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import com.sun.j3d.utils.universe.ViewingPlatform;
import java.awt.*;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import org.jfree.chart.ChartFactory;
import org.jfree.chart.ChartPanel;
import org.jfree.chart.JFreeChart;
import org.jfree.chart.axis.CategoryAxis;
import org.jfree.chart.axis.CategoryLabelPositions;
import org.jfree.chart.axis.NumberAxis;
import org.jfree.chart.plot.CategoryPlot;
import org.jfree.chart.plot.PlotOrientation;
import org.jfree.chart.renderer.category.BarRenderer;
import org.jfree.chart.renderer.category.StandardBarPainter;
import org.jfree.data.category.CategoryDataset;
import org.jfree.data.category.DefaultCategoryDataset;
import org.jfree.ui.ApplicationFrame;
import org.jfree.ui.RefineryUtilities;
import javax.swing.*;
/** Author: Shikhar K Gupta, Foram Joshi
* Project: DNA Pen
* Mentor: Prof. Manish K Gupta
*/
public class ViewGraphActionListener extends JFrame implements ActionListener {
// CoordinatesSeqMap c=new CoordinatesSeqMap();
public static int eightBPSimilarity = 0;
public static int sevenBPSimilarity = 0;
public static int sixBPSimilarity = 0;
public static int domainCount = 0;
public ViewGraphActionListener(String title) {
super(title);
final CategoryDataset dataset = createDataset();
final JFreeChart chart = createChart(dataset);
final ChartPanel chartPanel = new ChartPanel(chart);
chartPanel.setPreferredSize(new Dimension(500, 270));
setContentPane(chartPanel);
}
private CategoryDataset createDataset() {
// row keys...
final String series1 = "No. of Sequences";
// column keys...
final String category1 = "8";
final String category2 = "7";
final String category3 = "6";
// create the dataset...
final DefaultCategoryDataset dataset = new DefaultCategoryDataset();
dataset.addValue(eightBPSimilarity, series1, category1);
dataset.addValue(sevenBPSimilarity, series1, category2);
dataset.addValue(sixBPSimilarity, series1, category3);
return dataset;
}
@Override
public void actionPerformed(ActionEvent e) {
createGraph();
final ViewGraphActionListener viewGraphActionListener = new ViewGraphActionListener("3DNA Domain Graph");
ImageIcon img = new ImageIcon("images/logod.png");
Image imag=img.getImage();
viewGraphActionListener.setIconImage(imag);
viewGraphActionListener.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
viewGraphActionListener.pack();
RefineryUtilities.centerFrameOnScreen(viewGraphActionListener);
viewGraphActionListener.setVisible(true);
}
private JFreeChart createChart(final CategoryDataset dataset) {
domainCount=0;
for (int i = 0; i < CoordinatesSequenceMap.brickList.size(); i++) {
if (CoordinatesSequenceMap.brickList.get(i).Domain1 != null)
domainCount++;
if (CoordinatesSequenceMap.brickList.get(i).Domain2 != null)
domainCount++;
if (CoordinatesSequenceMap.brickList.get(i).Domain3 != null)
domainCount++;
if (CoordinatesSequenceMap.brickList.get(i).Domain4 != null)
domainCount++;
if (CoordinatesSequenceMap.brickList.get(i).Domain5 != null)
domainCount++;
if (CoordinatesSequenceMap.brickList.get(i).Domain6 != null)
domainCount++;
}
// create the chart...
final JFreeChart chart = ChartFactory.createBarChart(
"3DNA: Analysis of Identical Bases in " + domainCount + " Domains", // chart title
"No. of Identical bases", // domain axis label
"Pairs of Domains", // range axis label
dataset, // data
PlotOrientation.VERTICAL, // orientation
true, // include legend
true, // tooltips?
false // URLs?
);
// NOW DO SOME OPTIONAL CUSTOMISATION OF THE CHART...
// set the background color for the chart...
chart.setBackgroundPaint(Color.white);
// get a reference to the plot for further customisation...
final CategoryPlot plot = chart.getCategoryPlot();
plot.setBackgroundPaint(Color.white);
plot.setDomainGridlinePaint(Color.black);
plot.setRangeGridlinePaint(Color.black);
// set the range axis to display integers only...
final NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis();
rangeAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits());
// disable bar outlines...
final BarRenderer renderer = (BarRenderer) plot.getRenderer();
renderer.setDrawBarOutline(true);
renderer.setBarPainter(new StandardBarPainter());
// set up gradient paints for series...
final GradientPaint gp0 = new GradientPaint(
0.0f, 0.0f, Color.blue,
0.0f, 0.0f, Color.blue
);
final GradientPaint gp1 = new GradientPaint(
0.0f, 0.0f, Color.green,
0.0f, 0.0f, Color.green
);
final GradientPaint gp2 = new GradientPaint(
0.0f, 0.0f, Color.red,
0.0f, 0.0f, Color.red
);
renderer.setSeriesPaint(0, gp0);
renderer.setSeriesPaint(1, gp1);
renderer.setSeriesPaint(2, gp2);
final CategoryAxis domainAxis = plot.getDomainAxis();
domainAxis.setCategoryLabelPositions(
CategoryLabelPositions.createUpRotationLabelPositions(Math.PI / 6.0)
);
// OPTIONAL CUSTOMISATION COMPLETED.
return chart;
}
public void createGraph() {
eightBPSimilarity = 0;
sevenBPSimilarity = 0;
sixBPSimilarity = 0;
int size=CoordinatesSequenceMap.brickList.size()*4;
String[] Domains = new String[size];
int counter = 0;
for (int i = 0; i < CoordinatesSequenceMap.brickList.size(); i++) {
if (CoordinatesSequenceMap.brickList.get(i).Domain1 != null && !(CoordinatesSequenceMap.brickList.get(i).Domain1.equals("TTTTTTTT"))) {
Domains[counter] = CoordinatesSequenceMap.brickList.get(i).Domain1;
counter++;
}
if (CoordinatesSequenceMap.brickList.get(i).Domain2 != null && !(CoordinatesSequenceMap.brickList.get(i).Domain2.equals("TTTTTTTT"))) {
Domains[counter] = CoordinatesSequenceMap.brickList.get(i).Domain2;
counter++;
}
if (CoordinatesSequenceMap.brickList.get(i).Domain3 != null && !(CoordinatesSequenceMap.brickList.get(i).Domain3.equals("TTTTTTTT"))) {
Domains[counter] = CoordinatesSequenceMap.brickList.get(i).Domain3;
counter++;
}
if (CoordinatesSequenceMap.brickList.get(i).Domain4 != null && !(CoordinatesSequenceMap.brickList.get(i).Domain4.equals("TTTTTTTT"))) {
Domains[counter] = CoordinatesSequenceMap.brickList.get(i).Domain4;
counter++;
}
if (CoordinatesSequenceMap.brickList.get(i).Domain5 != null && !(CoordinatesSequenceMap.brickList.get(i).Domain5.equals("TTTTTTTT"))) {
Domains[counter] = CoordinatesSequenceMap.brickList.get(i).Domain5;
counter++;
}
if (CoordinatesSequenceMap.brickList.get(i).Domain6 != null && !(CoordinatesSequenceMap.brickList.get(i).Domain6.equals("TTTTTTTT"))) {
Domains[counter] = CoordinatesSequenceMap.brickList.get(i).Domain6;
counter++;
}
}
for (int i = 0; i < counter; i++) {
for (int j = i + 1; j < counter; j++) {
if (Domains[i].equals(Domains[j])) {
eightBPSimilarity++;
System.out.println(Domains[i] + "&& " + Domains[j]);
}
else if ((Domains[i].charAt(0) == Domains[j].charAt(0) && Domains[i].charAt(1) == Domains[j].charAt(1) &&
Domains[i].charAt(2) == Domains[j].charAt(2) && Domains[i].charAt(3) == Domains[j].charAt(3) &&
Domains[i].charAt(4) == Domains[j].charAt(4) && Domains[i].charAt(5) == Domains[j].charAt(5) &&
Domains[i].charAt(6) == Domains[j].charAt(6)) ||
(Domains[i].charAt(0) == Domains[j].charAt(1) && Domains[i].charAt(1) == Domains[j].charAt(2) &&
Domains[i].charAt(2) == Domains[j].charAt(3) && Domains[i].charAt(3) == Domains[j].charAt(4) &&
Domains[i].charAt(4) == Domains[j].charAt(5) && Domains[i].charAt(5) == Domains[j].charAt(6) &&
Domains[i].charAt(6) == Domains[j].charAt(7)) ||
(Domains[i].charAt(7) == Domains[j].charAt(7) && Domains[i].charAt(1) == Domains[j].charAt(1) &&
Domains[i].charAt(2) == Domains[j].charAt(2) && Domains[i].charAt(3) == Domains[j].charAt(3) &&
Domains[i].charAt(4) == Domains[j].charAt(4) && Domains[i].charAt(5) == Domains[j].charAt(5) &&
Domains[i].charAt(6) == Domains[j].charAt(6)) ||
(Domains[i].charAt(1) == Domains[j].charAt(0) && Domains[i].charAt(2) == Domains[j].charAt(1) &&
Domains[i].charAt(3) == Domains[j].charAt(2) && Domains[i].charAt(4) == Domains[j].charAt(3) &&
Domains[i].charAt(5) == Domains[j].charAt(4) && Domains[i].charAt(6) == Domains[j].charAt(5) &&
Domains[i].charAt(7) == Domains[j].charAt(6))) {
sevenBPSimilarity++;
} else if (
//0-5=0-5
(Domains[i].charAt(0) == Domains[j].charAt(0) && Domains[i].charAt(1) == Domains[j].charAt(1) && Domains[i].charAt(2) == Domains[j].charAt(2) &&
Domains[i].charAt(3) == Domains[j].charAt(3) && Domains[i].charAt(4) == Domains[j].charAt(4) && Domains[i].charAt(5) == Domains[j].charAt(5)) ||
//0-5=1-6
(Domains[i].charAt(0) == Domains[j].charAt(1) && Domains[i].charAt(1) == Domains[j].charAt(2) && Domains[i].charAt(2) == Domains[j].charAt(3) &&
Domains[i].charAt(3) == Domains[j].charAt(4) && Domains[i].charAt(4) == Domains[j].charAt(5) && Domains[i].charAt(5) == Domains[j].charAt(6)) ||
//1-6=1-6
(Domains[i].charAt(6) == Domains[j].charAt(6) && Domains[i].charAt(1) == Domains[j].charAt(1) && Domains[i].charAt(2) == Domains[j].charAt(2) &&
Domains[i].charAt(3) == Domains[j].charAt(3) && Domains[i].charAt(4) == Domains[j].charAt(4) && Domains[i].charAt(5) == Domains[j].charAt(5)) ||
//2-7=2-7
(Domains[i].charAt(2) == Domains[j].charAt(2) && Domains[i].charAt(3) == Domains[j].charAt(3) && Domains[i].charAt(4) == Domains[j].charAt(4) &&
Domains[i].charAt(5) == Domains[j].charAt(5) && Domains[i].charAt(6) == Domains[j].charAt(6) && Domains[i].charAt(7) == Domains[j].charAt(7)) ||
//1-6=0-5
(Domains[i].charAt(1) == Domains[j].charAt(0) && Domains[i].charAt(2) == Domains[j].charAt(1) && Domains[i].charAt(3) == Domains[j].charAt(2) &&
Domains[i].charAt(4) == Domains[j].charAt(3) && Domains[i].charAt(5) == Domains[j].charAt(4) && Domains[i].charAt(6) == Domains[j].charAt(5)) ||
//0-5=2-7
(Domains[i].charAt(0) == Domains[j].charAt(2) && Domains[i].charAt(1) == Domains[j].charAt(3) && Domains[i].charAt(2) == Domains[j].charAt(4) &&
Domains[i].charAt(3) == Domains[j].charAt(5) && Domains[i].charAt(4) == Domains[j].charAt(6) && Domains[i].charAt(5) == Domains[j].charAt(7)) ||
//0-5=2-7
(Domains[i].charAt(1) == Domains[j].charAt(2) && Domains[i].charAt(2) == Domains[j].charAt(3) && Domains[i].charAt(3) == Domains[j].charAt(4) &&
Domains[i].charAt(4) == Domains[j].charAt(5) && Domains[i].charAt(5) == Domains[j].charAt(6) && Domains[i].charAt(6) == Domains[j].charAt(7)) ||
//2-7=0-5
(Domains[i].charAt(2) == Domains[j].charAt(0) && Domains[i].charAt(3) == Domains[j].charAt(1) && Domains[i].charAt(4) == Domains[j].charAt(2) &&
Domains[i].charAt(5) == Domains[j].charAt(3) && Domains[i].charAt(6) == Domains[j].charAt(4) && Domains[i].charAt(7) == Domains[j].charAt(5)) ||
//2-7=1-6
(Domains[i].charAt(2) == Domains[j].charAt(1) && Domains[i].charAt(3) == Domains[j].charAt(2) && Domains[i].charAt(4) == Domains[j].charAt(3) &&
Domains[i].charAt(5) == Domains[j].charAt(4) && Domains[i].charAt(6) == Domains[j].charAt(5) && Domains[i].charAt(7) == Domains[j].charAt(6)))
sixBPSimilarity++;
}
}
}
}