5f-f6d0-4789-905b-55ae39f3912d.svs', '<code object removeSmallObjects at 0x0000027BDA408C90, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 16>')
2021-03-14 14:32:16,631 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-DH-A7UU-01A-01-TS1.20214A89-5C15-4792-ACD1-C3A651A2B821.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_objects() got an unexpected keyword argument 'area_threshold'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-DH-A7UU-01A-01-TS1.20214A89-5C15-4792-ACD1-C3A651A2B821.svs', '<code object removeSmallObjects at 0x0000027BDA408C90, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 16>')
2021-03-14 14:32:27,603 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("remove_small_objects() got an unexpected keyword argument 'area_threshold'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object removeSmallObjects at 0x000001F2B6A08C90, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 16>')
2021-03-14 14:37:11,577 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('scan.identifier', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object renameFolder at 0x000002C5EAAC9420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 99>')
2021-03-14 16:31:46,051 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'OpenSlide' object has no attribute 'keys'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x000002531240D540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 17:48:22,719 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'BaseImage' object has no attribute 'add_aperio_meta_info'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x0000012E59A3D540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 17:53:12,626 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'BaseImage' object has no attribute 'add_aperio_meta_info'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x0000020E8ED5D540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 17:54:14,172 - ERROR - <code object __init__ at 0x000001F7C85AD540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x000001F7C85AD540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 17:57:49,893 - ERROR - <code object __init__ at 0x0000013B2B2FE540, file "C:\Users\phili\Desktop\Uni\Master_Thesis\HistoQC\BaseImage.py", line 51> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object __init__ at 0x0000013B2B2FE540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 18:33:16,019 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('list indices must be integers or slices, not RegionProperties', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object getObjectData at 0x0000029AFC369030, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 109>')
2021-03-14 18:46:20,616 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('scan.tissue_part_1', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object getObjectData at 0x0000024FF64A9030, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 109>')
2021-03-14 18:47:47,451 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('scan.tissue_part_1', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object getObjectData at 0x00000162F729A030, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 109>')
2021-03-14 18:48:44,141 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('Object of type int32 is not JSON serializable', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x000001B4150764B0, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 18:50:40,572 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'dict' object has no attribute 'area'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object getObjectData at 0x000002387CC99030, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 109>')
2021-03-14 18:53:58,998 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'dict' object has no attribute 'area'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object getObjectData at 0x000001F9B20BA030, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 109>')
2021-03-14 18:54:37,486 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'dict' object has no attribute 'area'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object getObjectData at 0x0000025312D3EF60, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 109>')
2021-03-14 18:57:59,289 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'dict' object has no attribute 'area'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object getObjectData at 0x000001E0EF7DEF60, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 109>')
2021-03-14 19:01:41,003 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('Object of type int32 is not JSON serializable', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x00000258C7616420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 19:03:46,649 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('scan.tissue_part_1', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object getObjectData at 0x0000026834B6FF60, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 109>')
2021-03-14 19:04:29,677 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('Object of type int32 is not JSON serializable', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x000001D8A3416420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 19:05:46,389 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('Object of type int32 is not JSON serializable', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x00000217C57654B0, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 19:09:29,709 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('Object of type int32 is not JSON serializable', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x0000018BDC7464B0, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 19:11:48,714 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('can only concatenate str (not "int") to str', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object getObjectData at 0x00000227FA8BFF60, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 109>')
2021-03-14 19:14:02,519 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("int() argument must be a string, a bytes-like object or a number, not 'tuple'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object getObjectData at 0x0000016E6510FF60, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\MorphologyModule.py", line 109>')
2021-03-14 19:16:44,884 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('Object of type ndarray is not JSON serializable', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x00000208478A9540, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 19:30:05,793 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('Object of type slice is not JSON serializable', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x0000021C24EF64B0, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 19:35:11,324 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('isinstance() arg 2 must be a type or tuple of types', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x000001F42CFE54B0, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 19:40:43,758 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'slice' object has no attribute 'tolist'", 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x00000157DEC964B0, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 19:44:41,830 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('Object of type slice is not JSON serializable', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x00000268ED6864B0, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 19:45:37,204 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('Object of type slice is not JSON serializable', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1.svs', '<code object saveJson at 0x000001F8BA0A64B0, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\SaveModule.py", line 70>')
2021-03-14 20:14:01,152 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1 - - Error analyzing file (skipping): <class 'openslide.lowlevel.OpenSlideUnsupportedFormatError'> OpenSlide does not support the requested file. Import this from openslide rather than from openslide.lowlevel. ('Unsupported or missing image file', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data\\TCGA-06-0154-01A-03-BS3.18993f79-353a-4c29-8b92-011dee7e8df1', '<code object __init__ at 0x00000213427D0420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 20:14:01,153 - ERROR - Die Syntax für den Dateinamen, Verzeichnisnamen oder die Datenträgerbezeichnung ist falsch - - Error analyzing file (skipping): <class 'OSError'> Base class for I/O related errors. [WinError 123] Die Syntax für den Dateinamen, Verzeichnisnamen oder die Datenträgerbezeichnung ist falsch: './histoqc_output_20210314-201401\\*svs'
2021-03-14 20:14:16,353 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data - - Error analyzing file (skipping): <class 'openslide.lowlevel.OpenSlideUnsupportedFormatError'> OpenSlide does not support the requested file. Import this from openslide rather than from openslide.lowlevel. ('Unsupported or missing image file', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data', '<code object __init__ at 0x000001AE3FB40420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 20:14:16,354 - ERROR - Die Syntax für den Dateinamen, Verzeichnisnamen oder die Datenträgerbezeichnung ist falsch - - Error analyzing file (skipping): <class 'OSError'> Base class for I/O related errors. [WinError 123] Die Syntax für den Dateinamen, Verzeichnisnamen oder die Datenträgerbezeichnung ist falsch: './histoqc_output_20210314-201416\\*svs'
2021-03-14 20:14:28,668 - ERROR - C:\Users\phili\Desktop\Uni\Master_Thesis\sample_data - - Error analyzing file (skipping): <class 'openslide.lowlevel.OpenSlideUnsupportedFormatError'> OpenSlide does not support the requested file. Import this from openslide rather than from openslide.lowlevel. ('Unsupported or missing image file', 'C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\sample_data', '<code object __init__ at 0x000002A67FF00420, file "C:\\Users\\phili\\Desktop\\Uni\\Master_Thesis\\HistoQC\\BaseImage.py", line 51>')
2021-03-14 20:14:28,669 - ERROR - Die Syntax für den Dateinamen, Verzeichnisnamen oder die Datenträgerbezeichnung ist falsch - - Error analyzing file (skipping): <class 'OSError'> Base class for I/O related errors. [WinError 123] Die Syntax für den Dateinamen, Verzeichnisnamen oder die Datenträgerbezeichnung ist falsch: './histoqc_output_20210314-201428\\*svs'
2021-03-15 17:54:54,224 - ERROR - /home/user/Documents/Master/Data/gdc_download_20210315_162432.088639/4fd0f148-7ca7-4d9c-8571-77a6c11df22f/TCGA-BG-A0VX-01A-01-MS1.a9f524cf-2ac3-40fb-8d24-61224aea7dc6.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'measure' is not defined", '/home/user/Documents/Master/Data/gdc_download_20210315_162432.088639/4fd0f148-7ca7-4d9c-8571-77a6c11df22f/TCGA-BG-A0VX-01A-01-MS1.a9f524cf-2ac3-40fb-8d24-61224aea7dc6.svs', '<code object getObjectData at 0x7ff487eecd20, file "/home/user/Documents/Master/HistoQC/SaveTissuesModule.py", line 45>')
2021-03-15 17:59:50,063 - ERROR - <code object saveThumbnails at 0x7f105cb5d540, file "/home/user/Documents/Master/HistoQC/SaveModule.py", line 40> - - Error analyzing file (skipping): <class 'KeyError'> Mapping key not found. ('/home/user/Documents/Master/Data/gdc_download_20210315_162432.088639/TCGA-DB-A4XB-01Z-00-DX1.FBF60AEC-EF2E-4771-A46C-7ABF60C99D9C.svs', '<code object saveThumbnails at 0x7f105cb5d540, file "/home/user/Documents/Master/HistoQC/SaveModule.py", line 40>')
2021-03-15 17:59:55,250 - WARNING - TCGA-DH-A7UU-01A-01-TS1.20214A89-5C15-4792-ACD1-C3A651A2B821.svs - After BasicModule.finalProcessingArea NO tissue remains detectable! Downstream modules likely to be incorrect/fail
2021-11-12 09:55:57,702 - WARNING - Configuration file not set (--config), using default: /home/user/Documents/Master/HistoQC/config.ini
2021-11-12 09:58:54,508 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'logging' is not defined", '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7fab08187150, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 3>')
2021-11-12 10:01:48,170 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'ptl' is not defined", '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7faca49c8150, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 5>')
2021-11-12 10:18:09,312 - ERROR - one.svs - Similarity check aborted: Too many tissue parts: 0
2021-11-12 10:23:48,931 - ERROR - one.svs - Similarity check aborted: Too many tissue parts: 0
2021-11-12 10:24:23,577 - ERROR - one.svs - Similarity check aborted: Too many tissue parts: 2
2021-11-12 10:31:47,491 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'IndexError'> Sequence index out of range. ('only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f108f8d2150, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 5>')
2021-11-12 10:38:49,640 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'IndexError'> Sequence index out of range. ('index 2805 is out of bounds for axis 0 with size 853', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7fa5a8cb3150, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 5>')
2021-11-12 10:43:00,845 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'numpy.ndarray' object has no attribute 'crop'", '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f92f4dc2150, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 5>')
2021-11-12 11:05:05,124 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("Expected Ptr<cv::UMat> for argument 'image'", '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7fcc01ab6f60, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 23>')
2021-11-12 11:23:42,953 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("module 'cv2.cv2' has no attribute 'xfeatures2d'", '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f8ddb40af60, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 44>')
2021-11-12 11:24:07,487 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("drawMatchesKnn() missing required argument 'outImg' (pos 6)", '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f1bca4d2f60, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 44>')
2021-11-12 11:55:46,224 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'numpy.ndarray' object has no attribute 'dim'", '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7fbc820e3030, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 47>')
2021-11-12 11:55:59,770 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('int() base must be >= 2 and <= 36, or 0', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f813797d030, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 47>')
2021-11-12 11:57:10,920 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('int() base must be >= 2 and <= 36, or 0', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7feab39bd030, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 49>')
2021-11-12 11:58:01,015 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('int() base must be >= 2 and <= 36, or 0', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f7e47181030, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 50>')
2021-11-12 13:15:09,497 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('zero-size array to reduction operation minimum which has no identity', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f027aafe030, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 56>')
2021-11-12 13:17:34,657 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('zero-size array to reduction operation minimum which has no identity', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f1b9e6f1030, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 56>')
2021-11-12 13:33:01,754 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'int' object has no attribute 'coords'", '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7fbc1afeaf60, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 59>')
2021-11-12 13:36:55,876 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('zero-size array to reduction operation minimum which has no identity', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f5dcd0c1f60, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 59>')
2021-11-12 13:38:14,828 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('zero-size array to reduction operation minimum which has no identity', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f8d6d1dcf60, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 59>')
2021-11-12 13:40:40,716 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('zero-size array to reduction operation minimum which has no identity', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f3c55406f60, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 61>')
2021-11-12 13:41:58,677 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('zero-size array to reduction operation minimum which has no identity', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7f08c1827f60, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 61>')
2021-11-12 13:44:41,318 - ERROR - /home/user/Documents/Master/data/one/one.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('zero-size array to reduction operation minimum which has no identity', '/home/user/Documents/Master/data/one/one.svs', '<code object checkSimilarity at 0x7fc7f7f53f60, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 61>')
2021-11-16 08:47:02,562 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'RegionProperties' object has no attribute 'cen'", '/home/user/Documents/Master/svs_base/SS7534_1_6_1062348.svs', '<code object checkSimilarity at 0x7f5caa501030, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 57>')
2021-11-16 08:47:49,412 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('slice indices must be integers or None or have an __index__ method', '/home/user/Documents/Master/svs_base/SS7534_1_6_1062348.svs', '<code object checkSimilarity at 0x7f9830ab1030, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 57>')
2021-11-16 08:48:42,476 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ('slice indices must be integers or None or have an __index__ method', '/home/user/Documents/Master/svs_base/SS7534_1_6_1062348.svs', '<code object checkSimilarity at 0x7f606622c030, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 57>')
2021-11-16 08:49:04,564 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_6_1062348.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("int() argument must be a string, a bytes-like object or a number, not 'tuple'", '/home/user/Documents/Master/svs_base/SS7534_1_6_1062348.svs', '<code object checkSimilarity at 0x7fa331b16030, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 57>')
2021-11-16 09:40:21,146 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_8_1062350.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('zero-size array to reduction operation minimum which has no identity', '/home/user/Documents/Master/svs_base/SS7534_1_8_1062350.svs', '<code object checkSimilarity at 0x7f19533c50c0, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 57>')
2021-11-16 09:41:38,394 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_8_1062350.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('zero-size array to reduction operation minimum which has no identity', '/home/user/Documents/Master/svs_base/SS7534_1_8_1062350.svs', '<code object checkSimilarity at 0x7f6ead3ce0c0, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 57>')
2021-11-17 13:27:57,761 - ERROR - SS7534_1_10_1062352.svs - Similarity check aborted: No or only one tissue part detected. 1
2021-11-17 13:28:02,983 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_1_1062343.svs - - Error analyzing file (skipping): <class 'AttributeError'> Attribute not found. ("'list' object has no attribute 'distance'", '/home/user/Documents/Master/svs_base/SS7534_1_1_1062343.svs', '<code object checkSimilarity at 0x7f4a13e9f300, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 71>')
2021-11-17 13:28:03,757 - ERROR - SS7534_1_2_1062344.svs - Similarity check aborted: No or only one tissue part detected. 1
2021-11-17 13:32:29,952 - ERROR - SS7534_1_10_1062352.svs - Similarity check aborted: No or only one tissue part detected. 1
2021-11-18 08:00:13,555 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_8_1062350.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 's' is not defined", '/home/user/Documents/Master/svs_base/SS7534_1_8_1062350.svs', '<code object checkSimilarity at 0x7f9f8b8d0270, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 69>')
2021-11-18 08:09:41,772 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs - - Error analyzing file (skipping): <class 'ValueError'> Inappropriate argument value (of correct type). ('not enough values to unpack (expected 4, got 3)', '/home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs', '<code object checkSimilarity at 0x7ff22c20e270, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 77>')
2021-11-18 09:05:38,948 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs - - Error analyzing file (skipping): <class 'RuntimeError'> Unspecified run-time error. ('Given backend "/home/user/anaconda3/lib/python3.7/site-packages/visvis/backends/wx.xxx" could not be loaded.', '/home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs', '<code object checkSimilarity at 0x7fc936cb1270, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 88>')
2021-11-18 09:09:59,001 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs - - Error analyzing file (skipping): <class 'RuntimeError'> Unspecified run-time error. ('Given backend "/home/user/anaconda3/lib/python3.7/site-packages/visvis/backends/wx.xxx" could not be loaded.', '/home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs', '<code object checkSimilarity at 0x7f47729bc300, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 88>')
2021-11-18 10:05:33,640 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("imsave() missing 1 required positional argument: 'arr'", '/home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs', '<code object checkSimilarity at 0x7f504fa71300, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 82>')
2021-11-18 10:06:12,285 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs - - Error analyzing file (skipping): <class 'TypeError'> Inappropriate argument type. ("imsave() missing 1 required positional argument: 'arr'", '/home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs', '<code object checkSimilarity at 0x7f56a213f300, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 82>')
2021-11-18 10:10:24,020 - ERROR - /home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs - - Error analyzing file (skipping): <class 'NameError'> Name not found globally. ("name 'Image' is not defined", '/home/user/Documents/Master/svs_base/SS7534_1_7_1062349.svs', '<code object checkSimilarity at 0x7f78a84a1300, file "/home/user/Documents/Master/HistoQC/SimilarityModule.py", line 83>')