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<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
<meta charset="utf-8">
<meta name="generator" content="quarto-1.2.280">
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
<meta name="author" content="Klinkenberg">
<title>Statistics Taxonomy Tree</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
div.columns{display: flex; gap: min(4vw, 1.5em);}
div.column{flex: auto; overflow-x: auto;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
ul.task-list li input[type="checkbox"] {
width: 0.8em;
margin: 0 0.8em 0.2em -1.6em;
vertical-align: middle;
}
pre > code.sourceCode { white-space: pre; position: relative; }
pre > code.sourceCode > span { display: inline-block; line-height: 1.25; }
pre > code.sourceCode > span:empty { height: 1.2em; }
.sourceCode { overflow: visible; }
code.sourceCode > span { color: inherit; text-decoration: inherit; }
div.sourceCode { margin: 1em 0; }
pre.sourceCode { margin: 0; }
@media screen {
div.sourceCode { overflow: auto; }
}
@media print {
pre > code.sourceCode { white-space: pre-wrap; }
pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
}
pre.numberSource code
{ counter-reset: source-line 0; }
pre.numberSource code > span
{ position: relative; left: -4em; counter-increment: source-line; }
pre.numberSource code > span > a:first-child::before
{ content: counter(source-line);
position: relative; left: -1em; text-align: right; vertical-align: baseline;
border: none; display: inline-block;
-webkit-touch-callout: none; -webkit-user-select: none;
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padding: 0 4px; width: 4em;
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pre.numberSource { margin-left: 3em; border-left: 1px solid #aaaaaa; padding-left: 4px; }
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{ }
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pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; }
}
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code span.an { color: #60a0b0; font-weight: bold; font-style: italic; } /* Annotation */
code span.at { color: #7d9029; } /* Attribute */
code span.bn { color: #40a070; } /* BaseN */
code span.bu { color: #008000; } /* BuiltIn */
code span.cf { color: #007020; font-weight: bold; } /* ControlFlow */
code span.ch { color: #4070a0; } /* Char */
code span.cn { color: #880000; } /* Constant */
code span.co { color: #60a0b0; font-style: italic; } /* Comment */
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code span.do { color: #ba2121; font-style: italic; } /* Documentation */
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</style>
<script src="taxonomy_tree_files/libs/clipboard/clipboard.min.js"></script>
<script src="taxonomy_tree_files/libs/quarto-html/quarto.js"></script>
<script src="taxonomy_tree_files/libs/quarto-html/popper.min.js"></script>
<script src="taxonomy_tree_files/libs/quarto-html/tippy.umd.min.js"></script>
<script src="taxonomy_tree_files/libs/quarto-html/anchor.min.js"></script>
<link href="taxonomy_tree_files/libs/quarto-html/tippy.css" rel="stylesheet">
<link href="taxonomy_tree_files/libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<script src="taxonomy_tree_files/libs/bootstrap/bootstrap.min.js"></script>
<link href="taxonomy_tree_files/libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="taxonomy_tree_files/libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
<script src="taxonomy_tree_files/libs/htmlwidgets-1.5.4/htmlwidgets.js"></script>
<script src="taxonomy_tree_files/libs/d3-4.10.2/d3.min.js"></script>
<link href="taxonomy_tree_files/libs/collapsibleTree-0.1.6/collapsibleTree.css" rel="stylesheet">
<script src="taxonomy_tree_files/libs/collapsibleTree-binding-0.1.7/collapsibleTree.js"></script>
</head>
<body class="fullcontent">
<div id="quarto-content" class="page-columns page-rows-contents page-layout-article">
<main class="content" id="quarto-document-content">
<header id="title-block-header" class="quarto-title-block default">
<div class="quarto-title">
<h1 class="title">Statistics Taxonomy Tree</h1>
</div>
<div class="quarto-title-meta">
<div>
<div class="quarto-title-meta-heading">Author</div>
<div class="quarto-title-meta-contents">
<p>Klinkenberg </p>
</div>
</div>
</div>
</header>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="co"># install.packages("devtools") # if you have not installed "devtools" package</span></span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="co"># devtools::install_github("ShKlinkenberg/collapsibleTree")</span></span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(readxl)</span>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(<span class="st">"collapsibleTree"</span>)</span>
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a>assessment.network <span class="ot"><-</span> <span class="fu">read_excel</span>(<span class="st">"taxonomy_tree.xlsx"</span>)</span>
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a><span class="co"># tooltip.text = '<h3>%s</h3>\n<p>%s</p>\n<p>Go <a href="%s">Here</a></p>'</span></span>
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a><span class="co"># assessment.network$tooltip <- sprintf(tooltip.text, </span></span>
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a><span class="co"># assessment.network$title, </span></span>
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a><span class="co"># "Look at this", </span></span>
<span id="cb1-10"><a href="#cb1-10" aria-hidden="true" tabindex="-1"></a><span class="co"># "https://www.surf.nl")</span></span>
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-12"><a href="#cb1-12" aria-hidden="true" tabindex="-1"></a><span class="co"># convert parend and child numbers to name string</span></span>
<span id="cb1-13"><a href="#cb1-13" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-14"><a href="#cb1-14" aria-hidden="true" tabindex="-1"></a>assessment.network <span class="ot"><-</span> <span class="fu">merge</span>(assessment.network, assessment.network[,<span class="fu">c</span>(<span class="st">"child"</span>, <span class="st">"name_en"</span>)], <span class="at">by.x =</span> <span class="st">"parent"</span>, <span class="at">by.y =</span> <span class="st">"child"</span>, <span class="at">all.x =</span> <span class="cn">TRUE</span>)</span>
<span id="cb1-15"><a href="#cb1-15" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-16"><a href="#cb1-16" aria-hidden="true" tabindex="-1"></a>assessment.network<span class="sc">$</span>parent <span class="ot">=</span> assessment.network<span class="sc">$</span>name_en.y</span>
<span id="cb1-17"><a href="#cb1-17" aria-hidden="true" tabindex="-1"></a>assessment.network<span class="sc">$</span>child <span class="ot">=</span> assessment.network<span class="sc">$</span>name_en.x</span>
<span id="cb1-18"><a href="#cb1-18" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-19"><a href="#cb1-19" aria-hidden="true" tabindex="-1"></a><span class="fu">collapsibleTreeNetwork</span>(</span>
<span id="cb1-20"><a href="#cb1-20" aria-hidden="true" tabindex="-1"></a> assessment.network,</span>
<span id="cb1-21"><a href="#cb1-21" aria-hidden="true" tabindex="-1"></a> <span class="at">attribute =</span> <span class="st">"title"</span></span>
<span id="cb1-22"><a href="#cb1-22" aria-hidden="true" tabindex="-1"></a> <span class="co"># tooltipHtml = "tooltip",</span></span>
<span id="cb1-23"><a href="#cb1-23" aria-hidden="true" tabindex="-1"></a> <span class="co"># zoomable = FALSE</span></span>
<span id="cb1-24"><a href="#cb1-24" aria-hidden="true" tabindex="-1"></a>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="htmlwidget-987f664f5b473a696f64" style="width:100%;height:464px;" class="collapsibleTree html-widget"></div>
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Techniques","WeightOfNode":"Inferential Statistics/Parametric Techniques","children":[{"name":"Cross tables","WeightOfNode":"Inferential Statistics/Parametric Techniques/Cross tables","children":[{"name":"Chi-Squared for Independence","WeightOfNode":"Inferential Statistics/Parametric Techniques/Cross tables/Chi-Squared for Independence"},{"name":"Chi-Squared for Homogeneity","WeightOfNode":"Inferential Statistics/Parametric Techniques/Cross tables/Chi-Squared for Homogeneity"},{"name":"Fisher's Exact Test","WeightOfNode":"Inferential Statistics/Parametric Techniques/Cross tables/Fisher's Exact Test"},{"name":"Chi-Squared Goodness of Fit","WeightOfNode":"Inferential Statistics/Parametric Techniques/Cross tables/Chi-Squared Goodness of Fit"}]},{"name":"Correlations","WeightOfNode":"Inferential Statistics/Parametric Techniques/Correlations","children":[{"name":"Spearman","WeightOfNode":"Inferential Statistics/Parametric 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