v3.3 (#189)

Author: TLCFEM

.github/dependabot.yml

@@ -0,0 +1,6 @@
+version: 2
+updates:
+  - package-ecosystem: github-actions
+    directory: /
+    schedule:
+      interval: weekly

.github/workflows/dev-all.yml

@@ -6,7 +6,7 @@ on:
     branches: [ dev ]
 jobs:
   ubuntu-dev:
-    if: "!contains(github.event.head_commit.message, '[skip]')"
+    if: ${{ !contains(github.event.head_commit.message, '[skip]') }}
     runs-on: ubuntu-22.04
     timeout-minutes: 60
     strategy:
@@ -27,7 +27,7 @@ jobs:
       - name: Clone
         uses: actions/checkout@v4
       - name: Golang
-        uses: actions/setup-go@v4
+        uses: actions/setup-go@v5
         with:
           cache: false
       - name: VTK
@@ -107,7 +107,7 @@ jobs:
           echo "ARTIFACT=$file_name" >> "$GITHUB_ENV"
           tar czf $file_name -C build/dist .
       - name: Upload
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: ${{ env.ARTIFACT }}
           path: ${{ env.ARTIFACT }}
@@ -128,7 +128,7 @@ jobs:
         with:
           gcov: true
   macos-dev:
-    if: "!contains(github.event.head_commit.message, '[skip]')"
+    if: ${{ !contains(github.event.head_commit.message, '[skip]') }}
     runs-on: macos-11
     timeout-minutes: 100
     strategy:
@@ -143,7 +143,7 @@ jobs:
       - name: Clone
         uses: actions/checkout@v4
       - name: Golang
-        uses: actions/setup-go@v4
+        uses: actions/setup-go@v5
         with:
           cache: false
       - name: VTK
@@ -189,12 +189,12 @@ jobs:
           export DYLD_LIBRARY_PATH=/Users/runner/work/suanPan/suanPan/build/dist/lib/
           ./build/dist/bin/suanPan -v
       - name: Upload
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: ${{ env.ARTIFACT }}
           path: ${{ env.ARTIFACT }}
   windows-dev:
-    if: "!contains(github.event.head_commit.message, '[skip]')"
+    if: ${{ !contains(github.event.head_commit.message, '[skip]') }}
     runs-on: windows-2022
     timeout-minutes: 100
     strategy:
@@ -207,7 +207,7 @@ jobs:
       - name: Clone
         uses: actions/checkout@v4
       - name: Golang
-        uses: actions/setup-go@v4
+        uses: actions/setup-go@v5
         with:
           cache: false
       - name: VTK
@@ -248,7 +248,7 @@ jobs:
         run: |
           build/dist/bin/suanPan.exe -v
       - name: Upload
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: ${{ env.ARTIFACT }}
           path: ${{ env.ARTIFACT }}

.github/workflows/docker.yml

@@ -2,8 +2,6 @@ name: Docker
 on:
   push:
     branches: [ dev ]
-  pull_request:
-    branches: [ dev ]
 jobs:
   ubuntu-dev:
     if: "!contains(github.event.head_commit.message, '[skip]')"

.github/workflows/master-all.yml

@@ -17,7 +17,7 @@ jobs:
       - name: Clone
         uses: actions/checkout@v4
       - name: Golang
-        uses: actions/setup-go@v4
+        uses: actions/setup-go@v5
         with:
           cache: false
       - name: Prepare
@@ -62,7 +62,7 @@ jobs:
           echo "ARTIFACT=$file_name" >> "$GITHUB_ENV"
           tar czf $file_name -C build/dist .
       - name: Upload
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: ${{ env.ARTIFACT }}
           path: ${{ env.ARTIFACT }}
@@ -85,7 +85,7 @@ jobs:
       - name: Clone
         uses: actions/checkout@v4
       - name: Golang
-        uses: actions/setup-go@v4
+        uses: actions/setup-go@v5
         with:
           cache: false
       - name: Prepare
@@ -117,7 +117,7 @@ jobs:
           echo "ARTIFACT=$file_name" >> "$GITHUB_ENV"
           tar czf $file_name -C build/dist .
       - name: Upload
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: ${{ env.ARTIFACT }}
           path: ${{ env.ARTIFACT }}
@@ -141,7 +141,7 @@ jobs:
       - name: Clone
         uses: actions/checkout@v4
       - name: Golang
-        uses: actions/setup-go@v4
+        uses: actions/setup-go@v5
         with:
           cache: false
       - name: Prepare
@@ -174,7 +174,7 @@ jobs:
           cd build/dist/bin
           7z a ../../../$file_name ./*
       - name: Upload
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: ${{ env.ARTIFACT }}
           path: ${{ env.ARTIFACT }}

.gitignore

@@ -26,6 +26,7 @@ $RECYCLE.BIN/
 /MSVC/Debug/*
 /MSVC/Release/*
 /MSVC/suanPan/.vs/*
+/MSVC/suanPan/.idea/*
 /MSVC/suanPan/amd/x64/*
 /MSVC/suanPan/arpack/x64/*
 /MSVC/suanPan/ElementExample/x64/*

CHANGELOG.md

@@ -5,15 +5,35 @@
 1. The `MKL` includes outdated `FEAST`, the external names in `FEAST` library are modified to avoid linking error.
 2. The `SPIKE` solver may occasionally freeze, to circumvent, try to avoid mixing compilers from different vendors.
 3. The `MUMPS` solver throws segfaults with large matrices.
+4. The `FGMRES` solver requires refinements.
+
+## version 3.3
+
+1. (breaking) revise syntax for `ConcreteTsai`, `Concrete21` and `Concrete22` using a more consistent definition
+2. fix tangent stiffness in `ConcreteK4` model [#171](https://github.com/TLCFEM/suanPan/pull/171)
+3. update `OpenBLAS` to version `0.3.25`
+4. update `SuperLU` to version `6.0.1`
+5. better `RCM` algorithm that may result in a smaller bandwidth, thus, potentially more efficient
+   solving [#175](https://github.com/TLCFEM/suanPan/pull/175)
+6. update `Armadillo` to version `12.6.7` [#180](https://github.com/TLCFEM/suanPan/pull/180)
+7. enable lazy evaluation and avoid temporary global matrices, faster dynamic
+   analysis [#183](https://github.com/TLCFEM/suanPan/pull/183)
+8. bugfixes: [#185](https://github.com/TLCFEM/suanPan/pull/185)
+9. update `Catch2` to version `3.5.2`
+10. update `fmt` to version `10.2.1`
+11. add nonviscous damping: `NonviscousNewmark` (global level integrator), `ElementalNonviscous` (element level
+    modifier) and `Nonviscous01` (material level model)
 
 ## version 3.2
 
 1. revise uniaxial universal damage models [#153](https://github.com/TLCFEM/suanPan/pull/153)
 2. update `OpenBLAS` to version `0.3.24`
 3. add a new uniaxial concrete model `ConcreteK4` [#155](https://github.com/TLCFEM/suanPan/pull/155)
-4. add beam element for arbitrary thin-/thick-walled open/close section with torsion and warping `B31OS` [#159](https://github.com/TLCFEM/suanPan/pull/159)
+4. add beam element for arbitrary thin-/thick-walled open/close section with torsion and
+   warping `B31OS` [#159](https://github.com/TLCFEM/suanPan/pull/159)
 5. better local iteration convergence criterion [#161](https://github.com/TLCFEM/suanPan/pull/161)
-6. `B31OS` and `EB31OS` associated transformations `B3DOSL`, `B3DOSC`; sections, `Fibre3DOS`, `Cell3DOS`; material wrappers `OS146`, `OS146S`
+6. `B31OS` and `EB31OS` associated transformations `B3DOSL`, `B3DOSC`; sections, `Fibre3DOS`, `Cell3DOS`; material
+   wrappers `OS146`, `OS146S`
 7. add elemental damping using Lee's model
 8. support Lode angle in CDPM2 [#163](https://github.com/TLCFEM/suanPan/pull/163)
 9. add `AICN` cubic Newton solver [#165](https://github.com/TLCFEM/suanPan/pull/165)
@@ -139,7 +159,7 @@
 2. add porous media plane strain elements `PCPE4UC`, `PCPE8UC`, `PCPE4DC`, `PCPE8DC`
 3. add N-M interaction enabled beam element `NMB31` and `NMB21`
 4. add N-M interaction enabled section `NM2D1`, `NM3D1` (elastic) and `NM2D2`, `NM3D2` (inelastic)
-5. change Rayleigh damping related syntax to include tangent stiffness term
+5. (breaking) change Rayleigh damping related syntax to include tangent stiffness term
 6. add different stiffness types to `LeeNewmarkFull`, add support of geometry nonlinearity
 7. revise section definition
 8. add `B3DC` corotational formulation support to 3D beams

CITATION.cff

@@ -29,4 +29,4 @@ keywords:
   - Solid Mechanics
 license: GPL-3.0
 version: '3.2'
-date-released: '2023-11-06'
+date-released: '2024-01-24'

CMakeLists.txt

@@ -1,17 +1,18 @@
-cmake_minimum_required(VERSION 3.13.0)
+cmake_minimum_required(VERSION 3.18)
 
 cmake_policy(SET CMP0076 NEW)
 
+if (CMAKE_GNUtoMS_VCVARS OR MINGW)
+    set(CMAKE_GNUtoMS ON)
+endif ()
+
 project(suanPan C CXX)
 
 set(CMAKE_C_STANDARD 11)
 set(CMAKE_CXX_STANDARD 20)
 set(CMAKE_CXX_STANDARD_REQUIRED ON)
 set(CMAKE_INCLUDE_CURRENT_DIR ON)
 set(CMAKE_POSITION_INDEPENDENT_CODE ON)
-if (CMAKE_GNUtoMS_VCVARS)
-    set(CMAKE_GNUtoMS ON)
-endif ()
 
 include(CheckLanguage)
 check_language(Fortran)
@@ -263,16 +264,21 @@ if (COMPILER_IDENTIFIER MATCHES "(linux|mac)")
         endif ()
     endif ()
     if (CMAKE_CXX_COMPILER_ID MATCHES "IntelLLVM")
-        set(ONEAPI_LIB $ENV{ONEAPI_ROOT}/compiler/latest/linux/compiler/lib/intel64_lin)
-        file(GLOB ONEAPI_FILES
-                ${ONEAPI_LIB}/libifcoremt${DECOR}*${SUFFIX}
-                ${ONEAPI_LIB}/libifport${DECOR}*${SUFFIX}
-                ${ONEAPI_LIB}/libimf${DECOR}*${SUFFIX}
-                ${ONEAPI_LIB}/libintlc${DECOR}*${SUFFIX}
-                ${ONEAPI_LIB}/libiomp5${DECOR}*${SUFFIX}
-                ${ONEAPI_LIB}/libsvml${DECOR}*${SUFFIX}
+        set(PATH_LIST
+                $ENV{ONEAPI_ROOT}/compiler/latest/lib #  since 2024
+                $ENV{ONEAPI_ROOT}/compiler/latest/linux/compiler/lib/intel64_lin # prior to 2024
         )
-        install(PROGRAMS ${ONEAPI_FILES} DESTINATION lib)
+        foreach (PATHA ${PATH_LIST})
+            file(GLOB ONEAPI_FILES
+                    ${PATHA}/libifcoremt${DECOR}*${SUFFIX}
+                    ${PATHA}/libifport${DECOR}*${SUFFIX}
+                    ${PATHA}/libimf${DECOR}*${SUFFIX}
+                    ${PATHA}/libintlc${DECOR}*${SUFFIX}
+                    ${PATHA}/libiomp5${DECOR}*${SUFFIX}
+                    ${PATHA}/libsvml${DECOR}*${SUFFIX}
+            )
+            install(PROGRAMS ${ONEAPI_FILES} DESTINATION lib)
+        endforeach ()
     endif ()
     if (USE_MAGMA)
         file(GLOB MAGMA_FILES ${MAGMAROOT}/lib/libmagma*.so)
@@ -287,15 +293,18 @@ elseif (COMPILER_IDENTIFIER MATCHES "win")
         install(FILES ${TBB_FILES} DESTINATION bin)
     endif ()
     if (USE_MKL AND MKLROOT MATCHES "(oneapi|oneAPI)")
-        file(GLOB MKL_FILES ${MKLROOT}/redist/intel64/mkl_rt*)
-        install(FILES ${MKL_FILES} DESTINATION bin)
-        file(GLOB MKL_FILES ${MKLROOT}/redist/intel64/mkl_core*)
-        install(FILES ${MKL_FILES} DESTINATION bin)
-        file(GLOB MKL_FILES ${MKLROOT}/redist/intel64/mkl_def*)
-        install(FILES ${MKL_FILES} DESTINATION bin)
-        file(GLOB MKL_FILES ${MKLROOT}/redist/intel64/mkl_avx*)
-        install(FILES ${MKL_FILES} DESTINATION bin)
-        file(GLOB MKL_FILES ${MKLROOT}/redist/intel64/mkl_intel_thread.*)
+        file(GLOB MKL_FILES
+                ${MKLROOT}/redist/intel64/mkl_rt*
+                ${MKLROOT}/redist/intel64/mkl_core*
+                ${MKLROOT}/redist/intel64/mkl_def*
+                ${MKLROOT}/redist/intel64/mkl_avx*
+                ${MKLROOT}/redist/intel64/mkl_intel_thread.*
+                ${MKLROOT}/bin/mkl_rt*
+                ${MKLROOT}/bin/mkl_core*
+                ${MKLROOT}/bin/mkl_def*
+                ${MKLROOT}/bin/mkl_avx*
+                ${MKLROOT}/bin/mkl_intel_thread.*
+        )
         install(FILES ${MKL_FILES} DESTINATION bin)
     else ()
         install(FILES Libs/win/libopenblas.dll DESTINATION bin)
@@ -308,28 +317,37 @@ elseif (COMPILER_IDENTIFIER MATCHES "vs")
     endif ()
     if (USE_MKL AND MKLROOT MATCHES "(oneapi|oneAPI)")
         if (LINK_DYNAMIC_MKL)
-            file(GLOB MKL_FILES ${MKLROOT}/redist/intel64/mkl_core*)
-            install(FILES ${MKL_FILES} DESTINATION bin)
-            file(GLOB MKL_FILES ${MKLROOT}/redist/intel64/mkl_def*)
-            install(FILES ${MKL_FILES} DESTINATION bin)
-            file(GLOB MKL_FILES ${MKLROOT}/redist/intel64/mkl_avx*)
+            file(GLOB MKL_FILES
+                    ${MKLROOT}/redist/intel64/mkl_core*
+                    ${MKLROOT}/redist/intel64/mkl_def*
+                    ${MKLROOT}/redist/intel64/mkl_avx*
+                    ${MKLROOT}/bin/mkl_core*
+                    ${MKLROOT}/bin/mkl_def*
+                    ${MKLROOT}/bin/mkl_avx*
+            )
             install(FILES ${MKL_FILES} DESTINATION bin)
             if (BUILD_MULTITHREAD)
-                file(GLOB MKL_FILES ${MKLROOT}/redist/intel64/mkl_tbb_thread.*)
+                file(GLOB MKL_FILES
+                        ${MKLROOT}/redist/intel64/mkl_tbb_thread.*
+                        ${MKLROOT}/bin/mkl_tbb_thread.*
+                )
                 install(FILES ${MKL_FILES} DESTINATION bin)
             else ()
-                file(GLOB MKL_FILES ${MKLROOT}/redist/intel64/mkl_intel_thread.*)
+                file(GLOB MKL_FILES
+                        ${MKLROOT}/redist/intel64/mkl_intel_thread.*
+                        ${MKLROOT}/bin/mkl_intel_thread.*
+                )
                 install(FILES ${MKL_FILES} DESTINATION bin)
             endif ()
         endif ()
         if (USE_INTEL_OPENMP)
-            find_file(libifcoremd libifcoremd.dll PATHS ${MKLROOT}/../../)
+            find_file(libifcoremd libifcoremd.dll PATHS ${MKLROOT}/../../ ${MKLROOT}/../../compiler/latest/bin/ REQUIRED)
             install(FILES ${libifcoremd} DESTINATION bin)
-            find_file(libiomp5md libiomp5md.dll PATHS ${MKLROOT}/../../)
+            find_file(libiomp5md libiomp5md.dll PATHS ${MKLROOT}/../../ ${MKLROOT}/../../compiler/latest/bin/ REQUIRED)
             install(FILES ${libiomp5md} DESTINATION bin)
-            find_file(libmmd libmmd.dll PATHS ${MKLROOT}/../../)
+            find_file(libmmd libmmd.dll PATHS ${MKLROOT}/../../ ${MKLROOT}/../../compiler/latest/bin/ REQUIRED)
             install(FILES ${libmmd} DESTINATION bin)
-            find_file(svml_dispmd svml_dispmd.dll PATHS ${MKLROOT}/../../)
+            find_file(svml_dispmd svml_dispmd.dll PATHS ${MKLROOT}/../../ ${MKLROOT}/../../compiler/latest/bin/ REQUIRED)
             install(FILES ${svml_dispmd} DESTINATION bin)
         endif ()
     else ()
@@ -395,7 +413,7 @@ if (CMAKE_SYSTEM_NAME MATCHES "Linux")
         set(CPACK_PACKAGE_ICON ${ROOT}/Resource/suanPan-ua.svg)
         set(CPACK_PACKAGE_RELEASE 1)
         set(CPACK_PACKAGE_VENDOR "tlcfem")
-        set(CPACK_PACKAGE_VERSION "3.2.0")
+        set(CPACK_PACKAGE_VERSION "3.3.0")
         set(CPACK_PACKAGE_DESCRIPTION "An Open Source, Parallel and Heterogeneous Finite Element Analysis Framework")
         set(CPACK_PACKAGE_HOMEPAGE_URL "https://github.com/TLCFEM/suanPan")
 

Constraint/BC/GroupMultiplierBC.cpp

@@ -1,5 +1,5 @@
 /*******************************************************************************
- * Copyright (C) 2017-2023 Theodore Chang
+ * Copyright (C) 2017-2024 Theodore Chang
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU General Public License as published by

Constraint/BC/GroupMultiplierBC.h

@@ -1,5 +1,5 @@
 /*******************************************************************************
- * Copyright (C) 2017-2023 Theodore Chang
+ * Copyright (C) 2017-2024 Theodore Chang
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU General Public License as published by

Constraint/BC/GroupPenaltyBC.cpp

@@ -1,5 +1,5 @@
 /*******************************************************************************
- * Copyright (C) 2017-2023 Theodore Chang
+ * Copyright (C) 2017-2024 Theodore Chang
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU General Public License as published by
@@ -20,12 +20,12 @@
 #include <Domain/Group/Group.h>
 
 GroupPenaltyBC::GroupPenaltyBC(const unsigned T, const unsigned S, uvec&& N, uvec&& D)
-    : MultiplierBC(T, S, uvec{}, std::forward<uvec>(D))
-    , groups(std::forward<uvec>(N)) {}
+    : MultiplierBC(T, S, uvec{}, std::move(D))
+    , groups(std::move(N)) {}
 
 GroupPenaltyBC::GroupPenaltyBC(const unsigned T, const unsigned S, uvec&& N, const char TP)
     : MultiplierBC(T, S, uvec{}, TP)
-    , groups(std::forward<uvec>(N)) {}
+    , groups(std::move(N)) {}
 
 int GroupPenaltyBC::initialize(const shared_ptr<DomainBase>& D) {
     suanpan::unordered_set<uword> tag;

Constraint/BC/GroupPenaltyBC.h

@@ -1,5 +1,5 @@
 /*******************************************************************************
- * Copyright (C) 2017-2023 Theodore Chang
+ * Copyright (C) 2017-2024 Theodore Chang
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU General Public License as published by

Constraint/BC/MultiplierBC.cpp

@@ -1,5 +1,5 @@
 /*******************************************************************************
- * Copyright (C) 2017-2023 Theodore Chang
+ * Copyright (C) 2017-2024 Theodore Chang
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU General Public License as published by