Could there be a setting added to select which options to enable?

[Callipygia]

Or is there a way to disable certain parts of the mod?

[Shad000w]

Or is there a way to disable certain parts of the mod?

There are already two options:

#1 - AutoPlay.json, edit it in notepad and you can disable some features by changing the value of said feature in this file from true to false
#2 - Mod Config modification, this mods adds a Modification settings directly into game and my mod supports this so if you have both mods installed you will see these options directly ingame and can toggle them on the fly. Link: https://www.nexusmods.com/slaythespire2/mods/27