Update pdb_mapping.nf

emmaco · emmaco · commit 78dc9ceae35a · 2023-08-16T13:46:35.000+01:00
diff --git a/pipelines/pdb/pdb_mapping.nf b/pipelines/pdb/pdb_mapping.nf
@@ -44,7 +44,7 @@ process run_cmscan {
     path('*.tbl')
     
     """
-    cmscan -o ${query}.output --tblout ${query}.tbl --cut_ga $params.pdb_files/Rfam.cm $query
+    cmscan -o ${query}.output --tblout ${query}.tbl --cut_ga --toponly $params.pdb_files/Rfam.cm $query
     """
 }
 

Original file line number	Diff line number	Diff line change
`@@ -44,7 +44,7 @@ process run_cmscan {`
`44`	`44`	`path('*.tbl')`
`45`	`45`
`46`	`46`	`"""`
`47`		`- cmscan -o ${query}.output --tblout ${query}.tbl --cut_ga $params.pdb_files/Rfam.cm $query`
	`47`	`+ cmscan -o ${query}.output --tblout ${query}.tbl --cut_ga --toponly $params.pdb_files/Rfam.cm $query`
`48`	`48`	`"""`
`49`	`49`	`}`
`50`	`50`