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RPathVisio importData() error #35

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Preethiba-Gopi opened this issue Dec 3, 2019 · 5 comments
Open

RPathVisio importData() error #35

Preethiba-Gopi opened this issue Dec 3, 2019 · 5 comments

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@Preethiba-Gopi
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Hi,
I am working on RPathVisio and I tried to import data in that I came across the error
Please try to fix this error
Cmd:
importData("test", data, "Dr_Derby_Ensembl_91.bridge", host="localhost", port=9000,row.names = TRUE,source="Entrez Gene")

Error in function (type, msg, asError = TRUE) :
Failed to connect to localhost port 9000: Connection refused

@mkutmon
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mkutmon commented Dec 3, 2019

did you test your connection? is the server started on port 9000?

@Preethiba-Gopi
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Hi,
I checked the server starting ports and I changed the port as follows
Cmd:
importData(name="test", dataframe=data, dbname = "Dr_Derby_Ensembl_91.bridge", host="localhost", port=27017, row.names=TRUE, source="Entrez Gene")
Error in function (type, msg, asError = TRUE) : Empty reply from server
But I got error like this. What I need to install in server

@mkutmon
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mkutmon commented Dec 4, 2019

you should find the required documentation here: https://projects.bigcat.unimaas.nl/pathvisiorpc/documentation/launching-the-pathvisiorpc-server/

Let me know if it is not working.

@Preethiba-Gopi
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Hi,
Thank you for the documentations and for support. I started PathVisioRPC in 9000 port then I exected the command as follows:
importData(name = "test", dataframe = data, dbname = "Dr_Derby_Ensembl_91", host="localhost", port=9000,row.names = FALSE,source="Entrez Gene")
and I got this error
Error in convertToR(xmlParse(node, asText = TRUE)) :
faultCode: 0 faultString: No method matching arguments: java.lang.String, java.lang.String, java.lang.String
Can u please help me to explain this? Where I am going wrong?

@Preethiba-Gopi
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Hi,
Can you please help me in fixing the above mentioned issue?

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