diff --git a/Model/lib/wdk/model/records/commentTableQueries.xml b/Model/lib/wdk/model/records/commentTableQueries.xml index e00e139b5..011ddd16d 100644 --- a/Model/lib/wdk/model/records/commentTableQueries.xml +++ b/Model/lib/wdk/model/records/commentTableQueries.xml @@ -58,7 +58,7 @@ - + @@ -86,11 +86,18 @@ SELECT c.comment_target_id, c.project_name as project_id, c.comment_id, ga.source_id, c.stable_id, c.comment_date, c.headline, files.filecount, references.pmids, - CASE WHEN (references.pmids is null) THEN '' - WHEN REGEXP_LIKE(references.pmids , '^-?[[:digit:],.]*$') - THEN '' || references.pmids || '' - ELSE '' || references.pmids || '' - END AS pmids_link, + CASE WHEN (references.pmids is null) THEN '' + WHEN INSTR(references.pmids, ',') = 0 THEN + 'View AI Summary' + ELSE REPLACE( + REGEXP_REPLACE( + references.pmids, + '([0-9]+)', + '\1' + ), + ',', ', ' + ) + END AS liverpool_ai_links, gene_counts.geneCount, &&selectReviewed&& u.first_name || ' ' || u.last_name || ', ' || u.organization as user_name_org diff --git a/Model/lib/wdk/model/records/geneRecord.xml b/Model/lib/wdk/model/records/geneRecord.xml index b4223f39a..81816c43f 100644 --- a/Model/lib/wdk/model/records/geneRecord.xml +++ b/Model/lib/wdk/model/records/geneRecord.xml @@ -1688,6 +1688,10 @@ name" internal="true"/> + + @@ -2653,6 +2657,8 @@ name" internal="true"/> Shown are references from the NCBI gene2pubmed database and from manual assignment by curators.]]> + + @@ -2684,6 +2690,23 @@ name" internal="true"/> + + + + + + + + + + true diff --git a/Model/lib/wdk/ontology/individuals.txt b/Model/lib/wdk/ontology/individuals.txt index 454ceca4a..bf192d48f 100644 --- a/Model/lib/wdk/ontology/individuals.txt +++ b/Model/lib/wdk/ontology/individuals.txt @@ -302,7 +302,7 @@ GeneRecordClasses.GeneRecordClass.MetabolicPathwaysMPMP http://edamontology.org/ GeneRecordClasses.GeneRecordClass.MetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table MetabolicPathways transcript 2 record download GeneRecordClasses.GeneRecordClass.Alias http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table Alias transcript record download GeneRecordClasses.GeneRecordClass.strain http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute strain gene record-internal download -GeneRecordClasses.GeneRecordClass.PubMed http://edamontology.org/topic_3068 Literature and Reference GeneRecordClasses.GeneRecordClass table PubMed transcript record download +GeneRecordClasses.GeneRecordClass.PubMed http://edamontology.org/topic_3068 Literature and Reference GeneRecordClasses.GeneRecordClass table PubMed transcript 1 record download GeneRecordClasses.GeneRecordClass.Cellxgene http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table Cellxgene transcript record GeneRecordClasses.GeneRecordClass.GeneLinkouts http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass table GeneLinkouts transcript record download GeneRecordClasses.GeneRecordClass.3dPreds http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass table 3dPreds transcript 2 record download