remake.yml

packages:
  - tidyverse
  - meddle # at least v0.0.12
  - scipiper
  - readr
  - sbtools
  - sf
  - yaml

sources:
  - src/sb_utils.R
  - src/file_utils.R

targets:
  all:
    depends:
      - log/sb_posted_files.csv

  # create target of spatial file
  # please note that the extract_feature function (below) from the meddle package must be run to create certain pieces of spatial metadata
  # if you are not uploading any spatial data files to your data release,
  # you will need to find a shapefile that represents the geographic area or your data release
  # upload this file to your pipeline repostiory, read it in with the read_spatial_file function below, and extract_feature will pull the necessary metadata
  # you do NOT need to upload this file to ScienceBase  with the sf_to_zip function if it was not a planned part of your data release
  sf_spatial_data:
    command: st_read('example_data/example_shapefile/example_shapefile.shp')
    depends:
      - example_data/example_shapefile/example_shapefile.dbf
      - example_data/example_shapefile/example_shapefile.prj
      - example_data/example_shapefile/example_shapefile.shx
  
  # grab metadata from spatial file
  spatial_metadata:
    command: meddle::extract_feature(sf_spatial_data)
    
  out_data/cars.csv:
    command: file.copy(from = "example_data/example_cars.csv", 
      to = target_name, overwrite = TRUE)
  
  out_data/spatial.zip:
    command: sf_to_zip(zip_filename = target_name, 
      sf_object = sf_spatial_data, layer_name = I('spatial_data'))

  out_xml/fgdc_metadata.xml:
    command: render(filename = target_name,
      "in_text/text_data_release.yml",
      spatial_metadata)
    
  log/sb_posted_files.csv:
    command: sb_replace_files_log(filename = target_name, 
      sb_id = I('5faaac68d34eb413d5df1f22'),
      "out_data/spatial.zip",
      "out_data/cars.csv",
      "out_xml/fgdc_metadata.xml",
      sources = "src/sb_utils.R")