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using mgf files created by ProteomeDiscoverer 2.3 #49
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it should work if you give
The scan will be overwritten by the |
should i change the BasicConfig.conf file then? now the mgf section is like this:
should i change last 2 lines with
|
Almost - everything in there that starts with a If you care about what file an identification comes from I would not combine the raws into a single mgf-file. At least this way you can reconstruct where the spectra comes from based on the name of the mgf-file. |
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Dear XiSearch team
I usually like to create mgf files with PD specific node because I can easily filter with S/N thresholds and is quite faster than msconvert. Furthermore, if I am doing many fractions I can also directly merge them in 1 mgf file that is easier to send and store.
the problem is that mgf files look for example like this:
BEGIN IONS
TITLE=35319
PEPMASS=678.67432 554741.87500
CHARGE=3+
RTINSECONDS=3213
SCANS=15601
the TITLE is an increasing number from 1 to the last scan in the mgf file while SCANS is relative to the original scan number in the raw file.
would it be possible to use this type of Mgf in xiSearch?
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