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Error when running GRNBoost2 #16

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rjb67 opened this issue Jul 2, 2019 · 0 comments
Open

Error when running GRNBoost2 #16

rjb67 opened this issue Jul 2, 2019 · 0 comments

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@rjb67
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rjb67 commented Jul 2, 2019

I am running GRNBoost2 as part of pySCENIC and encountered an error that I have not seen posts about previously. Here is what the console returns when I run it:

preparing dask client

parsing input

creating dask graph

6 partitions

computing dask graph

distributed.utils_perf - WARNING - full garbage collections took 11% CPU time recently (threshold: 10%) (happens a few more dozen times)

distributed.nanny - WARNING - Worker process 28580 exited with status 1

shutting down client and local cluster

distributed.nanny - WARNING - Worker process 28581 exited with status 1

distributed.nanny - WARNING - Worker process 28585 exited with status 1

distributed.nanny - WARNING - Worker process 28582 exited with status 1

distributed.nanny - WARNING - Worker process 28584 exited with status 1

distributed.nanny - WARNING - Worker process 28583 exited with status 1

finished

tornado.application - ERROR - Exception in callback <bound method SystemMonitor.update of <SystemMonitor: cpu: 8 memory: 11737 MB fds: 98>>

Traceback (most recent call last):

File "/Users/chip18/anaconda3/lib/python3.7/site-packages/tornado/ioloop.py", line 907, in _run return self.callback()

File "/Users/chip18/anaconda3/lib/python3.7/site-packages/distributed/system_monitor.py", line 72, in update

`read_bytes = (ioc.bytes_recv - last.bytes_recv) / (duration or 0.5)`

AttributeError: 'NoneType' object has no attribute 'bytes_recv'

Any help would be appreciated.

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