[pre-commit.ci lite] apply automatic fixes for ruff linting errors

Author: pre-commit-ci-lite[bot]

src/sas/sascalc/shape2sas/Models.py

@@ -3,10 +3,21 @@
 import numpy as np
 
 from sas.sascalc.shape2sas.HelperFunctions import Qsampling, euler_rotation_matrix
-from sas.sascalc.shape2sas.models import \
-    Cube, Cuboid, Cylinder, CylinderRing, Disc, DiscRing, Ellipsoid, \
-    EllipticalCylinder, HollowCube, HollowSphere, Sphere, SuperEllipsoid
-from sas.sascalc.shape2sas.Typing import Vectors, Vector3D, Vector4D
+from sas.sascalc.shape2sas.models import (
+    Cube,
+    Cuboid,
+    Cylinder,
+    CylinderRing,
+    Disc,
+    DiscRing,
+    Ellipsoid,
+    EllipticalCylinder,
+    HollowCube,
+    HollowSphere,
+    Sphere,
+    SuperEllipsoid,
+)
+from sas.sascalc.shape2sas.Typing import Vector3D, Vector4D, Vectors
 
 
 @dataclass
@@ -72,7 +83,7 @@ def __init__(self, matrix: np.ndarray, center_mass: np.ndarray):
 
 def transform(coords: np.ndarray[Vector3D], translate: Translation = np.array([0, 0, 0]), rotate: Rotation = Rotation(np.eye(3), np.array([0, 0, 0]))):
     """Transform a set of coordinates by a rotation R and translation T"""
-    if isinstance(rotate, np.ndarray): 
+    if isinstance(rotate, np.ndarray):
         rotate = Rotation(rotate, np.array([0, 0, 0]))
     assert coords.shape[0] == 3
     assert translate.shape == (3,)

src/sas/sascalc/shape2sas/Shape2SAS.py

@@ -7,11 +7,16 @@
 
 from sas.sascalc.shape2sas.ExperimentalScattering import SimulateScattering, getSimulatedScattering
 from sas.sascalc.shape2sas.HelperFunctions import generate_pdb, plot_2D, plot_results
-from sas.sascalc.shape2sas.Models import Qsampling, ModelProfile, SimulationParameters, getPointDistribution
+from sas.sascalc.shape2sas.Models import ModelProfile, Qsampling, SimulationParameters, getPointDistribution
 from sas.sascalc.shape2sas.StructureFactor import StructureFactor
-from sas.sascalc.shape2sas.TheoreticalScattering import \
-    TheoreticalScatteringCalculation, ModelSystem, ITheoretical, WeightedPairDistribution, \
-    getTheoreticalScattering, getTheoreticalHistogram
+from sas.sascalc.shape2sas.TheoreticalScattering import (
+    ITheoretical,
+    ModelSystem,
+    TheoreticalScatteringCalculation,
+    WeightedPairDistribution,
+    getTheoreticalHistogram,
+    getTheoreticalScattering,
+)
 
 ################################ Shape2SAS batch version ################################
 if __name__ == "__main__":

src/sas/sascalc/shape2sas/StructureFactor.py

@@ -1,7 +1,7 @@
 
 import numpy as np
 
-from sas.sascalc.shape2sas.structure_factors import HardSphereStructure, Aggregation, NoStructure
+from sas.sascalc.shape2sas.structure_factors import Aggregation, HardSphereStructure, NoStructure
 
 
 class StructureFactor:

src/sas/sascalc/shape2sas/models/Cube.py

@@ -1,4 +1,5 @@
 import numpy as np
+
 from sas.sascalc.shape2sas.Typing import Vector3D
 
 

src/sas/sascalc/shape2sas/models/Cuboid.py

@@ -1,4 +1,5 @@
 import numpy as np
+
 from sas.sascalc.shape2sas.Typing import Vector3D
 
 

src/sas/sascalc/shape2sas/models/Cylinder.py

@@ -1,4 +1,5 @@
 import numpy as np
+
 from sas.sascalc.shape2sas.Typing import Vector3D
 
 

src/sas/sascalc/shape2sas/models/CylinderRing.py

@@ -1,4 +1,5 @@
 import numpy as np
+
 from sas.sascalc.shape2sas.Typing import Vector3D
 
 

src/sas/sascalc/shape2sas/models/Ellipsoid.py

@@ -1,4 +1,5 @@
 import numpy as np
+
 from sas.sascalc.shape2sas.Typing import Vector3D
 
 

src/sas/sascalc/shape2sas/models/EllipticalCylinder.py

@@ -1,4 +1,5 @@
 import numpy as np
+
 from sas.sascalc.shape2sas.Typing import Vector3D
 
 

src/sas/sascalc/shape2sas/models/HollowCube.py

@@ -1,4 +1,5 @@
 import numpy as np
+
 from sas.sascalc.shape2sas.Typing import Vector3D